Executing: uname -s stdout: Darwin ================================================================================ ================================================================================ Starting configure run at Thu, 06 May 2021 10:31:00 -0600 Configure Options: --configModules=PETSc.Configure --optionsModule=config.compilerOptions --download-hypre=1 --with-debugging=no --with-shared-libraries=1 --download-fblaslapack=1 --download-metis=1 --download-parmetis=1 --download-superlu_dist=1 --download-mumps=1 --download-scalapack=1 --download-slepc=1 --with-mpi=1 --with-cxx-dialect=C++11 --with-fortran-bindings=0 --with-sowing=0 --with-64-bit-indices Working directory: /Users/kongf/projects/petsc1 Machine platform: uname_result(system='Darwin', node='Fandes-MacBook-Pro.local', release='18.7.0', version='Darwin Kernel Version 18.7.0: Thu Jun 18 20:50:10 PDT 2020; root:xnu-4903.278.43~1/RELEASE_X86_64', machine='x86_64', processor='i386') Python version: 3.7.6 | packaged by conda-forge | (default, Mar 5 2020, 15:03:29) [Clang 9.0.1 ] ================================================================================ Environmental variables AS=/Users/kongf/projects/miniconda3/envs/moose-mpich/bin/x86_64-apple-darwin13.4.0-as LDFLAGS= -Wl,-rpath,/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib AR=/Users/kongf/projects/miniconda3/envs/moose-mpich/bin/x86_64-apple-darwin13.4.0-ar CODESIGN_ALLOCATE=/Users/kongf/projects/miniconda3/envs/moose-mpich/bin/x86_64-apple-darwin13.4.0-codesign_allocate MOOSE_NO_CODESIGN=true TERM_PROGRAM=Apple_Terminal SHELL=/bin/bash TERM=xterm-256color HOST=x86_64-apple-darwin13.4.0 CCACHE_SLOPPINESS=time_macros NM=/Users/kongf/projects/miniconda3/envs/moose-mpich/bin/x86_64-apple-darwin13.4.0-nm TMPDIR=/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/ CPPFLAGS=-D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -isystem /Users/kongf/projects/miniconda3/envs/moose-mpich/include Apple_PubSub_Socket_Render=/private/tmp/com.apple.launchd.Vqq9bOnR0P/Render CONDA_SHLVL=2 PAGESTUFF=/Users/kongf/projects/miniconda3/envs/moose-mpich/bin/x86_64-apple-darwin13.4.0-pagestuff TERM_PROGRAM_VERSION=421.2 CONDA_PROMPT_MODIFIER=(moose-mpich) LIPO=/Users/kongf/projects/miniconda3/envs/moose-mpich/bin/x86_64-apple-darwin13.4.0-lipo NMEDIT=/Users/kongf/projects/miniconda3/envs/moose-mpich/bin/x86_64-apple-darwin13.4.0-nmedit SIZE=/Users/kongf/projects/miniconda3/envs/moose-mpich/bin/x86_64-apple-darwin13.4.0-size TERM_SESSION_ID=2D63DB8D-112D-4430-A8C6-80891C819720 INSTALL_NAME_TOOL=/Users/kongf/projects/miniconda3/envs/moose-mpich/bin/x86_64-apple-darwin13.4.0-install_name_tool GFORTRAN=/Users/kongf/projects/miniconda3/envs/moose-mpich/bin/x86_64-apple-darwin13.4.0-gfortran SEGEDIT=/Users/kongf/projects/miniconda3/envs/moose-mpich/bin/x86_64-apple-darwin13.4.0-segedit USER=kongf SEG_HACK=/Users/kongf/projects/miniconda3/envs/moose-mpich/bin/x86_64-apple-darwin13.4.0-seg_hack CONDA_BACKUP_HOST=x86_64-apple-darwin13.4.0 LIBTOOL=/Users/kongf/projects/miniconda3/envs/moose-mpich/bin/x86_64-apple-darwin13.4.0-libtool CLANGXX=/Users/kongf/projects/miniconda3/envs/moose-mpich/bin/x86_64-apple-darwin13.4.0-clang++ CONDA_EXE=/Users/kongf/projects/miniconda3/bin/conda OTOOL=/Users/kongf/projects/miniconda3/envs/moose-mpich/bin/x86_64-apple-darwin13.4.0-otool SSH_AUTH_SOCK=/private/tmp/com.apple.launchd.dhkB9eJHOL/Listeners DEBUG_FORTRANFLAGS=-march=nocona -mtune=core2 -ftree-vectorize -fPIC -fstack-protector -O2 -pipe -isystem /Users/kongf/projects/miniconda3/envs/moose-mpich/include -march=nocona -mtune=core2 -ftree-vectorize -fPIC -fstack-protector -O2 -pipe -Og -g -Wall -Wextra -fcheck=all -fbacktrace -fimplicit-none -fvar-tracking-assignments CXXFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -std=c++14 -fmessage-length=0 -isystem /Users/kongf/projects/miniconda3/envs/moose-mpich/include STRINGS=/Users/kongf/projects/miniconda3/envs/moose-mpich/bin/x86_64-apple-darwin13.4.0-strings CONDA_BACKUP_LDFLAGS= -Wl,-rpath,/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib CONDA_BUILD_SYSROOT=/Library/Developer/CommandLineTools/SDKs/MacOSX10.14.sdk _CE_CONDA= CONDA_PREFIX_1=/Users/kongf/projects/miniconda3 CHECKSYMS=/Users/kongf/projects/miniconda3/envs/moose-mpich/bin/x86_64-apple-darwin13.4.0-checksyms PATH=/Users/kongf/projects/miniconda3/envs/moose-mpich/bin:/Users/kongf/projects/miniconda3/condabin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/Library/TeX/texbin:/opt/X11/bin CONDA_PREFIX=/Users/kongf/projects/miniconda3/envs/moose-mpich LD=/Users/kongf/projects/miniconda3/envs/moose-mpich/bin/x86_64-apple-darwin13.4.0-ld DEBUG_CXXFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ 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HOME=/Users/kongf FORTRANFLAGS=-march=nocona -mtune=core2 -ftree-vectorize -fPIC -fstack-protector -O2 -pipe -isystem /Users/kongf/projects/miniconda3/envs/moose-mpich/include CFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -isystem /Users/kongf/projects/miniconda3/envs/moose-mpich/include FC=mpif90 _CONDA_PYTHON_SYSCONFIGDATA_NAME=_sysconfigdata_x86_64_apple_darwin13_4_0 MPIHOME=/Users/kongf/projects/miniconda3/envs/moose-mpich LOGNAME=kongf CONDA_PYTHON_EXE=/Users/kongf/projects/miniconda3/bin/python INDR=/Users/kongf/projects/miniconda3/envs/moose-mpich/bin/x86_64-apple-darwin13.4.0-indr CONDA_DEFAULT_ENV=moose-mpich RANLIB=/Users/kongf/projects/miniconda3/envs/moose-mpich/bin/x86_64-apple-darwin13.4.0-ranlib DEBUG_CFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -Og -g -Wall -Wextra -isystem /Users/kongf/projects/miniconda3/envs/moose-mpich/include 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pubsub nfsstat svnversion uupick ipcs pod2readme5.18 pluginkit as MvMac net-server5.18 fold gnumake perl5.18 log tmutil checknr certtool python2.7 vmmap shasum5.18 h2xs csrutil shar ldappasswd lkbib ResMerger bitesize.d db_checkpoint funzip power_report.sh iosnoop atsutil osalang dirname pod2man enc2xs git-cvsserver moo-outdated iopending infokey ncal chflags find2perl5.18 fg rwbypid.d jmap dscl leaks splain5.18 nbdst mnthome jshell dsexport mdimport parldyn id procsystime cd quota uuto fuser dsimport csgather git-shell ldapsearch command snmp-bridge-mib egrep notifyutil cc dsmemberutil podselect grn psed whereis tccutil a2p find jstat zcat ip2cc5.18 unifdefall nroff pridist.d size uustat snmpwalk llvm-g++ scp instmodsh5.18 tnameserv true afinfo hidutil ldapadd pwpolicy profiles yacc kswitch xcodebuild jobs c89 emacs-undumped sudo bioutil tmdiagnose plockstat xgettext5.18.pl serialver afida pgrep yes lessecho sdiff afscexpand treereg5.18 cpan5.18 db_deadlock ldapcompare unexpand git-upload-pack ssh-copy-id grolj4 fixproc debinhex.pl lorder pod2html5.18 ranlib javadoc tput fgrep par.pl json_pp5.18 sigdist.d ppdhtml libnetcfg5.18 auval erb dappprof openssl par5.18.pl drutil jinfo splain pmset xmlcatalog zcmp rwsnoop jstatd lpr layerutil snmptest mib2c-update grog creatbyproc.d pstruct fdesetup flex hostinfo jcontrol MergePef lpstat SetFile pod2html rebase tar rdoc uptime s2p pidpersec.d xpath5.18 schemagen cvcp false zegrep memory_pressure uncompress lwp-request ncurses5.4-config sampleproc db_recover nmedit filebyproc.d bison tclsh8.5 jdeps productbuild zipinfo diffstat login db_dump smtpd.py cpu_profiler.d which iopattern finger mig sntp klist open GetFileInfo localedef ruby stringdups htmltree ptargrep5.18 git tr lwp-mirror5.18 htmltree5.18 banner leave jconsole paste RezWack moo-outdated5.18 bzip2 pod2usage5.18 uucp passwd dbiprof5.18 package-stash-conflicts5.18 uuidgen pl2pm5.18 install_name_tool cmpdylib makeinfo php-config zfgrep snfsdefrag zipdetails look findrule5.18 col dscacheutil ptar5.18 zforce lwp-mirror malloc_history cpio nohup kcc ulimit rails bspatch RezDet hotspot.d cvaffinity gatherheaderdoc ppdi pcap-config avmetareadwrite gen_bridge_metadata gem systriage opendiff h2xs5.18 talk expect jimage lockstat dapptrace install-info xattr btmmdiagnose w gunzip /bin: cat echo launchctl df pwd test csh wait4path unlink sleep stty date ed expr pax bash kill sh ps link tcsh dd mkdir ksh hostname rmdir mv ln ls cp sync zsh chmod rm [ /usr/sbin: dsconfigad htdbm netbiosd postlock systemsoundserverd dseditgroup avbdeviced rpcinfo cupsaddsmb BootCacheControl weakpass_edit periodic accton wfsctl postalias slapacl edquota sndiskmove pdisk amt lpadmin fdisk sysadminctl networksetup envvars ktutil setquota sncfgvalidate php-fpm AppleFileServer dnctl accept mDNSResponder repquota cupsfilter checkgid uuconv sharing vifs ac NetBootClientStatus racoon dsenableroot xsanctl kdcsetup aslmanager screencapture htdigest reject rtsold chat DevToolsSecurity logresolve cvdbset KernelEventAgent gpt scutil ioreg ab traceroute6 pwd_mkdb sysctl appsleepd sshd mDNSResponderHelper authserver sncfginstall postmulti raidutil lsof pkgutil slapindex sc_auth ioclasscount uucico firmwarepasswd rarpd tsig-keygen kadmin.local syslogd taskpolicy filecoordinationd dot_clean PasswordService systemsetup zdump snmpd ndp coreaudiod rpcbind praudit usernoted postkick postcat netstat lpc slapadd krbservicesetup sncfgtemplate slapconfig rtadvd httxt2dbm distnoted mtree cupsdisable lpmove disktool purge rpc.statd cupsctl DirectoryService notifyd dtrace kextcache cupsd dbmmanage languagesetup skywalkctl mkpassdb postconf createhomedir ocspd iostat cvdb sa wirelessproxd rpc.lockd uuxqt mkfile softwareupdate unsetpassword zic nfs4mapid postsuper htpasswd rotatelogs universalaccessd audit httpd bluetoothaudiod slapauth slappasswd localemanager asr cvupdatefs bless cvgather xscertadmin visudo uusched dsconfigldap smbdiagnose cfprefsd auditd uuchk cvfsck kextfind diskutil cvfsid sso_util vsdbutil ddns-confgen ioalloccount uasysdiagnose dev_mkdb hdik slapdn vpnd postqueue setkey repairHomePermissions spindump cupsreject traceroute quotaoff newsyslog postfix cvfsdb snmptrapd defragcli chroot arp pictd cupsaccept nvram chown mkextunpack sncfgremove sncfgquery postlog installer pppd httpd-wrapper system_profiler fcgistarter bluetoothd slapschema kadmin spray cvversions kextlibs tcpdump xartutil securityd nlcontrol quotaon spctl vipw gssd slaptest dnsextd automount scselect envvars-std graphicssession ckksctl lpinfo smbd serverinfo cvmkfs postmap postdrop cupsenable cron systemstats bnepd kextstat cvlabel sendmail systemkeychain slapcat ipconfig auditreduce cvadmin WirelessRadioManagerd apachectl htcacheclean /sbin: mount_hfs mount_apfs md5 fsck mount_udf quotacheck mount_cd9660 ping fsck_exfat mount_exfat fsck_udf shutdown route mount_webdav fsck_hfs nfsd reboot nfsiod fsck_cs fsck_apfs fstyp_msdos disklabel mount_msdos fsck_msdos ifconfig halt mount_9p mount_ntfs autodiskmount rtsol newfs_apfs umount fstyp kextunload mpioutil fstyp_ntfs emond mount_nfs newfs_udf mount_ftp pfctl mknod fstyp_udf dmesg mount fibreconfig fstyp_hfs newfs_hfs dynamic_pager launchd newfs_exfat apfs_hfs_convert nologin mount_afp mount_smbfs ping6 kextload mount_cddafs mount_fdesc newfs_msdos mount_acfs mount_devfs /Library/TeX/texbin: luajittex lollipop t1disasm chktex rubikrotation lily-rebuild-pdfs weave mag man ebb prepmx mktexlsr gsftopk upmendex dvibook kpsewhere rumakeindex fontinst cef5conv lacheck httexi lily-image-commands texloganalyser dvilj patgen uptex exceltex pdvitype texconfig-sys xmltex vlna texsis dvipdft pdfjam-pocketmod urlbst pdfcslatex afm2afm cefconv pdfjam-slides6up sjisconv tex2xindy musixtex pdfcsplain opl2ofm de-macro bbl2bib ltx2crossrefxml pdftex r-mpost dvitodvi gftodvi dviconcat texluajitc dvipng komkindex tex sty2dtx ppltotf yplan eplain eptex lily-glyph-commands htmex texlua htxelatex xasy fmtutil-user wovp2ovf dvilualatex cefsconv context platex allec adhocfilelist kpsetool makejvf texdoctk vptovf tex4ht texluajit mtxrunjit uplatex musixflx pfarrei mf latexdiff-vc ttfdump etex fig4latex bibexport ttf2tfm latexmk pmpost ctwill pst2pdf wordcount pdfbook texconfig-dialog lwarpmk dvilj2p dviinfox ttf2kotexfont ctanbib cweave bg5+latex pdfatfi ptex2pdf e2pall kpsewhich upbibtex texdiff mathspic kanji-fontmap-creator kanji-config-updmap asy typeoutfileinfo upmpost pdflatex perltex mkt1font cefslatex cjk-gs-integrate chkdvifont dvitype pdfjadetex t1lint jamo-normalize fmtutil-sys wofm2opl dviasm kpsestat pdfxup makedtx pltotf mkindex dvilj6 r-pmpost xindy.mem xetex latex ps4pdf multibibliography teckit_compile ttf2afm biburl2doi getmapdl uptftopl contextjit bib2gls match_parens mkjobtexmf pdf90 updvitomp ps2eps pkfix-helper chkweb arlatex pdfpun pn2pdf pdfclose xindex clxelatex dosepsbin jadetex a2ping bibzbladd ovf2ovp mfluajit-nowin mpost texosquery-jre5 texhash convbkmk thumbpdf pkfix dvihp hbf2gf xindy.run texcount pdf180 texmfstart latexrevise cefpdflatex texluac dvicopy lua2dox_filter ctie pdftex-quiet euptex pdftosrc mf-nowin ctangle omfonts t1asm mflua-nowin cluttex svn-multi mk4ht afm2tfm pdfopen fragmaster pdfnup ebong ctanify pygmentex texdef luatex cslatex synctex texdirflatten gbkpdflatex xdvipdfmx sjispdflatex makeindex dviluatex mkofm dvipdfmx psbook dvispc csplain ttftotype42 mft t1rawafm fmtutil ctwill-twinx simpdftex depythontex otfinfo latexindent kanji-config-updmap-sys extconv disdvi pdvitomp dvipdfm texliveonfly allneeded htcontext t1testpage biber dv2dt xindy pdfbook2 t1unmac xelatex webquiz kpsepath diadia makeglossaries cef5pdflatex autoinst mkpic splitindex repstopdf otangle mfplain latexfileversion latex-git-log inimf latex2man ps2pk htxetex l3build ptftopl ptex gbklatex t1binary bibtex t1dotlessj mktexpk detex htlatex odvicopy dvidvi extractres extractbb tie latexdef tlmgr arara ctan-o-mat rubibtex dvigif gftype ketcindy kpseaccess luacsplain cachepic srcredact dtxgen mmafm pktype kpsexpand pktogf msxlint t1reencode vftovp xhlatex ht pdf270 mendex make4ht ceflatex texlinks pmxchords mptopdf afm2pl mktexmf lamed gftopk ulqda dvilj4l pooltype pdfjoin bg5latex bibmradd aleph wovf2ovp pdfetex dvi2tty ofm2opl pslatex initex latexpand mkgrkindex mtxrun epsffit listings-ext.sh mktexfmt scor2prt psnup ot2kpx allcm pk2bm dvitomp texindy vpl2vpl luatools cef5latex ctwill-refsort bg5+pdflatex dvisvgm tex2aspc bg5conv deweb tlcockpit cfftot1 dviselect odvitype vpl2ovp otp2ocp latexdiff dt2dv bg5pdflatex mf2pt1 psresize t1mac epspdf pythontex bibtexu authorindex texosquery tlshell pdfxmltex pdfjam-slides3up includeres t1ascii pdflatexpicscale mfluajit axohelp tangle httex texosquery-jre8 checkcites bibtex8 dvi2fax otftotfm cefspdflatex mmpfb pfb2pfa vpe psselect findhyph gregorio ovp2ovf utf8mex mflua purifyeps autosp bundledoc mllatex tex4ebook xdvi-xaw sjislatex rungs dvilj4 ltxfileinfo texconfig updvitype ltximg updmap-user dvips convertgls2bib latex2nemeth pdfjam epstopdf outocp pedigree mkocp kpsereadlink ttf2pk tpic2pdftex kanji-config-updmap-user psjoin m-tx uppltotf texdoc bbox dvired latex-papersize makeglossaries-lite t4ht xdvi ps2frag wopl2ofm devnag ctanupload texexec listbib cllualatex lualatex pmxab jfmutil pdfmex tftopl mltex amstex pbibtex pstops mex bibdoiadd pdfflip updmap dvipos luaotfload-tool epspdftk updmap-sys r-upmpost mktextfm texfot checklistings rpdfcrop a5toa4 installfont-tl pdfcrop pdfannotextractor /opt/X11/bin: xfs xfsinfo atobm xdpyinfo showrgb xlsfonts editres fonttosfnt xfontsel xclock xmore xman xmag xrefresh fc-list xdmshell xauth twm cxpm mkfontdir xclipboard png-fix-itxt ucs2any xterm bdftruncate xsetroot xmessage xcursorgen fc-pattern xkbvleds xkbbell freetype-config Xephyr fc-validate bitmap libpng16-config pngfix fc-query xkbprint luit xhost gtf listres x11perf Xorg libpng-config koi8rxterm xpr xstdcmap xgc mkfontscale setxkbmap xinit Xquartz xbacklight xdm xcmsdb xdpr xfindproxy xrdb xlsclients xprop xkeystone xeyes Xvfb Xnest xev startx xkbwatch xscope xfd sessreg xwud lndir xinput xconsole glxinfo sxpm xsetmode Xfake fslsfonts xcompmgr xrandr bmtoa xwd xmodmap glxgears fc-cache iceauth cvt xcutsel bdftopcf fc-cat xsetpointer xkbevd quartz-wm xsm appres xset xlsatoms fc-match oclock x11perfcomp resize showfont xditview xwininfo xvinfo xcalc xgamma makedepend viewres ico X gccmakedep xedit smproxy xkill xkbcomp xload font_cache xmh xlogo fstobdf uxterm fc-scan ============================================================================================= TESTING: configureExternalPackagesDir from config.framework(config/BuildSystem/config/framework.py:987) child config.utilities.macosFirewall 0.000090 ============================================================================================= TESTING: configureDebuggers from config.utilities.debuggers(config/BuildSystem/config/utilities/debuggers.py:21) Find a default debugger and determine its arguments Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS Checking for program /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/lldb...not found Checking for program /Users/kongf/projects/miniconda3/condabin/lldb...not found Checking for program /usr/local/bin/lldb...not found Checking for program /usr/bin/lldb...found Defined make macro "LLDB" to "/usr/bin/lldb" Defined "USE_DEBUGGER" to ""lldb"" Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS Checking for program /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/dsymutil...not found Checking for program /Users/kongf/projects/miniconda3/condabin/dsymutil...not found Checking for program /usr/local/bin/dsymutil...not found Checking for program /usr/bin/dsymutil...found Defined make macro "DSYMUTIL" to "/usr/bin/dsymutil" Defined make macro "DSYMUTIL" to "/usr/bin/dsymutil" Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS Defined "DO_NOT_SWAP_CHILD_FOR_DEBUGGER" to "1" child config.utilities.debuggers 0.019571 ============================================================================================= TESTING: configureDirectories from PETSc.options.petscdir(config/PETSc/options/petscdir.py:23) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 0 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 15 #define PETSC_VERSION_SUBMINOR 0 #define PETSC_VERSION_PATCH 0 #define PETSC_VERSION_DATE "unknown" #define PETSC_VERSION_GIT "unknown" #define PETSC_VERSION_DATE_GIT "unknown" #define PETSC_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_ PETSC_VERSION_EQ #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ child PETSc.options.petscdir 0.002734 ============================================================================================= TESTING: getDatafilespath from PETSc.options.dataFilesPath(config/PETSc/options/dataFilesPath.py:29) Checks what DATAFILESPATH should be child PETSc.options.dataFilesPath 0.000757 ============================================================================================= TESTING: configureGit from config.sourceControl(config/BuildSystem/config/sourceControl.py:24) Find the Git executable Checking for program /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/git...not found Checking for program /Users/kongf/projects/miniconda3/condabin/git...not found Checking for program /usr/local/bin/git...not found Checking for program /usr/bin/git...found Defined make macro "GIT" to "git" Executing: git --version stdout: git version 2.20.1 (Apple Git-117) ============================================================================================= TESTING: configureMercurial from config.sourceControl(config/BuildSystem/config/sourceControl.py:35) Find the Mercurial executable Checking for program /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/hg...not found Checking for program /Users/kongf/projects/miniconda3/condabin/hg...not found Checking for program /usr/local/bin/hg...not found Checking for program /usr/bin/hg...not found Checking for program /bin/hg...not found Checking for program /usr/sbin/hg...not found Checking for program /sbin/hg...not found Checking for program /Library/TeX/texbin/hg...not found Checking for program /opt/X11/bin/hg...not found Checking for program /Users/kongf/projects/petsc1/lib/petsc/bin/win32fe/hg...not found child config.sourceControl 0.014728 ============================================================================================= TESTING: configureInstallationMethod from PETSc.options.petscclone(config/PETSc/options/petscclone.py:20) lib/petsc/bin/maint exists. This appears to be a repository clone .git directory exists Executing: ['git', 'describe', '--match=v*'] stdout: v3.15.0-438-g1127493aad Executing: ['git', 'log', '-1', '--pretty=format:%H'] stdout: 1127493aad0196a1808f584f0f4ee8e5790a9063 Executing: ['git', 'log', '-1', '--pretty=format:%ci'] stdout: 2021-05-06 01:23:59 +0000 Executing: ['git', 'rev-parse', '--abbrev-ref', 'HEAD'] stdout: Fande-Kong/ghost_vec_ltg_mapping Defined "VERSION_GIT" to ""v3.15.0-438-g1127493aad"" Defined "VERSION_DATE_GIT" to ""2021-05-06 01:23:59 +0000"" Defined "VERSION_BRANCH_GIT" to ""Fande-Kong/ghost_vec_ltg_mapping"" child PETSc.options.petscclone 0.076070 ============================================================================================= TESTING: setNativeArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:31) ============================================================================================= TESTING: configureArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:43) Checks PETSC_ARCH and sets if not set configure hash file: arch-darwin-c-opt/lib/petsc/conf/configure-hash does not match, need to run configure Setting hashfile: arch-darwin-c-opt/lib/petsc/conf/configure-hash Deleting configure hash file: arch-darwin-c-opt/lib/petsc/conf/configure-hash Deleted configure hash file: arch-darwin-c-opt/lib/petsc/conf/configure-hash child PETSc.options.arch 0.058369 ============================================================================================= TESTING: setInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:39) setup installDir to either prefix or if that is not set to PETSC_DIR/PETSC_ARCH Defined make macro "PREFIXDIR" to "/Users/kongf/projects/petsc1/arch-darwin-c-opt" ============================================================================================= TESTING: saveReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:85) ============================================================================================= TESTING: cleanConfDir from PETSc.options.installDir(config/PETSc/options/installDir.py:78) ============================================================================================= TESTING: configureInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:62) Makes installDir subdirectories if it does not exist for both prefix install location and PETSc work install location Changed persistence directory to /Users/kongf/projects/petsc1/arch-darwin-c-opt/lib/petsc/conf ============================================================================================= TESTING: restoreReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:98) child PETSc.options.installDir 0.001536 ============================================================================================= TESTING: setExternalPackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:15) ============================================================================================= TESTING: cleanExternalpackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:22) child PETSc.options.externalpackagesdir 0.000692 ============================================================================================= TESTING: configureCLanguage from PETSc.options.languages(config/PETSc/options/languages.py:27) Choose whether to compile the PETSc library using a C or C++ compiler C language is C Defined "CLANGUAGE_C" to "1" Defined make macro "CLANGUAGE" to "C" child PETSc.options.languages 0.000632 ============================================================================================= TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1973) ============================================================================================= ***** WARNING: CC (set to ccache mpicc) found in environment variables - ignoring use ./configure CC=$CC if you really want to use that value ****** ============================================================================================= ============================================================================================= ***** WARNING: CXX (set to ccache mpicxx) found in environment variables - ignoring use ./configure CXX=$CXX if you really want to use that value ****** ============================================================================================= ============================================================================================= ***** WARNING: FC (set to mpif90) found in environment variables - ignoring use ./configure FC=$FC if you really want to use that value ****** ============================================================================================= ============================================================================================= ***** WARNING: F77 (set to mpif77) found in environment variables - ignoring use ./configure F77=$F77 if you really want to use that value ****** ============================================================================================= ============================================================================================= ***** WARNING: F90 (set to mpif90) found in environment variables - ignoring use ./configure F90=$F90 if you really want to use that value ****** ============================================================================================= ============================================================================================= ***** WARNING: CFLAGS (set to -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -isystem /Users/kongf/projects/miniconda3/envs/moose-mpich/include) found in environment variables - ignoring use ./configure CFLAGS=$CFLAGS if you really want to use that value ****** ============================================================================================= ============================================================================================= ***** WARNING: CXXFLAGS (set to -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -std=c++14 -fmessage-length=0 -isystem /Users/kongf/projects/miniconda3/envs/moose-mpich/include) found in environment variables - ignoring use ./configure CXXFLAGS=$CXXFLAGS if you really want to use that value ****** ============================================================================================= ============================================================================================= ***** WARNING: FFLAGS (set to -march=nocona -mtune=core2 -ftree-vectorize -fPIC -fstack-protector -O2 -pipe -isystem /Users/kongf/projects/miniconda3/envs/moose-mpich/include) found in environment variables - ignoring use ./configure FFLAGS=$FFLAGS if you really want to use that value ****** ============================================================================================= ============================================================================================= ***** WARNING: CPPFLAGS (set to -D_FORTIFY_SOURCE=2 -mmacosx-version-min=10.9 -isystem /Users/kongf/projects/miniconda3/envs/moose-mpich/include) found in environment variables - ignoring use ./configure CPPFLAGS=$CPPFLAGS if you really want to use that value ****** ============================================================================================= ============================================================================================= ***** WARNING: LDFLAGS (set to -Wl,-rpath,/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib) found in environment variables - ignoring use ./configure LDFLAGS=$LDFLAGS if you really want to use that value ****** ============================================================================================= ============================================================================================= ***** WARNING: AR (set to /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/x86_64-apple-darwin13.4.0-ar) found in environment variables - ignoring use ./configure AR=$AR if you really want to use that value ****** ============================================================================================= ============================================================================================= ***** WARNING: RANLIB (set to /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/x86_64-apple-darwin13.4.0-ranlib) found in environment variables - ignoring use ./configure RANLIB=$RANLIB if you really want to use that value ****** ============================================================================================= ============================================================================================= TESTING: checkEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:2003) ============================================================================================= TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:1943) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ============================================================================================= TESTING: requireMpiLdPath from config.setCompilers(config/BuildSystem/config/setCompilers.py:1964) OpenMPI wrappers require LD_LIBRARY_PATH set ============================================================================================= TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:542) Initialize the compiler and linker flags Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Initialized HIPFLAGS to Initialized HIPFLAGS to Initialized LDFLAGS to Initialized SYCLCXXFLAGS to Initialized SYCLCXXFLAGS to Initialized LDFLAGS to Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Initialized CPPFLAGS to Initialized FPPFLAGS to Initialized CUDAPPFLAGS to -Wno-deprecated-gpu-targets Initialized CXXPPFLAGS to Initialized HIPPPFLAGS to -Wno-deprecated-gpu-targets Initialized SYCLPPFLAGS to -Wno-deprecated-gpu-targets Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized HIPC_LINKER_FLAGS to [] Initialized SYCLCXX_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ============================================================================================= TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:717) Locate a functional C compiler Checking for program /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/mpicc...found Defined make macro "CC" to "mpicc" ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lpetsc-ufod4vtr9mqHvKIQiVAm clang-9: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: ld: library not found for -lpetsc-ufod4vtr9mqHvKIQiVAm clang-9: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: ld: library not found for -lpetsc-ufod4vtr9mqHvKIQiVAm clang-9: error: linker command failed with exit code 1 (use -v to see invocation): ======== Checking running linked program ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o Testing executable /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest to see if it can be run Executing: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest Executing: mpicc --version stdout: clang version 9.0.1 Target: x86_64-apple-darwin13.4.0 Thread model: posix InstalledDir: /Users/kongf/projects/miniconda3/envs/moose-mpich/bin Since MPI c compiler starts with mpi, force searches for other compilers to only look for MPI compilers ============================================================================================= TESTING: checkCPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:756) Locate a functional C preprocessor Checking for program /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/mpicc...found Defined make macro "CPP" to "mpicc -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : ============================================================================================= TESTING: checkCUDACompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:792) Locate a functional CUDA compiler Checking for program /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/nvcc...not found Checking for program /Users/kongf/projects/miniconda3/condabin/nvcc...not found Checking for program /usr/local/bin/nvcc...not found Checking for program /usr/bin/nvcc...not found Checking for program /bin/nvcc...not found Checking for program /usr/sbin/nvcc...not found Checking for program /sbin/nvcc...not found Checking for program /Library/TeX/texbin/nvcc...not found Checking for program /opt/X11/bin/nvcc...not found Checking for program /Users/kongf/projects/petsc1/lib/petsc/bin/win32fe/nvcc...not found Checking for program /Developer/NVIDIA/CUDA-6.5/bin/nvcc...not found Checking for program /Users/kongf/projects/petsc1/lib/petsc/bin/win32fe/nvcc...not found Unable to find programs ['nvcc'] providing listing of the specific search path Warning accessing /Developer/NVIDIA/CUDA-6.5/bin gives errors: can only concatenate str (not "builtin_function_or_method") to str Checking for program /usr/local/cuda/bin/nvcc...not found Checking for program /Users/kongf/projects/petsc1/lib/petsc/bin/win32fe/nvcc...not found Unable to find programs ['nvcc'] providing listing of the specific search path Warning accessing /usr/local/cuda/bin gives errors: can only concatenate str (not "builtin_function_or_method") to str ============================================================================================= TESTING: checkCUDAPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:832) Locate a functional CUDA preprocessor ============================================================================================= TESTING: checkHIPCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:866) Locate a functional HIP compiler Checking for program /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/hipcc...not found Checking for program /Users/kongf/projects/miniconda3/condabin/hipcc...not found Checking for program /usr/local/bin/hipcc...not found Checking for program /usr/bin/hipcc...not found Checking for program /bin/hipcc...not found Checking for program /usr/sbin/hipcc...not found Checking for program /sbin/hipcc...not found Checking for program /Library/TeX/texbin/hipcc...not found Checking for program /opt/X11/bin/hipcc...not found Checking for program /Users/kongf/projects/petsc1/lib/petsc/bin/win32fe/hipcc...not found Checking for program /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/opt/rocm/bin/hipcc...not found Checking for program /Users/kongf/projects/miniconda3/condabin/opt/rocm/bin/hipcc...not found Checking for program /usr/local/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/bin/opt/rocm/bin/hipcc...not found Checking for program /bin/opt/rocm/bin/hipcc...not found Checking for program /usr/sbin/opt/rocm/bin/hipcc...not found Checking for program /sbin/opt/rocm/bin/hipcc...not found Checking for program /Library/TeX/texbin/opt/rocm/bin/hipcc...not found Checking for program /opt/X11/bin/opt/rocm/bin/hipcc...not found Checking for program /Users/kongf/projects/petsc1/lib/petsc/bin/win32fe/opt/rocm/bin/hipcc...not found ============================================================================================= TESTING: checkHIPPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:902) Placeholder for now ============================================================================================= TESTING: checkSYCLCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:923) Locate a functional SYCL compiler ============================================================================================= TESTING: checkSYCLPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:949) Placeholder for now ============================================================================================= TESTING: checkCxxCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:1036) Locate a functional Cxx compiler Checking for program /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/mpicxx...found Defined make macro "CXX" to "mpicxx" ===== Checking compiler Executing: mpicxx -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ===== Checking linker Executing: mpicxx -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicxx -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o ===== Checking linker Executing: mpicxx -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicxx -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lpetsc-ufod4vtr9mqHvKIQiVAm clang-9: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: ld: library not found for -lpetsc-ufod4vtr9mqHvKIQiVAm clang-9: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: ld: library not found for -lpetsc-ufod4vtr9mqHvKIQiVAm clang-9: error: linker command failed with exit code 1 (use -v to see invocation): ======== Checking running linked program ===== Checking linker Executing: mpicxx -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicxx -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o Testing executable /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest to see if it can be run Executing: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest Executing: mpicxx --version stdout: clang version 9.0.1 Target: x86_64-apple-darwin13.4.0 Thread model: posix InstalledDir: /Users/kongf/projects/miniconda3/envs/moose-mpich/bin ============================================================================================= TESTING: checkCxxPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:1077) Locate a functional Cxx preprocessor Checking for program /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/mpicxx...found Defined make macro "CXXPP" to "mpicxx -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicxx -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.cc Preprocess output before filtering: : Preprocess output after filtering: : ============================================================================================= TESTING: checkFortranCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:1176) Locate a functional Fortran compiler Checking for program /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/mpif90...found Defined make macro "FC" to "mpif90" ===== Checking compiler Executing: mpif90 -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.F90 Successful compile: Source: program main end ===== Checking linker Executing: mpif90 -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: mpif90 -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o ===== Checking linker Executing: mpif90 -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: mpif90 -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Linker output before filtering: ld: library not found for -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status : Linker output after filtering: ld: library not found for -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status: ======== Checking running linked program ===== Checking linker Executing: mpif90 -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: mpif90 -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o Testing executable /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest to see if it can be run Executing: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest Executing: mpif90 --version stdout: GNU Fortran (GCC) 7.3.0 Copyright (C) 2017 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. ============================================================================================= TESTING: checkFortranPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:1213) Locate a functional Fortran preprocessor Checking for program /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/mpif90...found Defined make macro "FPP" to "mpif90 -E" Deleting "FPP" Checking for program /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/mpif90...found Defined make macro "FPP" to "mpif90 --use cpp32" Deleting "FPP" ============================================================================================= TESTING: checkFortranComments from config.setCompilers(config/BuildSystem/config/setCompilers.py:1235) Make sure fortran comment "!" works ===== Checking compiler Executing: mpif90 -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.F90 Successful compile: Source: program main ! comment end Fortran comments can use ! in column 1 ============================================================================================= TESTING: checkLargeFileIO from config.setCompilers(config/BuildSystem/config/setCompilers.py:1382) ============================================================================================= TESTING: checkArchiver from config.setCompilers(config/BuildSystem/config/setCompilers.py:1481) Check that the archiver exists and can make a library usable by the compiler Executing: ar -V Executing: ar -V Defined make macro "FAST_AR_FLAGS" to "Scq" ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/ar...not found Checking for program /Users/kongf/projects/miniconda3/condabin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/ranlib...not found Checking for program /Users/kongf/projects/miniconda3/condabin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" Executing: /usr/bin/ar cr /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/libconf1.a /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conf1.o Executing: /usr/bin/ranlib -c /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/libconf1.a ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.c:6:26: warning: if statement has empty body [-Wempty-body] int b = foo(1); if (b); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.c:6:26: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -L/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -lconf1 Defined make macro "AR_FLAGS" to "cr" Defined make macro "AR_LIB_SUFFIX" to "a" ============================================================================================= TESTING: checkArchiverRecipeArgfile from config.setCompilers(config/BuildSystem/config/setCompilers.py:1545) Checks if AR handles @ notation Executing: /usr/bin/ar cr checkRecipeArgfile.a @checkRecipeArgfile.args Possible ERROR while running archiver: exit code 1 stderr: ar: @checkRecipeArgfile.args: No such file or directory ============================================================================================= TESTING: checkSharedLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1625) Check that the linker can produce shared libraries Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS Checking shared linker mpicc using flags ['-dynamiclib -single_module', '-undefined dynamic_lookup', '-multiply_defined suppress', '-no_compact_unwind'] Checking for program /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/mpicc...found Defined make macro "LD_SHARED" to "mpicc" Executing: mpicc --help | head -n 20 stdout: OVERVIEW: clang LLVM compiler USAGE: clang-9 [options] file... OPTIONS: -### Print (but do not run) the commands to run for this compilation --analyzer-output Static analyzer report output format (html|plist|plist-multi-file|plist-html|text). --analyze Run the static analyzer -arcmt-migrate-emit-errors Emit ARC errors even if the migrator can fix them -arcmt-migrate-report-output Output path for the plist report -B Add to search path for binaries and object files used implicitly -CC Include comments from within macros in preprocessed output -cfguard Emit tables required for Windows Control Flow Guard. -cl-denorms-are-zero OpenCL only. Allow denormals to be flushed to zero. -cl-fast-relaxed-math OpenCL only. Sets -cl-finite-math-only and -cl-unsafe-math-optimizations, and defines __FAST_RELAXED_MATH__. -cl-finite-math-only OpenCL only. Allow floating-point optimizations that assume arguments and results are not NaNs or +-Inf. -cl-fp32-correctly-rounded-divide-sqrt Executing: mpicc -show stdout: x86_64-apple-darwin13.4.0-clang -march=core2 -mtune=haswell -Wl,-rpath,/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -Wl,-commons,use_dylibs -I/Users/kongf/projects/miniconda3/envs/moose-mpich/include -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -lmpi -lpmpi Trying C compiler flag -PIC Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -PIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 1 stderr: clang-9: error: unknown argument '-PIC'; did you mean '-fPIC'? Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -PIC clang-9: error: unknown argument '-PIC'; did you mean '-fPIC'? PETSc Error: No output file produced Rejecting compiler flag -PIC due to nonzero status from link Rejecting compiler flag -PIC due to clang-9: error: unknown argument '-PIC'; did you mean '-fPIC'? PETSc Error: No output file produced Rejected C compiler flag -PIC because it was not compatible with shared linker mpicc using flags ['-dynamiclib -single_module', '-undefined dynamic_lookup', '-multiply_defined suppress', '-no_compact_unwind'] Trying C compiler flag -fPIC Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC Added C compiler flag -fPIC Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest -dynamiclib -single_module -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o Valid C linker flag -dynamiclib -single_module Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest -undefined dynamic_lookup -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o Valid C linker flag -undefined dynamic_lookup Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest -multiply_defined suppress -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o Valid C linker flag -multiply_defined suppress Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest -no_compact_unwind -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 1 stderr: clang-9: error: unknown argument: '-no_compact_unwind' Rejecting linker flag -no_compact_unwind due to nonzero status from link Linker output before filtering: clang-9: error: unknown argument: '-no_compact_unwind' : Linker output after filtering: clang-9: error: unknown argument: '-no_compact_unwind': ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(void); int main() { int ret = foo(); if (ret) {} ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -L/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -lconftest Using shared linker mpicc with flags ['-dynamiclib -single_module', '-undefined dynamic_lookup', '-multiply_defined suppress'] and library extension dylib Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS ============================================================================================= TESTING: checkLinkerMac from config.setCompilers(config/BuildSystem/config/setCompilers.py:1700) Tests some Apple Mac specific linker flags Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest -Wl,-bind_at_load -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o Valid C linker flag -Wl,-bind_at_load Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-bind_at_load -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o Valid C linker flag -Wl,-multiply_defined,suppress Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest -Wl,-multiply_defined -Wl,suppress -Wl,-bind_at_load -Wl,-multiply_defined,suppress -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o Valid C linker flag -Wl,-multiply_defined -Wl,suppress Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest -Wl,-commons,use_dylibs -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o Valid C linker flag -Wl,-commons,use_dylibs Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest -Wl,-search_paths_first -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o Valid C linker flag -Wl,-search_paths_first Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o Valid C linker flag -Wl,-no_compact_unwind Executing: mpicxx -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicxx -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest -Wl,-bind_at_load /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-bind_at_load Executing: mpicxx -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicxx -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-bind_at_load /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-multiply_defined,suppress Executing: mpicxx -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicxx -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest -Wl,-multiply_defined -Wl,suppress -Wl,-bind_at_load -Wl,-multiply_defined,suppress /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-multiply_defined -Wl,suppress Executing: mpicxx -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicxx -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest -Wl,-commons,use_dylibs -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-commons,use_dylibs Executing: mpicxx -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicxx -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest -Wl,-search_paths_first -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-search_paths_first Executing: mpicxx -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicxx -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-no_compact_unwind Executing: mpif90 -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: mpif90 -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest -Wl,-bind_at_load /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o Valid FC linker flag -Wl,-bind_at_load Executing: mpif90 -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: mpif90 -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-bind_at_load /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o Valid FC linker flag -Wl,-multiply_defined,suppress Executing: mpif90 -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: mpif90 -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest -Wl,-multiply_defined -Wl,suppress -Wl,-bind_at_load -Wl,-multiply_defined,suppress /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o Valid FC linker flag -Wl,-multiply_defined -Wl,suppress Executing: mpif90 -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: mpif90 -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest -Wl,-commons,use_dylibs -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o Valid FC linker flag -Wl,-commons,use_dylibs Executing: mpif90 -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: mpif90 -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest -Wl,-search_paths_first -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o Valid FC linker flag -Wl,-search_paths_first Executing: mpif90 -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: mpif90 -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o Valid FC linker flag -Wl,-no_compact_unwind Executing: uname -s stdout: Darwin ============================================================================================= TESTING: checkPIC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1325) Determine the PIC option for each compiler Executing: mpicxx --help | head -n 20 stdout: OVERVIEW: clang LLVM compiler USAGE: clang-9 [options] file... OPTIONS: -### Print (but do not run) the commands to run for this compilation --analyzer-output Static analyzer report output format (html|plist|plist-multi-file|plist-html|text). --analyze Run the static analyzer -arcmt-migrate-emit-errors Emit ARC errors even if the migrator can fix them -arcmt-migrate-report-output Output path for the plist report -B Add to search path for binaries and object files used implicitly -CC Include comments from within macros in preprocessed output -cfguard Emit tables required for Windows Control Flow Guard. -cl-denorms-are-zero OpenCL only. Allow denormals to be flushed to zero. -cl-fast-relaxed-math OpenCL only. Sets -cl-finite-math-only and -cl-unsafe-math-optimizations, and defines __FAST_RELAXED_MATH__. -cl-finite-math-only OpenCL only. Allow floating-point optimizations that assume arguments and results are not NaNs or +-Inf. -cl-fp32-correctly-rounded-divide-sqrt Executing: mpicxx -show stdout: x86_64-apple-darwin13.4.0-clang++ -march=core2 -mtune=haswell -Wl,-rpath,/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -Wl,-commons,use_dylibs -I/Users/kongf/projects/miniconda3/envs/moose-mpich/include -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -lmpicxx -lmpi -lpmpi Trying Cxx compiler flag -PIC for PIC code Executing: mpicxx -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -PIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.cc Possible ERROR while running compiler: exit code 1 stderr: clang-9: error: unknown argument '-PIC'; did you mean '-fPIC'? Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -PIC clang-9: error: unknown argument '-PIC'; did you mean '-fPIC'? PETSc Error: No output file produced Rejecting compiler flag -PIC due to nonzero status from link Rejecting compiler flag -PIC due to clang-9: error: unknown argument '-PIC'; did you mean '-fPIC'? PETSc Error: No output file produced Rejected Cxx compiler flag -PIC because shared linker cannot handle it Trying Cxx compiler flag -fPIC for PIC code Executing: mpicxx -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC Added Cxx compiler flag -fPIC ===== Checking linker Executing: mpicxx -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o Accepted Cxx compiler flag -fPIC for PIC code Executing: mpif90 --help | head -n 20 stdout: Usage: x86_64-apple-darwin13.4.0-gfortran [options] file... Options: -pass-exit-codes Exit with highest error code from a phase. --help Display this information. --target-help Display target specific command line options. --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...]. Display specific types of command line options. (Use '-v --help' to display command line options of sub-processes). --version Display compiler version information. -dumpspecs Display all of the built in spec strings. -dumpversion Display the version of the compiler. -dumpmachine Display the compiler's target processor. -print-search-dirs Display the directories in the compiler's search path. -print-libgcc-file-name Display the name of the compiler's companion library. -print-file-name= Display the full path to library . -print-prog-name= Display the full path to compiler component . -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path. -print-multi-directory Display the root directory for versions of libgcc. -print-multi-lib Display the mapping between command line options and Detected GNU compiler Executing: mpif90 -show stdout: x86_64-apple-darwin13.4.0-gfortran -march=core2 -mtune=haswell -Wl,-rpath,/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -Wl,-commons,use_dylibs -I/Users/kongf/projects/miniconda3/envs/moose-mpich/include -I/Users/kongf/projects/miniconda3/envs/moose-mpich/include -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -lmpifort -lmpi -lpmpi Trying FC compiler flag -fPIC for PIC code Executing: mpif90 -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.F90 Successful compile: Source: program main end Output from compiling with -fPIC Added FC compiler flag -fPIC ===== Checking linker Executing: mpif90 -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.F90 Successful compile: Source: function foo(a) real:: a,x,bar common /xx/ x x=a foo = bar(x) end Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o Possible ERROR while running linker: stderr: ld: warning: object file (/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o) was built for newer OSX version (10.14) than being linked (10.9) Linker output before filtering: ld: warning: object file (/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o) was built for newer OSX version (10.14) than being linked (10.9) : Linker output after filtering: ld: warning: object file (/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o) was built for newer OSX version (10.14) than being linked (10.9): Rejected FC compiler flag -fPIC because shared linker cannot handle it Trying FC for PIC code without any compiler flag Executing: mpif90 -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.F90 Successful compile: Source: program main end Output from compiling with ===== Checking linker Executing: mpif90 -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.F90 Successful compile: Source: function foo(a) real:: a,x,bar common /xx/ x x=a foo = bar(x) end Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o Possible ERROR while running linker: stderr: ld: warning: object file (/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o) was built for newer OSX version (10.14) than being linked (10.9) Linker output before filtering: ld: warning: object file (/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o) was built for newer OSX version (10.14) than being linked (10.9) : Linker output after filtering: ld: warning: object file (/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o) was built for newer OSX version (10.14) than being linked (10.9): Rejected FC compiler flag because shared linker cannot handle it ============================================================================================= TESTING: checkSharedLinkerPaths from config.setCompilers(config/BuildSystem/config/setCompilers.py:1738) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS Executing: mpicc -V Trying C linker flag -Wl,-rpath, Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest -Wl,-rpath,/Users/kongf/projects/petsc1 -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o Valid C linker flag -Wl,-rpath,/Users/kongf/projects/petsc1 Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS Executing: mpicc -V Trying Cxx linker flag -Wl,-rpath, Executing: mpicxx -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicxx -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest -Wl,-rpath,/Users/kongf/projects/petsc1 -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-rpath,/Users/kongf/projects/petsc1 Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS Executing: mpicc -V Trying FC linker flag -Wl,-rpath, Executing: mpif90 -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: mpif90 -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest -Wl,-rpath,/Users/kongf/projects/petsc1 -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o Valid FC linker flag -Wl,-rpath,/Users/kongf/projects/petsc1 ============================================================================================= TESTING: checkLibC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1777) Test whether we need to explicitly include libc in shared linking - Mac OSX requires an explicit reference to libc for shared linking ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {void *chunk = malloc(31); free(chunk); return 0;} Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o Shared linking does not require an explicit libc reference ============================================================================================= TESTING: checkDynamicLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1823) Check that the linker can dynamicaly load shared libraries Checking for header: dlfcn.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_DLFCN_H" to "1" Checking for functions [dlopen dlsym dlclose] in library ['dl'] [] ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } char dlsym(); static void _check_dlsym() { dlsym(); } char dlclose(); static void _check_dlclose() { dlclose(); } int main() { _check_dlopen(); _check_dlsym(); _check_dlclose();; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -ldl Defined "HAVE_LIBDL" to "1" Adding ['dl'] to LIBS Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS Checking dynamic linker mpicc using flags ['-dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress'] Checking for program /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/mpicc...found Defined make macro "DYNAMICLINKER" to "mpicc" Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -ldl Valid C linker flag -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("test");return 0;} Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -ldl ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { void *handle = dlopen("/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/libconftest.dylib", 0); int (*foo)(void) = (int (*)(void)) dlsym(handle, "foo"); if (!foo) { printf("Could not load symbol\n"); return -1; } if ((*foo)()) { printf("Invalid return from foo()\n"); return -1; } if (dlclose(handle)) { printf("Could not close library\n"); return -1; } ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -ldl Using dynamic linker mpicc with flags ['-dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress'] and library extension dylib ============================================================================================= TESTING: output from config.setCompilers(config/BuildSystem/config/setCompilers.py:1872) Output module data as defines and substitutions Substituting "CC" with "mpicc" Substituting "CFLAGS" with " -fPIC" Defined make macro "CC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "CPP" with "mpicc -E" Substituting "CPPFLAGS" with "" Substituting "CXX" with "mpicxx" Substituting "CXX_CXXFLAGS" with " -fPIC" Substituting "CXXFLAGS" with "" Substituting "CXX_LINKER_SLFLAG" with "-Wl,-rpath," Substituting "CXXPP" with "mpicxx -E" Substituting "CXXPPFLAGS" with "" Substituting "FC" with "mpif90" Substituting "FFLAGS" with "" Defined make macro "FC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "LDFLAGS" with "" Substituting "LIBS" with "-ldl " Substituting "SHARED_LIBRARY_FLAG" with "-dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress" child config.setCompilers 9.530277 ============================================================================================= TESTING: configureIndexSize from PETSc.options.indexTypes(config/PETSc/options/indexTypes.py:39) Defined "USE_64BIT_INDICES" to "1" Checking for functions [__floatdidf] in library ['-lgcc_s.1'] [] ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char __floatdidf(); static void _check___floatdidf() { __floatdidf(); } int main() { _check___floatdidf();; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -lgcc_s.1 -ldl Defined "HAVE_LIBGCC_S_1" to "1" Defined make macro "PETSC_INDEX_SIZE" to "64" child PETSc.options.indexTypes 0.179617 ============================================================================================= TESTING: configureCompilerFlags from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:82) Get the default compiler flags Defined make macro "C_VERSION" to "clang version 9.0.1 " Defined make macro "MPICC_SHOW" to "x86_64-apple-darwin13.4.0-clang -march=core2 -mtune=haswell -Wl,-rpath,/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -Wl,-commons,use_dylibs -I/Users/kongf/projects/miniconda3/envs/moose-mpich/include -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -lmpi -lpmpi" Trying C compiler flag -Wall Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -fPIC -Wall /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -Wall Added C compiler flag -Wall Trying C compiler flag -Wwrite-strings Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -fPIC -Wall -Wwrite-strings /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -Wall -Wwrite-strings Added C compiler flag -Wwrite-strings Trying C compiler flag -Wno-strict-aliasing Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing Added C compiler flag -Wno-strict-aliasing Trying C compiler flag -Wno-unknown-pragmas Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas Added C compiler flag -Wno-unknown-pragmas Trying C compiler flag -fstack-protector Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector Added C compiler flag -fstack-protector Trying C compiler flag -mfp16-format=ieee Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -mfp16-format=ieee /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 1 stderr: clang-9: error: unknown argument: '-mfp16-format=ieee' Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -mfp16-format=ieee clang-9: error: unknown argument: '-mfp16-format=ieee' PETSc Error: No output file produced Rejecting compiler flag -mfp16-format=ieee due to nonzero status from link Rejecting compiler flag -mfp16-format=ieee due to clang-9: error: unknown argument: '-mfp16-format=ieee' PETSc Error: No output file produced Rejected C compiler flag -mfp16-format=ieee Trying C compiler flag -Qunused-arguments Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments Added C compiler flag -Qunused-arguments Trying C compiler flag -fvisibility=hidden Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden Added C compiler flag -fvisibility=hidden Defined make macro "MPICC_SHOW" to "x86_64-apple-darwin13.4.0-clang -march=core2 -mtune=haswell -Wl,-rpath,/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -Wl,-commons,use_dylibs -I/Users/kongf/projects/miniconda3/envs/moose-mpich/include -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -lmpi -lpmpi" Trying C compiler flag -g Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g Added C compiler flag -g Trying C compiler flag -O3 Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 Added C compiler flag -O3 Defined make macro "Cxx_VERSION" to "clang version 9.0.1 " Defined make macro "MPICXX_SHOW" to "x86_64-apple-darwin13.4.0-clang++ -march=core2 -mtune=haswell -Wl,-rpath,/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -Wl,-commons,use_dylibs -I/Users/kongf/projects/miniconda3/envs/moose-mpich/include -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -lmpicxx -lmpi -lpmpi" Trying Cxx compiler flag -Wall Executing: mpicxx -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -Wall -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Wall Added Cxx compiler flag -Wall Trying Cxx compiler flag -Wwrite-strings Executing: mpicxx -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -Wall -Wwrite-strings -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Wall -Wwrite-strings Added Cxx compiler flag -Wwrite-strings Trying Cxx compiler flag -Wno-strict-aliasing Executing: mpicxx -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Wall -Wwrite-strings -Wno-strict-aliasing Added Cxx compiler flag -Wno-strict-aliasing Trying Cxx compiler flag -Wno-unknown-pragmas Executing: mpicxx -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas Added Cxx compiler flag -Wno-unknown-pragmas Trying Cxx compiler flag -fstack-protector Executing: mpicxx -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector Added Cxx compiler flag -fstack-protector Trying Cxx compiler flag -fvisibility=hidden Executing: mpicxx -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden Added Cxx compiler flag -fvisibility=hidden Defined make macro "MPICXX_SHOW" to "x86_64-apple-darwin13.4.0-clang++ -march=core2 -mtune=haswell -Wl,-rpath,/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -Wl,-commons,use_dylibs -I/Users/kongf/projects/miniconda3/envs/moose-mpich/include -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -lmpicxx -lmpi -lpmpi" Trying Cxx compiler flag -g Executing: mpicxx -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g Added Cxx compiler flag -g Trying Cxx compiler flag -O3 Executing: mpicxx -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O3 -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O3 Added Cxx compiler flag -O3 Defined make macro "FC_VERSION" to "GNU Fortran (GCC) 7.3.0" Defined make macro "MPIFC_SHOW" to "x86_64-apple-darwin13.4.0-gfortran -march=core2 -mtune=haswell -Wl,-rpath,/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -Wl,-commons,use_dylibs -I/Users/kongf/projects/miniconda3/envs/moose-mpich/include -I/Users/kongf/projects/miniconda3/envs/moose-mpich/include -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -lmpifort -lmpi -lpmpi" Trying FC compiler flag -Wall Executing: mpif90 -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -Wall /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.F90 Successful compile: Source: program main end Output from compiling with -Wall Added FC compiler flag -Wall Trying FC compiler flag -ffree-line-length-0 Executing: mpif90 -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -Wall -ffree-line-length-0 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.F90 Successful compile: Source: program main end Output from compiling with -Wall -ffree-line-length-0 Added FC compiler flag -ffree-line-length-0 Trying FC compiler flag -Wno-unused-dummy-argument Executing: mpif90 -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.F90 Successful compile: Source: program main end Output from compiling with -Wall -ffree-line-length-0 -Wno-unused-dummy-argument Added FC compiler flag -Wno-unused-dummy-argument Defined make macro "MPIFC_SHOW" to "x86_64-apple-darwin13.4.0-gfortran -march=core2 -mtune=haswell -Wl,-rpath,/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -Wl,-commons,use_dylibs -I/Users/kongf/projects/miniconda3/envs/moose-mpich/include -I/Users/kongf/projects/miniconda3/envs/moose-mpich/include -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -lmpifort -lmpi -lpmpi" Trying FC compiler flag -g Executing: mpif90 -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.F90 Successful compile: Source: program main end Output from compiling with -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g Added FC compiler flag -g Trying FC compiler flag -O Executing: mpif90 -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.F90 Successful compile: Source: program main end Output from compiling with -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O Added FC compiler flag -O ============================================================================================= TESTING: checkIntelHardwareSupport from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:173) Use Linux/MacOS commands to determine what operations the hardware supports Executing: lscpu Executing: sysctl -a stdout: user.cs_path: /usr/bin:/bin:/usr/sbin:/sbin user.bc_base_max: 99 user.bc_dim_max: 2048 user.bc_scale_max: 99 user.bc_string_max: 1000 user.coll_weights_max: 2 user.expr_nest_max: 32 user.line_max: 2048 user.re_dup_max: 255 user.posix2_version: 200112 user.posix2_c_bind: 0 user.posix2_c_dev: 0 user.posix2_char_term: 0 user.posix2_fort_dev: 0 user.posix2_fort_run: 0 user.posix2_localedef: 0 user.posix2_sw_dev: 0 user.posix2_upe: 0 user.stream_max: 20 user.tzname_max: 255 kern.ostype: Darwin kern.osrelease: 18.7.0 kern.osrevision: 199506 kern.version: Darwin Kernel Version 18.7.0: Thu Jun 18 20:50:10 PDT 2020; root:xnu-4903.278.43~1/RELEASE_X86_64 kern.maxvnodes: 263168 kern.maxproc: 2128 kern.maxfiles: 49152 kern.argmax: 262144 kern.securelevel: 0 kern.hostname: Fandes-MacBook-Pro.local kern.hostid: 0 kern.clockrate: { hz = 100, tick = 10000, tickadj = 0, profhz = 100, stathz = 100 } kern.posix1version: 200112 kern.ngroups: 16 kern.job_control: 1 kern.saved_ids: 1 kern.boottime: { sec = 1619711451, usec = 71504 } Thu Apr 29 09:50:51 2021 kern.nisdomainname: kern.maxfilesperproc: 24576 kern.maxprocperuid: 1418 kern.ipc.maxsockbuf: 8388608 kern.ipc.sockbuf_waste_factor: 8 kern.ipc.somaxconn: 128 kern.ipc.nmbclusters: 65536 kern.ipc.soqlimitcompat: 1 kern.ipc.mleak_sample_factor: 500 kern.ipc.mb_normalized: 0 kern.ipc.mb_watchdog: 0 kern.ipc.mb_drain_force: 0 kern.ipc.mb_drain_maxint: 0 kern.ipc.socket_debug: 0 kern.ipc.sodefunct_calls: 0 kern.ipc.sosendminchain: 16384 kern.ipc.sorecvmincopy: 16384 kern.ipc.sosendjcl: 1 kern.ipc.sosendjcl_ignore_capab: 0 kern.ipc.sosendbigcl_ignore_capab: 0 kern.ipc.sodefunctlog: 0 kern.ipc.sothrottlelog: 0 kern.ipc.sorestrictrecv: 1 kern.ipc.sorestrictsend: 1 kern.ipc.soreserveheadroom: 1 kern.ipc.maxextbkidleperproc: 1 kern.ipc.extbkidletime: 600 kern.ipc.extbkidlercvhiwat: 131072 kern.ipc.sotcdb: 0 kern.ipc.throttle_best_effort: 0 kern.ipc.njcl: 21840 kern.ipc.njclbytes: 16384 kern.ipc.soqlencomp: 0 kern.ipc.sbmb_cnt: 1 kern.ipc.sbmb_cnt_peak: 28003 kern.ipc.sbmb_cnt_floor: 0 kern.ipc.sbmb_limreached: 0 kern.ipc.io_policy.log: 0 kern.ipc.io_policy.uuid: 1 kern.ipc.maxsendmsgx: 100 kern.ipc.maxrecvmsgx: 100 kern.usrstack: -300929024 kern.netboot: 0 kern.sysv.shmmax: 4194304 kern.sysv.shmmin: 1 kern.sysv.shmmni: 32 kern.sysv.shmseg: 8 kern.sysv.shmall: 1024 kern.sysv.semmni: 87381 kern.sysv.semmns: 87381 kern.sysv.semmnu: 87381 kern.sysv.semmsl: 87381 kern.sysv.semume: 10 kern.aiomax: 90 kern.aioprocmax: 16 kern.aiothreads: 4 kern.corefile: /cores/core.%P kern.coredump: 1 kern.sugid_coredump: 0 kern.delayterm: 0 kern.shreg_private: 0 kern.posix.sem.max: 10000 kern.usrstack64: 140732892459008 kern.tfp.policy: 2 kern.procname: sysctl kern.speculative_reads_disabled: 0 kern.osversion: 18G6020 kern.safeboot: 0 kern.rage_vnode: 0 kern.tty.ptmx_max: 511 kern.threadname: kern.dtrace.err_verbose: 0 kern.dtrace.buffer_memory_maxsize: 5726623061 kern.dtrace.buffer_memory_inuse: 0 kern.dtrace.difo_maxsize: 262144 kern.dtrace.dof_maxsize: 524288 kern.dtrace.global_maxsize: 16384 kern.dtrace.provide_private_probes: 0 kern.dtrace.dof_mode: 1 kern.dtrace.ignore_fbt_blacklist: 0 kern.nbuf: 16384 kern.maxnbuf: 16384 kern.monotonic.supported: 1 kern.monotonic.pmis: 1210 0 kern.monotonic.retrograde_updates: 1218 0 kern.monotonic.task_thread_counting: 1 kern.flush_cache_on_write: 0 kern.wq_stalled_window_usecs: 200 kern.wq_reduce_pool_window_usecs: 5000000 kern.wq_max_timer_interval_usecs: 50000 kern.wq_max_threads: 512 kern.wq_max_constrained_threads: 64 kern.kdbg.experimental_continuous: 0 kern.kdbg.debug: 0 kern.kdbg.oldest_time: 0 kern.ds_supgroups_supported: 1 kern.sugid_scripts: 0 kern.zleak.active: 0 kern.zleak.max_zonemap_size: 6442450944 kern.zleak.global_threshold: 3221225472 kern.zleak.zone_threshold: 402653184 kern.uuid: BB828521-3DD9-3ECC-9FA2-3C3ED1848228 kern.osproductversion: 10.14.6 kern.bootargs: kern.kernelcacheuuid: 55FA6EEF-414B-2993-048F-49F164867231 kern.num_files: 4249 kern.num_vnodes: 263168 kern.num_tasks: 4096 kern.num_threads: 20480 kern.num_taskthreads: 4096 kern.num_recycledvnodes: 1533707 kern.namecache_disabled: 0 kern.sched_enable_smt: 1 kern.sched_allow_NO_SMT_threads: 1 kern.preheat_max_bytes: 1048576 kern.preheat_min_bytes: 32768 kern.speculative_prefetch_max: 201326592 kern.speculative_prefetch_max_iosize: 524288 kern.vm_page_free_target: 4000 kern.vm_page_free_min: 3500 kern.vm_page_free_reserved: 776 kern.vm_page_speculative_percentage: 5 kern.vm_page_speculative_q_age_ms: 500 kern.vm_max_delayed_work_limit: 32 kern.vm_max_batch: 256 kern.bootsessionuuid: 9AE75620-FF7D-49AF-87CC-A8E00023B440 kern.timer.coalescing_enabled: 1 kern.timer.deadline_tracking_bin_1: 2000000 kern.timer.deadline_tracking_bin_2: 5000000 kern.timer.longterm.threshold: 1000 kern.timer.longterm.scan_limit: 100000 kern.timer.longterm.scan_interval: 100000 kern.timer.longterm.qlen: 189 kern.timer.longterm.scan_pauses: 9 kern.singleuser: 0 kern.minimalboot: 0 kern.affinity_sets_enabled: 1 kern.affinity_sets_mapping: 1 kern.slide: 1 kern.ipc_voucher_trace_contents: 0 kern.stack_size: 16384 kern.stack_depth_max: 10152 kern.kern_feature_overrides: 0 kern.ipc_portbt: 0 kern.sched: dualq kern.timer_coalesce_bg_scale: -5 kern.timer_resort_threshold_ns: 50000000 kern.timer_coalesce_bg_ns_max: 100000000 kern.timer_coalesce_kt_scale: 3 kern.timer_coalesce_kt_ns_max: 1000000 kern.timer_coalesce_fp_scale: 3 kern.timer_coalesce_fp_ns_max: 1000000 kern.timer_coalesce_ts_scale: 3 kern.timer_coalesce_ts_ns_max: 1000000 kern.timer_coalesce_tier0_scale: 3 kern.timer_coalesce_tier0_ns_max: 1000000 kern.timer_coalesce_tier1_scale: 2 kern.timer_coalesce_tier1_ns_max: 5000000 kern.timer_coalesce_tier2_scale: 1 kern.timer_coalesce_tier2_ns_max: 20000000 kern.timer_coalesce_tier3_scale: -2 kern.timer_coalesce_tier3_ns_max: 75000000 kern.timer_coalesce_tier4_scale: -15 kern.timer_coalesce_tier4_ns_max: 10000000000 kern.timer_coalesce_tier5_scale: -15 kern.timer_coalesce_tier5_ns_max: 10000000000 kern.hv_support: 1 kern.thread_groups_supported: 0 kern.memorystatus_sysprocs_idle_delay_time: 0 kern.memorystatus_apps_idle_delay_time: 0 kern.jetsam_aging_policy: 1 kern.memorystatus_purge_on_warning: 2 kern.memorystatus_purge_on_urgent: 5 kern.memorystatus_purge_on_critical: 8 kern.msgbuf: 16384 kern.eventhandler.debug: 0 kern.secure_kernel: 0 kern.skywalk.ring_stat_enable: 0 kern.skywalk.flowswitch.multistack.ipfm_frag_ttl: 60 kern.skywalk.flowswitch.multistack.ipfm_timeout_tcall_ival: 1 kern.skywalk.flowswitch.multistack.flow_route_expire: 600 kern.interrupt_timer_coalescing_enabled: 1 kern.timer_coalesce_idle_entry_hard_deadline_max: 5000000 kern.pmtimeout: 0 kern.wake_abs_time: 189608231018741 kern.sleep_abs_time: 189608010452934 kern.useractive_abs_time: 189608337271643 kern.userinactive_abs_time: 187565809814558 kern.sleeptime: { sec = 1620310403, usec = 299212 } Thu May 6 08:13:23 2021 kern.waketime: { sec = 1620311017, usec = 24 } Thu May 6 08:23:37 2021 kern.willshutdown: 0 kern.iokittest: 0 kern.progressmeterenable: 0 kern.progressmeter: 1023 kern.wakereason: EC.LidOpen kern.consoleoptions: 0 kern.hibernatefile: /var/vm/sleepimage kern.bootsignature: 13bf6a6a9d014193bb512d34ea9c4a65f819d832 kern.hibernatemode: 0 kern.hibernategraphicsready: 0 kern.hibernatewakenotification: 0 kern.hibernatelockscreenready: 0 kern.hibernatehidready: 0 kern.pthread_mutex_default_policy: 0 kern.hv.vmx_mitigations: 7 kern.hv.vmx_supported_mitigations: 15 vm.loadavg: { 1.32 1.64 1.57 } vm.swapusage: total = 1024.00M used = 333.50M free = 690.50M (encrypted) vm.cs_force_kill: 0 vm.cs_force_hard: 0 vm.cs_debug: 0 vm.cs_debug_fail_on_unsigned_code: 0 vm.cs_debug_unsigned_exec_failures: 0 vm.cs_debug_unsigned_mmap_failures: 0 vm.cs_all_vnodes: 0 vm.cs_system_enforcement: 1 vm.cs_process_enforcement: 0 vm.cs_enforcement_panic: 0 vm.cs_library_validation: 0 vm.global_no_user_wire_amount: 67108864 vm.global_user_wire_limit: 17112760320 vm.user_wire_limit: 17112760320 vm.vm_copy_src_not_internal: 11 vm.vm_copy_src_not_symmetric: 0 vm.vm_copy_src_large: 3 vm.vm_page_external_count: 820353 vm.vm_page_filecache_min: 1190735 vm.vm_page_xpmapped_min: 208371 vm.compressor_input_bytes: 9389596672 vm.compressor_compressed_bytes: 3798243022 vm.compressor_bytes_used: 1255306152 vm.compressor_mode: 4 vm.compressor_is_active: 1 vm.compressor_swapout_target_age: 0 vm.compressor_available: 1 vm.vm_ripe_target_age_in_secs: 172800 vm.compressor_eval_period_in_msecs: 250 vm.compressor_sample_min_in_msecs: 500 vm.compressor_sample_max_in_msecs: 10000 vm.compressor_thrashing_threshold_per_10msecs: 50 vm.compressor_thrashing_min_per_10msecs: 20 vm.swapfileprefix: /private/var/vm/swapfile vm.compressor_timing_enabled: 0 vm.lz4_compressions: 0 vm.lz4_compression_failures: 0 vm.lz4_compressed_bytes: 0 vm.lz4_wk_compression_delta: 0 vm.lz4_wk_compression_negative_delta: 0 vm.lz4_decompressions: 0 vm.lz4_decompressed_bytes: 0 vm.uc_decompressions: 0 vm.wk_compressions: 0 vm.wk_catime: 0 vm.wkh_catime: 0 vm.wkh_compressions: 0 vm.wks_catime: 0 vm.wks_compressions: 0 vm.wk_compressions_exclusive: 0 vm.wk_sv_compressions: 0 vm.wk_mzv_compressions: 0 vm.wk_compression_failures: 0 vm.wk_compressed_bytes_exclusive: 0 vm.wk_compressed_bytes_total: 0 vm.wks_compressed_bytes: 0 vm.wks_compression_failures: 0 vm.wks_sv_compressions: 0 vm.wk_decompressions: 0 vm.wk_datime: 0 vm.wkh_datime: 0 vm.wkh_decompressions: 0 vm.wks_datime: 0 vm.wks_decompressions: 0 vm.wk_decompressed_bytes: 0 vm.wk_sv_decompressions: 0 vm.lz4_threshold: 2048 vm.wkdm_reeval_threshold: 1536 vm.lz4_max_failure_skips: 0 vm.lz4_max_failure_run_length: -1 vm.lz4_max_preselects: 0 vm.lz4_run_preselection_threshold: -1 vm.lz4_run_continue_bytes: 0 vm.lz4_profitable_bytes: 0 vm.vm_page_background_mode: 1 vm.vm_page_background_exclude_external: 0 vm.vm_page_background_target: 50000 vm.vm_page_background_count: 48059 vm.vm_page_background_internal_count: 41678 vm.vm_page_background_external_count: 6381 vm.vm_page_background_promoted_count: 6648319 vm.vm_pageout_considered_bq_internal: 763838 vm.vm_pageout_considered_bq_external: 232593 vm.vm_pageout_rejected_bq_internal: 0 vm.vm_pageout_rejected_bq_external: 0 vm.darkwake_mode: 0 vm.cs_blob_count: 1197 vm.cs_blob_size: 52582640 vm.cs_blob_count_peak: 1217 vm.cs_blob_size_peak: 52588900 vm.cs_blob_size_max: 11206656 vm.vm_do_collapse_compressor: 39 vm.vm_do_collapse_compressor_pages: 1094 vm.vm_do_collapse_terminate: 39 vm.vm_do_collapse_terminate_failure: 0 vm.vm_should_cow_but_wired: 0 vm.vm_create_upl_extra_cow: 0 vm.vm_create_upl_extra_cow_pages: 0 vm.vm_create_upl_lookup_failure_write: 0 vm.vm_create_upl_lookup_failure_copy: 0 vm.vm_debug_events: 0 vm.shared_region_unnest_logging: 1 vm.enforce_shared_cache_dir: 1 vm.shared_region_trace_level: 1 vm.shared_region_version: 3 vm.shared_region_persistence: 0 vm.pagesize: 4096 vm.vm_page_free_target: 4000 vm.memory_pressure: 0 vm.page_free_wanted: 0 vm.page_purgeable_count: 88627 vm.page_purgeable_wired_count: 192 vm.madvise_free_debug: 0 vm.page_reusable_count: 385205 vm.reusable_success: 8075212 vm.reusable_failure: 118839 vm.reusable_pages_shared: 119508 vm.all_reusable_calls: 0 vm.partial_reusable_calls: 8063650 vm.reuse_success: 1671319 vm.reuse_failure: 0 vm.all_reuse_calls: 0 vm.partial_reuse_calls: 1776586 vm.can_reuse_success: 13896557 vm.can_reuse_failure: 664290 vm.reusable_reclaimed: 0 vm.reusable_nonwritable: 101895 vm.reusable_shared: 112533 vm.free_shared: 0 vm.page_free_count: 492471 vm.page_speculative_count: 40240 vm.page_cleaned_count: 51 vm.page_pageable_internal_count: 1877551 vm.page_pageable_external_count: 816134 vm.pageout_inactive_clean: 8569413 vm.pageout_inactive_used: 1444848 vm.pageout_inactive_dirty_internal: 2292513 vm.pageout_inactive_dirty_external: 4714 vm.pageout_speculative_clean: 7525132 vm.pageout_freed_external: 267397 vm.pageout_freed_speculative: 7525132 vm.pageout_freed_cleaned: 7676 vm.prefault_nb_pages: 0 vm.prefault_nb_bailout: 0 vm.vm_clump_promote_threshold: 4 vm.vm_min_kernel_address: 18446743521806254080 vm.vm_max_kernel_address: 18446744073709547519 vm.pages: 4103840 vm.page_busy_absent_skipped: 0 vm.corpse_footprint_count: 16 vm.corpse_footprint_size_avg: 172441 vm.corpse_footprint_size_max: 469576 vm.corpse_footprint_full: 0 vm.corpse_footprint_no_buf: 0 vm.shared_region_pager_copied: 0 vm.shared_region_pager_slid: 24109 vm.shared_region_pager_slid_error: 0 vm.shared_region_pager_reclaimed: 6242 vfs.generic.maxtypenum: 29 vfs.generic.nfs.client.initialdowndelay: 12 vfs.generic.nfs.client.nextdowndelay: 30 vfs.generic.nfs.client.iosize: 1048576 vfs.generic.nfs.client.access_cache_timeout: 60 vfs.generic.nfs.client.allow_async: 0 vfs.generic.nfs.client.statfs_rate_limit: 10 vfs.generic.nfs.client.nfsiod_thread_max: 16 vfs.generic.nfs.client.nfsiod_thread_count: 0 vfs.generic.nfs.client.lockd_mounts: 0 vfs.generic.nfs.client.max_async_writes: 128 vfs.generic.nfs.client.access_delete: 1 vfs.generic.nfs.client.access_dotzfs: 1 vfs.generic.nfs.client.access_for_getattr: 0 vfs.generic.nfs.client.idmap_ctrl: 1 vfs.generic.nfs.client.callback_port: 0 vfs.generic.nfs.client.is_mobile: 1 vfs.generic.nfs.client.squishy_flags: 11 vfs.generic.nfs.client.debug_ctl: 0 vfs.generic.nfs.client.readlink_nocache: 0 vfs.generic.nfs.client.root_steals_gss_context: 0 vfs.generic.nfs.client.default_nfs4domain: vfs.generic.nfs.server.wg_delay: 1000 vfs.generic.nfs.server.wg_delay_v3: 0 vfs.generic.nfs.server.require_resv_port: 0 vfs.generic.nfs.server.async: 0 vfs.generic.nfs.server.export_hash_size: 64 vfs.generic.nfs.server.reqcache_size: 64 vfs.generic.nfs.server.request_queue_length: 128 vfs.generic.nfs.server.user_stats: 1 vfs.generic.nfs.server.gss_context_ttl: 28800 vfs.generic.nfs.server.fsevents: 1 vfs.generic.nfs.server.nfsd_thread_max: 0 vfs.generic.nfs.server.nfsd_thread_count: 0 vfs.generic.nfs.server.nfsd_sock_idle_timeout: 3600 vfs.generic.nfs.server.nfsd_tcp_connections: 0 vfs.generic.nfs.server.use_upcall_svc: 1 vfs.generic.nfs.server.upcall_queue_limit: 0 vfs.generic.nfs.server.upcall_queue_max_seen: 0 vfs.generic.nfs.server.upcall_queue_count: 0 vfs.generic.sync_timeout: 5 vfs.generic.root_unmounted_cleanly: 1 vfs.generic.hfs.kdebug.allocation: 0 vfs.generic.hfs.jnl.trim_flush: 240 vfs.generic.hfs.jnl.kdebug.trim: 0 vfs.generic.hfs.allocated: 2826780 vfs.generic.always_do_fullfsync: 0 vfs.generic.apfs.fusion_rc_promotion_size_limit_mb: 4096 vfs.generic.apfs.fusion_rc_flags: 0 vfs.generic.apfs.fusion_w2rc_filled_ratio_threshold: 50 vfs.generic.apfs.fusion_lc_rc_promotion_threshold_mult: 8 vfs.generic.apfs.fusion_rc_promotion_threshold_mult: 4 vfs.generic.apfs.fusion_wbc_buffersize: 16777216 vfs.generic.apfs.fusion_verbosity_flags: 0 vfs.generic.apfs.fusion_paranoia_level: 0 vfs.generic.apfs.fusion_swapfile_backoff: 4 vfs.generic.apfs.fusion_elevator_throttle: 100 vfs.generic.apfs.fusion_promoter_throttle: 100 vfs.generic.apfs.fusion_promoter_queue_limit: 1000 vfs.generic.apfs.fusion_wbc_elevator_wmk: 0 vfs.generic.apfs.fusion_wbc_backoff_wmk_reenable: 25 vfs.generic.apfs.fusion_wbc_backoff_wmk_med: 95 vfs.generic.apfs.fusion_wbc_backoff_wmk_low: 60 vfs.generic.apfs.allocated: 180856231 vfs.generic.box.control.kill: -1 vfs.generic.box.control.print_vnodes: -1 vfs.generic.box.control.tunables_initialized: 1 vfs.generic.box.counters.filehandle_reuse: 0 vfs.generic.box.counters.filehandle_upcalls: 0 vfs.generic.box.counters.lookup_cache_hits: 0 vfs.generic.box.counters.lookup_cache_misses: 0 vfs.generic.box.counters.lookup_cache_overrides: 0 vfs.generic.box.counters.memory_reallocs: 0 vfs.generic.box.resourceusage.filehandles: 0 vfs.generic.box.resourceusage.filehandles_zombies: 0 vfs.generic.box.resourceusage.ipc_iovs: 0 vfs.generic.box.resourceusage.ipc_tickets: 0 vfs.generic.box.resourceusage.memory_bytes: 0 vfs.generic.box.resourceusage.mounts: 0 vfs.generic.box.resourceusage.vnodes: 0 vfs.generic.box.tunables.admin_group: 80 vfs.generic.box.tunables.allow_other: 0 vfs.generic.box.tunables.iov_credit: 16 vfs.generic.box.tunables.iov_permanent_bufsize: 524288 vfs.generic.box.tunables.max_freetickets: 1024 vfs.generic.box.tunables.max_tickets: 0 vfs.generic.box.tunables.userkernel_bufsize: 33554432 vfs.generic.box.version.abi_major: 7 vfs.generic.box.version.abi_minor: 19 vfs.generic.box.version.number: 313.10.2 vfs.generic.box.version.string: 313.10.2, Jul 10 2020, 11:19:08 vfs.nummntops: 413 net.local.stream.sendspace: 8192 net.local.stream.recvspace: 8192 net.local.stream.tracemdns: 0 net.local.dgram.maxdgram: 2048 net.local.dgram.recvspace: 4096 net.local.inflight: 0 net.inet.ip.portrange.lowfirst: 1023 net.inet.ip.portrange.lowlast: 600 net.inet.ip.portrange.first: 49152 net.inet.ip.portrange.last: 65535 net.inet.ip.portrange.hifirst: 49152 net.inet.ip.portrange.hilast: 65535 net.inet.ip.forwarding: 0 net.inet.ip.redirect: 1 net.inet.ip.ttl: 64 net.inet.ip.rtexpire: 62 net.inet.ip.rtminexpire: 10 net.inet.ip.rtmaxcache: 128 net.inet.ip.sourceroute: 0 net.inet.ip.accept_sourceroute: 0 net.inet.ip.gifttl: 30 net.inet.ip.subnets_are_local: 0 net.inet.ip.mcast.maxgrpsrc: 512 net.inet.ip.mcast.maxsocksrc: 128 net.inet.ip.mcast.loop: 1 net.inet.ip.dummynet.hash_size: 64 net.inet.ip.dummynet.curr_time: 0 net.inet.ip.dummynet.ready_heap: 0 net.inet.ip.dummynet.extract_heap: 0 net.inet.ip.dummynet.searches: 0 net.inet.ip.dummynet.search_steps: 0 net.inet.ip.dummynet.expire: 1 net.inet.ip.dummynet.max_chain_len: 16 net.inet.ip.dummynet.red_lookup_depth: 256 net.inet.ip.dummynet.red_avg_pkt_size: 512 net.inet.ip.dummynet.red_max_pkt_size: 1500 net.inet.ip.dummynet.debug: 0 net.inet.ip.random_id_statistics: 0 net.inet.ip.random_id_collisions: 0 net.inet.ip.random_id_total: 0 net.inet.ip.sendsourcequench: 0 net.inet.ip.maxfragpackets: 2048 net.inet.ip.fragpackets: 0 net.inet.ip.maxfragsperpacket: 128 net.inet.ip.adj_clear_hwcksum: 0 net.inet.ip.adj_partial_sum: 1 net.inet.ip.check_interface: 1 net.inet.ip.checkinterface_debug: 0 net.inet.ip.rx_chaining: 1 net.inet.ip.rx_chainsz: 6 net.inet.ip.linklocal.in.allowbadttl: 1 net.inet.ip.random_id: 1 net.inet.ip.maxchainsent: 53 net.inet.ip.select_srcif_debug: 0 net.inet.ip.output_perf: 0 net.inet.ip.output_perf_bins: 0 net.inet.ip.rfc6864: 1 net.inet.icmp.maskrepl: 0 net.inet.icmp.icmplim: 250 net.inet.icmp.timestamp: 0 net.inet.icmp.drop_redirect: 1 net.inet.icmp.log_redirect: 0 net.inet.icmp.bmcastecho: 1 net.inet.igmp.recvifkludge: 1 net.inet.igmp.sendra: 1 net.inet.igmp.sendlocal: 1 net.inet.igmp.v1enable: 1 net.inet.igmp.v2enable: 1 net.inet.igmp.legacysupp: 0 net.inet.igmp.default_version: 3 net.inet.igmp.gsrdelay: 10 net.inet.igmp.debug: 0 net.inet.tcp.rfc1644: 0 net.inet.tcp.mssdflt: 512 net.inet.tcp.keepidle: 7200000 net.inet.tcp.keepintvl: 75000 net.inet.tcp.sendspace: 131072 net.inet.tcp.recvspace: 131072 net.inet.tcp.keepinit: 75000 net.inet.tcp.v6mssdflt: 1024 net.inet.tcp.backoff_maximum: 65536 net.inet.tcp.ecn_timeout: 60 net.inet.tcp.disable_tcp_heuristics: 0 net.inet.tcp.clear_tfocache: 0 net.inet.tcp.log_in_vain: 0 net.inet.tcp.blackhole: 0 net.inet.tcp.delayed_ack: 3 net.inet.tcp.tcp_lq_overflow: 1 net.inet.tcp.recvbg: 0 net.inet.tcp.drop_synfin: 1 net.inet.tcp.reass.overflows: 1298 net.inet.tcp.slowlink_wsize: 8192 net.inet.tcp.maxseg_unacked: 8 net.inet.tcp.rfc3465: 1 net.inet.tcp.rfc3465_lim2: 1 net.inet.tcp.recv_allowed_iaj: 5 net.inet.tcp.doautorcvbuf: 1 net.inet.tcp.autorcvbufmax: 2097152 net.inet.tcp.lro: 0 net.inet.tcp.lrodbg: 0 net.inet.tcp.lro_startcnt: 4 net.inet.tcp.disable_access_to_stats: 1 net.inet.tcp.challengeack_limit: 10 net.inet.tcp.do_rfc5961: 1 net.inet.tcp.rcvsspktcnt: 512 net.inet.tcp.rexmt_thresh: 3 net.inet.tcp.path_mtu_discovery: 1 net.inet.tcp.slowstart_flightsize: 1 net.inet.tcp.local_slowstart_flightsize: 8 net.inet.tcp.tso: 1 net.inet.tcp.ecn_setup_percentage: 100 net.inet.tcp.ecn_initiate_out: 2 net.inet.tcp.ecn_negotiate_in: 2 net.inet.tcp.packetchain: 50 net.inet.tcp.socket_unlocked_on_output: 1 net.inet.tcp.rfc3390: 1 net.inet.tcp.min_iaj_win: 16 net.inet.tcp.acc_iaj_react_limit: 200 net.inet.tcp.doautosndbuf: 1 net.inet.tcp.autosndbufinc: 8192 net.inet.tcp.autosndbufmax: 2097152 net.inet.tcp.ack_prioritize: 1 net.inet.tcp.rtt_recvbg: 1 net.inet.tcp.recv_throttle_minwin: 16384 net.inet.tcp.enable_tlp: 1 net.inet.tcp.sack: 1 net.inet.tcp.sack_maxholes: 128 net.inet.tcp.sack_globalmaxholes: 65536 net.inet.tcp.sack_globalholes: 0 net.inet.tcp.fastopen_backlog: 10 net.inet.tcp.fastopen: 3 net.inet.tcp.now_init: 466978001 net.inet.tcp.microuptime_init: 1492546 net.inet.tcp.minmss: 216 net.inet.tcp.do_tcpdrain: 0 net.inet.tcp.pcbcount: 43 net.inet.tcp.tw_pcbcount: 0 net.inet.tcp.icmp_may_rst: 1 net.inet.tcp.rtt_min: 100 net.inet.tcp.rexmt_slop: 200 net.inet.tcp.randomize_ports: 0 net.inet.tcp.win_scale_factor: 3 net.inet.tcp.tcbhashsize: 4096 net.inet.tcp.keepcnt: 8 net.inet.tcp.msl: 15000 net.inet.tcp.max_persist_timeout: 0 net.inet.tcp.always_keepalive: 0 net.inet.tcp.timer_fastmode_idlemax: 10 net.inet.tcp.broken_peer_syn_rexmit_thres: 10 net.inet.tcp.tcp_timer_advanced: 145 net.inet.tcp.tcp_resched_timerlist: 46051 net.inet.tcp.pmtud_blackhole_detection: 1 net.inet.tcp.pmtud_blackhole_mss: 1200 net.inet.tcp.cc_debug: 0 net.inet.tcp.newreno_sockets: 0 net.inet.tcp.background_sockets: 0 net.inet.tcp.cubic_sockets: 43 net.inet.tcp.use_newreno: 0 net.inet.tcp.cubic_tcp_friendliness: 0 net.inet.tcp.cubic_fast_convergence: 0 net.inet.tcp.cubic_use_minrtt: 0 net.inet.tcp.lro_sz: 8 net.inet.tcp.lro_time: 10 net.inet.tcp.bg_target_qdelay: 100 net.inet.tcp.bg_allowed_increase: 8 net.inet.tcp.bg_tether_shift: 1 net.inet.tcp.bg_ss_fltsz: 2 net.inet.udp.checksum: 1 net.inet.udp.maxdgram: 9216 net.inet.udp.recvspace: 786896 net.inet.udp.log_in_vain: 0 net.inet.udp.blackhole: 0 net.inet.udp.pcbcount: 56 net.inet.udp.randomize_ports: 1 net.inet.ipsec.def_policy: 1 net.inet.ipsec.esp_trans_deflev: 1 net.inet.ipsec.esp_net_deflev: 1 net.inet.ipsec.ah_trans_deflev: 1 net.inet.ipsec.ah_net_deflev: 1 net.inet.ipsec.ah_cleartos: 1 net.inet.ipsec.ah_offsetmask: 0 net.inet.ipsec.dfbit: 0 net.inet.ipsec.ecn: 0 net.inet.ipsec.debug: 0 net.inet.ipsec.esp_randpad: -1 net.inet.ipsec.bypass: 1 net.inet.ipsec.esp_port: 0 net.inet.log_restricted: 0 net.inet.raw.maxdgram: 8192 net.inet.raw.recvspace: 8192 net.inet.raw.pcbcount: 0 net.inet.mptcp.enable: 1 net.inet.mptcp.mptcp_cap_retr: 2 net.inet.mptcp.dss_csum: 0 net.inet.mptcp.fail: 1 net.inet.mptcp.keepalive: 840 net.inet.mptcp.rtthist_thresh: 600 net.inet.mptcp.userto: 1 net.inet.mptcp.rto_thresh: 1500 net.inet.mptcp.probeto: 1000 net.inet.mptcp.probecnt: 5 net.inet.mptcp.dbg_area: 31 net.inet.mptcp.dbg_level: 1 net.inet.mptcp.pcbcount: 0 net.inet.mptcp.alternate_port: 0 net.inet.mptcp.allow_aggregate: 0 net.inet.mptcp.rto: 3 net.inet.mptcp.nrto: 3 net.inet.mptcp.tw: 60 net.link.generic.system.ifcount: 19 net.link.generic.system.if_verbose: 0 net.link.generic.system.dlil_verbose: 0 net.link.generic.system.sndq_maxlen: 128 net.link.generic.system.rcvq_maxlen: 256 net.link.generic.system.rxpoll_decay: 2 net.link.generic.system.rxpoll_freeze_time: 1000000000 net.link.generic.system.rxpoll_sample_time: 10000000 net.link.generic.system.rxpoll_interval_time: 1000000 net.link.generic.system.rxpoll_interval_pkts: 0 net.link.generic.system.rxpoll_wakeups_lowat: 10 net.link.generic.system.rxpoll_wakeups_hiwat: 100 net.link.generic.system.rxpoll_max: 0 net.link.generic.system.rxpoll: 1 net.link.generic.system.dlil_input_threads: 9 net.link.generic.system.dlil_input_sanity_check: 0 net.link.generic.system.flow_advisory: 1 net.link.generic.system.delaybased_queue: 1 net.link.generic.system.hwcksum_in_invalidated: 0 net.link.generic.system.hwcksum_dbg: 0 net.link.generic.system.start_delayed: 0 net.link.generic.system.start_delay_disabled: 0 net.link.generic.system.hwcksum_dbg_mode: 0 net.link.generic.system.hwcksum_dbg_partial_forced: 0 net.link.generic.system.hwcksum_dbg_partial_forced_bytes: 0 net.link.generic.system.hwcksum_dbg_partial_rxoff_forced: 0 net.link.generic.system.hwcksum_dbg_partial_rxoff_adj: 0 net.link.generic.system.hwcksum_dbg_verified: 0 net.link.generic.system.hwcksum_dbg_bad_cksum: 0 net.link.generic.system.hwcksum_dbg_bad_rxoff: 0 net.link.generic.system.hwcksum_dbg_adjusted: 0 net.link.generic.system.hwcksum_dbg_finalized_hdr: 0 net.link.generic.system.hwcksum_dbg_finalized_data: 0 net.link.generic.system.hwcksum_tx: 1 net.link.generic.system.hwcksum_rx: 1 net.link.generic.system.tx_chain_len_count: 0 net.link.generic.system.threshold_notify: 1 net.link.generic.system.threshold_interval: 2 net.link.generic.system.enable_netagent: 0 net.link.generic.system.port_used.entry_count: 0 net.link.generic.system.port_used.entry_gen: 3 net.link.generic.system.port_used.verbose: 0 net.link.generic.system.port_used.wakeuuid_not_set_count: 33 net.link.generic.system.port_used.wakeuuid_not_set_last_time: { sec = 1619736108, usec = 271459 } Thu Apr 29 16:41:48 2021 net.link.generic.system.port_used.wakeuuid_not_set_last_if: awdl0 net.link.ether.inet.prune_intvl: 300 net.link.ether.inet.probe_intvl: 7 net.link.ether.inet.max_age: 1200 net.link.ether.inet.host_down_time: 20 net.link.ether.inet.arp_llreach_base: 120 net.link.ether.inet.arp_unicast_lim: 3 net.link.ether.inet.maxtries: 5 net.link.ether.inet.maxhold: 16 net.link.ether.inet.useloopback: 1 net.link.ether.inet.proxyall: 0 net.link.ether.inet.sendllconflict: 0 net.link.ether.inet.log_arp_warnings: 0 net.link.ether.inet.keep_announcements: 1 net.link.ether.inet.send_conflicting_probes: 1 net.link.ether.inet.verbose: 0 net.link.bridge.inherit_mac: 0 net.link.bridge.rtable_prune_period: 300 net.link.bridge.rtable_hash_size_max: 2048 net.link.bridge.txstart: 0 net.link.bridge.debug: 0 net.link.loopback.max_dequeue: 256 net.link.loopback.sched_model: 0 net.link.loopback.dequeue_sc: 0 net.link.fake.txstart: 1 net.link.fake.hwcsum: 0 net.link.fake.nxattach: 0 net.link.fake.bsd_mode: 1 net.link.fake.debug: 0 net.link.fake.wmm_mode: 0 net.link.iptap.total_tap_count: 0 net.link.iptap.log: 0 net.link.pktap.total_tap_count: 0 net.link.pktap.count_unknown_if_type: 0 net.link.pktap.log: 0 net.key.debug: 0 net.key.spi_trycnt: 1000 net.key.spi_minval: 256 net.key.spi_maxval: 268435455 net.key.int_random: 60 net.key.larval_lifetime: 30 net.key.blockacq_count: 10 net.key.blockacq_lifetime: 20 net.key.esp_keymin: 256 net.key.esp_auth: 0 net.key.ah_keymin: 128 net.key.prefered_oldsa: 0 net.key.natt_keepalive_interval: 20 net.inet6.ip6.forwarding: 0 net.inet6.ip6.redirect: 1 net.inet6.ip6.hlim: 64 net.inet6.ip6.maxfragpackets: 2048 net.inet6.ip6.accept_rtadv: 1 net.inet6.ip6.keepfaith: 0 net.inet6.ip6.log_interval: 5 net.inet6.ip6.hdrnestlimit: 15 net.inet6.ip6.dad_count: 1 net.inet6.ip6.auto_flowlabel: 1 net.inet6.ip6.defmcasthlim: 1 net.inet6.ip6.gifhlim: 0 net.inet6.ip6.kame_version: 2009/apple-darwin net.inet6.ip6.use_deprecated: 1 net.inet6.ip6.rr_prune: 5 net.inet6.ip6.v6only: 0 net.inet6.ip6.rtexpire: 3600 net.inet6.ip6.rtminexpire: 10 net.inet6.ip6.rtmaxcache: 128 net.inet6.ip6.use_tempaddr: 1 net.inet6.ip6.temppltime: 86400 net.inet6.ip6.tempvltime: 604800 net.inet6.ip6.auto_linklocal: 1 net.inet6.ip6.prefer_tempaddr: 1 net.inet6.ip6.use_defaultzone: 0 net.inet6.ip6.maxfrags: 4096 net.inet6.ip6.mcast_pmtu: 0 net.inet6.ip6.neighborgcthresh: 1024 net.inet6.ip6.maxifprefixes: 16 net.inet6.ip6.maxifdefrouters: 16 net.inet6.ip6.maxdynroutes: 1024 net.inet6.ip6.fragpackets: 0 net.inet6.ip6.adj_clear_hwcksum: 0 net.inet6.ip6.adj_partial_sum: 1 net.inet6.ip6.input_perf: 0 net.inet6.ip6.input_perf_bins: 0 net.inet6.ip6.check_interface: 1 net.inet6.ip6.checkinterface_debug: 0 net.inet6.ip6.output_perf: 0 net.inet6.ip6.output_perf_bins: 0 net.inet6.ip6.select_srcif_debug: 0 net.inet6.ip6.select_srcaddr_debug: 0 net.inet6.ip6.select_src_expensive_secondary_if: 0 net.inet6.ip6.select_src_strong_end: 1 net.inet6.ip6.mcast.maxgrpsrc: 512 net.inet6.ip6.mcast.maxsocksrc: 128 net.inet6.ip6.mcast.loop: 1 net.inet6.ip6.only_allow_rfc4193_prefixes: 0 net.inet6.ip6.clat_debug: 0 net.inet6.ip6.maxchainsent: 18 net.inet6.ip6.dad_enhanced: 1 net.inet6.ipsec6.def_policy: 1 net.inet6.ipsec6.esp_trans_deflev: 1 net.inet6.ipsec6.esp_net_deflev: 1 net.inet6.ipsec6.ah_trans_deflev: 1 net.inet6.ipsec6.ah_net_deflev: 1 net.inet6.ipsec6.ecn: 0 net.inet6.ipsec6.debug: 0 net.inet6.ipsec6.esp_randpad: -1 net.inet6.icmp6.rediraccept: 1 net.inet6.icmp6.redirtimeout: 600 net.inet6.icmp6.nd6_prune: 1 net.inet6.icmp6.nd6_delay: 5 net.inet6.icmp6.nd6_umaxtries: 3 net.inet6.icmp6.nd6_mmaxtries: 3 net.inet6.icmp6.nd6_useloopback: 1 net.inet6.icmp6.nodeinfo: 3 net.inet6.icmp6.errppslimit: 500 net.inet6.icmp6.nd6_debug: 0 net.inet6.icmp6.nd6_accept_6to4: 1 net.inet6.icmp6.nd6_optimistic_dad: 63 net.inet6.icmp6.nd6_onlink_ns_rfc4861: 0 net.inet6.icmp6.nd6_prune_lazy: 5 net.inet6.icmp6.rappslimit: 10 net.inet6.icmp6.nd6_llreach_base: 30 net.inet6.icmp6.nd6_maxsolstgt: 8 net.inet6.icmp6.nd6_maxproxiedsol: 4 net.inet6.icmp6.prproxy_cnt: 0 net.inet6.mld.gsrdelay: 10 net.inet6.mld.v1enable: 1 net.inet6.mld.v2enable: 1 net.inet6.mld.use_allow: 1 net.inet6.mld.debug: 0 net.inet6.send.opmode: 1 net.inet6.send.opstate: 1 net.systm.kctl.autorcvbufmax: 262144 net.systm.kctl.autorcvbufhigh: 0 net.systm.kctl.debug: 0 net.ndrv_multi_max_count: 1024 net.statistics_privcheck: 0 net.stats.debug: 0 net.stats.sendspace: 2048 net.stats.recvspace: 8192 net.utun.ring_size: 64 net.utun.tx_fsw_ring_size: 64 net.utun.rx_fsw_ring_size: 128 net.ipsec.verify_interface_creation: 0 net.ipsec.ring_size: 64 net.ipsec.tx_fsw_ring_size: 64 net.ipsec.rx_fsw_ring_size: 128 net.necp.drop_all_level: 0 net.necp.debug: 0 net.necp.pass_loopback: 1 net.necp.pass_keepalives: 1 net.necp.socket_policy_count: 24 net.necp.socket_non_app_policy_count: 24 net.necp.ip_policy_count: 10 net.necp.session_count: 5 net.necp.client_fd_count: 82 net.necp.client_count: 123 net.necp.arena_count: 0 net.necp.nexus_flow_count: 0 net.necp.socket_flow_count: 23 net.necp.if_flow_count: 0 net.necp.observer_fd_count: 0 net.necp.observer_message_limit: 256 net.necp.sysctl_arena_count: 0 net.netagent.debug: 5 net.netagent.registered_count: 14 net.netagent.active_count: 13 net.cfil.log: 3 net.cfil.debug: 1 net.cfil.sock_attached_count: 0 net.cfil.active_count: 0 net.cfil.close_wait_timeout: 1000 net.cfil.sbtrim: 1 net.classq.verbose: 0 net.classq.sfb.holdtime: 0 net.classq.sfb.pboxtime: 0 net.classq.sfb.hinterval: 0 net.classq.sfb.increment: 82 net.classq.sfb.decrement: 16 net.classq.sfb.allocation: 0 net.classq.sfb.ratelimit: 0 net.classq.target_qdelay: 0 net.classq.update_interval: 0 net.pktsched.verbose: 0 net.qos.reset_dscp_to_wifi_ac_map: 0 net.qos.verbose: 0 net.qos.policy.restricted: 0 net.qos.policy.restrict_avapps: 0 net.qos.policy.wifi_enabled: 0 net.qos.policy.none_wifi_enabled: 0 net.qos.policy.capable_enabled: 0 net.alf.loglevel: 55 net.alf.perm: 0 net.alf.defaultaction: 1 net.alf.mqcount: 0 debug.lowpri_throttle_max_iosize: 131072 debug.lowpri_throttle_tier1_window_msecs: 25 debug.lowpri_throttle_tier2_window_msecs: 100 debug.lowpri_throttle_tier3_window_msecs: 500 debug.lowpri_throttle_tier1_io_period_msecs: 40 debug.lowpri_throttle_tier2_io_period_msecs: 85 debug.lowpri_throttle_tier3_io_period_msecs: 200 debug.lowpri_throttle_tier1_io_period_ssd_msecs: 5 debug.lowpri_throttle_tier2_io_period_ssd_msecs: 15 debug.lowpri_throttle_tier3_io_period_ssd_msecs: 25 debug.lowpri_throttle_enabled: 1 debug.bpf_bufsize: 4096 debug.bpf_maxbufsize: 524288 debug.bpf_maxdevices: 256 debug.bpf_wantpktap: 0 debug.bpf_debug: 0 debug.sched: 2 debug.toggle_address_reuse: 0 debug.kextlog: 4083 debug.swd_kext_name: debug.swd_delay_type: debug.swd_delay_duration: 0 debug.iotrace: 0 debug.noidle: 0 debug.darkwake: 3 debug.swd_panic: 0 debug.swd_timeout: 0 debug.swd_wake_timeout: 0 debug.swd_sleep_timeout: 0 debug.acpi_flags: 0 debug.acpi_layer: 0 debug.acpi_level: 0 debug.iokit: 0 debug.batman: 3 debug.brcmfirewirelog: 0 debug.brcmlinkdebug: 0 debug.brcmlogging: 0 debug.iosk_debug: 0 debug.iosk_poll_enable: 1 debug.iosk_pool_alloc_retry_interval: 2000 debug.iosk_doorbell_limit: 0 debug.wdtlog: 196431m1/0196471m1/0196491m1/0196511m1/0196531m1/0196551m1/0196591m1/0196631m1/0196651m1/0196671m1/0196691m1/0196711m1/0196751m1/0196771m1/0196811m1/0196851m1/0196871m1/0196891m1/0196911m1/0196931m1/0196951m1/0196971m1/0196991m1/0197011m1/0197031m1/0197051m1/0197091m1/0197111m1/0197131m1/0197151m1/0197191m1/0197231m1/0 debug.intelfb.graphicsTracePointEnable: 0 debug.intelfb.IGInterruptControl: 0 debug.intelfb.fLastRequestedPState: 0 debug.intelfb.forceSlicesGTx: 0 debug.intelfb.forceSlicesEUx: 0 debug.intelfb.sliceInfo: 4 debug.intelfb.euInfo: 8 debug.intelfb.testCase: 0 debug.intelfb.temp0: 0 debug.intelfb.temp1: 0 debug.intelfb.temp2: 0 debug.intelfb.temp3: 0 debug.intelfb.temp4: 0 debug.intelfb.FakeType2Dongle: 0 debug.intelfb.forceDither: 0 debug.intelfb.enableDECounting: 0 debug.intelfb.enableGTHWFreqRead: 0 debug.ioppf: 0 debug.intel.kdctlVersion: 2004307984 debug.intel.graphicsTracePointEnable: 0 debug.intel.IGInterruptControl: 0 debug.intel.perfEventEnable: 0 debug.intel.dtraceEnable: 0 debug.intel.oaEnable: 1 debug.intel.gpuUsageEnables: 15 debug.intel.gpuUsageEnablesCheck: 0 debug.intel.flipCount: 0 debug.intel.swapCount: 0 debug.intel.ringTakeSample: 0 debug.intel.ringOnSample: 0 debug.intel.GlobalUsageTotal_Busy_nSec: 0 debug.intel.GlobalUsageTotal_nSec: 0 debug.intel.ringMainUsage: 0 debug.intel.ringMediaUsage: 0 debug.intel.ringBlitUsage: 0 debug.intel.ringVEBoxUsage: 0 debug.intel.ringMain_nSec: 0 debug.intel.ringMedia_nSec: 0 debug.intel.ringBlit_nSec: 0 debug.intel.ringVEBox_nSec: 0 debug.intel.mSecCalcGPUBusy: 1000 debug.intel.schedPriCreditsHigh: -1 debug.intel.schedPriCreditsNormalHigh: -1 debug.intel.schedPriCreditsNormal: -1 debug.intel.schedPriCreditsLow: -1 debug.intel.schedPriPreemption: 1 debug.intel.schedPriElevatePID: -1 debug.intel.schedEnableThrottleOverride: 0 debug.intel.schedThrottleLowPriByVal: -1 debug.intel.schedThrottleNormalPriByVal: -1 debug.intel.schedThrottleNormalHighPriByVal: -1 debug.intel.schedThrottleHighPriByVal: -1 debug.intel.graphicsFirmwareTracePointEnable: 0 debug.intel.telemetryUsageReportmSec: 1000 debug.intel.telemetryVersion: 1 debug.intel.telemetryConfig: 4101 debug.intel.telemetryMode: 0 debug.intel.telemetrySampleLocations: 0 debug.intel.telemetryStartFrame: 0 debug.intel.telemetryStopFrame: 0 debug.intel.telemetryNumFrame: 0 debug.intel.telemetryTestCase: 0 debug.intel.telemetrySpot1: 0 debug.intel.telemetryStatPasses: 0 debug.intel.telemetryAltConfig: 0 debug.intel.temp0: 0 debug.intel.temp1: 0 debug.intel.temp2: 0 debug.intel.temp3: 0 debug.intel.temp4: 0 hw.ncpu: 8 hw.byteorder: 1234 hw.memsize: 17179869184 hw.activecpu: 8 hw.physicalcpu: 4 hw.physicalcpu_max: 4 hw.logicalcpu: 8 hw.logicalcpu_max: 8 hw.cputype: 7 hw.cpusubtype: 8 hw.cpu64bit_capable: 1 hw.cpufamily: 939270559 hw.cacheconfig: 8 2 2 8 0 0 0 0 0 0 hw.cachesize: 17179869184 32768 262144 8388608 0 0 0 0 0 0 hw.pagesize: 4096 hw.pagesize32: 4096 hw.busfrequency: 100000000 hw.busfrequency_min: 100000000 hw.busfrequency_max: 100000000 hw.cpufrequency: 2900000000 hw.cpufrequency_min: 2900000000 hw.cpufrequency_max: 2900000000 hw.cachelinesize: 64 hw.l1icachesize: 32768 hw.l1dcachesize: 32768 hw.l2cachesize: 262144 hw.l3cachesize: 8388608 hw.tbfrequency: 1000000000 hw.packages: 1 hw.optional.floatingpoint: 1 hw.optional.mmx: 1 hw.optional.sse: 1 hw.optional.sse2: 1 hw.optional.sse3: 1 hw.optional.supplementalsse3: 1 hw.optional.sse4_1: 1 hw.optional.sse4_2: 1 hw.optional.x86_64: 1 hw.optional.aes: 1 hw.optional.avx1_0: 1 hw.optional.rdrand: 1 hw.optional.f16c: 1 hw.optional.enfstrg: 1 hw.optional.fma: 1 hw.optional.avx2_0: 1 hw.optional.bmi1: 1 hw.optional.bmi2: 1 hw.optional.rtm: 0 hw.optional.hle: 0 hw.optional.adx: 1 hw.optional.mpx: 0 hw.optional.sgx: 0 hw.optional.avx512f: 0 hw.optional.avx512cd: 0 hw.optional.avx512dq: 0 hw.optional.avx512bw: 0 hw.optional.avx512vl: 0 hw.optional.avx512ifma: 0 hw.optional.avx512vbmi: 0 hw.targettype: Mac hw.cputhreadtype: 1 machdep.user_idle_level: 0 machdep.cpu.max_basic: 22 machdep.cpu.max_ext: 2147483656 machdep.cpu.vendor: GenuineIntel machdep.cpu.brand_string: Intel(R) Core(TM) i7-6920HQ CPU @ 2.90GHz machdep.cpu.family: 6 machdep.cpu.model: 94 machdep.cpu.extmodel: 5 machdep.cpu.extfamily: 0 machdep.cpu.stepping: 3 machdep.cpu.feature_bits: 9221960262849657855 machdep.cpu.leaf7_feature_bits: 43806655 0 machdep.cpu.leaf7_feature_bits_edx: 2617255424 machdep.cpu.extfeature_bits: 1241984796928 machdep.cpu.signature: 329443 machdep.cpu.brand: 0 machdep.cpu.features: FPU VME DE PSE TSC MSR PAE MCE CX8 APIC SEP MTRR PGE MCA CMOV PAT PSE36 CLFSH DS ACPI MMX FXSR SSE SSE2 SS HTT TM PBE SSE3 PCLMULQDQ DTES64 MON DSCPL VMX SMX EST TM2 SSSE3 FMA CX16 TPR PDCM SSE4.1 SSE4.2 x2APIC MOVBE POPCNT AES PCID XSAVE OSXSAVE SEGLIM64 TSCTMR AVX1.0 RDRAND F16C machdep.cpu.leaf7_features: RDWRFSGS TSC_THREAD_OFFSET SGX BMI1 HLE AVX2 SMEP BMI2 ERMS INVPCID RTM FPU_CSDS MPX RDSEED ADX SMAP CLFSOPT IPT MDCLEAR TSXFA IBRS STIBP L1DF SSBD machdep.cpu.extfeatures: SYSCALL XD 1GBPAGE EM64T LAHF LZCNT PREFETCHW RDTSCP TSCI machdep.cpu.logical_per_package: 16 machdep.cpu.cores_per_package: 8 machdep.cpu.microcode_version: 220 machdep.cpu.processor_flag: 5 machdep.cpu.mwait.linesize_min: 64 machdep.cpu.mwait.linesize_max: 64 machdep.cpu.mwait.extensions: 3 machdep.cpu.mwait.sub_Cstates: 286531872 machdep.cpu.thermal.sensor: 1 machdep.cpu.thermal.dynamic_acceleration: 1 machdep.cpu.thermal.invariant_APIC_timer: 1 machdep.cpu.thermal.thresholds: 2 machdep.cpu.thermal.ACNT_MCNT: 1 machdep.cpu.thermal.core_power_limits: 1 machdep.cpu.thermal.fine_grain_clock_mod: 1 machdep.cpu.thermal.package_thermal_intr: 1 machdep.cpu.thermal.hardware_feedback: 0 machdep.cpu.thermal.energy_policy: 1 machdep.cpu.xsave.extended_state: 31 832 1088 0 machdep.cpu.xsave.extended_state1: 15 832 256 0 machdep.cpu.arch_perf.version: 4 machdep.cpu.arch_perf.number: 4 machdep.cpu.arch_perf.width: 48 machdep.cpu.arch_perf.events_number: 7 machdep.cpu.arch_perf.events: 0 machdep.cpu.arch_perf.fixed_number: 3 machdep.cpu.arch_perf.fixed_width: 48 machdep.cpu.cache.linesize: 64 machdep.cpu.cache.L2_associativity: 4 machdep.cpu.cache.size: 256 machdep.cpu.tlb.inst.large: 8 machdep.cpu.tlb.data.small: 64 machdep.cpu.tlb.data.small_level1: 64 machdep.cpu.address_bits.physical: 39 machdep.cpu.address_bits.virtual: 48 machdep.cpu.core_count: 4 machdep.cpu.thread_count: 8 machdep.cpu.tsc_ccc.numerator: 242 machdep.cpu.tsc_ccc.denominator: 2 machdep.vectors.timer: 221 machdep.vectors.IPI: 222 machdep.pmap.hashwalks: 167131385 machdep.pmap.hashcnts: 176306559 machdep.pmap.hashmax: 17 machdep.pmap.kernel_text_ps: 2097152 machdep.pmap.kern_pv_reserve: 16000 machdep.memmap.Conventional: 17071337472 machdep.memmap.RuntimeServices: 1810432 machdep.memmap.ACPIReclaim: 393216 machdep.memmap.ACPINVS: 331776 machdep.memmap.PalCode: 0 machdep.memmap.Reserved: 89219072 machdep.memmap.Unusable: 0 machdep.memmap.Other: 0 machdep.tsc.frequency: 2904000000 machdep.tsc.deep_idle_rebase: 1 machdep.tsc.at_boot: 0 machdep.tsc.rebase_abs_time: 34159359195 machdep.tsc.nanotime.tsc_base: 1718652334 machdep.tsc.nanotime.ns_base: 189608135754212 machdep.tsc.nanotime.scale: 1478983228 machdep.tsc.nanotime.shift: 0 machdep.tsc.nanotime.generation: 87 machdep.misc.fast_uexc_support: 1 machdep.misc.panic_restart_timeout: 1266874889 machdep.misc.interrupt_latency_max: 0x0 0x72 0x128796 machdep.misc.timer_queue_trace: machdep.misc.nmis: 0 machdep.xcpm.mode: 1 machdep.xcpm.pcps_mode: 0 machdep.xcpm.hard_plimit_max_100mhz_ratio: 38 machdep.xcpm.hard_plimit_min_100mhz_ratio: 8 machdep.xcpm.soft_plimit_max_100mhz_ratio: 38 machdep.xcpm.soft_plimit_min_100mhz_ratio: 8 machdep.xcpm.tuib_plimit_max_100mhz_ratio: 38 machdep.xcpm.tuib_plimit_min_100mhz_ratio: 8 machdep.xcpm.tuib_enabled: 0 machdep.xcpm.power_source: 0 machdep.xcpm.bootplim: 0 machdep.xcpm.bootpst: 38 machdep.xcpm.tuib_ns: 0 machdep.xcpm.vectors_loaded_count: 1 machdep.xcpm.ratio_change_ratelimit_ns: 3000000 machdep.xcpm.ratio_changes_total: 30163480 machdep.xcpm.maxbusdelay: 4294967295 machdep.xcpm.maxintdelay: 0 machdep.xcpm.mid_applications: 0 machdep.xcpm.mid_relaxations: 0 machdep.xcpm.mid_mode: 1 machdep.xcpm.mid_cst_control_limit: 0 machdep.xcpm.mid_mode_active: 0 machdep.xcpm.mbd_mode: 1 machdep.xcpm.mbd_applications: 7 machdep.xcpm.mbd_relaxations: 7 machdep.xcpm.forced_idle_ratio: 100 machdep.xcpm.forced_idle_period: 30000000 machdep.xcpm.deep_idle_log: 0 machdep.xcpm.qos_txfr: 1 machdep.xcpm.deep_idle_count: 0 machdep.xcpm.deep_idle_last_stats: n/a machdep.xcpm.deep_idle_total_stats: n/a machdep.xcpm.cpu_thermal_level: 28 machdep.xcpm.gpu_thermal_level: 0 machdep.xcpm.io_thermal_level: 0 machdep.xcpm.io_control_engages: 0 machdep.xcpm.io_control_disengages: 0 machdep.xcpm.io_filtered_reads: 2 machdep.xcpm.io_cst_control_enabled: 1 machdep.xcpm.ring_boost_enabled: 1 machdep.xcpm.io_epp_boost_enabled: 1 machdep.xcpm.epp_override: 0 machdep.xcpm.perf_hints: 0 machdep.eager_timer_evaluations: 31934 machdep.eager_timer_evaluation_max: 1208227 machdep.x86_fp_simd_isr_uses: 0 machdep.uncore_sample_state: 0 machdep.uncore_sample_mask: 1 machdep.uncore_sample_ctl: 0 machdep.uncore_pcie_mmio_base: -536870912 audit.session.superuser_set_sflags_mask: 24576 audit.session.superuser_clear_sflags_mask: 24576 audit.session.member_set_sflags_mask: 0 audit.session.member_clear_sflags_mask: 16384 ktrace.state: 0 ktrace.owning_pid: 0 ktrace.background_pid: 0 ktrace.configured_by: kperf.limits.timer_min_period_ns: 20000 kperf.limits.timer_min_bg_period_ns: 1000000 kperf.limits.timer_min_pet_period_ns: 2000000 kperf.limits.timer_min_bg_pet_period_ns: 5000000 kperf.debug_level: 0 security.mac.platform_exec_logging: 0 security.mac.max_slots: 7 security.mac.labelvnodes: 0 security.mac.device_enforce: 1 security.mac.pipe_enforce: 1 security.mac.posixsem_enforce: 1 security.mac.posixshm_enforce: 1 security.mac.proc_enforce: 1 security.mac.socket_enforce: 1 security.mac.system_enforce: 1 security.mac.sysvmsg_enforce: 1 security.mac.sysvsem_enforce: 1 security.mac.sysvshm_enforce: 1 security.mac.vm_enforce: 1 security.mac.vnode_enforce: 1 security.mac.amfi.force_policy: 0 security.mac.amfi.verbose_logging: 0 security.mac.amfi.hsp_enable: 0 security.mac.sandbox.audio_active: 0 security.mac.sandbox.sentinel: .sb-adb6aa60 security.mac.qtn.sandbox_enforce: 1 security.mac.qtn.user_approved_exec: 1 security.mac.asp.cache_entry_count: 1340 security.mac.asp.cache_allocation_count: 1394 security.mac.asp.cache_release_count: 54 security.mac.asp.exec_hook_time: 1170773 security.mac.asp.exec_hook_count: 437184 security.mac.asp.library_hook_time: 1657737 security.mac.asp.library_hook_count: 2162470 ============================================================================================= TESTING: checkCompilerMacros from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:164) Save the list of CPP macros defined by the C and C++ compiler, does not work for all compilers Executing: mpicc -c -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags/conftest.c -E -dM stdout: #define OBJC_NEW_PROPERTIES 1 #define _LP64 1 #define __APPLE_CC__ 6000 #define __APPLE__ 1 #define __ATOMIC_ACQUIRE 2 #define __ATOMIC_ACQ_REL 4 #define __ATOMIC_CONSUME 1 #define __ATOMIC_RELAXED 0 #define __ATOMIC_RELEASE 3 #define __ATOMIC_SEQ_CST 5 #define __BIGGEST_ALIGNMENT__ 16 #define __BLOCKS__ 1 #define __BYTE_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __CHAR16_TYPE__ unsigned short #define __CHAR32_TYPE__ unsigned int #define __CHAR_BIT__ 8 #define __CLANG_ATOMIC_BOOL_LOCK_FREE 2 #define __CLANG_ATOMIC_CHAR16_T_LOCK_FREE 2 #define __CLANG_ATOMIC_CHAR32_T_LOCK_FREE 2 #define __CLANG_ATOMIC_CHAR_LOCK_FREE 2 #define __CLANG_ATOMIC_INT_LOCK_FREE 2 #define __CLANG_ATOMIC_LLONG_LOCK_FREE 2 #define __CLANG_ATOMIC_LONG_LOCK_FREE 2 #define __CLANG_ATOMIC_POINTER_LOCK_FREE 2 #define __CLANG_ATOMIC_SHORT_LOCK_FREE 2 #define __CLANG_ATOMIC_WCHAR_T_LOCK_FREE 2 #define __CONSTANT_CFSTRINGS__ 1 #define __DBL_DECIMAL_DIG__ 17 #define __DBL_DENORM_MIN__ 4.9406564584124654e-324 #define __DBL_DIG__ 15 #define __DBL_EPSILON__ 2.2204460492503131e-16 #define __DBL_HAS_DENORM__ 1 #define __DBL_HAS_INFINITY__ 1 #define __DBL_HAS_QUIET_NAN__ 1 #define __DBL_MANT_DIG__ 53 #define __DBL_MAX_10_EXP__ 308 #define __DBL_MAX_EXP__ 1024 #define __DBL_MAX__ 1.7976931348623157e+308 #define __DBL_MIN_10_EXP__ (-307) #define __DBL_MIN_EXP__ (-1021) #define __DBL_MIN__ 2.2250738585072014e-308 #define __DECIMAL_DIG__ __LDBL_DECIMAL_DIG__ #define __DYNAMIC__ 1 #define __ENVIRONMENT_MAC_OS_X_VERSION_MIN_REQUIRED__ 1090 #define __FINITE_MATH_ONLY__ 0 #define __FLT_DECIMAL_DIG__ 9 #define __FLT_DENORM_MIN__ 1.40129846e-45F #define __FLT_DIG__ 6 #define __FLT_EPSILON__ 1.19209290e-7F #define __FLT_EVAL_METHOD__ 0 #define __FLT_HAS_DENORM__ 1 #define __FLT_HAS_INFINITY__ 1 #define __FLT_HAS_QUIET_NAN__ 1 #define __FLT_MANT_DIG__ 24 #define __FLT_MAX_10_EXP__ 38 #define __FLT_MAX_EXP__ 128 #define __FLT_MAX__ 3.40282347e+38F #define __FLT_MIN_10_EXP__ (-37) #define __FLT_MIN_EXP__ (-125) #define __FLT_MIN__ 1.17549435e-38F #define __FLT_RADIX__ 2 #define __FXSR__ 1 #define __GCC_ASM_FLAG_OUTPUTS__ 1 #define __GCC_ATOMIC_BOOL_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR16_T_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR32_T_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR_LOCK_FREE 2 #define __GCC_ATOMIC_INT_LOCK_FREE 2 #define __GCC_ATOMIC_LLONG_LOCK_FREE 2 #define __GCC_ATOMIC_LONG_LOCK_FREE 2 #define __GCC_ATOMIC_POINTER_LOCK_FREE 2 #define __GCC_ATOMIC_SHORT_LOCK_FREE 2 #define __GCC_ATOMIC_TEST_AND_SET_TRUEVAL 1 #define __GCC_ATOMIC_WCHAR_T_LOCK_FREE 2 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_1 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_16 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_2 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_4 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_8 1 #define __GNUC_MINOR__ 2 #define __GNUC_PATCHLEVEL__ 1 #define __GNUC_STDC_INLINE__ 1 #define __GNUC__ 4 #define __GXX_ABI_VERSION 1002 #define __INT16_C_SUFFIX__ #define __INT16_FMTd__ "hd" #define __INT16_FMTi__ "hi" #define __INT16_MAX__ 32767 #define __INT16_TYPE__ short #define __INT32_C_SUFFIX__ #define __INT32_FMTd__ "d" #define __INT32_FMTi__ "i" #define __INT32_MAX__ 2147483647 #define __INT32_TYPE__ int #define __INT64_C_SUFFIX__ LL #define __INT64_FMTd__ "lld" #define __INT64_FMTi__ "lli" #define __INT64_MAX__ 9223372036854775807LL #define __INT64_TYPE__ long long int #define __INT8_C_SUFFIX__ #define __INT8_FMTd__ "hhd" #define __INT8_FMTi__ "hhi" #define __INT8_MAX__ 127 #define __INT8_TYPE__ signed char #define __INTMAX_C_SUFFIX__ L #define __INTMAX_FMTd__ "ld" #define __INTMAX_FMTi__ "li" #define __INTMAX_MAX__ 9223372036854775807L #define __INTMAX_TYPE__ long int #define __INTMAX_WIDTH__ 64 #define __INTPTR_FMTd__ "ld" #define __INTPTR_FMTi__ "li" #define __INTPTR_MAX__ 9223372036854775807L #define __INTPTR_TYPE__ long int #define __INTPTR_WIDTH__ 64 #define __INT_FAST16_FMTd__ "hd" #define __INT_FAST16_FMTi__ "hi" #define __INT_FAST16_MAX__ 32767 #define __INT_FAST16_TYPE__ short #define __INT_FAST32_FMTd__ "d" #define __INT_FAST32_FMTi__ "i" #define __INT_FAST32_MAX__ 2147483647 #define __INT_FAST32_TYPE__ int #define __INT_FAST64_FMTd__ "lld" #define __INT_FAST64_FMTi__ "lli" #define __INT_FAST64_MAX__ 9223372036854775807LL #define __INT_FAST64_TYPE__ long long int #define __INT_FAST8_FMTd__ "hhd" #define __INT_FAST8_FMTi__ "hhi" #define __INT_FAST8_MAX__ 127 #define __INT_FAST8_TYPE__ signed char #define __INT_LEAST16_FMTd__ "hd" #define __INT_LEAST16_FMTi__ "hi" #define __INT_LEAST16_MAX__ 32767 #define __INT_LEAST16_TYPE__ short #define __INT_LEAST32_FMTd__ "d" #define __INT_LEAST32_FMTi__ "i" #define __INT_LEAST32_MAX__ 2147483647 #define __INT_LEAST32_TYPE__ int #define __INT_LEAST64_FMTd__ "lld" #define __INT_LEAST64_FMTi__ "lli" #define __INT_LEAST64_MAX__ 9223372036854775807LL #define __INT_LEAST64_TYPE__ long long int #define __INT_LEAST8_FMTd__ "hhd" #define __INT_LEAST8_FMTi__ "hhi" #define __INT_LEAST8_MAX__ 127 #define __INT_LEAST8_TYPE__ signed char #define __INT_MAX__ 2147483647 #define __LDBL_DECIMAL_DIG__ 21 #define __LDBL_DENORM_MIN__ 3.64519953188247460253e-4951L #define __LDBL_DIG__ 18 #define __LDBL_EPSILON__ 1.08420217248550443401e-19L #define __LDBL_HAS_DENORM__ 1 #define __LDBL_HAS_INFINITY__ 1 #define __LDBL_HAS_QUIET_NAN__ 1 #define __LDBL_MANT_DIG__ 64 #define __LDBL_MAX_10_EXP__ 4932 #define __LDBL_MAX_EXP__ 16384 #define __LDBL_MAX__ 1.18973149535723176502e+4932L #define __LDBL_MIN_10_EXP__ (-4931) #define __LDBL_MIN_EXP__ (-16381) #define __LDBL_MIN__ 3.36210314311209350626e-4932L #define __LITTLE_ENDIAN__ 1 #define __LONG_LONG_MAX__ 9223372036854775807LL #define __LONG_MAX__ 9223372036854775807L #define __LP64__ 1 #define __MACH__ 1 #define __MMX__ 1 #define __NO_MATH_INLINES 1 #define __OBJC_BOOL_IS_BOOL 0 #define __OPENCL_MEMORY_SCOPE_ALL_SVM_DEVICES 3 #define __OPENCL_MEMORY_SCOPE_DEVICE 2 #define __OPENCL_MEMORY_SCOPE_SUB_GROUP 4 #define __OPENCL_MEMORY_SCOPE_WORK_GROUP 1 #define __OPENCL_MEMORY_SCOPE_WORK_ITEM 0 #define __OPTIMIZE__ 1 #define __ORDER_BIG_ENDIAN__ 4321 #define __ORDER_LITTLE_ENDIAN__ 1234 #define __ORDER_PDP_ENDIAN__ 3412 #define __PIC__ 2 #define __POINTER_WIDTH__ 64 #define __PRAGMA_REDEFINE_EXTNAME 1 #define __PTRDIFF_FMTd__ "ld" #define __PTRDIFF_FMTi__ "li" #define __PTRDIFF_MAX__ 9223372036854775807L #define __PTRDIFF_TYPE__ long int #define __PTRDIFF_WIDTH__ 64 #define __REGISTER_PREFIX__ #define __SCHAR_MAX__ 127 #define __SEG_FS 1 #define __SEG_GS 1 #define __SHRT_MAX__ 32767 #define __SIG_ATOMIC_MAX__ 2147483647 #define __SIG_ATOMIC_WIDTH__ 32 #define __SIZEOF_DOUBLE__ 8 #define __SIZEOF_FLOAT__ 4 #define __SIZEOF_INT128__ 16 #define __SIZEOF_INT__ 4 #define __SIZEOF_LONG_DOUBLE__ 16 #define __SIZEOF_LONG_LONG__ 8 #define __SIZEOF_LONG__ 8 #define __SIZEOF_POINTER__ 8 #define __SIZEOF_PTRDIFF_T__ 8 #define __SIZEOF_SHORT__ 2 #define __SIZEOF_SIZE_T__ 8 #define __SIZEOF_WCHAR_T__ 4 #define __SIZEOF_WINT_T__ 4 #define __SIZE_FMTX__ "lX" #define __SIZE_FMTo__ "lo" #define __SIZE_FMTu__ "lu" #define __SIZE_FMTx__ "lx" #define __SIZE_MAX__ 18446744073709551615UL #define __SIZE_TYPE__ long unsigned int #define __SIZE_WIDTH__ 64 #define __SSE2_MATH__ 1 #define __SSE2__ 1 #define __SSE3__ 1 #define __SSE_MATH__ 1 #define __SSE__ 1 #define __SSP__ 1 #define __SSSE3__ 1 #define __STDC_HOSTED__ 1 #define __STDC_NO_THREADS__ 1 #define __STDC_UTF_16__ 1 #define __STDC_UTF_32__ 1 #define __STDC_VERSION__ 201112L #define __STDC__ 1 #define __UINT16_C_SUFFIX__ #define __UINT16_FMTX__ "hX" #define __UINT16_FMTo__ "ho" #define __UINT16_FMTu__ "hu" #define __UINT16_FMTx__ "hx" #define __UINT16_MAX__ 65535 #define __UINT16_TYPE__ unsigned short #define __UINT32_C_SUFFIX__ U #define __UINT32_FMTX__ "X" #define __UINT32_FMTo__ "o" #define __UINT32_FMTu__ "u" #define __UINT32_FMTx__ "x" #define __UINT32_MAX__ 4294967295U #define __UINT32_TYPE__ unsigned int #define __UINT64_C_SUFFIX__ ULL #define __UINT64_FMTX__ "llX" #define __UINT64_FMTo__ "llo" #define __UINT64_FMTu__ "llu" #define __UINT64_FMTx__ "llx" #define __UINT64_MAX__ 18446744073709551615ULL #define __UINT64_TYPE__ long long unsigned int #define __UINT8_C_SUFFIX__ #define __UINT8_FMTX__ "hhX" #define __UINT8_FMTo__ "hho" #define __UINT8_FMTu__ "hhu" #define __UINT8_FMTx__ "hhx" #define __UINT8_MAX__ 255 #define __UINT8_TYPE__ unsigned char #define __UINTMAX_C_SUFFIX__ UL #define __UINTMAX_FMTX__ "lX" #define __UINTMAX_FMTo__ "lo" #define __UINTMAX_FMTu__ "lu" #define __UINTMAX_FMTx__ "lx" #define __UINTMAX_MAX__ 18446744073709551615UL #define __UINTMAX_TYPE__ long unsigned int #define __UINTMAX_WIDTH__ 64 #define __UINTPTR_FMTX__ "lX" #define __UINTPTR_FMTo__ "lo" #define __UINTPTR_FMTu__ "lu" #define __UINTPTR_FMTx__ "lx" #define __UINTPTR_MAX__ 18446744073709551615UL #define __UINTPTR_TYPE__ long unsigned int #define __UINTPTR_WIDTH__ 64 #define __UINT_FAST16_FMTX__ "hX" #define __UINT_FAST16_FMTo__ "ho" #define __UINT_FAST16_FMTu__ "hu" #define __UINT_FAST16_FMTx__ "hx" #define __UINT_FAST16_MAX__ 65535 #define __UINT_FAST16_TYPE__ unsigned short #define __UINT_FAST32_FMTX__ "X" #define __UINT_FAST32_FMTo__ "o" #define __UINT_FAST32_FMTu__ "u" #define __UINT_FAST32_FMTx__ "x" #define __UINT_FAST32_MAX__ 4294967295U #define __UINT_FAST32_TYPE__ unsigned int #define __UINT_FAST64_FMTX__ "llX" #define __UINT_FAST64_FMTo__ "llo" #define __UINT_FAST64_FMTu__ "llu" #define __UINT_FAST64_FMTx__ "llx" #define __UINT_FAST64_MAX__ 18446744073709551615ULL #define __UINT_FAST64_TYPE__ long long unsigned int #define __UINT_FAST8_FMTX__ "hhX" #define __UINT_FAST8_FMTo__ "hho" #define __UINT_FAST8_FMTu__ "hhu" #define __UINT_FAST8_FMTx__ "hhx" #define __UINT_FAST8_MAX__ 255 #define __UINT_FAST8_TYPE__ unsigned char #define __UINT_LEAST16_FMTX__ "hX" #define __UINT_LEAST16_FMTo__ "ho" #define __UINT_LEAST16_FMTu__ "hu" #define __UINT_LEAST16_FMTx__ "hx" #define __UINT_LEAST16_MAX__ 65535 #define __UINT_LEAST16_TYPE__ unsigned short #define __UINT_LEAST32_FMTX__ "X" #define __UINT_LEAST32_FMTo__ "o" #define __UINT_LEAST32_FMTu__ "u" #define __UINT_LEAST32_FMTx__ "x" #define __UINT_LEAST32_MAX__ 4294967295U #define __UINT_LEAST32_TYPE__ unsigned int #define __UINT_LEAST64_FMTX__ "llX" #define __UINT_LEAST64_FMTo__ "llo" #define __UINT_LEAST64_FMTu__ "llu" #define __UINT_LEAST64_FMTx__ "llx" #define __UINT_LEAST64_MAX__ 18446744073709551615ULL #define __UINT_LEAST64_TYPE__ long long unsigned int #define __UINT_LEAST8_FMTX__ "hhX" #define __UINT_LEAST8_FMTo__ "hho" #define __UINT_LEAST8_FMTu__ "hhu" #define __UINT_LEAST8_FMTx__ "hhx" #define __UINT_LEAST8_MAX__ 255 #define __UINT_LEAST8_TYPE__ unsigned char #define __USER_LABEL_PREFIX__ _ #define __VERSION__ "Clang 9.0.1 " #define __WCHAR_MAX__ 2147483647 #define __WCHAR_TYPE__ int #define __WCHAR_WIDTH__ 32 #define __WINT_MAX__ 2147483647 #define __WINT_TYPE__ int #define __WINT_WIDTH__ 32 #define __amd64 1 #define __amd64__ 1 #define __block __attribute__((__blocks__(byref))) #define __clang__ 1 #define __clang_major__ 9 #define __clang_minor__ 0 #define __clang_patchlevel__ 1 #define __clang_version__ "9.0.1 " #define __code_model_small_ 1 #define __core2 1 #define __core2__ 1 #define __llvm__ 1 #define __nonnull _Nonnull #define __null_unspecified _Null_unspecified #define __nullable _Nullable #define __pic__ 2 #define __seg_fs __attribute__((address_space(257))) #define __seg_gs __attribute__((address_space(256))) #define __strong #define __tune_core2__ 1 #define __unsafe_unretained #define __weak __attribute__((objc_gc(weak))) #define __x86_64 1 #define __x86_64__ 1 Executing: mpicxx -c -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O3 -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags/conftest.cc -E -dM stdout: #define OBJC_NEW_PROPERTIES 1 #define _LP64 1 #define __APPLE_CC__ 6000 #define __APPLE__ 1 #define __ATOMIC_ACQUIRE 2 #define __ATOMIC_ACQ_REL 4 #define __ATOMIC_CONSUME 1 #define __ATOMIC_RELAXED 0 #define __ATOMIC_RELEASE 3 #define __ATOMIC_SEQ_CST 5 #define __BIGGEST_ALIGNMENT__ 16 #define __BLOCKS__ 1 #define __BYTE_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __CHAR16_TYPE__ unsigned short #define __CHAR32_TYPE__ unsigned int #define __CHAR_BIT__ 8 #define __CLANG_ATOMIC_BOOL_LOCK_FREE 2 #define __CLANG_ATOMIC_CHAR16_T_LOCK_FREE 2 #define __CLANG_ATOMIC_CHAR32_T_LOCK_FREE 2 #define __CLANG_ATOMIC_CHAR_LOCK_FREE 2 #define __CLANG_ATOMIC_INT_LOCK_FREE 2 #define __CLANG_ATOMIC_LLONG_LOCK_FREE 2 #define __CLANG_ATOMIC_LONG_LOCK_FREE 2 #define __CLANG_ATOMIC_POINTER_LOCK_FREE 2 #define __CLANG_ATOMIC_SHORT_LOCK_FREE 2 #define __CLANG_ATOMIC_WCHAR_T_LOCK_FREE 2 #define __CONSTANT_CFSTRINGS__ 1 #define __DBL_DECIMAL_DIG__ 17 #define __DBL_DENORM_MIN__ 4.9406564584124654e-324 #define __DBL_DIG__ 15 #define __DBL_EPSILON__ 2.2204460492503131e-16 #define __DBL_HAS_DENORM__ 1 #define __DBL_HAS_INFINITY__ 1 #define __DBL_HAS_QUIET_NAN__ 1 #define __DBL_MANT_DIG__ 53 #define __DBL_MAX_10_EXP__ 308 #define __DBL_MAX_EXP__ 1024 #define __DBL_MAX__ 1.7976931348623157e+308 #define __DBL_MIN_10_EXP__ (-307) #define __DBL_MIN_EXP__ (-1021) #define __DBL_MIN__ 2.2250738585072014e-308 #define __DECIMAL_DIG__ __LDBL_DECIMAL_DIG__ #define __DEPRECATED 1 #define __DYNAMIC__ 1 #define __ENVIRONMENT_MAC_OS_X_VERSION_MIN_REQUIRED__ 1090 #define __EXCEPTIONS 1 #define __FINITE_MATH_ONLY__ 0 #define __FLT_DECIMAL_DIG__ 9 #define __FLT_DENORM_MIN__ 1.40129846e-45F #define __FLT_DIG__ 6 #define __FLT_EPSILON__ 1.19209290e-7F #define __FLT_EVAL_METHOD__ 0 #define __FLT_HAS_DENORM__ 1 #define __FLT_HAS_INFINITY__ 1 #define __FLT_HAS_QUIET_NAN__ 1 #define __FLT_MANT_DIG__ 24 #define __FLT_MAX_10_EXP__ 38 #define __FLT_MAX_EXP__ 128 #define __FLT_MAX__ 3.40282347e+38F #define __FLT_MIN_10_EXP__ (-37) #define __FLT_MIN_EXP__ (-125) #define __FLT_MIN__ 1.17549435e-38F #define __FLT_RADIX__ 2 #define __FXSR__ 1 #define __GCC_ASM_FLAG_OUTPUTS__ 1 #define __GCC_ATOMIC_BOOL_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR16_T_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR32_T_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR_LOCK_FREE 2 #define __GCC_ATOMIC_INT_LOCK_FREE 2 #define __GCC_ATOMIC_LLONG_LOCK_FREE 2 #define __GCC_ATOMIC_LONG_LOCK_FREE 2 #define __GCC_ATOMIC_POINTER_LOCK_FREE 2 #define __GCC_ATOMIC_SHORT_LOCK_FREE 2 #define __GCC_ATOMIC_TEST_AND_SET_TRUEVAL 1 #define __GCC_ATOMIC_WCHAR_T_LOCK_FREE 2 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_1 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_16 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_2 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_4 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_8 1 #define __GLIBCXX_BITSIZE_INT_N_0 128 #define __GLIBCXX_TYPE_INT_N_0 __int128 #define __GNUC_GNU_INLINE__ 1 #define __GNUC_MINOR__ 2 #define __GNUC_PATCHLEVEL__ 1 #define __GNUC__ 4 #define __GNUG__ 4 #define __GXX_ABI_VERSION 1002 #define __GXX_EXPERIMENTAL_CXX0X__ 1 #define __GXX_RTTI 1 #define __GXX_WEAK__ 1 #define __INT16_C_SUFFIX__ #define __INT16_FMTd__ "hd" #define __INT16_FMTi__ "hi" #define __INT16_MAX__ 32767 #define __INT16_TYPE__ short #define __INT32_C_SUFFIX__ #define __INT32_FMTd__ "d" #define __INT32_FMTi__ "i" #define __INT32_MAX__ 2147483647 #define __INT32_TYPE__ int #define __INT64_C_SUFFIX__ LL #define __INT64_FMTd__ "lld" #define __INT64_FMTi__ "lli" #define __INT64_MAX__ 9223372036854775807LL #define __INT64_TYPE__ long long int #define __INT8_C_SUFFIX__ #define __INT8_FMTd__ "hhd" #define __INT8_FMTi__ "hhi" #define __INT8_MAX__ 127 #define __INT8_TYPE__ signed char #define __INTMAX_C_SUFFIX__ L #define __INTMAX_FMTd__ "ld" #define __INTMAX_FMTi__ "li" #define __INTMAX_MAX__ 9223372036854775807L #define __INTMAX_TYPE__ long int #define __INTMAX_WIDTH__ 64 #define __INTPTR_FMTd__ "ld" #define __INTPTR_FMTi__ "li" #define __INTPTR_MAX__ 9223372036854775807L #define __INTPTR_TYPE__ long int #define __INTPTR_WIDTH__ 64 #define __INT_FAST16_FMTd__ "hd" #define __INT_FAST16_FMTi__ "hi" #define __INT_FAST16_MAX__ 32767 #define __INT_FAST16_TYPE__ short #define __INT_FAST32_FMTd__ "d" #define __INT_FAST32_FMTi__ "i" #define __INT_FAST32_MAX__ 2147483647 #define __INT_FAST32_TYPE__ int #define __INT_FAST64_FMTd__ "lld" #define __INT_FAST64_FMTi__ "lli" #define __INT_FAST64_MAX__ 9223372036854775807LL #define __INT_FAST64_TYPE__ long long int #define __INT_FAST8_FMTd__ "hhd" #define __INT_FAST8_FMTi__ "hhi" #define __INT_FAST8_MAX__ 127 #define __INT_FAST8_TYPE__ signed char #define __INT_LEAST16_FMTd__ "hd" #define __INT_LEAST16_FMTi__ "hi" #define __INT_LEAST16_MAX__ 32767 #define __INT_LEAST16_TYPE__ short #define __INT_LEAST32_FMTd__ "d" #define __INT_LEAST32_FMTi__ "i" #define __INT_LEAST32_MAX__ 2147483647 #define __INT_LEAST32_TYPE__ int #define __INT_LEAST64_FMTd__ "lld" #define __INT_LEAST64_FMTi__ "lli" #define __INT_LEAST64_MAX__ 9223372036854775807LL #define __INT_LEAST64_TYPE__ long long int #define __INT_LEAST8_FMTd__ "hhd" #define __INT_LEAST8_FMTi__ "hhi" #define __INT_LEAST8_MAX__ 127 #define __INT_LEAST8_TYPE__ signed char #define __INT_MAX__ 2147483647 #define __LDBL_DECIMAL_DIG__ 21 #define __LDBL_DENORM_MIN__ 3.64519953188247460253e-4951L #define __LDBL_DIG__ 18 #define __LDBL_EPSILON__ 1.08420217248550443401e-19L #define __LDBL_HAS_DENORM__ 1 #define __LDBL_HAS_INFINITY__ 1 #define __LDBL_HAS_QUIET_NAN__ 1 #define __LDBL_MANT_DIG__ 64 #define __LDBL_MAX_10_EXP__ 4932 #define __LDBL_MAX_EXP__ 16384 #define __LDBL_MAX__ 1.18973149535723176502e+4932L #define __LDBL_MIN_10_EXP__ (-4931) #define __LDBL_MIN_EXP__ (-16381) #define __LDBL_MIN__ 3.36210314311209350626e-4932L #define __LITTLE_ENDIAN__ 1 #define __LONG_LONG_MAX__ 9223372036854775807LL #define __LONG_MAX__ 9223372036854775807L #define __LP64__ 1 #define __MACH__ 1 #define __MMX__ 1 #define __NO_MATH_INLINES 1 #define __OBJC_BOOL_IS_BOOL 0 #define __OPENCL_MEMORY_SCOPE_ALL_SVM_DEVICES 3 #define __OPENCL_MEMORY_SCOPE_DEVICE 2 #define __OPENCL_MEMORY_SCOPE_SUB_GROUP 4 #define __OPENCL_MEMORY_SCOPE_WORK_GROUP 1 #define __OPENCL_MEMORY_SCOPE_WORK_ITEM 0 #define __OPTIMIZE__ 1 #define __ORDER_BIG_ENDIAN__ 4321 #define __ORDER_LITTLE_ENDIAN__ 1234 #define __ORDER_PDP_ENDIAN__ 3412 #define __PIC__ 2 #define __POINTER_WIDTH__ 64 #define __PRAGMA_REDEFINE_EXTNAME 1 #define __PTRDIFF_FMTd__ "ld" #define __PTRDIFF_FMTi__ "li" #define __PTRDIFF_MAX__ 9223372036854775807L #define __PTRDIFF_TYPE__ long int #define __PTRDIFF_WIDTH__ 64 #define __REGISTER_PREFIX__ #define __SCHAR_MAX__ 127 #define __SEG_FS 1 #define __SEG_GS 1 #define __SHRT_MAX__ 32767 #define __SIG_ATOMIC_MAX__ 2147483647 #define __SIG_ATOMIC_WIDTH__ 32 #define __SIZEOF_DOUBLE__ 8 #define __SIZEOF_FLOAT__ 4 #define __SIZEOF_INT128__ 16 #define __SIZEOF_INT__ 4 #define __SIZEOF_LONG_DOUBLE__ 16 #define __SIZEOF_LONG_LONG__ 8 #define __SIZEOF_LONG__ 8 #define __SIZEOF_POINTER__ 8 #define __SIZEOF_PTRDIFF_T__ 8 #define __SIZEOF_SHORT__ 2 #define __SIZEOF_SIZE_T__ 8 #define __SIZEOF_WCHAR_T__ 4 #define __SIZEOF_WINT_T__ 4 #define __SIZE_FMTX__ "lX" #define __SIZE_FMTo__ "lo" #define __SIZE_FMTu__ "lu" #define __SIZE_FMTx__ "lx" #define __SIZE_MAX__ 18446744073709551615UL #define __SIZE_TYPE__ long unsigned int #define __SIZE_WIDTH__ 64 #define __SSE2_MATH__ 1 #define __SSE2__ 1 #define __SSE3__ 1 #define __SSE_MATH__ 1 #define __SSE__ 1 #define __SSP__ 1 #define __SSSE3__ 1 #define __STDCPP_DEFAULT_NEW_ALIGNMENT__ 16UL #define __STDC_HOSTED__ 1 #define __STDC_NO_THREADS__ 1 #define __STDC_UTF_16__ 1 #define __STDC_UTF_32__ 1 #define __STDC__ 1 #define __UINT16_C_SUFFIX__ #define __UINT16_FMTX__ "hX" #define __UINT16_FMTo__ "ho" #define __UINT16_FMTu__ "hu" #define __UINT16_FMTx__ "hx" #define __UINT16_MAX__ 65535 #define __UINT16_TYPE__ unsigned short #define __UINT32_C_SUFFIX__ U #define __UINT32_FMTX__ "X" #define __UINT32_FMTo__ "o" #define __UINT32_FMTu__ "u" #define __UINT32_FMTx__ "x" #define __UINT32_MAX__ 4294967295U #define __UINT32_TYPE__ unsigned int #define __UINT64_C_SUFFIX__ ULL #define __UINT64_FMTX__ "llX" #define __UINT64_FMTo__ "llo" #define __UINT64_FMTu__ "llu" #define __UINT64_FMTx__ "llx" #define __UINT64_MAX__ 18446744073709551615ULL #define __UINT64_TYPE__ long long unsigned int #define __UINT8_C_SUFFIX__ #define __UINT8_FMTX__ "hhX" #define __UINT8_FMTo__ "hho" #define __UINT8_FMTu__ "hhu" #define __UINT8_FMTx__ "hhx" #define __UINT8_MAX__ 255 #define __UINT8_TYPE__ unsigned char #define __UINTMAX_C_SUFFIX__ UL #define __UINTMAX_FMTX__ "lX" #define __UINTMAX_FMTo__ "lo" #define __UINTMAX_FMTu__ "lu" #define __UINTMAX_FMTx__ "lx" #define __UINTMAX_MAX__ 18446744073709551615UL #define __UINTMAX_TYPE__ long unsigned int #define __UINTMAX_WIDTH__ 64 #define __UINTPTR_FMTX__ "lX" #define __UINTPTR_FMTo__ "lo" #define __UINTPTR_FMTu__ "lu" #define __UINTPTR_FMTx__ "lx" #define __UINTPTR_MAX__ 18446744073709551615UL #define __UINTPTR_TYPE__ long unsigned int #define __UINTPTR_WIDTH__ 64 #define __UINT_FAST16_FMTX__ "hX" #define __UINT_FAST16_FMTo__ "ho" #define __UINT_FAST16_FMTu__ "hu" #define __UINT_FAST16_FMTx__ "hx" #define __UINT_FAST16_MAX__ 65535 #define __UINT_FAST16_TYPE__ unsigned short #define __UINT_FAST32_FMTX__ "X" #define __UINT_FAST32_FMTo__ "o" #define __UINT_FAST32_FMTu__ "u" #define __UINT_FAST32_FMTx__ "x" #define __UINT_FAST32_MAX__ 4294967295U #define __UINT_FAST32_TYPE__ unsigned int #define __UINT_FAST64_FMTX__ "llX" #define __UINT_FAST64_FMTo__ "llo" #define __UINT_FAST64_FMTu__ "llu" #define __UINT_FAST64_FMTx__ "llx" #define __UINT_FAST64_MAX__ 18446744073709551615ULL #define __UINT_FAST64_TYPE__ long long unsigned int #define __UINT_FAST8_FMTX__ "hhX" #define __UINT_FAST8_FMTo__ "hho" #define __UINT_FAST8_FMTu__ "hhu" #define __UINT_FAST8_FMTx__ "hhx" #define __UINT_FAST8_MAX__ 255 #define __UINT_FAST8_TYPE__ unsigned char #define __UINT_LEAST16_FMTX__ "hX" #define __UINT_LEAST16_FMTo__ "ho" #define __UINT_LEAST16_FMTu__ "hu" #define __UINT_LEAST16_FMTx__ "hx" #define __UINT_LEAST16_MAX__ 65535 #define __UINT_LEAST16_TYPE__ unsigned short #define __UINT_LEAST32_FMTX__ "X" #define __UINT_LEAST32_FMTo__ "o" #define __UINT_LEAST32_FMTu__ "u" #define __UINT_LEAST32_FMTx__ "x" #define __UINT_LEAST32_MAX__ 4294967295U #define __UINT_LEAST32_TYPE__ unsigned int #define __UINT_LEAST64_FMTX__ "llX" #define __UINT_LEAST64_FMTo__ "llo" #define __UINT_LEAST64_FMTu__ "llu" #define __UINT_LEAST64_FMTx__ "llx" #define __UINT_LEAST64_MAX__ 18446744073709551615ULL #define __UINT_LEAST64_TYPE__ long long unsigned int #define __UINT_LEAST8_FMTX__ "hhX" #define __UINT_LEAST8_FMTo__ "hho" #define __UINT_LEAST8_FMTu__ "hhu" #define __UINT_LEAST8_FMTx__ "hhx" #define __UINT_LEAST8_MAX__ 255 #define __UINT_LEAST8_TYPE__ unsigned char #define __USER_LABEL_PREFIX__ _ #define __VERSION__ "Clang 9.0.1 " #define __WCHAR_MAX__ 2147483647 #define __WCHAR_TYPE__ int #define __WCHAR_WIDTH__ 32 #define __WINT_MAX__ 2147483647 #define __WINT_TYPE__ int #define __WINT_WIDTH__ 32 #define __amd64 1 #define __amd64__ 1 #define __block __attribute__((__blocks__(byref))) #define __clang__ 1 #define __clang_major__ 9 #define __clang_minor__ 0 #define __clang_patchlevel__ 1 #define __clang_version__ "9.0.1 " #define __code_model_small_ 1 #define __core2 1 #define __core2__ 1 #define __cplusplus 201402L #define __cpp_aggregate_nsdmi 201304L #define __cpp_alias_templates 200704L #define __cpp_attributes 200809L #define __cpp_binary_literals 201304L #define __cpp_constexpr 201304L #define __cpp_decltype 200707L #define __cpp_decltype_auto 201304L #define __cpp_delegating_constructors 200604L #define __cpp_digit_separators 201309L #define __cpp_exceptions 199711L #define __cpp_generic_lambdas 201304L #define __cpp_impl_destroying_delete 201806L #define __cpp_inheriting_constructors 201511L #define __cpp_init_captures 201304L #define __cpp_initializer_lists 200806L #define __cpp_lambdas 200907L #define __cpp_nsdmi 200809L #define __cpp_range_based_for 200907 #define __cpp_raw_strings 200710L #define __cpp_ref_qualifiers 200710L #define __cpp_return_type_deduction 201304L #define __cpp_rtti 199711L #define __cpp_rvalue_references 200610L #define __cpp_static_assert 200410 #define __cpp_threadsafe_static_init 200806L #define __cpp_unicode_characters 200704L #define __cpp_unicode_literals 200710L #define __cpp_user_defined_literals 200809L #define __cpp_variable_templates 201304L #define __cpp_variadic_templates 200704L #define __llvm__ 1 #define __nonnull _Nonnull #define __null_unspecified _Null_unspecified #define __nullable _Nullable #define __pic__ 2 #define __private_extern__ extern #define __seg_fs __attribute__((address_space(257))) #define __seg_gs __attribute__((address_space(256))) #define __strong #define __tune_core2__ 1 #define __unsafe_unretained #define __weak __attribute__((objc_gc(weak))) #define __x86_64 1 #define __x86_64__ 1 child config.compilerFlags 3.240818 Executing: mpicc --help | head -n 20 stdout: OVERVIEW: clang LLVM compiler USAGE: clang-9 [options] file... OPTIONS: -### Print (but do not run) the commands to run for this compilation --analyzer-output Static analyzer report output format (html|plist|plist-multi-file|plist-html|text). --analyze Run the static analyzer -arcmt-migrate-emit-errors Emit ARC errors even if the migrator can fix them -arcmt-migrate-report-output Output path for the plist report -B Add to search path for binaries and object files used implicitly -CC Include comments from within macros in preprocessed output -cfguard Emit tables required for Windows Control Flow Guard. -cl-denorms-are-zero OpenCL only. Allow denormals to be flushed to zero. -cl-fast-relaxed-math OpenCL only. Sets -cl-finite-math-only and -cl-unsafe-math-optimizations, and defines __FAST_RELAXED_MATH__. -cl-finite-math-only OpenCL only. Allow floating-point optimizations that assume arguments and results are not NaNs or +-Inf. -cl-fp32-correctly-rounded-divide-sqrt ============================================================================================= TESTING: checkC99Flag from config.compilers(config/BuildSystem/config/compilers.py:1430) Check for -std=c99 or equivalent flag Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { float x[2],y; y = FLT_ROUNDS; // c++ comment int j = 2; for (int i=0; i<2; i++){ x[i] = i*j*y; } ; return 0; } Output from compiling with -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 Accepted C99 compile flag: ============================================================================================= TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:158) Check for the C/CXX restrict keyword Executing: mpicc -V ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.c:5:20: warning: unused variable 'x' [-Wunused-variable] float * __restrict x;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set C restrict keyword to __restrict Defined "C_RESTRICT" to "__restrict" ============================================================================================= TESTING: checkCFormatting from config.compilers(config/BuildSystem/config/compilers.py:413) Activate format string checking if using the GNU compilers ============================================================================================= TESTING: checkCInline from config.compilers(config/BuildSystem/config/compilers.py:128) Check for C inline keyword ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set C Inline keyword to inline Defined "C_INLINE" to "inline" ============================================================================================= TESTING: checkDynamicLoadFlag from config.compilers(config/BuildSystem/config/compilers.py:424) Checks that dlopen() takes RTLD_XXX, and defines PETSC_HAVE_RTLD_XXX if it does ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LAZY);dlopen(libname, RTLD_NOW);dlopen(libname, RTLD_LOCAL);dlopen(libname, RTLD_GLOBAL); ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.o -ldl -lgcc_s.1 Defined "HAVE_RTLD_LAZY" to "1" Defined "HAVE_RTLD_NOW" to "1" Defined "HAVE_RTLD_LOCAL" to "1" Defined "HAVE_RTLD_GLOBAL" to "1" ============================================================================================= TESTING: checkCLibraries from config.compilers(config/BuildSystem/config/compilers.py:222) Determines the libraries needed to link with C compiled code ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void asub(void) {char s[16];printf("testing %s",s);} ===== Checking linker Executing: mpif90 -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.F90 Successful compile: Source: program main print*,'testing' stop end Executing: mpif90 -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/confc.o -ldl -lgcc_s.1 C libraries are not needed when using Fortran linker ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void asub(void) {char s[16];printf("testing %s",s);} ===== Checking linker Executing: mpicxx -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O3 -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Executing: mpicxx -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/confc.o -ldl -lgcc_s.1 C libraries are not needed when using C++ linker ============================================================================================= TESTING: checkDependencyGenerationFlag from config.compilers(config/BuildSystem/config/compilers.py:1381) Check if -MMD works for dependency generation, and add it if it does Trying C compiler flag -MMD -MP Defined make macro "C_DEPFLAGS" to "-MMD -MP" Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 -MMD -MP /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 -MMD -MP Trying Cxx compiler flag -MMD -MP Defined make macro "CXX_DEPFLAGS" to "-MMD -MP" Executing: mpicxx -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O3 -fPIC -MMD -MP /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -MMD -MP Executing: mpicxx --help | head -n 20 stdout: OVERVIEW: clang LLVM compiler USAGE: clang-9 [options] file... OPTIONS: -### Print (but do not run) the commands to run for this compilation --analyzer-output Static analyzer report output format (html|plist|plist-multi-file|plist-html|text). --analyze Run the static analyzer -arcmt-migrate-emit-errors Emit ARC errors even if the migrator can fix them -arcmt-migrate-report-output Output path for the plist report -B Add to search path for binaries and object files used implicitly -CC Include comments from within macros in preprocessed output -cfguard Emit tables required for Windows Control Flow Guard. -cl-denorms-are-zero OpenCL only. Allow denormals to be flushed to zero. -cl-fast-relaxed-math OpenCL only. Sets -cl-finite-math-only and -cl-unsafe-math-optimizations, and defines __FAST_RELAXED_MATH__. -cl-finite-math-only OpenCL only. Allow floating-point optimizations that assume arguments and results are not NaNs or +-Inf. -cl-fp32-correctly-rounded-divide-sqrt ============================================================================================= TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:158) Check for the C/CXX restrict keyword Executing: mpicc -V ===== Checking compiler Executing: mpicxx -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O3 -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.cc Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.cc:5:20: warning: unused variable 'x' [-Wunused-variable] float * __restrict x;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set Cxx restrict keyword to __restrict Defined "CXX_RESTRICT" to "__restrict" ============================================================================================= TESTING: checkCxxDialect from config.compilers(config/BuildSystem/config/compilers.py:471) Determine the CXX dialect supported by the compiler(language) [and correspoding compiler option - if any]. isGNU indicates if the compiler is g++. -with--dialect can take options: auto: use highest dialect configure can determine cxx17: [future?] cxx14: gnu++14 or c++14 cxx11: gnu++11 or c++11 0: disable CxxDialect check and use compiler default checkCxxDialect: checking CXX11 for Cxx with flag: Defined "HAVE_CXX_DIALECT_CXX11" to "1" Executing: mpicxx -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O3 -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include template constexpr T Cubed( T x ) { return x*x*x; } int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); std::cout << x; ; return 0; } Output from compiling with -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O3 ============================================================================================= TESTING: checkCxxOptionalExtensions from config.compilers(config/BuildSystem/config/compilers.py:443) Check whether the C++ compiler (IBM xlC, OSF5) need special flag for .c files which contain C++ Executing: mpicxx -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O3 -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: clang-9: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated [-Wdeprecated] /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.c:5:22: warning: private field 'i' is not used [-Wunused-private-field] class somename { int i; };; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Output from compiling with -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O3 clang-9: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated [-Wdeprecated] /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.c:5:22: warning: private field 'i' is not used [-Wunused-private-field] class somename { int i; };; ^ 1 warning generated. ============================================================================================= TESTING: checkCxxInline from config.compilers(config/BuildSystem/config/compilers.py:143) Check for C++ inline keyword ===== Checking compiler Executing: mpicxx -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O3 -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set Cxx Inline keyword to inline Defined "CXX_INLINE" to "inline" ============================================================================================= TESTING: checkCxxLibraries from config.compilers(config/BuildSystem/config/compilers.py:566) Determines the libraries needed to link with C++ from C and Fortran ===== Checking compiler Executing: mpicxx -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O3 -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/confc.o -ldl -lgcc_s.1 Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "std::__1::locale::use_facet(std::__1::locale::id&) const", referenced from: std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "std::__1::ios_base::getloc() const", referenced from: std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "std::__1::basic_ostream >::sentry::sentry(std::__1::basic_ostream >&)", referenced from: std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "std::__1::basic_ostream >::sentry::~sentry()", referenced from: std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "std::__1::cout", referenced from: asub() in confc.o "std::__1::ctype::id", referenced from: std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "std::__1::locale::~locale()", referenced from: std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "std::__1::ios_base::__set_badbit_and_consider_rethrow()", referenced from: std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "std::__1::ios_base::clear(unsigned int)", referenced from: std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "std::terminate()", referenced from: ___clang_call_terminate in confc.o "typeinfo for int", referenced from: asub() in confc.o GCC_except_table0 in confc.o "operator delete(void*)", referenced from: std::__1::ostreambuf_iterator > std::__1::__pad_and_output >(std::__1::ostreambuf_iterator >, char const*, char const*, char const*, std::__1::ios_base&, char) in confc.o "operator new(unsigned long)", referenced from: std::__1::ostreambuf_iterator > std::__1::__pad_and_output >(std::__1::ostreambuf_iterator >, char const*, char const*, char const*, std::__1::ios_base&, char) in confc.o "___cxa_allocate_exception", referenced from: asub() in confc.o "___cxa_begin_catch", referenced from: asub() in confc.o ___clang_call_terminate in confc.o std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "___cxa_end_catch", referenced from: asub() in confc.o std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "___cxa_throw", referenced from: asub() in confc.o "___gxx_personality_v0", referenced from: asub() in confc.o std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o std::__1::ostreambuf_iterator > std::__1::__pad_and_output >(std::__1::ostreambuf_iterator >, char const*, char const*, char const*, std::__1::ios_base&, char) in confc.o Dwarf Exception Unwind Info (__eh_frame) in confc.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "std::__1::locale::use_facet(std::__1::locale::id&) const", referenced from: std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "std::__1::ios_base::getloc() const", referenced from: std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "std::__1::basic_ostream >::sentry::sentry(std::__1::basic_ostream >&)", referenced from: std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "std::__1::basic_ostream >::sentry::~sentry()", referenced from: std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "std::__1::cout", referenced from: asub() in confc.o "std::__1::ctype::id", referenced from: std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "std::__1::locale::~locale()", referenced from: std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "std::__1::ios_base::__set_badbit_and_consider_rethrow()", referenced from: std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "std::__1::ios_base::clear(unsigned int)", referenced from: std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "std::terminate()", referenced from: ___clang_call_terminate in confc.o "typeinfo for int", referenced from: asub() in confc.o GCC_except_table0 in confc.o "operator delete(void*)", referenced from: std::__1::ostreambuf_iterator > std::__1::__pad_and_output >(std::__1::ostreambuf_iterator >, char const*, char const*, char const*, std::__1::ios_base&, char) in confc.o "operator new(unsigned long)", referenced from: std::__1::ostreambuf_iterator > std::__1::__pad_and_output >(std::__1::ostreambuf_iterator >, char const*, char const*, char const*, std::__1::ios_base&, char) in confc.o "___cxa_allocate_exception", referenced from: asub() in confc.o "___cxa_begin_catch", referenced from: asub() in confc.o ___clang_call_terminate in confc.o std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "___cxa_end_catch", referenced from: asub() in confc.o std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "___cxa_throw", referenced from: asub() in confc.o "___gxx_personality_v0", referenced from: asub() in confc.o std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o std::__1::ostreambuf_iterator > std::__1::__pad_and_output >(std::__1::ostreambuf_iterator >, char const*, char const*, char const*, std::__1::ios_base&, char) in confc.o Dwarf Exception Unwind Info (__eh_frame) in confc.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "std::__1::locale::use_facet(std::__1::locale::id&) const", referenced from: std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "std::__1::ios_base::getloc() const", referenced from: std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "std::__1::basic_ostream >::sentry::sentry(std::__1::basic_ostream >&)", referenced from: std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "std::__1::basic_ostream >::sentry::~sentry()", referenced from: std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "std::__1::cout", referenced from: asub() in confc.o "std::__1::ctype::id", referenced from: std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "std::__1::locale::~locale()", referenced from: std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "std::__1::ios_base::__set_badbit_and_consider_rethrow()", referenced from: std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "std::__1::ios_base::clear(unsigned int)", referenced from: std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "std::terminate()", referenced from: ___clang_call_terminate in confc.o "typeinfo for int", referenced from: asub() in confc.o GCC_except_table0 in confc.o "operator delete(void*)", referenced from: std::__1::ostreambuf_iterator > std::__1::__pad_and_output >(std::__1::ostreambuf_iterator >, char const*, char const*, char const*, std::__1::ios_base&, char) in confc.o "operator new(unsigned long)", referenced from: std::__1::ostreambuf_iterator > std::__1::__pad_and_output >(std::__1::ostreambuf_iterator >, char const*, char const*, char const*, std::__1::ios_base&, char) in confc.o "___cxa_allocate_exception", referenced from: asub() in confc.o "___cxa_begin_catch", referenced from: asub() in confc.o ___clang_call_terminate in confc.o std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "___cxa_end_catch", referenced from: asub() in confc.o std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "___cxa_throw", referenced from: asub() in confc.o "___gxx_personality_v0", referenced from: asub() in confc.o std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o std::__1::ostreambuf_iterator > std::__1::__pad_and_output >(std::__1::ostreambuf_iterator >, char const*, char const*, char const*, std::__1::ios_base&, char) in confc.o Dwarf Exception Unwind Info (__eh_frame) in confc.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation): Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS Executing: mpicc --help | head -n 500 Detected CLANG compiler ===== Checking compiler Executing: mpicxx -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O3 -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/confc.o -lc++ -ldl -lgcc_s.1 compilers: C++ requires -lc++ to link with C compiler ===== Checking compiler Executing: mpicxx -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O3 -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} ===== Checking linker Executing: mpif90 -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.F90 Successful compile: Source: program main print*,'testing' stop end Executing: mpif90 -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/confc.o -lc++ -ldl -lgcc_s.1 C++ libraries are not needed when using FC linker Executing: mpicxx -V ============================================================================================= TESTING: checkFortranNameMangling from config.compilers(config/BuildSystem/config/compilers.py:873) Checks Fortran name mangling, and defines HAVE_FORTRAN_UNDERSCORE, HAVE_FORTRAN_NOUNDERSCORE, HAVE_FORTRAN_CAPS Testing Fortran mangling type underscore with code void d1chk_(void){return;} ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1chk_(void){return;} ===== Checking linker Executing: mpif90 -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.F90 Successful compile: Source: program main call d1chk() end Executing: mpif90 -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/confc.o -lc++ -ldl -lgcc_s.1 compilers: Fortran name mangling is underscore Defined "HAVE_FORTRAN_UNDERSCORE" to "1" Executing: mpif90 --version stdout: GNU Fortran (GCC) 7.3.0 Copyright (C) 2017 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Defined "FORTRAN_CHARLEN_T" to "int" ============================================================================================= TESTING: checkFortranNameManglingDouble from config.compilers(config/BuildSystem/config/compilers.py:911) Checks if symbols containing an underscore append an extra underscore, and defines HAVE_FORTRAN_UNDERSCORE_UNDERSCORE if necessary ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1_chk__(void){return;} ===== Checking linker Executing: mpif90 -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.F90 Successful compile: Source: program main call d1_chk() end Executing: mpif90 -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/confc.o -lc++ -ldl -lgcc_s.1 Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_d1_chk_", referenced from: _main in conftest.o (maybe you meant: _d1_chk__) ld: symbol(s) not found for architecture x86_64 collect2: error: ld returned 1 exit status Linker output before filtering: Undefined symbols for architecture x86_64: "_d1_chk_", referenced from: _main in conftest.o (maybe you meant: _d1_chk__) ld: symbol(s) not found for architecture x86_64 collect2: error: ld returned 1 exit status : Linker output after filtering: Undefined symbols for architecture x86_64: "_d1_chk_", referenced from: _main in conftest.o (maybe you meant: _d1_chk__) ld: symbol(s) not found for architecture x86_64 collect2: error: ld returned 1 exit status: ============================================================================================= TESTING: checkFortranLibraries from config.compilers(config/BuildSystem/config/compilers.py:921) Substitutes for FLIBS the libraries needed to link with Fortran This macro is intended to be used in those situations when it is necessary to mix, e.g. C++ and Fortran 77, source code into a single program or shared library. For example, if object files from a C++ and Fortran 77 compiler must be linked together, then the C++ compiler/linker must be used for linking (since special C++-ish things need to happen at link time like calling global constructors, instantiating templates, enabling exception support, etc.). However, the Fortran 77 intrinsic and run-time libraries must be linked in as well, but the C++ compiler/linker does not know how to add these Fortran 77 libraries. This code was translated from the autoconf macro which was packaged in its current form by Matthew D. Langston . However, nearly all of this macro came from the OCTAVE_FLIBS macro in octave-2.0.13/aclocal.m4, and full credit should go to John W. Eaton for writing this extremely useful macro. ===== Checking linker Executing: mpif90 -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.F90 Successful compile: Source: program main #include call MPI_Allreduce() end Executing: mpif90 -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.o -lc++ -ldl -lgcc_s.1 ===== Checking compiler Executing: mpif90 -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.F90 Successful compile: Source: subroutine asub() print*,'testing' call MPI_Allreduce() return end ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern void asub_(void); int main(int argc,char **args) { asub_(); return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/confc.o -lc++ -ldl -lgcc_s.1 Possible ERROR while running linker: exit code 1 stderr: ld: warning: object file (/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/confc.o) was built for newer OSX version (10.14) than being linked (10.9) Undefined symbols for architecture x86_64: "__gfortran_st_write", referenced from: _asub_ in confc.o "__gfortran_st_write_done", referenced from: _asub_ in confc.o "__gfortran_transfer_character_write", referenced from: _asub_ in confc.o "_mpi_allreduce_", referenced from: _asub_ in confc.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: ld: warning: object file (/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/confc.o) was built for newer OSX version (10.14) than being linked (10.9) Undefined symbols for architecture x86_64: "__gfortran_st_write", referenced from: _asub_ in confc.o "__gfortran_st_write_done", referenced from: _asub_ in confc.o "__gfortran_transfer_character_write", referenced from: _asub_ in confc.o "_mpi_allreduce_", referenced from: _asub_ in confc.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: ld: warning: object file (/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/confc.o) was built for newer OSX version (10.14) than being linked (10.9) Undefined symbols for architecture x86_64: "__gfortran_st_write", referenced from: _asub_ in confc.o "__gfortran_st_write_done", referenced from: _asub_ in confc.o "__gfortran_transfer_character_write", referenced from: _asub_ in confc.o "_mpi_allreduce_", referenced from: _asub_ in confc.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation): Fortran code cannot directly be linked with C linker, therefore will determine needed Fortran libraries Executing: mpif90 -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.F90 Successful compile: Source: program main end Executing: mpif90 -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest -v -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.o -lc++ -ldl -lgcc_s.1 stdout: mpifort for MPICH version 3.3.2 Possible ERROR while running linker: stdout: mpifort for MPICH version 3.3.2stderr: Driving: x86_64-apple-darwin13.4.0-gfortran -march=core2 -mtune=haswell -Wl,-rpath,/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -Wl,-commons,use_dylibs -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest -v -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.o -lc++ -ldl -lgcc_s.1 -I/Users/kongf/projects/miniconda3/envs/moose-mpich/include -I/Users/kongf/projects/miniconda3/envs/moose-mpich/include -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -lmpifort -lmpi -lpmpi -mmacosx-version-min=10.14.7 -asm_macosx_version_min=10.14 -l gfortran -shared-libgcc Using built-in specs. COLLECT_GCC=x86_64-apple-darwin13.4.0-gfortran COLLECT_LTO_WRAPPER=/Users/kongf/projects/miniconda3/envs/moose-mpich/libexec/gcc/x86_64-apple-darwin13.4.0/7.3.0/lto-wrapper Target: x86_64-apple-darwin13.4.0 Configured with: ../configure --prefix=/Users/kongf/projects/miniconda3/envs/moose-mpich --with-libiconv-prefix=/Users/kongf/projects/miniconda3/envs/moose-mpich --enable-languages=c,fortran --with-tune=generic --disable-multilib --enable-checking=release --disable-bootstrap --build=x86_64-apple-darwin13.4.0 --with-gmp=/Users/kongf/projects/miniconda3/envs/moose-mpich --with-mpfr=/Users/kongf/projects/miniconda3/envs/moose-mpich --with-mpc=/Users/kongf/projects/miniconda3/envs/moose-mpich --with-isl=/Users/kongf/projects/miniconda3/envs/moose-mpich Thread model: posix gcc version 7.3.0 (GCC) Reading specs from /Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0/../../../libgfortran.spec rename spec lib to liborig COLLECT_GCC_OPTIONS='-march=core2' '-mtune=haswell' '-L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib' '-o' '/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest' '-v' '-Wall' '-ffree-line-length-0' '-Wno-unused-dummy-argument' '-g' '-O' '-I' '/Users/kongf/projects/miniconda3/envs/moose-mpich/include' '-I' '/Users/kongf/projects/miniconda3/envs/moose-mpich/include' '-L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib' '-mmacosx-version-min=10.14.7' '-asm_macosx_version_min=10.14' '-shared-libgcc' COMPILER_PATH=/Users/kongf/projects/miniconda3/envs/moose-mpich/libexec/gcc/x86_64-apple-darwin13.4.0/7.3.0/:/Users/kongf/projects/miniconda3/envs/moose-mpich/libexec/gcc/x86_64-apple-darwin13.4.0/7.3.0/:/Users/kongf/projects/miniconda3/envs/moose-mpich/libexec/gcc/x86_64-apple-darwin13.4.0/:/Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0/:/Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/ LIBRARY_PATH=/Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0/:/Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0/../../../ COLLECT_GCC_OPTIONS='-march=core2' '-mtune=haswell' '-L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib' '-o' '/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest' '-v' '-Wall' '-ffree-line-length-0' '-Wno-unused-dummy-argument' '-g' '-O' '-I' '/Users/kongf/projects/miniconda3/envs/moose-mpich/include' '-I' '/Users/kongf/projects/miniconda3/envs/moose-mpich/include' '-L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib' '-mmacosx-version-min=10.14.7' '-asm_macosx_version_min=10.14' '-shared-libgcc' /Users/kongf/projects/miniconda3/envs/moose-mpich/libexec/gcc/x86_64-apple-darwin13.4.0/7.3.0/collect2 -dynamic -arch x86_64 -macosx_version_min 10.14.7 -weak_reference_mismatches non-weak -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0 -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0/../../.. -rpath /Users/kongf/projects/miniconda3/envs/moose-mpich/lib -commons use_dylibs -bind_at_load -multiply_defined suppress -multiply_defined suppress -commons use_dylibs -search_paths_first -no_compact_unwind /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.o -lc++ -lgcc_s.1 -lmpifort -lmpi -lpmpi -lgfortran -no_compact_unwind -lSystem -lgcc_ext.10.5 -lgcc -lquadmath -lm -lgcc_ext.10.5 -lgcc -lSystem -rpath /Users/kongf/projects/miniconda3/envs/moose-mpich/lib -v -idsym collect2 version 7.3.0 /Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0/ld -dynamic -arch x86_64 -macosx_version_min 10.14.7 -weak_reference_mismatches non-weak -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0 -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0/../../.. -rpath /Users/kongf/projects/miniconda3/envs/moose-mpich/lib -commons use_dylibs -bind_at_load -multiply_defined suppress -multiply_defined suppress -commons use_dylibs -search_paths_first -no_compact_unwind /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.o -lc++ -lgcc_s.1 -lmpifort -lmpi -lpmpi -lgfortran -no_compact_unwind -lSystem -lgcc_ext.10.5 -lgcc -lquadmath -lm -lgcc_ext.10.5 -lgcc -lSystem -rpath /Users/kongf/projects/miniconda3/envs/moose-mpich/lib -v @(#)PROGRAM:ld PROJECT:ld64-450.3 BUILD 23:46:44 Jan 25 2020 configured to support archs: armv6 armv7 armv7s arm64 arm64e arm64_32 i386 x86_64 x86_64h armv6m armv7k armv7m armv7em (tvOS) Library search paths: /Users/kongf/projects/miniconda3/envs/moose-mpich/lib /Users/kongf/projects/miniconda3/envs/moose-mpich/lib /Users/kongf/projects/miniconda3/envs/moose-mpich/lib /Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0 /Users/kongf/projects/miniconda3/envs/moose-mpich/lib /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Framework search paths: /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/ /Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0/nm -n /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.o dsymutil /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest Linker output before filtering: mpifort for MPICH version 3.3.2 Driving: x86_64-apple-darwin13.4.0-gfortran -march=core2 -mtune=haswell -Wl,-rpath,/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -Wl,-commons,use_dylibs -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest -v -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.o -lc++ -ldl -lgcc_s.1 -I/Users/kongf/projects/miniconda3/envs/moose-mpich/include -I/Users/kongf/projects/miniconda3/envs/moose-mpich/include -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -lmpifort -lmpi -lpmpi -mmacosx-version-min=10.14.7 -asm_macosx_version_min=10.14 -l gfortran -shared-libgcc Using built-in specs. COLLECT_GCC=x86_64-apple-darwin13.4.0-gfortran COLLECT_LTO_WRAPPER=/Users/kongf/projects/miniconda3/envs/moose-mpich/libexec/gcc/x86_64-apple-darwin13.4.0/7.3.0/lto-wrapper Target: x86_64-apple-darwin13.4.0 Configured with: ../configure --prefix=/Users/kongf/projects/miniconda3/envs/moose-mpich --with-libiconv-prefix=/Users/kongf/projects/miniconda3/envs/moose-mpich --enable-languages=c,fortran --with-tune=generic --disable-multilib --enable-checking=release --disable-bootstrap --build=x86_64-apple-darwin13.4.0 --with-gmp=/Users/kongf/projects/miniconda3/envs/moose-mpich --with-mpfr=/Users/kongf/projects/miniconda3/envs/moose-mpich --with-mpc=/Users/kongf/projects/miniconda3/envs/moose-mpich --with-isl=/Users/kongf/projects/miniconda3/envs/moose-mpich Thread model: posix gcc version 7.3.0 (GCC) Reading specs from /Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0/../../../libgfortran.spec rename spec lib to liborig COLLECT_GCC_OPTIONS='-march=core2' '-mtune=haswell' '-L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib' '-o' '/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest' '-v' '-Wall' '-ffree-line-length-0' '-Wno-unused-dummy-argument' '-g' '-O' '-I' '/Users/kongf/projects/miniconda3/envs/moose-mpich/include' '-I' '/Users/kongf/projects/miniconda3/envs/moose-mpich/include' '-L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib' '-mmacosx-version-min=10.14.7' '-asm_macosx_version_min=10.14' '-shared-libgcc' COMPILER_PATH=/Users/kongf/projects/miniconda3/envs/moose-mpich/libexec/gcc/x86_64-apple-darwin13.4.0/7.3.0/:/Users/kongf/projects/miniconda3/envs/moose-mpich/libexec/gcc/x86_64-apple-darwin13.4.0/7.3.0/:/Users/kongf/projects/miniconda3/envs/moose-mpich/libexec/gcc/x86_64-apple-darwin13.4.0/:/Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0/:/Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/ LIBRARY_PATH=/Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0/:/Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0/../../../ COLLECT_GCC_OPTIONS='-march=core2' '-mtune=haswell' '-L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib' '-o' '/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest' '-v' '-Wall' '-ffree-line-length-0' '-Wno-unused-dummy-argument' '-g' '-O' '-I' '/Users/kongf/projects/miniconda3/envs/moose-mpich/include' '-I' '/Users/kongf/projects/miniconda3/envs/moose-mpich/include' '-L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib' '-mmacosx-version-min=10.14.7' '-asm_macosx_version_min=10.14' '-shared-libgcc' /Users/kongf/projects/miniconda3/envs/moose-mpich/libexec/gcc/x86_64-apple-darwin13.4.0/7.3.0/collect2 -dynamic -arch x86_64 -macosx_version_min 10.14.7 -weak_reference_mismatches non-weak -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0 -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0/../../.. -rpath /Users/kongf/projects/miniconda3/envs/moose-mpich/lib -commons use_dylibs -bind_at_load -multiply_defined suppress -multiply_defined suppress -commons use_dylibs -search_paths_first -no_compact_unwind /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.o -lc++ -lgcc_s.1 -lmpifort -lmpi -lpmpi -lgfortran -no_compact_unwind -lSystem -lgcc_ext.10.5 -lgcc -lquadmath -lm -lgcc_ext.10.5 -lgcc -lSystem -rpath /Users/kongf/projects/miniconda3/envs/moose-mpich/lib -v -idsym collect2 version 7.3.0 /Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0/ld -dynamic -arch x86_64 -macosx_version_min 10.14.7 -weak_reference_mismatches non-weak -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0 -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0/../../.. -rpath /Users/kongf/projects/miniconda3/envs/moose-mpich/lib -commons use_dylibs -bind_at_load -multiply_defined suppress -multiply_defined suppress -commons use_dylibs -search_paths_first -no_compact_unwind /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.o -lc++ -lgcc_s.1 -lmpifort -lmpi -lpmpi -lgfortran -no_compact_unwind -lSystem -lgcc_ext.10.5 -lgcc -lquadmath -lm -lgcc_ext.10.5 -lgcc -lSystem -rpath /Users/kongf/projects/miniconda3/envs/moose-mpich/lib -v @(#)PROGRAM:ld PROJECT:ld64-450.3 BUILD 23:46:44 Jan 25 2020 configured to support archs: armv6 armv7 armv7s arm64 arm64e arm64_32 i386 x86_64 x86_64h armv6m armv7k armv7m armv7em (tvOS) Library search paths: /Users/kongf/projects/miniconda3/envs/moose-mpich/lib /Users/kongf/projects/miniconda3/envs/moose-mpich/lib /Users/kongf/projects/miniconda3/envs/moose-mpich/lib /Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0 /Users/kongf/projects/miniconda3/envs/moose-mpich/lib /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Framework search paths: /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/ /Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0/nm -n /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.o dsymutil /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest : Linker output after filtering: mpifort for MPICH version 3.3.2 Driving: x86_64-apple-darwin13.4.0-gfortran -march=core2 -mtune=haswell -Wl,-rpath,/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -Wl,-commons,use_dylibs -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest -v -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.o -lc++ -ldl -lgcc_s.1 -I/Users/kongf/projects/miniconda3/envs/moose-mpich/include -I/Users/kongf/projects/miniconda3/envs/moose-mpich/include -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -lmpifort -lmpi -lpmpi -mmacosx-version-min=10.14.7 -asm_macosx_version_min=10.14 -l gfortran -shared-libgcc Using built-in specs. COLLECT_GCC=x86_64-apple-darwin13.4.0-gfortran COLLECT_LTO_WRAPPER=/Users/kongf/projects/miniconda3/envs/moose-mpich/libexec/gcc/x86_64-apple-darwin13.4.0/7.3.0/lto-wrapper Target: x86_64-apple-darwin13.4.0 Configured with: ../configure --prefix=/Users/kongf/projects/miniconda3/envs/moose-mpich --with-libiconv-prefix=/Users/kongf/projects/miniconda3/envs/moose-mpich --enable-languages=c,fortran --with-tune=generic --disable-multilib --enable-checking=release --disable-bootstrap --build=x86_64-apple-darwin13.4.0 --with-gmp=/Users/kongf/projects/miniconda3/envs/moose-mpich --with-mpfr=/Users/kongf/projects/miniconda3/envs/moose-mpich --with-mpc=/Users/kongf/projects/miniconda3/envs/moose-mpich --with-isl=/Users/kongf/projects/miniconda3/envs/moose-mpich Thread model: posix gcc version 7.3.0 (GCC) Reading specs from /Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0/../../../libgfortran.spec rename spec lib to liborig COLLECT_GCC_OPTIONS='-march=core2' '-mtune=haswell' '-L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib' '-o' '/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest' '-v' '-Wall' '-ffree-line-length-0' '-Wno-unused-dummy-argument' '-g' '-O' '-I' '/Users/kongf/projects/miniconda3/envs/moose-mpich/include' '-I' '/Users/kongf/projects/miniconda3/envs/moose-mpich/include' '-L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib' '-mmacosx-version-min=10.14.7' '-asm_macosx_version_min=10.14' '-shared-libgcc' COMPILER_PATH=/Users/kongf/projects/miniconda3/envs/moose-mpich/libexec/gcc/x86_64-apple-darwin13.4.0/7.3.0/:/Users/kongf/projects/miniconda3/envs/moose-mpich/libexec/gcc/x86_64-apple-darwin13.4.0/7.3.0/:/Users/kongf/projects/miniconda3/envs/moose-mpich/libexec/gcc/x86_64-apple-darwin13.4.0/:/Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0/:/Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/ LIBRARY_PATH=/Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0/:/Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0/../../../ COLLECT_GCC_OPTIONS='-march=core2' '-mtune=haswell' '-L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib' '-o' '/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest' '-v' '-Wall' '-ffree-line-length-0' '-Wno-unused-dummy-argument' '-g' '-O' '-I' '/Users/kongf/projects/miniconda3/envs/moose-mpich/include' '-I' '/Users/kongf/projects/miniconda3/envs/moose-mpich/include' '-L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib' '-mmacosx-version-min=10.14.7' '-asm_macosx_version_min=10.14' '-shared-libgcc' /Users/kongf/projects/miniconda3/envs/moose-mpich/libexec/gcc/x86_64-apple-darwin13.4.0/7.3.0/collect2 -dynamic -arch x86_64 -macosx_version_min 10.14.7 -weak_reference_mismatches non-weak -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0 -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0/../../.. -rpath /Users/kongf/projects/miniconda3/envs/moose-mpich/lib -commons use_dylibs -bind_at_load -multiply_defined suppress -multiply_defined suppress -commons use_dylibs -search_paths_first -no_compact_unwind /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.o -lc++ -lgcc_s.1 -lmpifort -lmpi -lpmpi -lgfortran -no_compact_unwind -lSystem -lgcc_ext.10.5 -lgcc -lquadmath -lm -lgcc_ext.10.5 -lgcc -lSystem -rpath /Users/kongf/projects/miniconda3/envs/moose-mpich/lib -v -idsym collect2 version 7.3.0 /Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0/ld -dynamic -arch x86_64 -macosx_version_min 10.14.7 -weak_reference_mismatches non-weak -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0 -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0/../../.. -rpath /Users/kongf/projects/miniconda3/envs/moose-mpich/lib -commons use_dylibs -bind_at_load -multiply_defined suppress -multiply_defined suppress -commons use_dylibs -search_paths_first -no_compact_unwind /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.o -lc++ -lgcc_s.1 -lmpifort -lmpi -lpmpi -lgfortran -no_compact_unwind -lSystem -lgcc_ext.10.5 -lgcc -lquadmath -lm -lgcc_ext.10.5 -lgcc -lSystem -rpath /Users/kongf/projects/miniconda3/envs/moose-mpich/lib -v @(#)PROGRAM:ld PROJECT:ld64-450.3 BUILD 23:46:44 Jan 25 2020 configured to support archs: armv6 armv7 armv7s arm64 arm64e arm64_32 i386 x86_64 x86_64h armv6m armv7k armv7m armv7em (tvOS) Library search paths: /Users/kongf/projects/miniconda3/envs/moose-mpich/lib /Users/kongf/projects/miniconda3/envs/moose-mpich/lib /Users/kongf/projects/miniconda3/envs/moose-mpich/lib /Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0 /Users/kongf/projects/miniconda3/envs/moose-mpich/lib /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Framework search paths: /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/ /Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0/nm -n /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.o dsymutil /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest: compilers: Checking arg mpifort compilers: Unknown arg mpifort compilers: Checking arg for compilers: Unknown arg for compilers: Checking arg MPICH compilers: Unknown arg MPICH compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 3.3.2 compilers: Unknown arg 3.3.2 compilers: Checking arg Driving: compilers: Unknown arg Driving: compilers: Checking arg x86_64-apple-darwin13.4.0-gfortran compilers: Unknown arg x86_64-apple-darwin13.4.0-gfortran compilers: Checking arg -march=core2 compilers: Unknown arg -march=core2 compilers: Checking arg -mtune=haswell compilers: Unknown arg -mtune=haswell compilers: Checking arg -Wl,-rpath,/Users/kongf/projects/miniconda3/envs/moose-mpich/lib compilers: Unknown arg -Wl,-rpath,/Users/kongf/projects/miniconda3/envs/moose-mpich/lib compilers: Checking arg -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib compilers: Found library directory: -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib compilers: Checking arg -Wl,-commons,use_dylibs compilers: Unknown arg -Wl,-commons,use_dylibs compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest compilers: Unknown arg /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg -Wl,-bind_at_load compilers: Unknown arg -Wl,-bind_at_load compilers: Checking arg -Wl,-multiply_defined,suppress compilers: Unknown arg -Wl,-multiply_defined,suppress compilers: Checking arg -Wl,-multiply_defined compilers: Unknown arg -Wl,-multiply_defined compilers: Checking arg -Wl,suppress compilers: Unknown arg -Wl,suppress compilers: Checking arg -Wl,-commons,use_dylibs compilers: Unknown arg -Wl,-commons,use_dylibs compilers: Checking arg -Wl,-search_paths_first compilers: Unknown arg -Wl,-search_paths_first compilers: Checking arg -Wl,-no_compact_unwind compilers: Unknown arg -Wl,-no_compact_unwind compilers: Checking arg -Wall compilers: Unknown arg -Wall compilers: Checking arg -ffree-line-length-0 compilers: Unknown arg -ffree-line-length-0 compilers: Checking arg -Wno-unused-dummy-argument compilers: Unknown arg -Wno-unused-dummy-argument compilers: Checking arg -g compilers: Unknown arg -g compilers: Checking arg -O compilers: Unknown arg -O compilers: Checking arg /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.o compilers: Unknown arg /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.o compilers: Checking arg -lc++ compilers: Found library: -lc++ compilers: Checking arg -ldl compilers: Found library: -ldl compilers: Checking arg -lgcc_s.1 compilers: Found library: -lgcc_s.1 compilers: Checking arg -I/Users/kongf/projects/miniconda3/envs/moose-mpich/include compilers: Found include directory: /Users/kongf/projects/miniconda3/envs/moose-mpich/include compilers: Checking arg -I/Users/kongf/projects/miniconda3/envs/moose-mpich/include compilers: Found include directory: /Users/kongf/projects/miniconda3/envs/moose-mpich/include compilers: Checking arg -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib compilers: Already in lflags so skipping: -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib compilers: Checking arg -lmpifort compilers: Found library: -lmpifort compilers: Checking arg -lmpi compilers: Found library: -lmpi compilers: Checking arg -lpmpi compilers: Found library: -lpmpi compilers: Checking arg -mmacosx-version-min=10.14.7 compilers: Unknown arg -mmacosx-version-min=10.14.7 compilers: Checking arg -asm_macosx_version_min=10.14 compilers: Unknown arg -asm_macosx_version_min=10.14 compilers: Checking arg -l compilers: Found canonical library: -lgfortran compilers: Checking arg -shared-libgcc compilers: Unknown arg -shared-libgcc compilers: Checking arg Using compilers: Unknown arg Using compilers: Checking arg built-in compilers: Unknown arg built-in compilers: Checking arg specs. compilers: Unknown arg specs. compilers: Checking arg COLLECT_GCC=x86_64-apple-darwin13.4.0-gfortran compilers: Unknown arg COLLECT_GCC=x86_64-apple-darwin13.4.0-gfortran compilers: Checking arg COLLECT_LTO_WRAPPER=/Users/kongf/projects/miniconda3/envs/moose-mpich/libexec/gcc/x86_64-apple-darwin13.4.0/7.3.0/lto-wrapper compilers: Unknown arg COLLECT_LTO_WRAPPER=/Users/kongf/projects/miniconda3/envs/moose-mpich/libexec/gcc/x86_64-apple-darwin13.4.0/7.3.0/lto-wrapper compilers: Checking arg Target: compilers: Unknown arg Target: compilers: Checking arg x86_64-apple-darwin13.4.0 compilers: Unknown arg x86_64-apple-darwin13.4.0 compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg ../configure compilers: Unknown arg ../configure compilers: Checking arg --prefix=/Users/kongf/projects/miniconda3/envs/moose-mpich compilers: Unknown arg --prefix=/Users/kongf/projects/miniconda3/envs/moose-mpich compilers: Checking arg --with-libiconv-prefix=/Users/kongf/projects/miniconda3/envs/moose-mpich compilers: Unknown arg --with-libiconv-prefix=/Users/kongf/projects/miniconda3/envs/moose-mpich compilers: Checking arg --enable-languages=c,fortran compilers: Unknown arg --enable-languages=c,fortran compilers: Checking arg --with-tune=generic compilers: Unknown arg --with-tune=generic compilers: Checking arg --disable-multilib compilers: Unknown arg --disable-multilib compilers: Checking arg --enable-checking=release compilers: Unknown arg --enable-checking=release compilers: Checking arg --disable-bootstrap compilers: Unknown arg --disable-bootstrap compilers: Checking arg --build=x86_64-apple-darwin13.4.0 compilers: Unknown arg --build=x86_64-apple-darwin13.4.0 compilers: Checking arg --with-gmp=/Users/kongf/projects/miniconda3/envs/moose-mpich compilers: Unknown arg --with-gmp=/Users/kongf/projects/miniconda3/envs/moose-mpich compilers: Checking arg --with-mpfr=/Users/kongf/projects/miniconda3/envs/moose-mpich compilers: Unknown arg --with-mpfr=/Users/kongf/projects/miniconda3/envs/moose-mpich compilers: Checking arg --with-mpc=/Users/kongf/projects/miniconda3/envs/moose-mpich compilers: Unknown arg --with-mpc=/Users/kongf/projects/miniconda3/envs/moose-mpich compilers: Checking arg --with-isl=/Users/kongf/projects/miniconda3/envs/moose-mpich compilers: Unknown arg --with-isl=/Users/kongf/projects/miniconda3/envs/moose-mpich compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 7.3.0 compilers: Unknown arg 7.3.0 compilers: Checking arg (GCC) compilers: Unknown arg (GCC) compilers: Checking arg Reading compilers: Unknown arg Reading compilers: Checking arg specs compilers: Unknown arg specs compilers: Checking arg from compilers: Unknown arg from compilers: Checking arg /Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0/../../../libgfortran.spec compilers: Unknown arg /Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0/../../../libgfortran.spec compilers: Checking arg rename compilers: Unknown arg rename compilers: Checking arg spec compilers: Unknown arg spec compilers: Checking arg lib compilers: Unknown arg lib compilers: Checking arg to compilers: Unknown arg to compilers: Checking arg liborig compilers: Unknown arg liborig compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg COMPILER_PATH=/Users/kongf/projects/miniconda3/envs/moose-mpich/libexec/gcc/x86_64-apple-darwin13.4.0/7.3.0/:/Users/kongf/projects/miniconda3/envs/moose-mpich/libexec/gcc/x86_64-apple-darwin13.4.0/7.3.0/:/Users/kongf/projects/miniconda3/envs/moose-mpich/libexec/gcc/x86_64-apple-darwin13.4.0/:/Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0/:/Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/ compilers: Skipping arg COMPILER_PATH=/Users/kongf/projects/miniconda3/envs/moose-mpich/libexec/gcc/x86_64-apple-darwin13.4.0/7.3.0/:/Users/kongf/projects/miniconda3/envs/moose-mpich/libexec/gcc/x86_64-apple-darwin13.4.0/7.3.0/:/Users/kongf/projects/miniconda3/envs/moose-mpich/libexec/gcc/x86_64-apple-darwin13.4.0/:/Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0/:/Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/ compilers: Checking arg LIBRARY_PATH=/Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0/:/Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0/../../../ compilers: Skipping arg LIBRARY_PATH=/Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0/:/Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0/../../../ compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg /Users/kongf/projects/miniconda3/envs/moose-mpich/libexec/gcc/x86_64-apple-darwin13.4.0/7.3.0/collect2 compilers: Unknown arg /Users/kongf/projects/miniconda3/envs/moose-mpich/libexec/gcc/x86_64-apple-darwin13.4.0/7.3.0/collect2 compilers: Checking arg -dynamic compilers: Unknown arg -dynamic compilers: Checking arg -arch compilers: Unknown arg -arch compilers: Checking arg x86_64 compilers: Unknown arg x86_64 compilers: Checking arg -macosx_version_min compilers: Unknown arg -macosx_version_min compilers: Checking arg 10.14.7 compilers: Unknown arg 10.14.7 compilers: Checking arg -weak_reference_mismatches compilers: Unknown arg -weak_reference_mismatches compilers: Checking arg non-weak compilers: Unknown arg non-weak compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest compilers: Unknown arg /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest compilers: Checking arg -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib compilers: Already in lflags so skipping: -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib compilers: Checking arg -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib compilers: Already in lflags so skipping: -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib compilers: Checking arg -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0 compilers: Found library directory: -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0 compilers: Checking arg -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0/../../.. compilers: Already in lflags so skipping: -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib compilers: Checking arg -rpath compilers: Found -rpath library: /Users/kongf/projects/miniconda3/envs/moose-mpich/lib compilers: Checking arg -commons compilers: Unknown arg -commons compilers: Checking arg use_dylibs compilers: Unknown arg use_dylibs compilers: Checking arg -bind_at_load compilers: Unknown arg -bind_at_load compilers: Checking arg -multiply_defined compilers: Unknown arg -multiply_defined compilers: Checking arg suppress compilers: Unknown arg suppress compilers: Checking arg -multiply_defined compilers: Unknown arg -multiply_defined compilers: Checking arg suppress compilers: Unknown arg suppress compilers: Checking arg -commons compilers: Unknown arg -commons compilers: Checking arg use_dylibs compilers: Unknown arg use_dylibs compilers: Checking arg -search_paths_first compilers: Unknown arg -search_paths_first compilers: Checking arg -no_compact_unwind compilers: Unknown arg -no_compact_unwind compilers: Checking arg /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.o compilers: Unknown arg /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.o compilers: Checking arg -lc++ compilers: Already in lflags: -lc++ compilers: Checking arg -lgcc_s.1 compilers: Already in lflags: -lgcc_s.1 compilers: Checking arg -lmpifort compilers: Already in lflags: -lmpifort compilers: Checking arg -lmpi compilers: Already in lflags: -lmpi compilers: Checking arg -lpmpi compilers: Already in lflags: -lpmpi compilers: Checking arg -lgfortran compilers: Found library: -lgfortran compilers: Checking arg -no_compact_unwind compilers: Unknown arg -no_compact_unwind compilers: Checking arg -lSystem compilers: Found system library therefore skipping: -lSystem compilers: Checking arg -lgcc_ext.10.5 compilers: Found system library therefore skipping: -lgcc_ext.10.5 compilers: Checking arg -lgcc compilers: Found system library therefore skipping: -lgcc compilers: Checking arg -lquadmath compilers: Found library: -lquadmath compilers: Checking arg -lm compilers: Found library: -lm compilers: Checking arg -lgcc_ext.10.5 compilers: Found system library therefore skipping: -lgcc_ext.10.5 compilers: Checking arg -lgcc compilers: Found system library therefore skipping: -lgcc compilers: Checking arg -lSystem compilers: Found system library therefore skipping: -lSystem compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg -idsym compilers: Unknown arg -idsym compilers: Checking arg collect2 compilers: Unknown arg collect2 compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 7.3.0 compilers: Unknown arg 7.3.0 compilers: Checking arg /Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0/ld compilers: Unknown arg /Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0/ld compilers: Checking arg -dynamic compilers: Unknown arg -dynamic compilers: Checking arg -arch compilers: Unknown arg -arch compilers: Checking arg x86_64 compilers: Unknown arg x86_64 compilers: Checking arg -macosx_version_min compilers: Unknown arg -macosx_version_min compilers: Checking arg 10.14.7 compilers: Unknown arg 10.14.7 compilers: Checking arg -weak_reference_mismatches compilers: Unknown arg -weak_reference_mismatches compilers: Checking arg non-weak compilers: Unknown arg non-weak compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest compilers: Unknown arg /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest compilers: Checking arg -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib compilers: Already in lflags so skipping: -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib compilers: Checking arg -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib compilers: Already in lflags so skipping: -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib compilers: Checking arg -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0 compilers: Already in lflags so skipping: -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0 compilers: Checking arg -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0/../../.. compilers: Already in lflags so skipping: -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -commons compilers: Unknown arg -commons compilers: Checking arg use_dylibs compilers: Unknown arg use_dylibs compilers: Checking arg -bind_at_load compilers: Unknown arg -bind_at_load compilers: Checking arg -multiply_defined compilers: Unknown arg -multiply_defined compilers: Checking arg suppress compilers: Unknown arg suppress compilers: Checking arg -multiply_defined compilers: Unknown arg -multiply_defined compilers: Checking arg suppress compilers: Unknown arg suppress compilers: Checking arg -commons compilers: Unknown arg -commons compilers: Checking arg use_dylibs compilers: Unknown arg use_dylibs compilers: Checking arg -search_paths_first compilers: Unknown arg -search_paths_first compilers: Checking arg -no_compact_unwind compilers: Unknown arg -no_compact_unwind compilers: Checking arg /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.o compilers: Unknown arg /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.o compilers: Checking arg -lc++ compilers: Already in lflags: -lc++ compilers: Checking arg -lgcc_s.1 compilers: Already in lflags: -lgcc_s.1 compilers: Checking arg -lmpifort compilers: Already in lflags: -lmpifort compilers: Checking arg -lmpi compilers: Already in lflags: -lmpi compilers: Checking arg -lpmpi compilers: Already in lflags: -lpmpi compilers: Checking arg -lgfortran compilers: Already in lflags: -lgfortran compilers: Checking arg -no_compact_unwind compilers: Unknown arg -no_compact_unwind compilers: Checking arg -lSystem compilers: Found system library therefore skipping: -lSystem compilers: Checking arg -lgcc_ext.10.5 compilers: Found system library therefore skipping: -lgcc_ext.10.5 compilers: Checking arg -lgcc compilers: Found system library therefore skipping: -lgcc compilers: Checking arg -lquadmath compilers: Already in lflags: -lquadmath compilers: Checking arg -lm compilers: Already in lflags: -lm compilers: Checking arg -lgcc_ext.10.5 compilers: Found system library therefore skipping: -lgcc_ext.10.5 compilers: Checking arg -lgcc compilers: Found system library therefore skipping: -lgcc compilers: Checking arg -lSystem compilers: Found system library therefore skipping: -lSystem compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg @(#)PROGRAM:ld compilers: Unknown arg @(#)PROGRAM:ld compilers: Checking arg PROJECT:ld64-450.3 compilers: Unknown arg PROJECT:ld64-450.3 compilers: Checking arg BUILD compilers: Unknown arg BUILD compilers: Checking arg 23:46:44 compilers: Unknown arg 23:46:44 compilers: Checking arg Jan compilers: Unknown arg Jan compilers: Checking arg 25 compilers: Unknown arg 25 compilers: Checking arg 2020 compilers: Unknown arg 2020 compilers: Checking arg configured compilers: Unknown arg configured compilers: Checking arg to compilers: Unknown arg to compilers: Checking arg support compilers: Unknown arg support compilers: Checking arg archs: compilers: Unknown arg archs: compilers: Checking arg armv6 compilers: Unknown arg armv6 compilers: Checking arg armv7 compilers: Unknown arg armv7 compilers: Checking arg armv7s compilers: Unknown arg armv7s compilers: Checking arg arm64 compilers: Unknown arg arm64 compilers: Checking arg arm64e compilers: Unknown arg arm64e compilers: Checking arg arm64_32 compilers: Unknown arg arm64_32 compilers: Checking arg i386 compilers: Unknown arg i386 compilers: Checking arg x86_64 compilers: Unknown arg x86_64 compilers: Checking arg x86_64h compilers: Unknown arg x86_64h compilers: Checking arg armv6m compilers: Unknown arg armv6m compilers: Checking arg armv7k compilers: Unknown arg armv7k compilers: Checking arg armv7m compilers: Unknown arg armv7m compilers: Checking arg armv7em compilers: Unknown arg armv7em compilers: Checking arg (tvOS) compilers: Unknown arg (tvOS) compilers: Checking arg Library compilers: Unknown arg Library compilers: Checking arg search compilers: Unknown arg search compilers: Checking arg paths: compilers: Unknown arg paths: compilers: Checking arg /Users/kongf/projects/miniconda3/envs/moose-mpich/lib compilers: Unknown arg /Users/kongf/projects/miniconda3/envs/moose-mpich/lib compilers: Checking arg /Users/kongf/projects/miniconda3/envs/moose-mpich/lib compilers: Unknown arg /Users/kongf/projects/miniconda3/envs/moose-mpich/lib compilers: Checking arg /Users/kongf/projects/miniconda3/envs/moose-mpich/lib compilers: Unknown arg /Users/kongf/projects/miniconda3/envs/moose-mpich/lib compilers: Checking arg /Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0 compilers: Unknown arg /Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0 compilers: Checking arg /Users/kongf/projects/miniconda3/envs/moose-mpich/lib compilers: Unknown arg /Users/kongf/projects/miniconda3/envs/moose-mpich/lib compilers: Checking arg /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib compilers: Unknown arg /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib compilers: Checking arg Framework compilers: Unknown arg Framework compilers: Checking arg search compilers: Unknown arg search compilers: Checking arg paths: compilers: Unknown arg paths: compilers: Checking arg /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/ compilers: Unknown arg /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/ compilers: Checking arg /Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0/nm compilers: Unknown arg /Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0/nm compilers: Checking arg -n compilers: Unknown arg -n compilers: Checking arg /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.o compilers: Unknown arg /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.o compilers: Checking arg dsymutil compilers: Unknown arg dsymutil compilers: Checking arg /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest compilers: Unknown arg /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest compilers: Libraries needed to link Fortran code with the C linker: ['-Wl,-rpath,/Users/kongf/projects/miniconda3/envs/moose-mpich/lib', '-L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib', '-lc++', '-ldl', '-lgcc_s.1', '-lmpifort', '-lmpi', '-lpmpi', '-lgfortran', '-Wl,-rpath,/Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0', '-L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0', '-Wl,-rpath,/Users/kongf/projects/miniconda3/envs/moose-mpich/lib', '-lgfortran', '-lquadmath', '-lm'] compilers: Libraries needed to link Fortran main with the C linker: [] compilers: Check that Fortran libraries can be used with C as the linker Linker output before filtering: ld: library not found for -lpetsc-ufod4vtr9mqHvKIQiVAm clang-9: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: ld: library not found for -lpetsc-ufod4vtr9mqHvKIQiVAm clang-9: error: linker command failed with exit code 1 (use -v to see invocation): ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -Wl,-rpath,/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -lc++ -ldl -lgcc_s.1 -lmpifort -lmpi -lpmpi -lgfortran -Wl,-rpath,/Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0 -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0 -Wl,-rpath,/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -lgfortran -lquadmath -lm -lc++ -ldl -lgcc_s.1 ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -Wl,-rpath,/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -lc++ -ldl -lgcc_s.1 -lmpifort -lmpi -lpmpi -lgfortran -Wl,-rpath,/Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0 -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0 -Wl,-rpath,/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -lgfortran -lquadmath -lm -lc++ -ldl -lgcc_s.1 -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lpetsc-ufod4vtr9mqHvKIQiVAm clang-9: error: linker command failed with exit code 1 (use -v to see invocation) ======== Checking running linked program ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -Wl,-rpath,/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -lc++ -ldl -lgcc_s.1 -lmpifort -lmpi -lpmpi -lgfortran -Wl,-rpath,/Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0 -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0 -Wl,-rpath,/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -lgfortran -lquadmath -lm -lc++ -ldl -lgcc_s.1 Testing executable /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest to see if it can be run Executing: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest compilers: Check that Fortran libraries can be used with C++ as linker Linker output before filtering: ld: library not found for -lpetsc-ufod4vtr9mqHvKIQiVAm clang-9: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: ld: library not found for -lpetsc-ufod4vtr9mqHvKIQiVAm clang-9: error: linker command failed with exit code 1 (use -v to see invocation): compilers: Fortran libraries can be used from C++ ===== Checking compiler Executing: mpicxx -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O3 -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ===== Checking linker Executing: mpicxx -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O3 -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicxx -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -Wl,-rpath,/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -lc++ -ldl -lgcc_s.1 -lmpifort -lmpi -lpmpi -lgfortran -Wl,-rpath,/Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0 -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0 -Wl,-rpath,/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -lgfortran -lquadmath -lm -lc++ -ldl -lgcc_s.1 ===== Checking linker Executing: mpicxx -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O3 -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicxx -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -Wl,-rpath,/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -lc++ -ldl -lgcc_s.1 -lmpifort -lmpi -lpmpi -lgfortran -Wl,-rpath,/Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0 -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0 -Wl,-rpath,/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -lgfortran -lquadmath -lm -lc++ -ldl -lgcc_s.1 -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lpetsc-ufod4vtr9mqHvKIQiVAm clang-9: error: linker command failed with exit code 1 (use -v to see invocation) ======== Checking running linked program ===== Checking linker Executing: mpicxx -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O3 -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicxx -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -Wl,-rpath,/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -lc++ -ldl -lgcc_s.1 -lmpifort -lmpi -lpmpi -lgfortran -Wl,-rpath,/Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0 -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0 -Wl,-rpath,/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -lgfortran -lquadmath -lm -lc++ -ldl -lgcc_s.1 Testing executable /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest to see if it can be run Executing: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest ============================================================================================= TESTING: checkFortranLinkingCxx from config.compilers(config/BuildSystem/config/compilers.py:1346) Check that Fortran can link C++ libraries ===== Checking compiler Executing: mpicxx -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O3 -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void foo(void){d1chk_();} ===== Checking compiler Executing: mpicxx -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O3 -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void d1chk_(void){return;} ===== Checking linker Executing: mpif90 -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.F90 Successful compile: Source: program main call d1chk() end Executing: mpif90 -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/conftest.o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/cxxobj.o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers/confc.o -lc++ -ldl -lgcc_s.1 compilers: Fortran can link C++ functions ============================================================================================= TESTING: setupFrameworkCompilers from config.compilers(config/BuildSystem/config/compilers.py:1507) child config.compilers 9.617587 ============================================================================================= TESTING: configureClosure from config.utilities.closure(config/BuildSystem/config/utilities/closure.py:17) Determine if Apple ^close syntax is supported in C ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure/conftest.c:6:7: warning: unused variable 'closure' [-Wunused-variable] int (^closure)(int);; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int (^closure)(int);; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure/conftest.o -lc++ -ldl -lgcc_s.1 Defined "HAVE_CLOSURE" to "1" child config.utilities.closure 0.254202 ============================================================================================= TESTING: checkFortranTypeSizes from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:56) Check whether real*8 is supported and suggest flags which will allow support Executing: mpif90 -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran/conftest.F90:2:21: real*8 variable 1 Warning: Unused variable ‘variable’ declared at (1) [-Wunused-variable] Source: program main real*8 variable end ============================================================================================= TESTING: checkFortranPreprocessor from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:73) Determine if Fortran handles preprocessing properly Executing: mpif90 -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.F90 Successful compile: Source: program main #define dummy dummy #ifndef dummy fooey #endif end Output from compiling with -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O compilers: Fortran uses preprocessor ============================================================================================= TESTING: checkFortranDefineCompilerOption from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:96) Check if -WF,-Dfoobar or -Dfoobar is the compiler option to define a macro Executing: mpif90 -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O -DTesting /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.F90 Successful compile: Source: program main #define dummy dummy #ifndef Testing fooey #endif end Output from compiling with -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O -DTesting Defined make macro "FC_DEFINE_FLAG" to "-D" compilers: Fortran uses -D for defining macro ============================================================================================= TESTING: checkFortran90 from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:146) Determine whether the Fortran compiler handles F90 ===== Checking linker Executing: mpif90 -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran/conftest.F90:3:43: REAL(KIND=SELECTED_REAL_KIND(10)) d 1 Warning: Unused variable ‘d’ declared at (1) [-Wunused-variable] Source: program main REAL(KIND=SELECTED_REAL_KIND(10)) d INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8) INTEGER (KIND=int) :: ierr ierr = 1 end Executing: mpif90 -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran/conftest.o -lc++ -ldl -lgcc_s.1 Fortran compiler supports F90 ============================================================================================= TESTING: checkFortran90FreeForm from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:162) Determine whether the Fortran compiler handles F90FreeForm We also require that the compiler handles lines longer than 132 characters ===== Checking linker Executing: mpif90 -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran/conftest.F90 Successful compile: Source: program main INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8); INTEGER (KIND=int) :: ierr; ierr = 1 end Executing: mpif90 -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran/conftest.o -lc++ -ldl -lgcc_s.1 Defined "USING_F90FREEFORM" to "1" Fortran compiler supports F90FreeForm ============================================================================================= TESTING: checkFortran2003 from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:176) Determine whether the Fortran compiler handles F2003 ===== Checking linker Executing: mpif90 -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran/conftest.F90 Successful compile: Source: module Base_module type, public :: base_type integer :: A contains procedure, public :: Print => BasePrint end type base_type contains subroutine BasePrint(this) class(base_type) :: this end subroutine BasePrint end module Base_module program main use,intrinsic :: iso_c_binding Type(C_Ptr),Dimension(:),Pointer :: CArray character(kind=c_char),pointer :: nullc => null() character(kind=c_char,len=5),dimension(:),pointer::list1 allocate(list1(5)) CArray = (/(c_loc(list1(i)),i=1,5),c_loc(nullc)/) end Executing: mpif90 -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran/conftest.o -lc++ -ldl -lgcc_s.1 Defined "USING_F2003" to "1" Fortran compiler supports F2003 ============================================================================================= TESTING: checkFortran90Array from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:211) Check for F90 array interfaces Executing: uname -s stdout: Darwin ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void f90arraytest_(void* a1, void* a2,void* a3, void* i) { printf("arrays [%p %p %p]\n",a1,a2,a3); fflush(stdout); return; } void f90ptrtest_(void* a1, void* a2,void* a3, void* i, void* p1 ,void* p2, void* p3) { printf("arrays [%p %p %p]\n",a1,a2,a3); if ((p1 == p3) && (p1 != p2)) { printf("pointers match! [%p %p] [%p]\n",p1,p3,p2); fflush(stdout); } else { printf("pointers do not match! [%p %p] [%p]\n",p1,p3,p2); fflush(stdout); exit(111); } return; } ======== Checking running linked program ===== Checking linker Executing: mpif90 -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran/conftest.F90 Successful compile: Source: program main Interface Subroutine f90ptrtest(p1,p2,p3,i) integer, pointer :: p1(:,:) integer, pointer :: p2(:,:) integer, pointer :: p3(:,:) integer i End Subroutine End Interface integer, pointer :: ptr1(:,:),ptr2(:,:) integer, target :: array(6:8,9:21) integer in in = 25 ptr1 => array ptr2 => array call f90arraytest(ptr1,ptr2,ptr1,in) call f90ptrtest(ptr1,ptr2,ptr1,in) end Executing: mpif90 -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran/conftest.o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran/fooobj.o -lc++ -ldl -lgcc_s.1 Testing executable /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran/conftest to see if it can be run Executing: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran/conftest stdout: arrays [0x7ffeefbde560 0x7ffeefbde560 0x7ffeefbde560] arrays [0x7ffeefbde510 0x7ffeefbde4c0 0x7ffeefbde510] pointers do not match! [0x130a8 0x7ffeefbde560] [0x7fffa1018f78] ERROR while running executable: Could not execute "['/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran/conftest']": arrays [0x7ffeefbde560 0x7ffeefbde560 0x7ffeefbde560] arrays [0x7ffeefbde510 0x7ffeefbde4c0 0x7ffeefbde510] pointers do not match! [0x130a8 0x7ffeefbde560] [0x7fffa1018f78] compilers: F90 uses a single argument for array pointers ============================================================================================= TESTING: checkFortran90AssumedType from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:298) Executing: mpif90 -qversion ============================================================================================= TESTING: checkFortranModuleInclude from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:303) Figures out what flag is used to specify the include path for Fortran modules ===== Checking compiler Executing: mpif90 -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran/conftest.F90 Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest ===== Checking linker Executing: mpif90 -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran/confdir -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran/conftest.F90 Successful compile: Source: program main use configtest write(*,*) testint end Executing: mpif90 -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran/confdir -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran/conftest.o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran/configtest.o -lc++ -ldl -lgcc_s.1 compilers: Fortran module include flag -I found ============================================================================================= TESTING: checkFortranModuleOutput from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:369) Figures out what flag is used to specify the output path for Fortran modules ===== Checking compiler Executing: mpif90 -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -module /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran/confdir -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: exit code 1 stderr: x86_64-apple-darwin13.4.0-gfortran: error: unrecognized command line option ‘-module’; did you mean ‘-mhle’? Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -module compile failed ===== Checking compiler Executing: mpif90 -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -module:/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran/confdir -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: exit code 1 stderr: x86_64-apple-darwin13.4.0-gfortran: error: unrecognized command line option ‘-module:/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran/confdir’ Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -module: compile failed ===== Checking compiler Executing: mpif90 -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -fmod=/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran/confdir -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: exit code 1 stderr: x86_64-apple-darwin13.4.0-gfortran: error: unrecognized command line option ‘-fmod=/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran/confdir’ Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -fmod= compile failed ===== Checking compiler Executing: mpif90 -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -J/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran/confdir -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran/conftest.F90 Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -J found ============================================================================================= TESTING: checkFortranTypeStar from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:135) Determine whether the Fortran compiler handles type(*) ===== Checking compiler Executing: mpif90 -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran/conftest.F90 Successful compile: Source: program main interface subroutine a(b) type(*) :: b(:) end subroutine end interface end Defined "HAVE_FORTRAN_TYPE_STAR" to "1" Fortran compiler supports type(*) ============================================================================================= TESTING: checkFortranTypeInitialize from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:125) Determines if PETSc objects in Fortran are initialized by default (doesn't work with common blocks) Defined "FORTRAN_TYPE_INITIALIZE" to " = -2" Initializing Fortran objects ============================================================================================= TESTING: configureFortranFlush from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:116) ===== Checking linker Executing: mpif90 -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran/conftest.F90 Successful compile: Source: program main call flush(6) end Executing: mpif90 -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran/conftest.o -lc++ -ldl -lgcc_s.1 Defined "HAVE_FORTRAN_FLUSH" to "1" ============================================================================================= TESTING: checkDependencyGenerationFlag from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:414) Check if -MMD works for dependency generation, and add it if it does Trying FC compiler flag -MMD -MP Defined make macro "FC_DEPFLAGS" to "-MMD -MP" Executing: mpif90 -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O -MMD -MP /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.F90 Successful compile: Source: program main end Output from compiling with -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O -MMD -MP child config.compilersFortran 2.577338 ============================================================================================= TESTING: checkStdC from config.headers(config/BuildSystem/config/headers.py:105) ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c ======== Checking running linked program ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #define ISLOWER(c) ('a' <= (c) && (c) <= 'z') #define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c)) #define XOR(e, f) (((e) && !(f)) || (!(e) && (f))) int main() { int i; for(i = 0; i < 256; i++) if (XOR(islower(i), ISLOWER(i)) || toupper(i) != TOUPPER(i)) exit(2); exit(0); ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.o -lc++ -ldl -lgcc_s.1 Testing executable /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest to see if it can be run Executing: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest ============================================================================================= TESTING: checkStat from config.headers(config/BuildSystem/config/headers.py:138) Checks whether stat file-mode macros are broken, and defines STAT_MACROS_BROKEN if they are Preprocessing source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(S_ISBLK) && defined(S_IFDIR) # if S_ISBLK (S_IFDIR) You lose. # endif #endif #if defined(S_ISBLK) && defined(S_IFCHR) # if S_ISBLK (S_IFCHR) You lose. # endif #endif #if defined(S_ISLNK) && defined(S_IFREG) # if S_ISLNK (S_IFREG) You lose. # endif #endif #if defined(S_ISSOCK) && defined(S_IFREG) # if S_ISSOCK (S_IFREG) You lose. # endif #endif Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c ============================================================================================= TESTING: checkSysWait from config.headers(config/BuildSystem/config/headers.py:173) Check for POSIX.1 compatible sys/wait.h, and defines HAVE_SYS_WAIT_H if found ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifndef WEXITSTATUS #define WEXITSTATUS(stat_val) ((unsigned)(stat_val) >> 8) #endif #ifndef WIFEXITED #define WIFEXITED(stat_val) (((stat_val) & 255) == 0) #endif int main() { int s; wait (&s); s = WIFEXITED (s) ? WEXITSTATUS (s) : 1; ; return 0; } Defined "HAVE_SYS_WAIT_H" to "1" ============================================================================================= TESTING: checkTime from config.headers(config/BuildSystem/config/headers.py:195) Checks if you can safely include both and , and if so defines TIME_WITH_SYS_TIME Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_TIME_H" to "1" Checking for header: sys/time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_TIME_H" to "1" ============================================================================================= TESTING: checkMath from config.headers(config/BuildSystem/config/headers.py:201) Checks for the math headers and defines Checking for header: math.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:8:8: warning: if statement has empty body [-Wempty-body] if (pi); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:8:8: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { double pi = M_PI; if (pi); ; return 0; } Found math #defines, like M_PI ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SETJMP_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 351 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/confdefs.h" 1 # 2 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conffix.h" 1 # 3 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'dos.h' file not found #include ^~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'dos.h' file not found #include ^~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'dos.h' file not found #include ^~~~~~~ 1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_FCNTL_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_FLOAT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 351 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/confdefs.h" 1 # 2 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conffix.h" 1 # 3 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'io.h' file not found #include ^~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'io.h' file not found #include ^~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'io.h' file not found #include ^~~~~~ 1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 351 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/confdefs.h" 1 # 2 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conffix.h" 1 # 3 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'malloc.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'malloc.h' file not found #include ^~~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'malloc.h' file not found #include ^~~~~~~~~~ 1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_PWD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_STRINGS_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_UNISTD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 351 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/confdefs.h" 1 # 2 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conffix.h" 1 # 3 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'sys/sysinfo.h' file not found #include ^~~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'sys/sysinfo.h' file not found #include ^~~~~~~~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'sys/sysinfo.h' file not found #include ^~~~~~~~~~~~~~~ 1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_MACHINE_ENDIAN_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_PARAM_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 351 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/confdefs.h" 1 # 2 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conffix.h" 1 # 3 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'sys/procfs.h' file not found #include ^~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'sys/procfs.h' file not found #include ^~~~~~~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'sys/procfs.h' file not found #include ^~~~~~~~~~~~~~ 1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_RESOURCE_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 351 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/confdefs.h" 1 # 2 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conffix.h" 1 # 3 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'sys/systeminfo.h' file not found #include ^~~~~~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'sys/systeminfo.h' file not found #include ^~~~~~~~~~~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'sys/systeminfo.h' file not found #include ^~~~~~~~~~~~~~~~~~ 1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_TIMES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_UTSNAME_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_SOCKET_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_WAIT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_NETINET_IN_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_NETDB_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: direct.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 351 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/confdefs.h" 1 # 2 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conffix.h" 1 # 3 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'direct.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'direct.h' file not found #include ^~~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'direct.h' file not found #include ^~~~~~~~~~ 1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_TIME_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 351 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/confdefs.h" 1 # 2 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conffix.h" 1 # 3 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'Ws2tcpip.h' file not found #include ^~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'Ws2tcpip.h' file not found #include ^~~~~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'Ws2tcpip.h' file not found #include ^~~~~~~~~~~~ 1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_TYPES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 351 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/confdefs.h" 1 # 2 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conffix.h" 1 # 3 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'WindowsX.h' file not found #include ^~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'WindowsX.h' file not found #include ^~~~~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'WindowsX.h' file not found #include ^~~~~~~~~~~~ 1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_FLOAT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 351 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/confdefs.h" 1 # 2 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conffix.h" 1 # 3 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'ieeefp.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'ieeefp.h' file not found #include ^~~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'ieeefp.h' file not found #include ^~~~~~~~~~ 1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_STDINT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_PTHREAD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: inttypes.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_INTTYPES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: immintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_IMMINTRIN_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: zmmintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 351 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/confdefs.h" 1 # 2 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conffix.h" 1 # 3 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'zmmintrin.h' file not found #include ^~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'zmmintrin.h' file not found #include ^~~~~~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'zmmintrin.h' file not found #include ^~~~~~~~~~~~~ 1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SETJMP_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 351 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/confdefs.h" 1 # 2 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conffix.h" 1 # 3 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'dos.h' file not found #include ^~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'dos.h' file not found #include ^~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'dos.h' file not found #include ^~~~~~~ 1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_FCNTL_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_FLOAT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 351 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/confdefs.h" 1 # 2 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conffix.h" 1 # 3 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'io.h' file not found #include ^~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'io.h' file not found #include ^~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'io.h' file not found #include ^~~~~~ 1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 351 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/confdefs.h" 1 # 2 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conffix.h" 1 # 3 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'malloc.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'malloc.h' file not found #include ^~~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'malloc.h' file not found #include ^~~~~~~~~~ 1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_PWD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_STRINGS_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_UNISTD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 351 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/confdefs.h" 1 # 2 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conffix.h" 1 # 3 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'sys/sysinfo.h' file not found #include ^~~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'sys/sysinfo.h' file not found #include ^~~~~~~~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'sys/sysinfo.h' file not found #include ^~~~~~~~~~~~~~~ 1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_MACHINE_ENDIAN_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_PARAM_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 351 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/confdefs.h" 1 # 2 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conffix.h" 1 # 3 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'sys/procfs.h' file not found #include ^~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'sys/procfs.h' file not found #include ^~~~~~~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'sys/procfs.h' file not found #include ^~~~~~~~~~~~~~ 1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_RESOURCE_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 351 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/confdefs.h" 1 # 2 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conffix.h" 1 # 3 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'sys/systeminfo.h' file not found #include ^~~~~~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'sys/systeminfo.h' file not found #include ^~~~~~~~~~~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'sys/systeminfo.h' file not found #include ^~~~~~~~~~~~~~~~~~ 1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_TIMES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_UTSNAME_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_SOCKET_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_WAIT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_NETINET_IN_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_NETDB_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: direct.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 351 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/confdefs.h" 1 # 2 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conffix.h" 1 # 3 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'direct.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'direct.h' file not found #include ^~~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'direct.h' file not found #include ^~~~~~~~~~ 1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_TIME_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 351 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/confdefs.h" 1 # 2 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conffix.h" 1 # 3 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'Ws2tcpip.h' file not found #include ^~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'Ws2tcpip.h' file not found #include ^~~~~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'Ws2tcpip.h' file not found #include ^~~~~~~~~~~~ 1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_TYPES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 351 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/confdefs.h" 1 # 2 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conffix.h" 1 # 3 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'WindowsX.h' file not found #include ^~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'WindowsX.h' file not found #include ^~~~~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'WindowsX.h' file not found #include ^~~~~~~~~~~~ 1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_FLOAT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 351 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/confdefs.h" 1 # 2 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conffix.h" 1 # 3 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'ieeefp.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'ieeefp.h' file not found #include ^~~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'ieeefp.h' file not found #include ^~~~~~~~~~ 1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_STDINT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_PTHREAD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: inttypes.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_INTTYPES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: immintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_IMMINTRIN_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: zmmintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 351 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/confdefs.h" 1 # 2 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conffix.h" 1 # 3 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'zmmintrin.h' file not found #include ^~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'zmmintrin.h' file not found #include ^~~~~~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'zmmintrin.h' file not found #include ^~~~~~~~~~~~~ 1 error generated.: ============================================================================================= TESTING: checkRecursiveMacros from config.headers(config/BuildSystem/config/headers.py:216) Checks that the preprocessor allows recursive macros, and if not defines HAVE_BROKEN_RECURSIVE_MACRO ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void a(int i, int j) {} #define a(b) a(b,__LINE__) int main() { a(0); ; return 0; } child config.headers 7.505808 ============================================================================================= TESTING: configureCacheDetails from config.utilities.cacheDetails(config/BuildSystem/config/utilities/cacheDetails.py:78) Try to determine the size and associativity of the cache. ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails/conftest.c:4:60: error: use of undeclared identifier '_SC_LEVEL1_DCACHE_LINESIZE'; did you mean 'getconf_LEVEL1_DCACHE_LINESIZE'? long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } ^~~~~~~~~~~~~~~~~~~~~~~~~~ getconf_LEVEL1_DCACHE_LINESIZE /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails/conftest.c:4:6: note: 'getconf_LEVEL1_DCACHE_LINESIZE' declared here long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } ^ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { ; return 0; } ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val=-1; FILE *f = popen("getconf LEVEL1_DCACHE_LINESIZE","r"); fscanf(f,"%ld",&val); pclose(f); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { ; return 0; } ======== Checking running linked program ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val=-1; FILE *f = popen("getconf LEVEL1_DCACHE_LINESIZE","r"); fscanf(f,"%ld",&val); pclose(f); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_LINESIZE()); fclose(output);; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails/conftest.o -lc++ -ldl -lgcc_s.1 Testing executable /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails/conftest to see if it can be run Executing: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails/conftest Defined "LEVEL1_DCACHE_LINESIZE" to "32" child config.utilities.cacheDetails 0.599466 ============================================================================================= TESTING: check_struct_sigaction from config.types(config/BuildSystem/config/types.py:42) Checks if "struct sigaction" exists in signal.h. This check is for C89 check. Checking for type: struct sigaction ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.c:11:18: warning: unused variable 'a' [-Wunused-variable] struct sigaction a;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { struct sigaction a;; return 0; } struct sigaction found Defined "HAVE_STRUCT_SIGACTION" to "1" ============================================================================================= TESTING: check__int64 from config.types(config/BuildSystem/config/types.py:48) Checks if __int64 exists. This is primarily for windows. Checking for type: __int64 ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.c:11:1: error: unknown type name '__int64'; did you mean '__int64_t'? __int64 a;; ^~~~~~~ __int64_t /Library/Developer/CommandLineTools/SDKs/MacOSX10.14.sdk/usr/include/i386/_types.h:46:33: note: '__int64_t' declared here typedef long long __int64_t; ^ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { __int64 a;; return 0; } __int64 found ============================================================================================= TESTING: checkSizeTypes from config.types(config/BuildSystem/config/types.py:54) Checks for types associated with sizes, such as size_t. Checking for type: size_t ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.c:11:8: warning: unused variable 'a' [-Wunused-variable] size_t a;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { size_t a;; return 0; } size_t found ============================================================================================= TESTING: checkFileTypes from config.types(config/BuildSystem/config/types.py:64) Checks for types associated with files, such as mode_t, off_t, etc. Checking for type: mode_t ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.c:11:8: warning: unused variable 'a' [-Wunused-variable] mode_t a;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { mode_t a;; return 0; } mode_t found Checking for type: off_t ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.c:11:7: warning: unused variable 'a' [-Wunused-variable] off_t a;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { off_t a;; return 0; } off_t found ============================================================================================= TESTING: checkIntegerTypes from config.types(config/BuildSystem/config/types.py:59) Checks for types associated with integers, such as int32_t. Checking for type: int32_t ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.c:11:9: warning: unused variable 'a' [-Wunused-variable] int32_t a;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { int32_t a;; return 0; } int32_t found ============================================================================================= TESTING: checkPID from config.types(config/BuildSystem/config/types.py:70) Checks for pid_t, and defines it if necessary Checking for type: pid_t ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.c:11:7: warning: unused variable 'a' [-Wunused-variable] pid_t a;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { pid_t a;; return 0; } pid_t found ============================================================================================= TESTING: checkUID from config.types(config/BuildSystem/config/types.py:74) Checks for uid_t and gid_t, and defines them if necessary Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.c ============================================================================================= TESTING: checkC99Complex from config.types(config/BuildSystem/config/types.py:81) Check for complex numbers in in C99 std Note that since PETSc source code uses _Complex we test specifically for that, not complex ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.o -lc++ -ldl -lgcc_s.1 Defined "HAVE_C99_COMPLEX" to "1" ============================================================================================= TESTING: checkCxxComplex from config.types(config/BuildSystem/config/types.py:92) Check for complex numbers in namespace std ===== Checking linker Executing: mpicxx -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O3 -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.cc Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.cc:6:22: warning: unused variable 'x' [-Wunused-variable] std::complex x; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { std::complex x; ; return 0; } Executing: mpicxx -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.o -lc++ -ldl -lgcc_s.1 Defined "HAVE_CXX_COMPLEX" to "1" ============================================================================================= TESTING: checkConst from config.types(config/BuildSystem/config/types.py:103) Checks for working const, and if not found defines it to empty string ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.c:24:16: warning: if statement has empty body [-Wempty-body] if (zero.x); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.c:24:16: note: put the semicolon on a separate line to silence this warning /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.c:25:14: warning: if statement has empty body [-Wempty-body] if (x[0]); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.c:25:14: note: put the semicolon on a separate line to silence this warning /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.c:31:14: warning: if statement has empty body [-Wempty-body] if (*s); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.c:31:14: note: put the semicolon on a separate line to silence this warning /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.c:52:15: warning: if statement has empty body [-Wempty-body] if (foo); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.c:52:15: note: put the semicolon on a separate line to silence this warning /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.c:46:20: warning: variable 'b' is uninitialized when used here [-Wuninitialized] struct s *b; b->j = 5; ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.c:46:18: note: initialize the variable 'b' to silence this warning struct s *b; b->j = 5; ^ = 0 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.c:30:8: warning: variable 't' is uninitialized when used here [-Wuninitialized] *t++ = 0; ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.c:27:14: note: initialize the variable 't' to silence this warning char *t; ^ = 0 6 warnings generated. Source: #include "confdefs.h" #include "conffix.h" int main() { /* Ultrix mips cc rejects this. */ typedef int charset[2]; const charset x; /* SunOS 4.1.1 cc rejects this. */ char const *const *ccp; char **p; /* NEC SVR4.0.2 mips cc rejects this. */ struct point {int x, y;}; static struct point const zero = {0,0}; /* AIX XL C 1.02.0.0 rejects this. It does not let you subtract one const X* pointer from another in an arm of an if-expression whose if-part is not a constant expression */ const char *g = "string"; ccp = &g + (g ? g-g : 0); /* HPUX 7.0 cc rejects these. */ ++ccp; p = (char**) ccp; ccp = (char const *const *) p; /* This section avoids unused variable warnings */ if (zero.x); if (x[0]); { /* SCO 3.2v4 cc rejects this. */ char *t; char const *s = 0 ? (char *) 0 : (char const *) 0; *t++ = 0; if (*s); } { /* Someone thinks the Sun supposedly-ANSI compiler will reject this. */ int x[] = {25, 17}; const int *foo = &x[0]; ++foo; } { /* Sun SC1.0 ANSI compiler rejects this -- but not the above. */ typedef const int *iptr; iptr p = 0; ++p; } { /* AIX XL C 1.02.0.0 rejects this saying "k.c", line 2.27: 1506-025 (S) Operand must be a modifiable lvalue. */ struct s { int j; const int *ap[3]; }; struct s *b; b->j = 5; } { /* ULTRIX-32 V3.1 (Rev 9) vcc rejects this */ const int foo = 10; /* Get rid of unused variable warning */ if (foo); } ; return 0; } ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: void * ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(void *)==8)*2-1]; Defined "SIZEOF_VOID_P" to "8" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: short ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(short)==2)*2-1]; Defined "SIZEOF_SHORT" to "2" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: int ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(int)==4)*2-1]; Defined "SIZEOF_INT" to "4" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(long)==8)*2-1]; Defined "SIZEOF_LONG" to "8" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long long ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(long long)==8)*2-1]; Defined "SIZEOF_LONG_LONG" to "8" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: enum ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(enum{ENUM_DUMMY})==4)*2-1]; Defined "SIZEOF_ENUM" to "4" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: size_t ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(size_t)==8)*2-1]; Defined "SIZEOF_SIZE_T" to "8" Defined "USING_64BIT_PTR" to "1" ============================================================================================= TESTING: checkVisibility from config.types(config/BuildSystem/config/types.py:193) ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { __attribute__((visibility ("default"))) int foo(void);; return 0; } Defined "USE_VISIBILITY_C" to "1" ===== Checking compiler Executing: mpicxx -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O3 -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { __attribute__((visibility ("default"))) int foo(void);; return 0; } Defined "USE_VISIBILITY_CXX" to "1" ============================================================================================= TESTING: checkMaxPathLen from config.types(config/BuildSystem/config/types.py:215) Determining PETSC_MAX_PATH_LEN ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(MAXPATHLEN) # define PETSC_MAX_PATH_LEN MAXPATHLEN #elif defined(MAX_PATH) # define PETSC_MAX_PATH_LEN MAX_PATH #elif defined(_MAX_PATH) # define PETSC_MAX_PATH_LEN _MAX_PATH #else # define PETSC_MAX_PATH_LEN 4096 #endif #define xstr(s) str(s) #define str(s) #s char petsc_max_path_len[] = xstr(PETSC_MAX_PATH_LEN); int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(MAXPATHLEN) # define PETSC_MAX_PATH_LEN MAXPATHLEN #elif defined(MAX_PATH) # define PETSC_MAX_PATH_LEN MAX_PATH #elif defined(_MAX_PATH) # define PETSC_MAX_PATH_LEN _MAX_PATH #else # define PETSC_MAX_PATH_LEN 4096 #endif #define xstr(s) str(s) #define str(s) #s char petsc_max_path_len[] = xstr(PETSC_MAX_PATH_LEN); Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types/conftest.c Defined "MAX_PATH_LEN" to "1024" child config.types 4.116396 ============================================================================================= TESTING: configureMemAlign from PETSc.options.memAlign(config/PETSc/options/memAlign.py:29) Choose alignment Defined "MEMALIGN" to "16" Memory alignment is 16 child PETSc.options.memAlign 0.001098 ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -lfpe -lc++ -ldl -lgcc_s.1 Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lfpe clang-9: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: ld: library not found for -lfpe clang-9: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: ld: library not found for -lfpe clang-9: error: linker command failed with exit code 1 (use -v to see invocation): ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -lsocket -lnsl -lc++ -ldl -lgcc_s.1 Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lsocket clang-9: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: ld: library not found for -lsocket clang-9: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: ld: library not found for -lsocket clang-9: error: linker command failed with exit code 1 (use -v to see invocation): ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -lfpe -lc++ -ldl -lgcc_s.1 Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lfpe clang-9: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: ld: library not found for -lfpe clang-9: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: ld: library not found for -lfpe clang-9: error: linker command failed with exit code 1 (use -v to see invocation): ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -lsocket -lnsl -lc++ -ldl -lgcc_s.1 Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lsocket clang-9: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: ld: library not found for -lsocket clang-9: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: ld: library not found for -lsocket clang-9: error: linker command failed with exit code 1 (use -v to see invocation): ============================================================================================= TESTING: checkMath from config.libraries(config/BuildSystem/config/libraries.py:264) Check for sin() in libm, the math library Checking for functions [sin floor log10 pow] in library [''] [] ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include double sin(double); static void _check_sin() { double x,y; scanf("%lf",&x); y = sin(x); printf("%f",y); ; } #include double floor(double); static void _check_floor() { double x,y; scanf("%lf",&x); y = floor(x); printf("%f",y); ; } #include double log10(double); static void _check_log10() { double x,y; scanf("%lf",&x); y = log10(x); printf("%f",y); ; } #include double pow(double, double); static void _check_pow() { double x,y; scanf("%lf",&x); y = pow(x,x); printf("%f",y); ; } int main() { _check_sin(); _check_floor(); _check_log10(); _check_pow();; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -lc++ -ldl -lgcc_s.1 CheckMath: using math library [] ============================================================================================= TESTING: checkMathErf from config.libraries(config/BuildSystem/config/libraries.py:283) Check for erf() in libm, the math library Checking for functions [erf] in library [] [] ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_erf() { double (*checkErf)(double) = erf;double x = 0,y; y = (*checkErf)(x); } int main() { _check_erf();; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -lc++ -ldl -lgcc_s.1 erf() found Defined "HAVE_ERF" to "1" ============================================================================================= TESTING: checkMathTgamma from config.libraries(config/BuildSystem/config/libraries.py:292) Check for tgamma() in libm, the math library Checking for functions [tgamma] in library [] [] ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_tgamma() { double (*checkTgamma)(double) = tgamma;double x = 0,y; y = (*checkTgamma)(x); } int main() { _check_tgamma();; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -lc++ -ldl -lgcc_s.1 tgamma() found Defined "HAVE_TGAMMA" to "1" ============================================================================================= TESTING: checkMathLgamma from config.libraries(config/BuildSystem/config/libraries.py:301) Check for lgamma() in libm, the math library Checking for functions [lgamma] in library [] [] ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include #include static void _check_lgamma() { double (*checkLgamma)(double) = lgamma;double x = 1,y; y = (*checkLgamma)(x);if (y != 0.) abort(); } int main() { _check_lgamma();; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -lc++ -ldl -lgcc_s.1 lgamma() found Defined "HAVE_LGAMMA" to "1" ============================================================================================= TESTING: checkMathFenv from config.libraries(config/BuildSystem/config/libraries.py:314) Checks if can be used with FE_DFL_ENV Checking for functions [fesetenv] in library [] [] ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_fesetenv() { fesetenv(FE_DFL_ENV);; } int main() { _check_fesetenv();; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -lc++ -ldl -lgcc_s.1 Defined "HAVE_FENV_H" to "1" ============================================================================================= TESTING: checkMathLog2 from config.libraries(config/BuildSystem/config/libraries.py:322) Check for log2() in libm, the math library Checking for functions [log2] in library [] [] ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.c:5:81: warning: unused variable 'y' [-Wunused-variable] static void _check_log2() { double (*checkLog2)(double) = log2; double x = 2.5, y = (*checkLog2)(x); } ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_log2() { double (*checkLog2)(double) = log2; double x = 2.5, y = (*checkLog2)(x); } int main() { _check_log2();; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -lc++ -ldl -lgcc_s.1 log2() found Defined "HAVE_LOG2" to "1" ============================================================================================= TESTING: checkRealtime from config.libraries(config/BuildSystem/config/libraries.py:331) Check for presence of clock_gettime() in realtime library (POSIX Realtime extensions) Checking for functions [clock_gettime] in library [''] [] ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_clock_gettime() { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; } int main() { _check_clock_gettime();; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -lc++ -ldl -lgcc_s.1 realtime functions are linked in by default ============================================================================================= TESTING: checkDynamic from config.libraries(config/BuildSystem/config/libraries.py:347) Check for the header and libraries necessary for dynamic library manipulation Checking for functions [dlopen] in library ['dl'] [] ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } int main() { _check_dlopen();; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -ldl -lc++ -ldl -lgcc_s.1 Defined "HAVE_LIBDL" to "1" Checking for header: dlfcn.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_DLFCN_H" to "1" child config.libraries 3.227666 ============================================================================================= TESTING: configureLibraryOptions from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:38) Sets PETSC_USE_DEBUG, PETSC_USE_INFO, PETSC_USE_LOG, PETSC_USE_CTABLE, PETSC_USE_FORTRAN_KERNELS, and PETSC_USE_AVX512_KERNELS Defined "USE_LOG" to "1" Executing: mpicc -qversion Defined "USE_MALLOC_COALESCED" to "1" Defined "USE_INFO" to "1" Defined "USE_CTABLE" to "1" Linker output before filtering: Undefined symbols for architecture x86_64: "_bgl_perfctr_void", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "_bgl_perfctr_void", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation): Linker output before filtering: Undefined symbols for architecture x86_64: "_ADIOI_BGL_Open", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "_ADIOI_BGL_Open", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation): Defined "USE_BACKWARD_LOOP" to "1" **********Checking if running on BGL/IBM detected Checking for functions [bgl_perfctr_void] in library [''] [] ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char bgl_perfctr_void(); static void _check_bgl_perfctr_void() { bgl_perfctr_void(); } int main() { _check_bgl_perfctr_void();; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -lc++ -ldl -lgcc_s.1 Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_bgl_perfctr_void", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [ADIOI_BGL_Open] in library [''] [] ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ADIOI_BGL_Open(); static void _check_ADIOI_BGL_Open() { ADIOI_BGL_Open(); } int main() { _check_ADIOI_BGL_Open();; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -lc++ -ldl -lgcc_s.1 Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_ADIOI_BGL_Open", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation) *********BGL/IBM test failure Defined "USE_AVX512_KERNELS" to "1" Defined "Alignx(a,b)" to " " ============================================================================================= TESTING: configureISColorValueType from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:99) Sets PETSC_IS_COLORING_VALUE_TYPE, PETSC_MPIU_IS_COLORING_VALUE_TYPE, and PETSC_IS_COLORING_MAX as required by ISColoring Defined "MPIU_IS_COLORING_VALUE_TYPE" to "MPI_UNSIGNED_SHORT" Defined "IS_COLORING_MAX" to "USHRT_MAX" Defined "IS_COLORING_VALUE_TYPE" to "short" Defined "IS_COLORING_VALUE_TYPE_F" to "integer2" child PETSc.options.libraryOptions 0.522165 child config.atomics 0.000013 ============================================================================================= TESTING: checkSysinfo from config.functions(config/BuildSystem/config/functions.py:106) Check whether sysinfo takes three arguments, and if it does define HAVE_SYSINFO_3ARG Checking for functions [sysinfo] ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysinfo(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sysinfo) || defined (__stub___sysinfo) sysinfo_will_always_fail_with_ENOSYS(); #else sysinfo(); #endif ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.o -lc++ -ldl -lgcc_s.1 Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_sysinfo", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "_sysinfo", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "_sysinfo", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation): ============================================================================================= TESTING: checkVPrintf from config.functions(config/BuildSystem/config/functions.py:125) Checks whether vprintf requires a char * last argument, and if it does defines HAVE_VPRINTF_CHAR ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vprintf( "%d", Argp ); ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.o -lc++ -ldl -lgcc_s.1 ============================================================================================= TESTING: checkVFPrintf from config.functions(config/BuildSystem/config/functions.py:131) Checks whether vfprintf requires a char * last argument, and if it does defines HAVE_VFPRINTF_CHAR ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vfprintf(stdout, "%d", Argp ); ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.o -lc++ -ldl -lgcc_s.1 ============================================================================================= TESTING: checkVSNPrintf from config.functions(config/BuildSystem/config/functions.py:137) Checks whether vsnprintf requires a char * last argument, and if it does defines HAVE_VSNPRINTF_CHAR ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp;char str[6]; vsnprintf(str,5, "%d", Argp ); ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.o -lc++ -ldl -lgcc_s.1 Defined "HAVE_VSNPRINTF" to "1" ============================================================================================= TESTING: checkNanosleep from config.functions(config/BuildSystem/config/functions.py:167) Check for functional nanosleep() - as time.h behaves differently for different compiler flags - like -std=c89 ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { struct timespec tp; tp.tv_sec = 0; tp.tv_nsec = (long)(1e9); nanosleep(&tp,0); ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.o -lc++ -ldl -lgcc_s.1 Defined "HAVE_NANOSLEEP" to "1" ============================================================================================= TESTING: checkMemmove from config.functions(config/BuildSystem/config/functions.py:173) Check for functional memmove() - as MS VC requires correct includes to for this test ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { char c1[1], c2[1] = "c"; size_t n=1; memmove(c1,c2,n); ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.o -lc++ -ldl -lgcc_s.1 Defined "HAVE_MEMMOVE" to "1" ============================================================================================= TESTING: checkSignalHandlerType from config.functions(config/BuildSystem/config/functions.py:143) Checks the type of C++ signals handlers, and defines SIGNAL_CAST to the correct value ===== Checking linker Executing: mpicxx -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O3 -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include static void myhandler(int sig) {} int main() { signal(SIGFPE,myhandler); ; return 0; } Executing: mpicxx -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.o -lc++ -ldl -lgcc_s.1 Defined "SIGNAL_CAST" to " " ============================================================================================= TESTING: checkFreeReturnType from config.functions(config/BuildSystem/config/functions.py:153) Checks whether free returns void or int, and defines HAVE_FREE_RETURN_INT ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.c:6:25: error: assigning to 'int' from incompatible type 'void' int ierr; void *p; ierr = free(p); return 0; ^ ~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ierr; void *p; ierr = free(p); return 0; ; return 0; } Compile failed inside link ============================================================================================= TESTING: checkVariableArgumentLists from config.functions(config/BuildSystem/config/functions.py:159) Checks whether the variable argument list functionality is working ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { va_list l1, l2; va_copy(l1, l2); return 0; ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.o -lc++ -ldl -lgcc_s.1 Defined "HAVE_VA_COPY" to "1" ============================================================================================= TESTING: checkClassify from config.functions(config/BuildSystem/config/functions.py:85) Recursive decompose to rapidly classify functions as found or missing To confirm that a function is missing, we require a compile/link failure with only that function in a compilation unit. In contrast, we can confirm that many functions are present by compiling them all together in a large compilation unit. We optimistically compile everything together, then trim all functions that were named in the error message and bisect the result. The trimming is only an optimization to increase the likelihood of a big-batch compile succeeding; we do not rely on the compiler naming missing functions. Checking for functions [gethostbyname time gethostname _lseek _sleep strcasecmp readlink _access getwd sleep usleep bzero sbreak dlclose snprintf _snprintf dlopen popen dlsym dlerror _pipe drand48 socket getpagesize fork PXFGETARG rand getrusage _mkdir clock realpath getcwd fpsetsticky memalign uname stricmp _set_output_format getdomainname fpresetsticky lseek access _getcwd] ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.c:18:6: warning: incompatible redeclaration of library function 'strcasecmp' [-Wincompatible-library-redeclaration] char strcasecmp(); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.c:18:6: note: 'strcasecmp' is a builtin with type 'int (const char *, const char *)' /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.c:24:6: warning: incompatible redeclaration of library function 'bzero' [-Wincompatible-library-redeclaration] char bzero(); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.c:24:6: note: 'bzero' is a builtin with type 'void (void *, unsigned long)' /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.c:27:6: warning: incompatible redeclaration of library function 'snprintf' [-Wincompatible-library-redeclaration] char snprintf(); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.c:27:6: note: 'snprintf' is a builtin with type 'int (char *, unsigned long, const char *, ...)' 3 warnings generated. Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char gethostbyname(); char time(); char gethostname(); char _lseek(); char _sleep(); char strcasecmp(); char readlink(); char _access(); char getwd(); char sleep(); char usleep(); char bzero(); char sbreak(); char dlclose(); char snprintf(); char _snprintf(); char dlopen(); char popen(); char dlsym(); char dlerror(); char _pipe(); char drand48(); char socket(); char getpagesize(); char fork(); char PXFGETARG(); char rand(); char getrusage(); char _mkdir(); char clock(); char realpath(); char getcwd(); char fpsetsticky(); char memalign(); char uname(); char stricmp(); char _set_output_format(); char getdomainname(); char fpresetsticky(); char lseek(); char access(); char _getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub__pipe) || defined (__stub____pipe) _pipe_will_always_fail_with_ENOSYS(); #else _pipe(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub__mkdir) || defined (__stub____mkdir) _mkdir_will_always_fail_with_ENOSYS(); #else _mkdir(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif #if defined (__stub_fpsetsticky) || defined (__stub___fpsetsticky) fpsetsticky_will_always_fail_with_ENOSYS(); #else fpsetsticky(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub_fpresetsticky) || defined (__stub___fpresetsticky) fpresetsticky_will_always_fail_with_ENOSYS(); #else fpresetsticky(); #endif #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.o -lc++ -ldl -lgcc_s.1 Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_PXFGETARG", referenced from: _main in conftest.o "__access", referenced from: _main in conftest.o "__getcwd", referenced from: _main in conftest.o "__lseek", referenced from: _main in conftest.o "__mkdir", referenced from: _main in conftest.o "__pipe", referenced from: _main in conftest.o "__set_output_format", referenced from: _main in conftest.o "__sleep", referenced from: _main in conftest.o "__snprintf", referenced from: _main in conftest.o "_fpresetsticky", referenced from: _main in conftest.o "_fpsetsticky", referenced from: _main in conftest.o "_memalign", referenced from: _main in conftest.o "_sbreak", referenced from: _main in conftest.o "_stricmp", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "_PXFGETARG", referenced from: _main in conftest.o "__access", referenced from: _main in conftest.o "__getcwd", referenced from: _main in conftest.o "__lseek", referenced from: _main in conftest.o "__mkdir", referenced from: _main in conftest.o "__pipe", referenced from: _main in conftest.o "__set_output_format", referenced from: _main in conftest.o "__sleep", referenced from: _main in conftest.o "__snprintf", referenced from: _main in conftest.o "_fpresetsticky", referenced from: _main in conftest.o "_fpsetsticky", referenced from: _main in conftest.o "_memalign", referenced from: _main in conftest.o "_sbreak", referenced from: _main in conftest.o "_stricmp", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "_PXFGETARG", referenced from: _main in conftest.o "__access", referenced from: _main in conftest.o "__getcwd", referenced from: _main in conftest.o "__lseek", referenced from: _main in conftest.o "__mkdir", referenced from: _main in conftest.o "__pipe", referenced from: _main in conftest.o "__set_output_format", referenced from: _main in conftest.o "__sleep", referenced from: _main in conftest.o "__snprintf", referenced from: _main in conftest.o "_fpresetsticky", referenced from: _main in conftest.o "_fpsetsticky", referenced from: _main in conftest.o "_memalign", referenced from: _main in conftest.o "_sbreak", referenced from: _main in conftest.o "_stricmp", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation): Checking for functions [gethostbyname time gethostname strcasecmp readlink getwd usleep bzero dlclose dlopen popen] ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.c:16:6: warning: incompatible redeclaration of library function 'strcasecmp' [-Wincompatible-library-redeclaration] char strcasecmp(); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.c:16:6: note: 'strcasecmp' is a builtin with type 'int (const char *, const char *)' /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.c:20:6: warning: incompatible redeclaration of library function 'bzero' [-Wincompatible-library-redeclaration] char bzero(); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.c:20:6: note: 'bzero' is a builtin with type 'void (void *, unsigned long)' 2 warnings generated. Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char gethostbyname(); char time(); char gethostname(); char strcasecmp(); char readlink(); char getwd(); char usleep(); char bzero(); char dlclose(); char dlopen(); char popen(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.o -lc++ -ldl -lgcc_s.1 Defined "HAVE_GETHOSTBYNAME" to "1" Defined "HAVE_TIME" to "1" Defined "HAVE_GETHOSTNAME" to "1" Defined "HAVE_STRCASECMP" to "1" Defined "HAVE_READLINK" to "1" Defined "HAVE_GETWD" to "1" Defined "HAVE_USLEEP" to "1" Defined "HAVE_BZERO" to "1" Defined "HAVE_DLCLOSE" to "1" Defined "HAVE_DLOPEN" to "1" Defined "HAVE_POPEN" to "1" Checking for functions [dlsym dlerror drand48 socket getpagesize fork rand getrusage clock realpath uname getdomainname] ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char dlsym(); char dlerror(); char drand48(); char socket(); char getpagesize(); char fork(); char rand(); char getrusage(); char clock(); char realpath(); char uname(); char getdomainname(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.o -lc++ -ldl -lgcc_s.1 Defined "HAVE_DLSYM" to "1" Defined "HAVE_DLERROR" to "1" Defined "HAVE_DRAND48" to "1" Defined "HAVE_SOCKET" to "1" Defined "HAVE_GETPAGESIZE" to "1" Defined "HAVE_FORK" to "1" Defined "HAVE_RAND" to "1" Defined "HAVE_GETRUSAGE" to "1" Defined "HAVE_CLOCK" to "1" Defined "HAVE_REALPATH" to "1" Defined "HAVE_UNAME" to "1" Defined "HAVE_GETDOMAINNAME" to "1" Checking for functions [_lseek] ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.o -lc++ -ldl -lgcc_s.1 Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__lseek", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "__lseek", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "__lseek", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation): Checking for functions [_sleep] ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.o -lc++ -ldl -lgcc_s.1 Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__sleep", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "__sleep", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "__sleep", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation): Checking for functions [_access] ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.o -lc++ -ldl -lgcc_s.1 Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__access", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "__access", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "__access", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation): Checking for functions [sleep] ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.o -lc++ -ldl -lgcc_s.1 Defined "HAVE_SLEEP" to "1" Checking for functions [sbreak] ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.o -lc++ -ldl -lgcc_s.1 Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_sbreak", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "_sbreak", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "_sbreak", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation): Checking for functions [snprintf] ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.c:13:6: warning: incompatible redeclaration of library function 'snprintf' [-Wincompatible-library-redeclaration] char snprintf(); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.c:13:6: note: 'snprintf' is a builtin with type 'int (char *, unsigned long, const char *, ...)' 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.o -lc++ -ldl -lgcc_s.1 Defined "HAVE_SNPRINTF" to "1" Checking for functions [_snprintf] ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.o -lc++ -ldl -lgcc_s.1 Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__snprintf", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "__snprintf", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "__snprintf", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation): Checking for functions [_pipe] ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _pipe(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__pipe) || defined (__stub____pipe) _pipe_will_always_fail_with_ENOSYS(); #else _pipe(); #endif ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.o -lc++ -ldl -lgcc_s.1 Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__pipe", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "__pipe", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "__pipe", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation): Checking for functions [PXFGETARG] ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.o -lc++ -ldl -lgcc_s.1 Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_PXFGETARG", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "_PXFGETARG", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "_PXFGETARG", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation): Checking for functions [_mkdir] ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _mkdir(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__mkdir) || defined (__stub____mkdir) _mkdir_will_always_fail_with_ENOSYS(); #else _mkdir(); #endif ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.o -lc++ -ldl -lgcc_s.1 Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__mkdir", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "__mkdir", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "__mkdir", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation): Checking for functions [getcwd] ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.o -lc++ -ldl -lgcc_s.1 Defined "HAVE_GETCWD" to "1" Checking for functions [fpsetsticky] ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fpsetsticky(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fpsetsticky) || defined (__stub___fpsetsticky) fpsetsticky_will_always_fail_with_ENOSYS(); #else fpsetsticky(); #endif ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.o -lc++ -ldl -lgcc_s.1 Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_fpsetsticky", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "_fpsetsticky", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "_fpsetsticky", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation): Checking for functions [memalign] ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char memalign(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.o -lc++ -ldl -lgcc_s.1 Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_memalign", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "_memalign", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "_memalign", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation): Checking for functions [stricmp] ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.o -lc++ -ldl -lgcc_s.1 Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_stricmp", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "_stricmp", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "_stricmp", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation): Checking for functions [_set_output_format] ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _set_output_format(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.o -lc++ -ldl -lgcc_s.1 Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__set_output_format", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "__set_output_format", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "__set_output_format", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation): Checking for functions [fpresetsticky] ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fpresetsticky(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fpresetsticky) || defined (__stub___fpresetsticky) fpresetsticky_will_always_fail_with_ENOSYS(); #else fpresetsticky(); #endif ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.o -lc++ -ldl -lgcc_s.1 Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_fpresetsticky", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "_fpresetsticky", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "_fpresetsticky", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation): Checking for functions [lseek] ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.o -lc++ -ldl -lgcc_s.1 Defined "HAVE_LSEEK" to "1" Checking for functions [access] ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.o -lc++ -ldl -lgcc_s.1 Defined "HAVE_ACCESS" to "1" Checking for functions [_getcwd] ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.o -lc++ -ldl -lgcc_s.1 Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__getcwd", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "__getcwd", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "__getcwd", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation): ============================================================================================= TESTING: checkMmap from config.functions(config/BuildSystem/config/functions.py:179) Check for functional mmap() to allocate shared memory and define HAVE_MMAP ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { int fd; fd=open("/tmp/file",O_RDWR); mmap((void*)0,100,PROT_READ|PROT_WRITE,MAP_SHARED,fd,0); ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions/conftest.o -lc++ -ldl -lgcc_s.1 Defined "HAVE_MMAP" to "1" child config.functions 8.115611 ============================================================================================= TESTING: configureMemorySize from config.utilities.getResidentSetSize(config/BuildSystem/config/utilities/getResidentSetSize.py:31) Try to determine how to measure the memory usage ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize/conftest.c:38:18: warning: implicit declaration of function 'getpagesize' is invalid in C99 [-Wimplicit-function-declaration] f2 = getpagesize() * ((double)(temp2.ru_maxrss-temp1.ru_maxrss))/(4.0*ARRAYSIZE); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize/conftest.c:58:2: error: expected '}' } ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize/conftest.c:12:12: note: to match this '{' int main() { ^ 1 warning and 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include #include #include #include int main() { #define ARRAYSIZE 10000000 int i,*m; struct rusage temp1,temp2; double f0,f1,f2; if (getrusage(RUSAGE_SELF,&temp1)) { printf("Error calling getrusage()\n"); return -1; } m = malloc(ARRAYSIZE*sizeof(int)); if (!m) { printf("Error calling malloc()\n"); return -3; } for (i=0; i .90 && f0 < 1.1) { printf("uses bytes in getrusage()\n"); return 1; if (f1 > .90 && f1 < 1.1) { printf("uses 1024 size chunks in getrusage()\n"); return 2; } else if (f2 > .9 && f2 < 1.1) { printf("uses getpagesize() chunks in getrusage()\n"); return 3; } printf("unable to determine if uses bytes, 1024 or getpagesize() chunks in getrusage()\n"); return -2;; return 0; } Compile failed inside link output from getrusage() child config.utilities.getResidentSetSize 0.158630 ============================================================================================= TESTING: configureFortranCommandLine from config.utilities.fortranCommandLine(config/BuildSystem/config/utilities/fortranCommandLine.py:27) Check for the mechanism to retrieve command line arguments in Fortran Checking for functions [] in library [''] [] ===== Checking linker Executing: mpif90 -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.F90 Successful compile: Source: program main integer i character*(80) arg i = command_argument_count() call get_command_argument(i,arg) end Executing: mpif90 -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -lc++ -ldl -lgcc_s.1 Defined "HAVE_FORTRAN_GET_COMMAND_ARGUMENT" to "1" child config.utilities.fortranCommandLine 0.226569 ============================================================================================= TESTING: configureFPTrap from config.utilities.FPTrap(config/BuildSystem/config/utilities/FPTrap.py:27) Checking the handling of floating point traps Checking for header: sigfpe.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 351 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/confdefs.h" 1 # 2 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conffix.h" 1 # 3 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'sigfpe.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'sigfpe.h' file not found #include ^~~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'sigfpe.h' file not found #include ^~~~~~~~~~ 1 error generated.: Checking for header: fpxcp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 351 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/confdefs.h" 1 # 2 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conffix.h" 1 # 3 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'fpxcp.h' file not found #include ^~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'fpxcp.h' file not found #include ^~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'fpxcp.h' file not found #include ^~~~~~~~~ 1 error generated.: Checking for header: floatingpoint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 351 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/confdefs.h" 1 # 2 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conffix.h" 1 # 3 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'floatingpoint.h' file not found #include ^~~~~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'floatingpoint.h' file not found #include ^~~~~~~~~~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'floatingpoint.h' file not found #include ^~~~~~~~~~~~~~~~~ 1 error generated.: child config.utilities.FPTrap 0.238930 ============================================================================================= TESTING: configureFeatureTestMacros from config.utilities.featureTestMacros(config/BuildSystem/config/utilities/featureTestMacros.py:13) Checks if certain feature test macros are support ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros/conftest.c:4:10: fatal error: 'sysctl.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #define _POSIX_C_SOURCE 200112L #include int main() { ; return 0; } ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #include int main() { ; return 0; } Defined "_BSD_SOURCE" to "1" ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _DEFAULT_SOURCE #include int main() { ; return 0; } Defined "_DEFAULT_SOURCE" to "1" ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros/conftest.c:7:1: error: use of undeclared identifier 'cpu_set_t' cpu_set_t mset; ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros/conftest.c:8:1: warning: implicit declaration of function 'CPU_ZERO' is invalid in C99 [-Wimplicit-function-declaration] CPU_ZERO(&mset);; ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros/conftest.c:8:11: error: use of undeclared identifier 'mset' CPU_ZERO(&mset);; ^ 1 warning and 2 errors generated. Source: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include int main() { cpu_set_t mset; CPU_ZERO(&mset);; return 0; } ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros/conftest.c:9:25: warning: if statement has empty body [-Wempty-body] if (dladdr(exit, &info));; ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros/conftest.c:9:25: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include #include int main() { Dl_info info; if (dladdr(exit, &info));; return 0; } Defined "_GNU_SOURCE" to "1" child config.utilities.featureTestMacros 0.747468 ============================================================================================= TESTING: configureMissingUtypeTypedefs from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:55) Checks if u_short is undefined ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c:6:9: warning: unused variable 'foo' [-Wunused-variable] u_short foo; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { u_short foo; ; return 0; } ============================================================================================= TESTING: configureMissingFunctions from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:61) Checks for SOCKETS ============================================================================================= TESTING: configureMissingSignals from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:79) Check for missing signals, and define MISSING_ if necessary ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGABRT; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGALRM; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGBUS; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCHLD; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCONT; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGFPE; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGHUP; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGILL; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGINT; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGKILL; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGPIPE; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGQUIT; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSEGV; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSTOP; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSYS; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTERM; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTRAP; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTSTP; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGURG; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR1; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR2; if (i); ; return 0; } ============================================================================================= TESTING: configureMissingGetdomainnamePrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:96) ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c:25:7: warning: incompatible pointer types initializing 'int (*)(char *, size_t)' (aka 'int (*)(char *, unsigned long)') with an expression of type 'int (char *, int)' [-Wincompatible-pointer-types] int (*getdomainname_ptr)(char*,size_t) = getdomainname; ^ ~~~~~~~~~~~~~ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } ===== Checking linker Executing: mpicxx -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O3 -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.cc Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.cc:25:7: error: cannot initialize a variable of type 'int (*)(char *, size_t)' (aka 'int (*)(char *, unsigned long)') with an lvalue of type 'int (char *, int)': type mismatch at 2nd parameter ('size_t' (aka 'unsigned long') vs 'int') int (*getdomainname_ptr)(char*,size_t) = getdomainname; ^ ~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Compile failed inside link ===== Checking linker Executing: mpicxx -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O3 -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,int) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Executing: mpicxx -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.o -lc++ -ldl -lgcc_s.1 ============================================================================================= TESTING: configureMissingSrandPrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:121) ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #include int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } ===== Checking linker Executing: mpicxx -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O3 -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #include int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Executing: mpicxx -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing/conftest.o -lc++ -ldl -lgcc_s.1 child config.utilities.missing 4.325598 ============================================================================================= TESTING: checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:34) ============================================================================================= TESTING: configureSharedLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:49) Checks whether shared libraries should be used, for which you must - Specify --with-shared-libraries - Have found a working shared linker Defines PETSC_USE_SHARED_LIBRARIES if they are used Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS Defined make rule "shared_arch" with dependencies "shared_darwin" and code [] Defined make macro "SONAME_FUNCTION" to "$(1).$(2).dylib" Defined make macro "SL_LINKER_FUNCTION" to "-dynamiclib -install_name $(call SONAME_FUNCTION,$(1),$(2)) -compatibility_version $(2) -current_version $(3) -single_module -multiply_defined suppress -undefined dynamic_lookup" Defined make macro "BUILDSHAREDLIB" to "yes" Defined "USE_SHARED_LIBRARIES" to "1" ============================================================================================= TESTING: configureDynamicLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:94) Checks whether dynamic loading is available (with dlfcn.h and libdl) Defined "HAVE_DYNAMIC_LIBRARIES" to "1" ============================================================================================= TESTING: configureSerializedFunctions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:100) Defines PETSC_SERIALIZE_FUNCTIONS if they are used Requires shared libraries ============================================================================================= TESTING: checkSymbolResolution from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:109) Checks that dladdr() works ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.sharedLibraries/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.sharedLibraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.sharedLibraries/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.sharedLibraries/conftest.c:10:25: warning: if statement has empty body [-Wempty-body] if (dladdr(exit, &info)); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.sharedLibraries/conftest.c:10:25: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include #include int main() { Dl_info info; if (dladdr(exit, &info)); ; return 0; } Defined "HAVE_DLADDR" to "1" child PETSc.options.sharedLibraries 0.171390 ============================================================================================= TESTING: configureScalarType from PETSc.options.scalarTypes(config/PETSc/options/scalarTypes.py:40) Choose between real and complex numbers Scalar type is real ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.scalarTypes/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.sharedLibraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.scalarTypes/conftest.c:6:21: warning: unused variable 'a' [-Wunused-variable] double b = 2.0; int a = isnormal(b); ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnormal(b); ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.scalarTypes/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.scalarTypes/conftest.o -lc++ -ldl -lgcc_s.1 Defined "HAVE_ISNORMAL" to "1" ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.scalarTypes/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.sharedLibraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.scalarTypes/conftest.c:6:21: warning: unused variable 'a' [-Wunused-variable] double b = 2.0; int a = isnan(b); ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnan(b); ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.scalarTypes/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.scalarTypes/conftest.o -lc++ -ldl -lgcc_s.1 Defined "HAVE_ISNAN" to "1" ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.scalarTypes/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.sharedLibraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.scalarTypes/conftest.c:6:21: warning: unused variable 'a' [-Wunused-variable] double b = 2.0; int a = isinf(b); ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isinf(b); ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.scalarTypes/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.scalarTypes/conftest.o -lc++ -ldl -lgcc_s.1 Defined "HAVE_ISINF" to "1" ============================================================================================= TESTING: configurePrecision from PETSc.options.scalarTypes(config/PETSc/options/scalarTypes.py:81) Set the default real number precision for PETSc objects Checking C compiler works with __float128 Checking for functions [logq] in library ['quadmath'] [] ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.sharedLibraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.c:4:10: fatal error: 'quadmath.h' file not found #include ^~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_logq() { __float128 f; logq(f);; } int main() { _check_logq();; return 0; } Compile failed inside link Defined "USE_REAL_DOUBLE" to "1" Defined make macro "PETSC_SCALAR_SIZE" to "64" Precision is double child PETSc.options.scalarTypes 0.967202 ============================================================================================= TESTING: configureMkdir from config.programs(config/BuildSystem/config/programs.py:22) Make sure we can have mkdir automatically make intermediate directories Checking for program /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/mkdir...not found Checking for program /Users/kongf/projects/miniconda3/condabin/mkdir...not found Checking for program /usr/local/bin/mkdir...not found Checking for program /usr/bin/mkdir...not found Checking for program /bin/mkdir...found Executing: /bin/mkdir -p .conftest/tmp Adding -p flag to /bin/mkdir -p to automatically create directories Defined make macro "MKDIR" to "/bin/mkdir -p" ============================================================================================= TESTING: configureAutoreconf from config.programs(config/BuildSystem/config/programs.py:44) Check for autoreconf Checking for program /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/autoreconf...not found Checking for program /Users/kongf/projects/miniconda3/condabin/autoreconf...not found Checking for program /usr/local/bin/autoreconf...not found Checking for program /usr/bin/autoreconf...not found Checking for program /bin/autoreconf...not found Checking for program /usr/sbin/autoreconf...not found Checking for program /sbin/autoreconf...not found Checking for program /Library/TeX/texbin/autoreconf...not found Checking for program /opt/X11/bin/autoreconf...not found Checking for program /Users/kongf/projects/petsc1/lib/petsc/bin/win32fe/autoreconf...not found Checking for program /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/libtoolize...not found Checking for program /Users/kongf/projects/miniconda3/condabin/libtoolize...not found Checking for program /usr/local/bin/libtoolize...not found Checking for program /usr/bin/libtoolize...not found Checking for program /bin/libtoolize...not found Checking for program /usr/sbin/libtoolize...not found Checking for program /sbin/libtoolize...not found Checking for program /Library/TeX/texbin/libtoolize...not found Checking for program /opt/X11/bin/libtoolize...not found Checking for program /Users/kongf/projects/petsc1/lib/petsc/bin/win32fe/libtoolize...not found Checking for program /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/glibtoolize...not found Checking for program /Users/kongf/projects/miniconda3/condabin/glibtoolize...not found Checking for program /usr/local/bin/glibtoolize...not found Checking for program /usr/bin/glibtoolize...not found Checking for program /bin/glibtoolize...not found Checking for program /usr/sbin/glibtoolize...not found Checking for program /sbin/glibtoolize...not found Checking for program /Library/TeX/texbin/glibtoolize...not found Checking for program /opt/X11/bin/glibtoolize...not found Checking for program /Users/kongf/projects/petsc1/lib/petsc/bin/win32fe/glibtoolize...not found ============================================================================================= TESTING: configurePrograms from config.programs(config/BuildSystem/config/programs.py:71) Check for the programs needed to build and run PETSc Checking for program /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/bash...not found Checking for program /Users/kongf/projects/miniconda3/condabin/bash...not found Checking for program /usr/local/bin/bash...not found Checking for program /usr/bin/bash...not found Checking for program /bin/bash...found Defined make macro "SHELL" to "/bin/bash" Checking for program /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/sed...not found Checking for program /Users/kongf/projects/miniconda3/condabin/sed...not found Checking for program /usr/local/bin/sed...not found Checking for program /usr/bin/sed...found Defined make macro "SED" to "/usr/bin/sed" Executing: /usr/bin/sed -i s/sed/sd/g "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.programs/sed1" Rejected SEDINPLACE cmd: /usr/bin/sed -i Executing: /usr/bin/sed -i "" s/sed/sd/g "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.programs/sed1" Adding SEDINPLACE cmd: /usr/bin/sed -i "" Defined make macro "SEDINPLACE" to "/usr/bin/sed -i """ Checking for program /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/mv...not found Checking for program /Users/kongf/projects/miniconda3/condabin/mv...not found Checking for program /usr/local/bin/mv...not found Checking for program /usr/bin/mv...not found Checking for program /bin/mv...found Defined make macro "MV" to "/bin/mv" Checking for program /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/cp...not found Checking for program /Users/kongf/projects/miniconda3/condabin/cp...not found Checking for program /usr/local/bin/cp...not found Checking for program /usr/bin/cp...not found Checking for program /bin/cp...found Defined make macro "CP" to "/bin/cp" Checking for program /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/grep...not found Checking for program /Users/kongf/projects/miniconda3/condabin/grep...not found Checking for program /usr/local/bin/grep...not found Checking for program /usr/bin/grep...found Defined make macro "GREP" to "/usr/bin/grep" Checking for program /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/rm...not found Checking for program /Users/kongf/projects/miniconda3/condabin/rm...not found Checking for program /usr/local/bin/rm...not found Checking for program /usr/bin/rm...not found Checking for program /bin/rm...found Defined make macro "RM" to "/bin/rm -f" Checking for program /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/diff...not found Checking for program /Users/kongf/projects/miniconda3/condabin/diff...not found Checking for program /usr/local/bin/diff...not found Checking for program /usr/bin/diff...found Executing: "/usr/bin/diff" -w "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.programs/diff1" "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.programs/diff2" Defined make macro "DIFF" to "/usr/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /Users/kongf/projects/petsc1/lib/petsc/bin/win32fe/ps...not found Unable to find programs ['ps'] providing listing of the specific search path Warning accessing /usr/ucb gives errors: can only concatenate str (not "builtin_function_or_method") to str Warning accessing /usr/usb gives errors: can only concatenate str (not "builtin_function_or_method") to str Defined make macro "PYTHON" to "/Users/kongf/projects/miniconda3/envs/moose-mpich/bin/python3" Checking for program /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/m4...not found Checking for program /Users/kongf/projects/miniconda3/condabin/m4...not found Checking for program /usr/local/bin/m4...not found Checking for program /usr/bin/m4...found Defined make macro "M4" to "/usr/bin/m4" child config.programs 0.044244 ============================================================================================= TESTING: consistencyChecks from config.packages.make(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.make(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default ============================================================================================= TESTING: configureMake from config.packages.make(config/BuildSystem/config/packages/make.py:96) Check Guesses for GNU make Executing: gmake --version GNUMake check failed: Could not execute "['gmake --version']": /bin/sh: gmake: command not found Executing: make --version stdout: GNU Make 3.81 Copyright (C) 2006 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. This program built for i386-apple-darwin11.3.0 Checking for program /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/make...not found Checking for program /Users/kongf/projects/miniconda3/condabin/make...not found Checking for program /usr/local/bin/make...not found Checking for program /usr/bin/make...found Defined make macro "MAKE" to "/usr/bin/make" Checking for program /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/make...not found Checking for program /Users/kongf/projects/miniconda3/condabin/make...not found Checking for program /usr/local/bin/make...not found Checking for program /usr/bin/make...found Defined make macro "MAKE_USER" to "make" ============================================================================================= ***** WARNING: You have a version of GNU make older than 4.0. It will work, but may not support all the parallel testing options. You can install the latest GNU make with your package manager, such as brew or macports, or use the --download-make option to get the latest GNU make ***** ============================================================================================= ============================================================================================= TESTING: setupGNUMake from config.packages.make(config/BuildSystem/config/packages/make.py:150) Setup other GNU make stuff Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC})" and code [] Defined make rule "libcxx" with dependencies "${LIBNAME}(${OBJSCXX})" and code [] Defined make rule "libcu" with dependencies "${LIBNAME}(${OBJSCU})" and code [] Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} Defined make macro "OMAKE_PRINTDIR " to "/usr/bin/make --print-directory" Defined make macro "OMAKE" to "/usr/bin/make --no-print-directory" Defined make macro "MAKE_PAR_OUT_FLG" to "" ============================================================================================= TESTING: configureMakeNP from config.packages.make(config/BuildSystem/config/packages/make.py:197) check no of cores on the build machine [perhaps to do make '-j ncores'] module multiprocessing found 8 cores: using make_np = 7 Defined make macro "MAKE_NP" to "7" Defined make macro "MAKE_TEST_NP" to "4" Defined make macro "MAKE_LOAD" to "12.0" Defined make macro "NPMAX" to "8" child config.packages.make 0.045577 ============================================================================================= TESTING: consistencyChecks from config.packages.X(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.X(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.X(config/BuildSystem/config/package.py:897) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional X Checking for library in Compiler specific search X: [] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Linker output before filtering: Undefined symbols for architecture x86_64: "_XSetWMName", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "_XSetWMName", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation): Checking for functions [XSetWMName] in library [] [] ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.sharedLibraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char XSetWMName(); static void _check_XSetWMName() { XSetWMName(); } int main() { _check_XSetWMName();; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -lc++ -ldl -lgcc_s.1 Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_XSetWMName", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation) Checking for library in Compiler specific search X: ['libX11.a'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Linker output before filtering: ld: library not found for -lX11 clang-9: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: ld: library not found for -lX11 clang-9: error: linker command failed with exit code 1 (use -v to see invocation): Checking for functions [XSetWMName] in library ['libX11.a'] [] ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.sharedLibraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char XSetWMName(); static void _check_XSetWMName() { XSetWMName(); } int main() { _check_XSetWMName();; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -lX11 -lc++ -ldl -lgcc_s.1 Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lX11 clang-9: error: linker command failed with exit code 1 (use -v to see invocation) Checking for library in Package specific search directory X: ['/opt/X11/lib/libX11.a'] Contents: ['bin', 'libexec', 'include', 'etc', 'var', 'lib', 'share'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [XSetWMName] in library ['/opt/X11/lib/libX11.a'] [] ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.sharedLibraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char XSetWMName(); static void _check_XSetWMName() { XSetWMName(); } int main() { _check_XSetWMName();; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -Wl,-rpath,/opt/X11/lib -L/opt/X11/lib -lX11 -lc++ -ldl -lgcc_s.1 Defined "HAVE_LIBX11" to "1" Checking for optional headers [] in Package specific search directory X: ['/opt/X11/include', '/Users/kongf/projects/miniconda3/envs/moose-mpich/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/opt/X11/include', '/Users/kongf/projects/miniconda3/envs/moose-mpich/include'] Found header files [] in ['/opt/X11/include', '/Users/kongf/projects/miniconda3/envs/moose-mpich/include'] Checking for headers ['X11/Xlib.h'] in Package specific search directory X: ['/opt/X11/include', '/Users/kongf/projects/miniconda3/envs/moose-mpich/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['X11/Xlib.h'] in ['/opt/X11/include', '/Users/kongf/projects/miniconda3/envs/moose-mpich/include'] Checking include with compiler flags var CPPFLAGS ['/opt/X11/include', '/Users/kongf/projects/miniconda3/envs/moose-mpich/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/opt/X11/include -I/Users/kongf/projects/miniconda3/envs/moose-mpich/include /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Found header files ['X11/Xlib.h'] in ['/opt/X11/include', '/Users/kongf/projects/miniconda3/envs/moose-mpich/include'] ============================================================================================= TESTING: checkVersion from config.packages.X(config/BuildSystem/config/package.py:1026) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version For x unable to run preprocessor to obtain version information, skipping version check ============================================================================================= TESTING: checkSharedLibrary from config.packages.X(config/BuildSystem/config/package.py:955) By default we don't care about checking if the library is shared child config.packages.X 0.844756 ============================================================================================= TESTING: consistencyChecks from config.packages.hwloc(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.hwloc(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.hwloc 0.001575 ============================================================================================= TESTING: consistencyChecks from config.packages.valgrind(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: configureLibrary from config.packages.valgrind(config/BuildSystem/config/package.py:897) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional valgrind Not checking for library in Compiler specific search VALGRIND: [] because no functions given to check for ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for optional headers [] in Compiler specific search VALGRIND: ['/Users/kongf/projects/miniconda3/envs/moose-mpich/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/Users/kongf/projects/miniconda3/envs/moose-mpich/include'] Found header files [] in ['/Users/kongf/projects/miniconda3/envs/moose-mpich/include'] Checking for headers ['valgrind/valgrind.h'] in Compiler specific search VALGRIND: ['/Users/kongf/projects/miniconda3/envs/moose-mpich/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in ['/Users/kongf/projects/miniconda3/envs/moose-mpich/include'] Checking include with compiler flags var CPPFLAGS ['/Users/kongf/projects/miniconda3/envs/moose-mpich/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/Users/kongf/projects/miniconda3/envs/moose-mpich/include /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 351 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/confdefs.h" 1 # 2 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conffix.h" 1 # 3 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'valgrind/valgrind.h' file not found #include ^~~~~~~~~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'valgrind/valgrind.h' file not found #include ^~~~~~~~~~~~~~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'valgrind/valgrind.h' file not found #include ^~~~~~~~~~~~~~~~~~~~~ 1 error generated.: Not checking for library in Package specific search directory VALGRIND: [] because no functions given to check for ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for optional headers [] in Package specific search directory VALGRIND: ['/usr/local/include', '/Users/kongf/projects/miniconda3/envs/moose-mpich/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/usr/local/include', '/Users/kongf/projects/miniconda3/envs/moose-mpich/include'] Found header files [] in ['/usr/local/include', '/Users/kongf/projects/miniconda3/envs/moose-mpich/include'] Checking for headers ['valgrind/valgrind.h'] in Package specific search directory VALGRIND: ['/usr/local/include', '/Users/kongf/projects/miniconda3/envs/moose-mpich/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in ['/usr/local/include', '/Users/kongf/projects/miniconda3/envs/moose-mpich/include'] Checking include with compiler flags var CPPFLAGS ['/usr/local/include', '/Users/kongf/projects/miniconda3/envs/moose-mpich/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/usr/local/include -I/Users/kongf/projects/miniconda3/envs/moose-mpich/include /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 351 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/confdefs.h" 1 # 2 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 # 1 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conffix.h" 1 # 3 "/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c" 2 stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'valgrind/valgrind.h' file not found #include ^~~~~~~~~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess output before filtering: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'valgrind/valgrind.h' file not found #include ^~~~~~~~~~~~~~~~~~~~~ 1 error generated. : Preprocess output after filtering: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c:3:10: fatal error: 'valgrind/valgrind.h' file not found #include ^~~~~~~~~~~~~~~~~~~~~ 1 error generated.: VALGRIND: DirPath not found.. skipping: /usr/local/lib64 VALGRIND: SearchDir DirPath not found.. skipping: /opt/local Executing: uname -s stdout: Darwin child config.packages.valgrind 0.157606 ============================================================================================= TESTING: consistencyChecks from config.packages.thrust(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.thrust(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.thrust 0.001467 ============================================================================================= TESTING: consistencyChecks from config.packages.cuda(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.cuda(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.cuda 0.000818 ============================================================================================= TESTING: consistencyChecks from config.packages.OpenMPI(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.OpenMPI(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.OpenMPI 0.000891 ============================================================================================= TESTING: consistencyChecks from config.packages.MPICH(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.MPICH(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.MPICH 0.001093 ============================================================================================= TESTING: consistencyChecks from config.packages.MPI(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.MPI(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:697) ================================================================================== Checking for a functional MPI Checking for library in Compiler specific search MPI: [] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library [] [] ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.sharedLibraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -lc++ -ldl -lgcc_s.1 Checking for optional headers [] in Compiler specific search MPI: ['/Users/kongf/projects/miniconda3/envs/moose-mpich/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/Users/kongf/projects/miniconda3/envs/moose-mpich/include'] Found header files [] in ['/Users/kongf/projects/miniconda3/envs/moose-mpich/include'] Checking for headers ['mpi.h'] in Compiler specific search MPI: ['/Users/kongf/projects/miniconda3/envs/moose-mpich/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['mpi.h'] in ['/Users/kongf/projects/miniconda3/envs/moose-mpich/include'] Checking include with compiler flags var CPPFLAGS ['/Users/kongf/projects/miniconda3/envs/moose-mpich/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/Users/kongf/projects/miniconda3/envs/moose-mpich/include /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Found header files ['mpi.h'] in ['/Users/kongf/projects/miniconda3/envs/moose-mpich/include'] Defined "HAVE_MPI_F90MODULE_VISIBILITY" to "1" ============================================================================================= TESTING: checkMPIDistro from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:550) Determine if MPICH_NUMVERSION, OMPI_MAJOR_VERSION or MSMPI_VER exist in mpi.h Used for consistency checking of MPI installation at compile time ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.sharedLibraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.scalarTypes -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:4:25: error: use of undeclared identifier 'I_MPI_VERSION' const char *mpich_ver = I_MPI_VERSION; ^ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include const char *mpich_ver = I_MPI_VERSION; int main() { ; return 0; } ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.sharedLibraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.scalarTypes -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:4:17: error: use of undeclared identifier 'I_MPI_NUMVERSION' int mpich_ver = I_MPI_NUMVERSION; ^ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = I_MPI_NUMVERSION; int main() { ; return 0; } ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.sharedLibraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.scalarTypes -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:4:17: error: use of undeclared identifier 'MVAPICH2_NUMVERSION' int mpich_ver = MVAPICH2_NUMVERSION; ^ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MVAPICH2_NUMVERSION; int main() { ; return 0; } ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.sharedLibraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.scalarTypes -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MPICH_NUMVERSION; int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MPICH_NUMVERSION; Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c Defined "HAVE_MPICH_NUMVERSION" to "30302300" Executing: uname -s stdout: Darwin ============================================================================================= TESTING: configureMPI2 from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:332) Check for functions added to the interface in MPI-2 ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.sharedLibraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.scalarTypes -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:6:35: warning: if statement has empty body [-Wempty-body] int flag;if (MPI_Finalized(&flag)); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:6:35: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int flag;if (MPI_Finalized(&flag)); ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.o -lc++ -ldl -lgcc_s.1 Defined "HAVE_MPI_FINALIZED" to "1" ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.sharedLibraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.scalarTypes -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:6:71: warning: if statement has empty body [-Wempty-body] if (MPI_Allreduce(MPI_IN_PLACE,0, 1, MPI_INT, MPI_SUM, MPI_COMM_SELF)); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:6:71: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Allreduce(MPI_IN_PLACE,0, 1, MPI_INT, MPI_SUM, MPI_COMM_SELF)); ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.o -lc++ -ldl -lgcc_s.1 Defined "HAVE_MPI_IN_PLACE" to "1" ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.sharedLibraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.scalarTypes -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:7:121: warning: if statement has empty body [-Wempty-body] if (MPI_Type_create_struct(count, blocklens, indices, old_types, newtype)); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:7:121: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int count=2; int blocklens[2]={0,1}; MPI_Aint indices[2]={0,1}; MPI_Datatype old_types[2]={MPI_INT,MPI_DOUBLE}; MPI_Datatype *newtype = 0; if (MPI_Type_create_struct(count, blocklens, indices, old_types, newtype)); ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.o -lc++ -ldl -lgcc_s.1 ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.sharedLibraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.scalarTypes -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:6:131: warning: if statement has empty body [-Wempty-body] MPI_Comm_errhandler_fn * p_err_fun = 0; MPI_Errhandler * p_errhandler = 0; if (MPI_Comm_create_errhandler(p_err_fun,p_errhandler)); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:6:131: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm_errhandler_fn * p_err_fun = 0; MPI_Errhandler * p_errhandler = 0; if (MPI_Comm_create_errhandler(p_err_fun,p_errhandler)); ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.o -lc++ -ldl -lgcc_s.1 ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.sharedLibraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.scalarTypes -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:6:63: warning: if statement has empty body [-Wempty-body] if (MPI_Comm_set_errhandler(MPI_COMM_WORLD,MPI_ERRORS_RETURN)); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:6:63: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_set_errhandler(MPI_COMM_WORLD,MPI_ERRORS_RETURN)); ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.o -lc++ -ldl -lgcc_s.1 ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.sharedLibraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.scalarTypes -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:6:49: warning: if statement has empty body [-Wempty-body] if (MPI_Reduce_local(0, 0, 0, MPI_INT, MPI_SUM));; ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:6:49: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Reduce_local(0, 0, 0, MPI_INT, MPI_SUM));; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.o -lc++ -ldl -lgcc_s.1 Defined "HAVE_MPI_REDUCE_LOCAL" to "1" ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.sharedLibraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.scalarTypes -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:6:102: warning: if statement has empty body [-Wempty-body] char version[MPI_MAX_LIBRARY_VERSION_STRING];int verlen;if (MPI_Get_library_version(version,&verlen)); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:6:102: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { char version[MPI_MAX_LIBRARY_VERSION_STRING];int verlen;if (MPI_Get_library_version(version,&verlen)); ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.o -lc++ -ldl -lgcc_s.1 Defined "HAVE_MPI_GET_LIBRARY_VERSION" to "1" ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.sharedLibraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.scalarTypes -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:6:94: warning: if statement has empty body [-Wempty-body] int base[100]; MPI_Win win; if (MPI_Win_create(base,100,4,MPI_INFO_NULL,MPI_COMM_WORLD,&win)); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:6:94: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int base[100]; MPI_Win win; if (MPI_Win_create(base,100,4,MPI_INFO_NULL,MPI_COMM_WORLD,&win)); ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.o -lc++ -ldl -lgcc_s.1 Defined "HAVE_MPI_WIN_CREATE" to "1" ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.sharedLibraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.scalarTypes -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:6:90: warning: if statement has empty body [-Wempty-body] int ptr[1]; MPI_Win win; if (MPI_Accumulate(ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_REPLACE,win)); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:6:90: note: put the semicolon on a separate line to silence this warning /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:6:85: warning: variable 'win' is uninitialized when used here [-Wuninitialized] int ptr[1]; MPI_Win win; if (MPI_Accumulate(ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_REPLACE,win)); ^~~ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:6:24: note: initialize the variable 'win' to silence this warning int ptr[1]; MPI_Win win; if (MPI_Accumulate(ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_REPLACE,win)); ^ = 0 2 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ptr[1]; MPI_Win win; if (MPI_Accumulate(ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_REPLACE,win)); ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.o -lc++ -ldl -lgcc_s.1 Defined "HAVE_MPI_ONE_SIDED" to "1" ============================================================================================= TESTING: configureMPI3 from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:379) Check for functions added to the interface in MPI-3 ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.sharedLibraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.scalarTypes -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:7:112: warning: if statement has empty body [-Wempty-body] if (MPI_Comm_split_type(MPI_COMM_WORLD, MPI_COMM_TYPE_SHARED, 0, MPI_INFO_NULL, &scomm)); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:7:112: note: put the semicolon on a separate line to silence this warning /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:8:111: warning: if statement has empty body [-Wempty-body] if (MPI_Win_allocate_shared(size,disp_unit,MPI_INFO_NULL,MPI_COMM_WORLD,&baseptr,&win)); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:8:111: note: put the semicolon on a separate line to silence this warning /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:9:82: warning: if statement has empty body [-Wempty-body] if (MPI_Win_shared_query(win,0,&size,&disp_unit,&baseptr)); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:9:82: note: put the semicolon on a separate line to silence this warning 3 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm scomm; MPI_Aint size=128; int disp_unit=8,*baseptr; MPI_Win win; if (MPI_Comm_split_type(MPI_COMM_WORLD, MPI_COMM_TYPE_SHARED, 0, MPI_INFO_NULL, &scomm)); if (MPI_Win_allocate_shared(size,disp_unit,MPI_INFO_NULL,MPI_COMM_WORLD,&baseptr,&win)); if (MPI_Win_shared_query(win,0,&size,&disp_unit,&baseptr)); ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.o -lc++ -ldl -lgcc_s.1 Defined "HAVE_MPI_PROCESS_SHARED_MEMORY" to "1" ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.sharedLibraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.scalarTypes -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:7:104: warning: if statement has empty body [-Wempty-body] if (MPI_Win_allocate(size,disp_unit,MPI_INFO_NULL,MPI_COMM_WORLD,&baseptr,&win)); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:7:104: note: put the semicolon on a separate line to silence this warning /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:8:61: warning: if statement has empty body [-Wempty-body] if (MPI_Win_attach(win,baseptr,size)); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:8:61: note: put the semicolon on a separate line to silence this warning /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:9:86: warning: if statement has empty body [-Wempty-body] if (MPI_Win_create_dynamic(MPI_INFO_NULL,MPI_COMM_WORLD,&win)); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:9:86: note: put the semicolon on a separate line to silence this warning 3 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Aint size=128; int disp_unit=8,*baseptr; MPI_Win win; if (MPI_Win_allocate(size,disp_unit,MPI_INFO_NULL,MPI_COMM_WORLD,&baseptr,&win)); if (MPI_Win_attach(win,baseptr,size)); if (MPI_Win_create_dynamic(MPI_INFO_NULL,MPI_COMM_WORLD,&win)); ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.o -lc++ -ldl -lgcc_s.1 Defined "HAVE_MPI_FEATURE_DYNAMIC_WINDOW" to "1" ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.sharedLibraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.scalarTypes -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:7:96: warning: if statement has empty body [-Wempty-body] if (MPI_Iscatter(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:7:96: note: put the semicolon on a separate line to silence this warning /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:8:110: warning: if statement has empty body [-Wempty-body] if (MPI_Iscatterv(&send,counts,displs,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:8:110: note: put the semicolon on a separate line to silence this warning /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:9:96: warning: if statement has empty body [-Wempty-body] if (MPI_Igather(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:9:96: note: put the semicolon on a separate line to silence this warning /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:10:109: warning: if statement has empty body [-Wempty-body] if (MPI_Igatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,0,MPI_COMM_WORLD,&req)); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:10:109: note: put the semicolon on a separate line to silence this warning /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:11:97: warning: if statement has empty body [-Wempty-body] if (MPI_Iallgather(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:11:97: note: put the semicolon on a separate line to silence this warning /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:12:110: warning: if statement has empty body [-Wempty-body] if (MPI_Iallgatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,MPI_COMM_WORLD,&req)); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:12:110: note: put the semicolon on a separate line to silence this warning /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:13:96: warning: if statement has empty body [-Wempty-body] if (MPI_Ialltoall(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:13:96: note: put the semicolon on a separate line to silence this warning 7 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int send=0,recv,counts[2]={1,1},displs[2]={1,2}; MPI_Request req; if (MPI_Iscatter(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Iscatterv(&send,counts,displs,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Igather(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Igatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Iallgather(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); if (MPI_Iallgatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,MPI_COMM_WORLD,&req)); if (MPI_Ialltoall(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.o -lc++ -ldl -lgcc_s.1 Defined "HAVE_MPI_NONBLOCKING_COLLECTIVES" to "1" ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.sharedLibraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.scalarTypes -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:8:145: warning: if statement has empty body [-Wempty-body] if (MPI_Dist_graph_create_adjacent(MPI_COMM_WORLD,0,0,MPI_WEIGHTS_EMPTY,0,0,MPI_WEIGHTS_EMPTY,MPI_INFO_NULL,0,&distcomm)); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:8:145: note: put the semicolon on a separate line to silence this warning /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:9:89: warning: if statement has empty body [-Wempty-body] if (MPI_Neighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm)); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:9:89: note: put the semicolon on a separate line to silence this warning /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:10:95: warning: if statement has empty body [-Wempty-body] if (MPI_Ineighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm,&req)); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:10:95: note: put the semicolon on a separate line to silence this warning 3 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm distcomm; MPI_Request req; if (MPI_Dist_graph_create_adjacent(MPI_COMM_WORLD,0,0,MPI_WEIGHTS_EMPTY,0,0,MPI_WEIGHTS_EMPTY,MPI_INFO_NULL,0,&distcomm)); if (MPI_Neighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm)); if (MPI_Ineighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm,&req)); ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.o -lc++ -ldl -lgcc_s.1 Defined "HAVE_MPI_NEIGHBORHOOD_COLLECTIVES" to "1" ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.sharedLibraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.scalarTypes -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:6:104: warning: if statement has empty body [-Wempty-body] int ptr[1]; MPI_Win win; if (MPI_Get_accumulate(ptr,1,MPI_INT,ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_SUM,win)); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:6:104: note: put the semicolon on a separate line to silence this warning /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:6:99: warning: variable 'win' is uninitialized when used here [-Wuninitialized] int ptr[1]; MPI_Win win; if (MPI_Get_accumulate(ptr,1,MPI_INT,ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_SUM,win)); ^~~ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:6:24: note: initialize the variable 'win' to silence this warning int ptr[1]; MPI_Win win; if (MPI_Get_accumulate(ptr,1,MPI_INT,ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_SUM,win)); ^ = 0 2 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ptr[1]; MPI_Win win; if (MPI_Get_accumulate(ptr,1,MPI_INT,ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_SUM,win)); ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.o -lc++ -ldl -lgcc_s.1 Defined "HAVE_MPI_GET_ACCUMULATE" to "1" ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.sharedLibraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.scalarTypes -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:6:94: warning: if statement has empty body [-Wempty-body] int ptr[1]; MPI_Win win; MPI_Request req; if (MPI_Rget(ptr,1,MPI_INT,0,1,1,MPI_INT,win,&req)); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:6:94: note: put the semicolon on a separate line to silence this warning /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:6:84: warning: variable 'win' is uninitialized when used here [-Wuninitialized] int ptr[1]; MPI_Win win; MPI_Request req; if (MPI_Rget(ptr,1,MPI_INT,0,1,1,MPI_INT,win,&req)); ^~~ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:6:24: note: initialize the variable 'win' to silence this warning int ptr[1]; MPI_Win win; MPI_Request req; if (MPI_Rget(ptr,1,MPI_INT,0,1,1,MPI_INT,win,&req)); ^ = 0 2 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ptr[1]; MPI_Win win; MPI_Request req; if (MPI_Rget(ptr,1,MPI_INT,0,1,1,MPI_INT,win,&req)); ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.o -lc++ -ldl -lgcc_s.1 Defined "HAVE_MPI_RGET" to "1" ============================================================================================= TESTING: configureMPIEXEC from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:177) Checking for location of mpiexec Checking for program /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/mpiexec...found Checking for program /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/mpiexec...found Defined make macro "MPIEXECEXECUTABLE" to "/Users/kongf/projects/miniconda3/envs/moose-mpich/bin/mpiexec" Running Executable with threads to time it out at 120 Executing: mpiexec -n 1 printenv stdout: AS=/Users/kongf/projects/miniconda3/envs/moose-mpich/bin/x86_64-apple-darwin13.4.0-as MOOSE_NO_CODESIGN=true CODESIGN_ALLOCATE=/Users/kongf/projects/miniconda3/envs/moose-mpich/bin/x86_64-apple-darwin13.4.0-codesign_allocate TERM_PROGRAM=Apple_Terminal CCACHE_SLOPPINESS=time_macros HOST=x86_64-apple-darwin13.4.0 TERM=xterm-256color SHELL=/bin/bash NM=/Users/kongf/projects/miniconda3/envs/moose-mpich/bin/x86_64-apple-darwin13.4.0-nm TMPDIR=/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/ PAGESTUFF=/Users/kongf/projects/miniconda3/envs/moose-mpich/bin/x86_64-apple-darwin13.4.0-pagestuff CONDA_SHLVL=2 Apple_PubSub_Socket_Render=/private/tmp/com.apple.launchd.Vqq9bOnR0P/Render LIPO=/Users/kongf/projects/miniconda3/envs/moose-mpich/bin/x86_64-apple-darwin13.4.0-lipo CONDA_PROMPT_MODIFIER=(moose-mpich) TERM_PROGRAM_VERSION=421.2 SIZE=/Users/kongf/projects/miniconda3/envs/moose-mpich/bin/x86_64-apple-darwin13.4.0-size NMEDIT=/Users/kongf/projects/miniconda3/envs/moose-mpich/bin/x86_64-apple-darwin13.4.0-nmedit TERM_SESSION_ID=2D63DB8D-112D-4430-A8C6-80891C819720 INSTALL_NAME_TOOL=/Users/kongf/projects/miniconda3/envs/moose-mpich/bin/x86_64-apple-darwin13.4.0-install_name_tool SEGEDIT=/Users/kongf/projects/miniconda3/envs/moose-mpich/bin/x86_64-apple-darwin13.4.0-segedit GFORTRAN=/Users/kongf/projects/miniconda3/envs/moose-mpich/bin/x86_64-apple-darwin13.4.0-gfortran SEG_HACK=/Users/kongf/projects/miniconda3/envs/moose-mpich/bin/x86_64-apple-darwin13.4.0-seg_hack USER=kongf CLANGXX=/Users/kongf/projects/miniconda3/envs/moose-mpich/bin/x86_64-apple-darwin13.4.0-clang++ LIBTOOL=/Users/kongf/projects/miniconda3/envs/moose-mpich/bin/x86_64-apple-darwin13.4.0-libtool CONDA_BACKUP_HOST=x86_64-apple-darwin13.4.0 CONDA_EXE=/Users/kongf/projects/miniconda3/bin/conda OTOOL=/Users/kongf/projects/miniconda3/envs/moose-mpich/bin/x86_64-apple-darwin13.4.0-otool SSH_AUTH_SOCK=/private/tmp/com.apple.launchd.dhkB9eJHOL/Listeners DEBUG_FORTRANFLAGS=-march=nocona -mtune=core2 -ftree-vectorize -fPIC -fstack-protector -O2 -pipe -isystem /Users/kongf/projects/miniconda3/envs/moose-mpich/include -march=nocona -mtune=core2 -ftree-vectorize -fPIC -fstack-protector -O2 -pipe -Og -g -Wall -Wextra -fcheck=all -fbacktrace -fimplicit-none -fvar-tracking-assignments COLUMNS=228 CONDA_BUILD_SYSROOT=/Library/Developer/CommandLineTools/SDKs/MacOSX10.14.sdk CONDA_BACKUP_LDFLAGS= -Wl,-rpath,/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib STRINGS=/Users/kongf/projects/miniconda3/envs/moose-mpich/bin/x86_64-apple-darwin13.4.0-strings _CE_CONDA= CHECKSYMS=/Users/kongf/projects/miniconda3/envs/moose-mpich/bin/x86_64-apple-darwin13.4.0-checksyms CONDA_PREFIX_1=/Users/kongf/projects/miniconda3 PATH=/Users/kongf/projects/miniconda3/envs/moose-mpich/bin:/Users/kongf/projects/miniconda3/condabin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/Library/TeX/texbin:/opt/X11/bin DEBUG_CXXFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -std=c++14 -fmessage-length=0 -Og -g -Wall -Wextra -isystem /Users/kongf/projects/miniconda3/envs/moose-mpich/include LD=/Users/kongf/projects/miniconda3/envs/moose-mpich/bin/x86_64-apple-darwin13.4.0-ld CONDA_PREFIX=/Users/kongf/projects/miniconda3/envs/moose-mpich PWD=/Users/kongf/projects/petsc1 STRIP=/Users/kongf/projects/miniconda3/envs/moose-mpich/bin/x86_64-apple-darwin13.4.0-strip F95=/Users/kongf/projects/miniconda3/envs/moose-mpich/bin/x86_64-apple-darwin13.4.0-gfortran LANG=en_US.UTF-8 DEBUG_FFLAGS=-march=nocona -mtune=core2 -ftree-vectorize -fPIC -fstack-protector -O2 -pipe -isystem /Users/kongf/projects/miniconda3/envs/moose-mpich/include -march=nocona -mtune=core2 -ftree-vectorize -fPIC -fstack-protector -O2 -pipe -Og -g -Wall -Wextra -fcheck=all -fbacktrace -fimplicit-none -fvar-tracking-assignments XPC_FLAGS=0x0 LINES=62 REDO_PREBINDING=/Users/kongf/projects/miniconda3/envs/moose-mpich/bin/x86_64-apple-darwin13.4.0-redo_prebinding CLANG=/Users/kongf/projects/miniconda3/envs/moose-mpich/bin/x86_64-apple-darwin13.4.0-clang _CE_M= XPC_SERVICE_NAME=0 HOME=/Users/kongf SHLVL=2 FORTRANFLAGS=-march=nocona -mtune=core2 -ftree-vectorize -fPIC -fstack-protector -O2 -pipe -isystem /Users/kongf/projects/miniconda3/envs/moose-mpich/include MPIHOME=/Users/kongf/projects/miniconda3/envs/moose-mpich _CONDA_PYTHON_SYSCONFIGDATA_NAME=_sysconfigdata_x86_64_apple_darwin13_4_0 INDR=/Users/kongf/projects/miniconda3/envs/moose-mpich/bin/x86_64-apple-darwin13.4.0-indr CONDA_PYTHON_EXE=/Users/kongf/projects/miniconda3/bin/python LOGNAME=kongf CONDA_DEFAULT_ENV=moose-mpich DEBUG_CFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -Og -g -Wall -Wextra -isystem /Users/kongf/projects/miniconda3/envs/moose-mpich/include CMAKE_PREFIX_PATH=:/Users/kongf/projects/miniconda3/envs/moose-mpich SEG_ADDR_TABLE=/Users/kongf/projects/miniconda3/envs/moose-mpich/bin/x86_64-apple-darwin13.4.0-seg_addr_table DISPLAY=/private/tmp/com.apple.launchd.MYmuZpZMyM/org.macosforge.xquartz:0 LDFLAGS_LD=-pie -headerpad_max_install_names -dead_strip_dylibs -rpath /Users/kongf/projects/miniconda3/envs/moose-mpich/lib -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib SECURITYSESSIONID=186a8 _=/Users/kongf/projects/miniconda3/envs/moose-mpich/bin/mpiexec __CF_USER_TEXT_ENCODING=0x1F5:0x0:0x0 HYDI_CONTROL_FD=8 GFORTRAN_UNBUFFERED_PRECONNECTED=y MPIR_CVAR_CH3_INTERFACE_HOSTNAME=Fandes-MacBook-Pro.local MPI_LOCALNRANKS=1 MPI_LOCALRANKID=0 PMI_RANK=0 PMI_FD=4 PMI_SIZE=1 Defined "HAVE_MPIEXEC_ENVIRONMENTAL_VARIABLE" to "MPIR_CVAR_CH3" Defined make macro "MPIEXEC" to "mpiexec" Checking for program /usr/libexec/ApplicationFirewall/socketfilterfw...found Defined make macro "SOCKETFILTERFW" to "/usr/libexec/ApplicationFirewall/socketfilterfw" Running Executable with threads to time it out at 60 Executing: /usr/libexec/ApplicationFirewall/socketfilterfw --getglobalstate stdout: Firewall is disabled. (State = 0) Checking for program /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/hostname...not found Checking for program /Users/kongf/projects/miniconda3/condabin/hostname...not found Checking for program /usr/local/bin/hostname...not found Checking for program /usr/bin/hostname...not found Checking for program /bin/hostname...found Defined make macro "HOSTNAME" to "hostname" Running Executable with threads to time it out at 60 Executing: hostname stdout: Fandes-MacBook-Pro.local Return code from hostname: 0 Hostname works, running network checks Checking for program /sbin/ping...found Defined make macro "PING" to "/sbin/ping" Executing: uname -s stdout: Darwin Running Executable with threads to time it out at 60 Executing: /sbin/ping -c 2 Fandes-MacBook-Pro.local Exception: while running ping skipping ping check Checking for program /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/host...not found Checking for program /Users/kongf/projects/miniconda3/condabin/host...not found Checking for program /usr/local/bin/host...not found Checking for program /usr/bin/host...found Defined make macro "HOST" to "host" Running Executable with threads to time it out at 60 Executing: host Fandes-MacBook-Pro.local stdout: Host Fandes-MacBook-Pro.local not found: 3(NXDOMAIN) Exception: while running host skipping host check Checking for program /usr/sbin/traceroute...found Defined make macro "TRACEROUTE" to "/usr/sbin/traceroute" Running Executable with threads to time it out at 60 Executing: /usr/sbin/traceroute Fandes-MacBook-Pro.local Exception: while running traceroute skipping traceroute check ============================================================================================= ***** WARNING: mpiexec may not work on your system due to network issues. Perhaps you have VPN running whose network settings may not work with mpiexec or your network is misconfigured ============================================================================================= ============================================================================================= ======== Checking running linked program ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.sharedLibraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.scalarTypes -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Init(0,0); MPI_Finalize(); ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.o -lc++ -ldl -lgcc_s.1 Testing executable /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest to see if it can be run Executing: mpiexec -n 1 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest Running Executable with threads to time it out at 120 Executing: mpiexec -n 1 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest ============================================================================================= TESTING: configureMPITypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:432) Checking for MPI Datatype handles ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.sharedLibraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.scalarTypes -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_LONG_DOUBLE, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Defined "HAVE_MPI_LONG_DOUBLE" to "1" ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.sharedLibraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.scalarTypes -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_INT64_T, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Defined "HAVE_MPI_INT64_T" to "1" ============================================================================================= TESTING: SGIMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:478) Returns true if SGI MPI is used Checking for functions [MPI_SGI_barrier] in library [] [] ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.sharedLibraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.scalarTypes -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_SGI_barrier(); static void _check_MPI_SGI_barrier() { MPI_SGI_barrier(); } int main() { _check_MPI_SGI_barrier();; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -lc++ -ldl -lgcc_s.1 Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_MPI_SGI_barrier", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation) Linker output before filtering: Undefined symbols for architecture x86_64: "_MPI_SGI_barrier", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "_MPI_SGI_barrier", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation): SGI MPI test failure ============================================================================================= TESTING: CxxMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:488) Make sure C++ can compile and link Checking for header mpi.h Checking for C++ MPI_Finalize() Checking for functions [MPI_Finalize] in library [] [] ===== Checking linker Executing: mpicxx -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O3 -fPIC /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_MPI_Finalize() { int ierr; ierr = MPI_Finalize();; } int main() { _check_MPI_Finalize();; return 0; } Executing: mpicxx -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -lc++ -ldl -lgcc_s.1 ============================================================================================= TESTING: FortranMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:504) Make sure fortran include [mpif.h] and library symbols are found Checking for fortran mpi_init() Checking for functions [] in library [] [] ===== Checking linker Executing: mpif90 -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.F90 Successful compile: Source: program main #include "mpif.h" integer ierr call mpi_init(ierr) end Executing: mpif90 -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -lc++ -ldl -lgcc_s.1 Checking for mpi.mod Checking for functions [] in library [] [] ===== Checking linker Executing: mpif90 -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.F90 Successful compile: Source: program main use mpi integer(kind=selected_int_kind(5)) ierr,rank call mpi_init(ierr) call mpi_comm_rank(MPI_COMM_WORLD,rank,ierr) end Executing: mpif90 -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -lc++ -ldl -lgcc_s.1 Defined "HAVE_MPI_F90MODULE" to "1" ============================================================================================= TESTING: configureIO from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:526) Check for the functions in MPI/IO - Define HAVE_MPIIO if they are present - Some older MPI 1 implementations are missing these ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.sharedLibraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.scalarTypes -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:7:48: warning: if statement has empty body [-Wempty-body] if (MPI_Type_get_extent(MPI_INT, &lb, &extent)); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:7:48: note: put the semicolon on a separate line to silence this warning /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:12:54: warning: if statement has empty body [-Wempty-body] if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:12:54: note: put the semicolon on a separate line to silence this warning /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:14:102: warning: if statement has empty body [-Wempty-body] if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:14:102: note: put the semicolon on a separate line to silence this warning /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:18:61: warning: if statement has empty body [-Wempty-body] if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:18:61: note: put the semicolon on a separate line to silence this warning /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:20:101: warning: if statement has empty body [-Wempty-body] if (MPI_File_open(MPI_COMM_SELF, "", 0, info, &fh)); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:20:101: note: put the semicolon on a separate line to silence this warning /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:22:74: warning: if statement has empty body [-Wempty-body] if (MPI_File_close(&fh)); ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:22:74: note: put the semicolon on a separate line to silence this warning /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:18:55: warning: variable 'info' is uninitialized when used here [-Wuninitialized] if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); ^~~~ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:17:14: note: initialize the variable 'info' to silence this warning MPI_Info info; ^ = 0 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:12:24: warning: variable 'fh' is uninitialized when used here [-Wuninitialized] if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); ^~ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:9:61: note: initialize the variable 'fh' to silence this warning MPI_File fh; ^ = 0 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:18:27: warning: variable 'disp' is uninitialized when used here [-Wuninitialized] if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); ^~~~ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:16:65: note: initialize the variable 'disp' to silence this warning MPI_Offset disp; ^ = 0 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:14:76: warning: variable 'buf' is uninitialized when used here [-Wuninitialized] if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)); ^~~ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:10:10: note: initialize the variable 'buf' to silence this warning void *buf; ^ = 0 10 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Aint lb, extent; if (MPI_Type_get_extent(MPI_INT, &lb, &extent)); MPI_File fh; void *buf; MPI_Status status; if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)); MPI_Offset disp; MPI_Info info; if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); if (MPI_File_open(MPI_COMM_SELF, "", 0, info, &fh)); if (MPI_File_close(&fh)); ; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.o -lc++ -ldl -lgcc_s.1 Defined "HAVE_MPIIO" to "1" ============================================================================================= TESTING: findMPIInc from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:630) Find MPI include paths from "mpicc -show" and use with CUDAC_FLAGS ============================================================================================= TESTING: PetscArchMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:672) Checking for functions [MPI_Type_get_envelope MPI_Type_dup MPI_Init_thread MPI_Iallreduce MPI_Ibarrier MPI_Finalized MPI_Exscan MPI_Reduce_scatter MPI_Reduce_scatter_block] in library [] [] ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.sharedLibraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.scalarTypes -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Type_get_envelope(); static void _check_MPI_Type_get_envelope() { MPI_Type_get_envelope(); } char MPI_Type_dup(); static void _check_MPI_Type_dup() { MPI_Type_dup(); } char MPI_Init_thread(); static void _check_MPI_Init_thread() { MPI_Init_thread(); } char MPI_Iallreduce(); static void _check_MPI_Iallreduce() { MPI_Iallreduce(); } char MPI_Ibarrier(); static void _check_MPI_Ibarrier() { MPI_Ibarrier(); } char MPI_Finalized(); static void _check_MPI_Finalized() { MPI_Finalized(); } char MPI_Exscan(); static void _check_MPI_Exscan() { MPI_Exscan(); } char MPI_Reduce_scatter(); static void _check_MPI_Reduce_scatter() { MPI_Reduce_scatter(); } char MPI_Reduce_scatter_block(); static void _check_MPI_Reduce_scatter_block() { MPI_Reduce_scatter_block(); } int main() { _check_MPI_Type_get_envelope(); _check_MPI_Type_dup(); _check_MPI_Init_thread(); _check_MPI_Iallreduce(); _check_MPI_Ibarrier(); _check_MPI_Finalized(); _check_MPI_Exscan(); _check_MPI_Reduce_scatter(); _check_MPI_Reduce_scatter_block();; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -lc++ -ldl -lgcc_s.1 Defined "HAVE_MPI_TYPE_GET_ENVELOPE" to "1" Defined "HAVE_MPI_TYPE_DUP" to "1" Defined "HAVE_MPI_INIT_THREAD" to "1" Defined "HAVE_MPI_IALLREDUCE" to "1" Defined "HAVE_MPI_IBARRIER" to "1" Defined "HAVE_MPI_FINALIZED" to "1" Defined "HAVE_MPI_EXSCAN" to "1" Defined "HAVE_MPI_REDUCE_SCATTER" to "1" Defined "HAVE_MPI_REDUCE_SCATTER_BLOCK" to "1" ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.sharedLibraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.scalarTypes -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:6:5: warning: unused variable 'combiner' [-Wunused-variable] int combiner = MPI_COMBINER_DUP;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_DUP;; return 0; } Defined "HAVE_MPI_COMBINER_DUP" to "1" ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.sharedLibraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.scalarTypes -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:6:5: warning: unused variable 'combiner' [-Wunused-variable] int combiner = MPI_COMBINER_CONTIGUOUS;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_CONTIGUOUS;; return 0; } Defined "HAVE_MPI_COMBINER_CONTIGUOUS" to "1" ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.sharedLibraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.scalarTypes -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c:6:5: warning: unused variable 'combiner' [-Wunused-variable] int combiner = MPI_COMBINER_NAMED;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_NAMED;; return 0; } Defined "HAVE_MPI_COMBINER_NAMED" to "1" ============================================================================================= TESTING: checkVersion from config.packages.MPI(config/BuildSystem/config/package.py:1026) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "mpi.h" ;petscpkgver(MPI_VERSION); Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI/conftest.c For mpi need 2 <= 3 <= ============================================================================================= TESTING: checkSharedLibrary from config.packages.MPI(config/BuildSystem/config/package.py:955) By default we don't care about checking if the library is shared child config.packages.MPI 18.197499 ============================================================================================= TESTING: consistencyChecks from config.packages.zstd(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.zstd(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.zstd 0.001393 ============================================================================================= TESTING: consistencyChecks from config.packages.yaml(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.yaml(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.yaml 0.000926 ============================================================================================= TESTING: consistencyChecks from config.packages.sycl(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.sycl(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.sycl 0.000834 ============================================================================================= TESTING: consistencyChecks from config.packages.ssl(config/BuildSystem/config/packages/ssl.py:31) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ssl(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.ssl 0.001064 ============================================================================================= TESTING: consistencyChecks from config.packages.sprng(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.sprng(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.sprng 0.000911 Not checking sowing on user request of --with-sowing=0 child config.packages.sowing 0.000357 ============================================================================================= TESTING: consistencyChecks from config.packages.revolve(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.revolve(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.revolve 0.000939 ============================================================================================= TESTING: consistencyChecks from config.packages.radau5(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.radau5(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.radau5 0.001025 ============================================================================================= TESTING: consistencyChecks from config.packages.pami(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.pami(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.pami 0.000854 ============================================================================================= TESTING: consistencyChecks from config.packages.opengles(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.opengles(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.opengles 0.000810 ============================================================================================= TESTING: consistencyChecks from config.packages.opencl(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.opencl(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.opencl 0.000781 ============================================================================================= TESTING: consistencyChecks from config.packages.muparser(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.muparser(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.muparser 0.000880 ============================================================================================= TESTING: consistencyChecks from config.packages.mpe(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mpe(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.mpe 0.000896 ============================================================================================= TESTING: consistencyChecks from config.packages.memkind(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.memkind(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.memkind 0.000770 ============================================================================================= TESTING: consistencyChecks from config.packages.libmesh(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.libmesh(config/BuildSystem/config/packages/libmesh.py:76) Defined make rule "libmesh-build" with dependencies "" and code [] Defined make rule "libmesh-install" with dependencies "" and code [] child config.packages.libmesh 0.001102 ============================================================================================= TESTING: consistencyChecks from config.packages.moose(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.moose(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.moose 0.000845 ============================================================================================= TESTING: consistencyChecks from config.packages.libjpeg(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.libjpeg(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.libjpeg 0.000853 Checking for program /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/lgrind...not found Checking for program /Users/kongf/projects/miniconda3/condabin/lgrind...not found Checking for program /usr/local/bin/lgrind...not found Checking for program /usr/bin/lgrind...not found Checking for program /bin/lgrind...not found Checking for program /usr/sbin/lgrind...not found Checking for program /sbin/lgrind...not found Checking for program /Library/TeX/texbin/lgrind...not found Checking for program /opt/X11/bin/lgrind...not found Checking for program /Users/kongf/projects/petsc1/lib/petsc/bin/win32fe/lgrind...not found child config.packages.lgrind 0.000572 ============================================================================================= TESTING: consistencyChecks from config.packages.hip(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.hip(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.hip 0.000778 child config.packages.gmsh 0.000131 ============================================================================================= TESTING: consistencyChecks from config.packages.gmp(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.gmp(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.gmp 0.000856 ============================================================================================= TESTING: consistencyChecks from config.packages.mpfr(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mpfr(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.mpfr 0.000855 ============================================================================================= TESTING: consistencyChecks from config.packages.giflib(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.giflib(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.giflib 0.000853 ============================================================================================= TESTING: consistencyChecks from config.packages.cub(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.cub(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.cub 0.000861 ============================================================================================= TESTING: consistencyChecks from config.packages.ctetgen(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ctetgen(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.ctetgen 0.000891 ============================================================================================= TESTING: consistencyChecks from config.packages.concurrencykit(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.concurrencykit(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.concurrencykit 0.000849 ============================================================================================= TESTING: locateC2html from config.packages.c2html(config/BuildSystem/config/packages/c2html.py:30) Looking for default C2html executable Checking for program /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/c2html...not found Checking for program /Users/kongf/projects/miniconda3/condabin/c2html...not found Checking for program /usr/local/bin/c2html...not found Checking for program /usr/bin/c2html...not found Checking for program /bin/c2html...not found Checking for program /usr/sbin/c2html...not found Checking for program /sbin/c2html...not found Checking for program /Library/TeX/texbin/c2html...not found Checking for program /opt/X11/bin/c2html...not found Checking for program /Users/kongf/projects/petsc1/lib/petsc/bin/win32fe/c2html...not found child config.packages.c2html 0.000959 ============================================================================================= TESTING: consistencyChecks from config.packages.boost(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.boost(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.boost 0.000873 ============================================================================================= TESTING: consistencyChecks from config.packages.silo(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.silo(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.silo 0.000879 ============================================================================================= TESTING: consistencyChecks from config.packages.Random123(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Random123(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.Random123 0.000858 ============================================================================================= TESTING: consistencyChecks from config.packages.PARTY(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.PARTY(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.PARTY 0.000852 ============================================================================================= TESTING: consistencyChecks from config.packages.NVSHMEM(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.NVSHMEM(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.NVSHMEM 0.000765 ============================================================================================= TESTING: consistencyChecks from config.packages.Matlab(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Matlab(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.Matlab 0.000717 ============================================================================================= TESTING: consistencyChecks from config.packages.MatlabEngine(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.MatlabEngine(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.MatlabEngine 0.000761 ============================================================================================= TESTING: consistencyChecks from config.packages.Mathematica(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Mathematica(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.Mathematica 0.000764 ============================================================================================= TESTING: consistencyChecks from config.packages.regex(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.regex(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.regex(config/BuildSystem/config/package.py:897) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional regex Checking for library in Compiler specific search REGEX: [] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [regexec regcomp regfree] in library [] [] ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.sharedLibraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.scalarTypes -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char regexec(); static void _check_regexec() { regexec(); } char regcomp(); static void _check_regcomp() { regcomp(); } char regfree(); static void _check_regfree() { regfree(); } int main() { _check_regexec(); _check_regcomp(); _check_regfree();; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -lc++ -ldl -lgcc_s.1 Checking for optional headers [] in Compiler specific search REGEX: ['/Users/kongf/projects/miniconda3/envs/moose-mpich/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/Users/kongf/projects/miniconda3/envs/moose-mpich/include'] Found header files [] in ['/Users/kongf/projects/miniconda3/envs/moose-mpich/include'] Checking for headers ['regex.h'] in Compiler specific search REGEX: ['/Users/kongf/projects/miniconda3/envs/moose-mpich/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['regex.h'] in ['/Users/kongf/projects/miniconda3/envs/moose-mpich/include'] Checking include with compiler flags var CPPFLAGS ['/Users/kongf/projects/miniconda3/envs/moose-mpich/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI -I/Users/kongf/projects/miniconda3/envs/moose-mpich/include /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Found header files ['regex.h'] in ['/Users/kongf/projects/miniconda3/envs/moose-mpich/include'] ============================================================================================= TESTING: checkVersion from config.packages.regex(config/BuildSystem/config/package.py:1026) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.regex(config/BuildSystem/config/package.py:955) By default we don't care about checking if the library is shared child config.packages.regex 0.377961 ============================================================================================= TESTING: consistencyChecks from config.packages.libceed(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.libceed(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.libceed 0.001530 Defined "PYTHON_EXE" to ""/Users/kongf/projects/miniconda3/envs/moose-mpich/bin/python3"" Executing: /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/python3 -c "import Cython" Executing: /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/python3 -c "import numpy" child config.packages.python 0.372811 ============================================================================================= TESTING: consistencyChecks from config.packages.petsc4py(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.petsc4py(config/BuildSystem/config/packages/petsc4py.py:131) Defined make rule "petsc4py-build" with dependencies "" and code [] Defined make rule "petsc4py-install" with dependencies "" and code [] Defined make rule "petsc4pytest" with dependencies "" and code [] child config.packages.petsc4py 0.001658 ============================================================================================= TESTING: consistencyChecks from config.packages.mpi4py(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mpi4py(config/BuildSystem/config/packages/mpi4py.py:79) Defined make rule "mpi4py-build" with dependencies "" and code [] Defined make rule "mpi4py-install" with dependencies "" and code [] child config.packages.mpi4py 0.001162 ============================================================================================= TESTING: consistencyChecks from config.packages.slepc(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.slepc(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.slepc(config/BuildSystem/config/package.py:897) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional slepc Looking for SLEPC at git.slepc, hg.slepc or a directory starting with ['slepc'] Found a copy of SLEPC in git.slepc Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Executing: ['git', 'cat-file', '-e', '7aec77e6cef135754b22df29b71280107e1fd2d7^{commit}'] Executing: ['git', 'rev-parse', '7aec77e6cef135754b22df29b71280107e1fd2d7'] stdout: 7aec77e6cef135754b22df29b71280107e1fd2d7 Executing: ['git', '-c', 'user.name=petsc-configure', '-c', 'user.email=petsc@configure', 'stash'] stdout: No local changes to save Executing: ['git', 'clean', '-f', '-d', '-x'] stdout: Removing arch-darwin-c-opt/ Removing config/__pycache__/ Removing config/packages/__pycache__/ Removing configure.log Removing make.log Removing pkg.gitcommit Executing: ['git', 'checkout', '-f', '7aec77e6cef135754b22df29b71280107e1fd2d7'] Defined "HAVE_SLEPC" to "1" Defined make macro "SLEPC" to "yes" Defined make rule "slepcbuild" with dependencies "" and code ['@echo "*** Building SLEPc ***"', '@${RM} -f ${PETSC_ARCH}/lib/petsc/conf/slepc.errorflg', '@(cd /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.slepc && \\\n SLEPC_DIR=/Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.slepc /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/python3 ./configure --with-clean --prefix=/Users/kongf/projects/petsc1/arch-darwin-c-opt && \\\n SLEPC_DIR=/Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.slepc ${OMAKE} SLEPC_DIR=/Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.slepc ) || \\\n (echo "**************************ERROR*************************************" && \\\n echo "Error building SLEPc." && \\\n echo "********************************************************************" && \\\n touch ${PETSC_ARCH}/lib/petsc/conf/slepc.errorflg && \\\n exit 1)'] Defined make rule "slepcinstall" with dependencies "" and code ['@echo "*** Installing SLEPc ***"', '@(cd /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.slepc && \\\n SLEPC_DIR=/Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.slepc ${OMAKE} install SLEPC_DIR=/Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.slepc ) || \\\n (echo "**************************ERROR*************************************" && \\\n echo "Error building SLEPc." && \\\n echo "********************************************************************" && \\\n exit 1)'] Defined make rule "slepc-build" with dependencies "slepcbuild slepcinstall" and code [] Defined make rule "slepc-install" with dependencies "" and code [] ============================================================================================= SLEPc examples are available at ${PETSC_DIR}/arch-darwin-c-opt/externalpackages/git.slepc export SLEPC_DIR=${PETSC_DIR}/arch-darwin-c-opt ============================================================================================= ============================================================================================= TESTING: checkSharedLibrary from config.packages.slepc(config/BuildSystem/config/package.py:955) By default we don't care about checking if the library is shared child config.packages.slepc 0.823402 ============================================================================================= TESTING: consistencyChecks from config.packages.opengl(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.opengl(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.opengl 0.001552 ============================================================================================= TESTING: consistencyChecks from config.packages.glut(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.glut(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.glut 0.001472 ============================================================================================= TESTING: consistencyChecks from config.packages.GLVis(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.GLVis(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.GLVis 0.001603 ============================================================================================= TESTING: consistencyChecks from config.packages.CoDiPack(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.CoDiPack(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.CoDiPack 0.001619 ============================================================================================= TESTING: consistencyChecks from config.packages.adblaslapack(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.adblaslapack(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.adblaslapack 0.001625 child config.packages.cxxlibs 0.000025 ============================================================================================= TESTING: locateCMake from config.packages.cmake(config/BuildSystem/config/packages/cmake.py:50) Looking for default CMake executable Checking for program /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/cmake...found Defined make macro "CMAKE" to "/Users/kongf/projects/miniconda3/envs/moose-mpich/bin/cmake" Looking for default CTest executable Checking for program /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/ctest...found Defined make macro "CTEST" to "/Users/kongf/projects/miniconda3/envs/moose-mpich/bin/ctest" Executing: /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/cmake --version stdout: cmake version 3.16.4 CMake suite maintained and supported by Kitware (kitware.com/cmake). cmake version found 3.16.4 child config.packages.cmake 0.074687 ============================================================================================= TESTING: consistencyChecks from config.packages.unittestcpp(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.unittestcpp(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.unittestcpp 0.002295 ============================================================================================= TESTING: consistencyChecks from config.packages.googletest(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.googletest(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.googletest 0.001613 ============================================================================================= TESTING: consistencyChecks from config.packages.eigen(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.eigen(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.eigen 0.001585 ============================================================================================= TESTING: consistencyChecks from config.packages.szlib(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.szlib(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.szlib 0.001681 ============================================================================================= TESTING: consistencyChecks from config.packages.zlib(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.zlib(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.zlib 0.001636 child config.packages.mathlib 0.000027 ============================================================================================= TESTING: consistencyChecks from config.packages.tetgen(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.tetgen(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.tetgen 0.001830 ============================================================================================= TESTING: consistencyChecks from config.packages.tchem(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.tchem(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.tchem 0.001652 ============================================================================================= TESTING: consistencyChecks from config.packages.saws(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.saws(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.saws 0.002222 ============================================================================================= TESTING: consistencyChecks from config.packages.libpng(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.libpng(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.libpng 0.002802 ============================================================================================= TESTING: consistencyChecks from config.packages.combblas(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.combblas(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.combblas 0.001952 ============================================================================================= TESTING: consistencyChecks from config.packages.Triangle(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Triangle(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.Triangle 0.001490 ============================================================================================= TESTING: consistencyChecks from config.packages.metis(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.metis(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.metis(config/BuildSystem/config/packages/metis.py:46) ================================================================================== Checking for a functional metis Looking for METIS at git.metis, hg.metis or a directory starting with ['petsc-pkg-metis'] Found a copy of METIS in git.metis Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Executing: ['git', 'cat-file', '-e', 'v5.1.0-p10^{commit}'] Executing: ['git', 'rev-parse', 'v5.1.0-p10'] stdout: c8d2dc1e751ef7ebe5e221156d7572d7cea26990 Executing: ['git', '-c', 'user.name=petsc-configure', '-c', 'user.email=petsc@configure', 'stash'] stdout: No local changes to save Executing: ['git', 'clean', '-f', '-d', '-x'] stdout: Removing metis.petscconf Removing petsc-build/ Removing pkg.gitcommit Executing: ['git', 'checkout', '-f', 'c8d2dc1e751ef7ebe5e221156d7572d7cea26990'] Executing: mpif90 -V Executing: mpif90 --version stdout: GNU Fortran (GCC) 7.3.0 Copyright (C) 2017 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Executing: mpif90 -V Executing: mpif90 --version stdout: GNU Fortran (GCC) 7.3.0 Copyright (C) 2017 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Executing: mpif90 -V Executing: mpif90 --version stdout: GNU Fortran (GCC) 7.3.0 Copyright (C) 2017 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Have to rebuild METIS, /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.metis/metis.petscconf != /Users/kongf/projects/petsc1/arch-darwin-c-opt/lib/petsc/conf/pkg.conf.metis ============================================================================================= Configuring METIS with cmake; this may take several minutes ============================================================================================= Executing: /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/cmake .. -DCMAKE_INSTALL_PREFIX=/Users/kongf/projects/petsc1/arch-darwin-c-opt -DCMAKE_INSTALL_NAME_DIR:STRING="/Users/kongf/projects/petsc1/arch-darwin-c-opt/lib" -DCMAKE_INSTALL_LIBDIR:STRING="lib" -DCMAKE_VERBOSE_MAKEFILE=1 -DCMAKE_BUILD_TYPE=Release -DCMAKE_C_COMPILER="mpicc" -DMPI_C_COMPILER="mpicc" -DCMAKE_AR=/usr/bin/ar -DCMAKE_RANLIB=/usr/bin/ranlib -DCMAKE_C_FLAGS:STRING="-fPIC -fstack-protector -Qunused-arguments -g -O3" -DCMAKE_C_FLAGS_DEBUG:STRING="-fPIC -fstack-protector -Qunused-arguments -g -O3" -DCMAKE_C_FLAGS_RELEASE:STRING="-fPIC -fstack-protector -Qunused-arguments -g -O3" -DCMAKE_CXX_COMPILER="mpicxx" -DMPI_CXX_COMPILER="mpicxx" -DCMAKE_CXX_FLAGS:STRING="-fstack-protector -g -O3 -fPIC" -DCMAKE_CXX_FLAGS_DEBUG:STRING="-fstack-protector -g -O3 -fPIC" -DCMAKE_CXX_FLAGS_RELEASE:STRING="-fstack-protector -g -O3 -fPIC" -DCMAKE_Fortran_COMPILER="mpif90" -DMPI_Fortran_COMPILER="mpif90" -DCMAKE_Fortran_FLAGS:STRING="-ffree-line-length-0 -g -O" -DCMAKE_Fortran_FLAGS_DEBUG:STRING="-ffree-line-length-0 -g -O" -DCMAKE_Fortran_FLAGS_RELEASE:STRING="-ffree-line-length-0 -g -O" -DBUILD_SHARED_LIBS:BOOL=ON -DGKLIB_PATH=../GKlib -DGKRAND=1 -DSHARED=1 -DMETIS_USE_LONGINDEX=1 -DMATH_LIB="" stdout: -- The C compiler identification is Clang 9.0.1 -- Check for working C compiler: /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/mpicc -- Check for working C compiler: /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/mpicc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Looking for execinfo.h -- Looking for execinfo.h - found -- Looking for getline -- Looking for getline - found -- Performing Test HAVE__thread -- Performing Test HAVE__thread - Success -- checking for __thread thread-local storage - found -- Configuring done -- Generating done -- Build files have been written to: /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.metis/petsc-build ============================================================================================= Compiling and installing METIS; this may take several minutes ============================================================================================= Executing: /usr/bin/make -j7 -l12.0 stdout: /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/cmake -S/Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.metis -B/Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.metis/petsc-build --check-build-system CMakeFiles/Makefile.cmake 0 /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/cmake -E cmake_progress_start /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.metis/petsc-build/CMakeFiles /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.metis/petsc-build/CMakeFiles/progress.marks /Library/Developer/CommandLineTools/usr/bin/make -f CMakeFiles/Makefile2 all /Library/Developer/CommandLineTools/usr/bin/make -f libmetis/CMakeFiles/metis.dir/build.make libmetis/CMakeFiles/metis.dir/depend cd /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.metis/petsc-build && /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/cmake -E cmake_depends "Unix Makefiles" /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.metis /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.metis/libmetis /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.metis/petsc-build /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.metis/petsc-build/libmetis /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.metis/petsc-build/libmetis/CMakeFiles/metis.dir/DependInfo.cmake --color= Scanning dependencies of target metis /Library/Developer/CommandLineTools/usr/bin/make -f libmetis/CMakeFiles/metis.dir/build.make libmetis/CMakeFiles/metis.dir/build [ 3%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/error.c.o [ 4%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/csr.c.o [ 1%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/fkvkselect.c.o [ 6%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/blas.c.o cd /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.metis/petsc-build/libmetis && /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/mpicc -Dmetis_EXPORTS -I/Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.metis/GKlib -I/Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.metis/include -I/Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.metis/libmetis/. -I/Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.metis/petsc-build/include -fPIC -fstack-protector -Qunused-arguments -g -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -fstack-protector -Qunused-arguments -g -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX10.14.sdk -fPIC -o CMakeFiles/metis.dir/__/GKlib/fkvkselect.c.o -c /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.metis/GKlib/fkvkselect.c [ 8%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/b64.c.o [ 9%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/evaluate.c.o [ 11%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/fs.c.o cd 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/Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.metis/petsc-build/libmetis && /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/mpicc -Dmetis_EXPORTS -I/Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.metis/GKlib -I/Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.metis/include -I/Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.metis/libmetis/. -I/Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.metis/petsc-build/include -fPIC -fstack-protector -Qunused-arguments -g -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -fstack-protector -Qunused-arguments -g -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX10.14.sdk -fPIC -o CMakeFiles/metis.dir/__/GKlib/error.c.o -c /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.metis/GKlib/error.c cd 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Run "cmake --help-policy CMP0042" for policy details. Use the cmake_policy command to set the policy and suppress this warning. MACOSX_RPATH is not specified for the following targets: metis This warning is for project developers. Use -Wno-dev to suppress it. 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-I/Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.metis/include -I/Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.metis/libmetis/. -I/Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.metis/petsc-build/include -fPIC -fstack-protector -Qunused-arguments -g -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -fstack-protector -Qunused-arguments -g -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX10.14.sdk -fPIC -o CMakeFiles/metis.dir/util.c.o -c /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.metis/libmetis/util.c cd /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.metis/petsc-build/libmetis && /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/mpicc -Dmetis_EXPORTS -I/Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.metis/GKlib 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-fPIC -fstack-protector -Qunused-arguments -g -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -fstack-protector -Qunused-arguments -g -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX10.14.sdk -dynamiclib -Wl,-headerpad_max_install_names -o libmetis.dylib -install_name /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.metis/petsc-build/libmetis/libmetis.dylib CMakeFiles/metis.dir/__/GKlib/b64.c.o CMakeFiles/metis.dir/__/GKlib/blas.c.o CMakeFiles/metis.dir/__/GKlib/csr.c.o CMakeFiles/metis.dir/__/GKlib/error.c.o CMakeFiles/metis.dir/__/GKlib/evaluate.c.o CMakeFiles/metis.dir/__/GKlib/fkvkselect.c.o CMakeFiles/metis.dir/__/GKlib/fs.c.o CMakeFiles/metis.dir/__/GKlib/getopt.c.o CMakeFiles/metis.dir/__/GKlib/gkregex.c.o CMakeFiles/metis.dir/__/GKlib/graph.c.o CMakeFiles/metis.dir/__/GKlib/htable.c.o CMakeFiles/metis.dir/__/GKlib/io.c.o CMakeFiles/metis.dir/__/GKlib/itemsets.c.o CMakeFiles/metis.dir/__/GKlib/mcore.c.o CMakeFiles/metis.dir/__/GKlib/memory.c.o CMakeFiles/metis.dir/__/GKlib/omp.c.o CMakeFiles/metis.dir/__/GKlib/pdb.c.o CMakeFiles/metis.dir/__/GKlib/pqueue.c.o CMakeFiles/metis.dir/__/GKlib/random.c.o CMakeFiles/metis.dir/__/GKlib/rw.c.o CMakeFiles/metis.dir/__/GKlib/seq.c.o CMakeFiles/metis.dir/__/GKlib/sort.c.o CMakeFiles/metis.dir/__/GKlib/string.c.o CMakeFiles/metis.dir/__/GKlib/timers.c.o CMakeFiles/metis.dir/__/GKlib/tokenizer.c.o CMakeFiles/metis.dir/__/GKlib/util.c.o CMakeFiles/metis.dir/auxapi.c.o CMakeFiles/metis.dir/balance.c.o CMakeFiles/metis.dir/bucketsort.c.o CMakeFiles/metis.dir/checkgraph.c.o CMakeFiles/metis.dir/coarsen.c.o CMakeFiles/metis.dir/compress.c.o CMakeFiles/metis.dir/contig.c.o CMakeFiles/metis.dir/debug.c.o CMakeFiles/metis.dir/fm.c.o CMakeFiles/metis.dir/fortran.c.o CMakeFiles/metis.dir/frename.c.o CMakeFiles/metis.dir/gklib.c.o CMakeFiles/metis.dir/graph.c.o CMakeFiles/metis.dir/initpart.c.o CMakeFiles/metis.dir/kmetis.c.o CMakeFiles/metis.dir/kwayfm.c.o CMakeFiles/metis.dir/kwayrefine.c.o CMakeFiles/metis.dir/mcutil.c.o CMakeFiles/metis.dir/mesh.c.o CMakeFiles/metis.dir/meshpart.c.o CMakeFiles/metis.dir/minconn.c.o CMakeFiles/metis.dir/mincover.c.o CMakeFiles/metis.dir/mmd.c.o CMakeFiles/metis.dir/ometis.c.o CMakeFiles/metis.dir/options.c.o CMakeFiles/metis.dir/parmetis.c.o CMakeFiles/metis.dir/pmetis.c.o CMakeFiles/metis.dir/refine.c.o CMakeFiles/metis.dir/separator.c.o CMakeFiles/metis.dir/sfm.c.o CMakeFiles/metis.dir/srefine.c.o CMakeFiles/metis.dir/stat.c.o CMakeFiles/metis.dir/timing.c.o CMakeFiles/metis.dir/util.c.o CMakeFiles/metis.dir/wspace.c.o [100%] Built target metis /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/cmake -E cmake_progress_start /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.metis/petsc-build/CMakeFiles 0/Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.metis/libmetis/balance.c:23:9: warning: using integer absolute value function 'labs' when argument is of floating point type [-Wabsolute-value] if (iabs(ntpwgts[0]*graph->tvwgt[0]-graph->pwgts[0]) < 3*graph->tvwgt[0]/graph->nvtxs) ^ /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.metis/petsc-build/include/metis.h:127:25: note: expanded from macro 'iabs' #define iabs labs ^ /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.metis/libmetis/balance.c:23:9: note: use function 'fabsf' instead if (iabs(ntpwgts[0]*graph->tvwgt[0]-graph->pwgts[0]) < 3*graph->tvwgt[0]/graph->nvtxs) ^~~~ fabsf /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.metis/petsc-build/include/metis.h:127:25: note: expanded from macro 'iabs' #define iabs labs ^ 1 warning generated. /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.metis/libmetis/parmetis.c:311:15: warning: absolute value function 'abs' given an argument of type 'long long' but has parameter of type 'int' which may cause truncation of value [-Wabsolute-value] mindiff = abs(pwgts[0]-pwgts[1]); ^ /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.metis/libmetis/parmetis.c:311:15: note: use function 'llabs' instead mindiff = abs(pwgts[0]-pwgts[1]); ^~~ llabs /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.metis/libmetis/parmetis.c:336:17: warning: absolute value function 'abs' given an argument of type 'long long' but has parameter of type 'int' which may cause truncation of value [-Wabsolute-value] newdiff = abs(pwgts[to]+vwgt[higain] - (pwgts[from]-rinfo[higain].edegrees[from])); ^ /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.metis/libmetis/parmetis.c:336:17: note: use function 'llabs' instead newdiff = abs(pwgts[to]+vwgt[higain] - (pwgts[from]-rinfo[higain].edegrees[from])); ^~~ llabs /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.metis/libmetis/parmetis.c:540:15: warning: absolute value function 'abs' given an argument of type 'long long' but has parameter of type 'int' which may cause truncation of value [-Wabsolute-value] mindiff = abs(pwgts[0]-pwgts[1]); ^ /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.metis/libmetis/parmetis.c:540:15: note: use function 'llabs' instead mindiff = abs(pwgts[0]-pwgts[1]); ^~~ llabs /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.metis/libmetis/parmetis.c:583:17: warning: absolute value function 'abs' given an argument of type 'long long' but has parameter of type 'int' which may cause truncation of value [-Wabsolute-value] newdiff = abs(pwgts[to]+vwgt[higain] - (pwgts[other]-rinfo[higain].edegrees[other])); ^ /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.metis/libmetis/parmetis.c:583:17: note: use function 'llabs' instead newdiff = abs(pwgts[to]+vwgt[higain] - (pwgts[other]-rinfo[higain].edegrees[other])); ^~~ llabs 4 warnings generated. /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/cmake -S/Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.metis -B/Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.metis/petsc-build --check-build-system CMakeFiles/Makefile.cmake 0 /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/cmake -E cmake_progress_start /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.metis/petsc-build/CMakeFiles /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.metis/petsc-build/CMakeFiles/progress.marks /Library/Developer/CommandLineTools/usr/bin/make -f CMakeFiles/Makefile2 all /Library/Developer/CommandLineTools/usr/bin/make -f libmetis/CMakeFiles/metis.dir/build.make libmetis/CMakeFiles/metis.dir/depend cd /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.metis/petsc-build && /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/cmake -E cmake_depends "Unix Makefiles" /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.metis /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.metis/libmetis /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.metis/petsc-build /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.metis/petsc-build/libmetis /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.metis/petsc-build/libmetis/CMakeFiles/metis.dir/DependInfo.cmake --color= /Library/Developer/CommandLineTools/usr/bin/make -f libmetis/CMakeFiles/metis.dir/build.make libmetis/CMakeFiles/metis.dir/build make[2]: Nothing to be done for `libmetis/CMakeFiles/metis.dir/build'. [100%] Built target metis /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/cmake -E cmake_progress_start /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.metis/petsc-build/CMakeFiles 0 /Library/Developer/CommandLineTools/usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Nothing to be done for `preinstall'. Install the project... /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /Users/kongf/projects/petsc1/arch-darwin-c-opt/include/metis.h -- Installing: /Users/kongf/projects/petsc1/arch-darwin-c-opt/include/gklib_tls.h -- Installing: /Users/kongf/projects/petsc1/arch-darwin-c-opt/lib/libmetis.dylib -- Up-to-date: /Users/kongf/projects/petsc1/arch-darwin-c-opt/include/gklib_defs.h -- Up-to-date: /Users/kongf/projects/petsc1/arch-darwin-c-opt/include/gklib_rename.h********End of Output of running make on METIS ******* Checking for library in Download METIS: ['/Users/kongf/projects/petsc1/arch-darwin-c-opt/lib/libmetis.a'] Contents: ['obj', 'bin', 'include', 'tests', 'lib', 'externalpackages', 'share'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [METIS_PartGraphKway] in library ['/Users/kongf/projects/petsc1/arch-darwin-c-opt/lib/libmetis.a'] [] ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.sharedLibraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.scalarTypes -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char METIS_PartGraphKway(); static void _check_METIS_PartGraphKway() { METIS_PartGraphKway(); } int main() { _check_METIS_PartGraphKway();; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -Wl,-rpath,/Users/kongf/projects/petsc1/arch-darwin-c-opt/lib -L/Users/kongf/projects/petsc1/arch-darwin-c-opt/lib -lmetis -lc++ -ldl -lgcc_s.1 Defined "HAVE_LIBMETIS" to "1" Checking for optional headers [] in Download METIS: ['/Users/kongf/projects/petsc1/arch-darwin-c-opt/include', '/Users/kongf/projects/miniconda3/envs/moose-mpich/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/Users/kongf/projects/petsc1/arch-darwin-c-opt/include', '/Users/kongf/projects/miniconda3/envs/moose-mpich/include'] Found header files [] in ['/Users/kongf/projects/petsc1/arch-darwin-c-opt/include', '/Users/kongf/projects/miniconda3/envs/moose-mpich/include'] Checking for headers ['metis.h'] in Download METIS: ['/Users/kongf/projects/petsc1/arch-darwin-c-opt/include', '/Users/kongf/projects/miniconda3/envs/moose-mpich/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['metis.h'] in ['/Users/kongf/projects/petsc1/arch-darwin-c-opt/include', '/Users/kongf/projects/miniconda3/envs/moose-mpich/include'] Checking include with compiler flags var CPPFLAGS ['/Users/kongf/projects/petsc1/arch-darwin-c-opt/include', '/Users/kongf/projects/miniconda3/envs/moose-mpich/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI -I/Users/kongf/projects/petsc1/arch-darwin-c-opt/include -I/Users/kongf/projects/miniconda3/envs/moose-mpich/include /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Found header files ['metis.h'] in ['/Users/kongf/projects/petsc1/arch-darwin-c-opt/include', '/Users/kongf/projects/miniconda3/envs/moose-mpich/include'] ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.metis/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.sharedLibraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.scalarTypes -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.metis -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 -I/Users/kongf/projects/petsc1/arch-darwin-c-opt/include /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.metis/conftest.c Possible ERROR while running compiler: stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.metis/conftest.c:8:7: warning: extra tokens at end of #endif directive [-Wextra-tokens] #endif; ^ // 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include "metis.h" int main() { #if (IDXTYPEWIDTH != 64) #error incompatible IDXTYPEWIDTH #endif; return 0; } ============================================================================================= TESTING: checkVersion from config.packages.metis(config/BuildSystem/config/package.py:1026) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "metis.h" ;petscpkgver(METIS_VER_MAJOR.METIS_VER_MINOR.METIS_VER_SUBMINOR); Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.metis -I/Users/kongf/projects/petsc1/arch-darwin-c-opt/include /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.metis/conftest.c For metis need <= 5.1.0 <= ============================================================================================= TESTING: checkSharedLibrary from config.packages.metis(config/BuildSystem/config/package.py:955) By default we don't care about checking if the library is shared child config.packages.metis 11.262034 ============================================================================================= TESTING: consistencyChecks from config.packages.pragmatic(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.pragmatic(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.pragmatic 0.001377 ============================================================================================= TESTING: consistencyChecks from config.packages.parmetis(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.parmetis(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.parmetis(config/BuildSystem/config/packages/parmetis.py:41) ================================================================================== Checking for a functional parmetis Looking for PARMETIS at git.parmetis, hg.parmetis or a directory starting with ['petsc-pkg-parmetis'] Found a copy of PARMETIS in git.parmetis Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Executing: ['git', 'cat-file', '-e', 'v4.0.3-p6^{commit}'] Executing: ['git', 'rev-parse', 'v4.0.3-p6'] stdout: 475d8facbb324527c205f1f78a7c90bd160bddcd Executing: ['git', '-c', 'user.name=petsc-configure', '-c', 'user.email=petsc@configure', 'stash'] stdout: No local changes to save Executing: ['git', 'clean', '-f', '-d', '-x'] stdout: Removing parmetis.petscconf Removing petsc-build/ Removing pkg.gitcommit Executing: ['git', 'checkout', '-f', '475d8facbb324527c205f1f78a7c90bd160bddcd'] Executing: mpif90 -V Executing: mpif90 --version stdout: GNU Fortran (GCC) 7.3.0 Copyright (C) 2017 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Executing: mpif90 -V Executing: mpif90 --version stdout: GNU Fortran (GCC) 7.3.0 Copyright (C) 2017 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Executing: mpif90 -V Executing: mpif90 --version stdout: GNU Fortran (GCC) 7.3.0 Copyright (C) 2017 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Have to rebuild PARMETIS, /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis/parmetis.petscconf != /Users/kongf/projects/petsc1/arch-darwin-c-opt/lib/petsc/conf/pkg.conf.parmetis ============================================================================================= Configuring PARMETIS with cmake; this may take several minutes ============================================================================================= Executing: /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/cmake .. -DCMAKE_INSTALL_PREFIX=/Users/kongf/projects/petsc1/arch-darwin-c-opt -DCMAKE_INSTALL_NAME_DIR:STRING="/Users/kongf/projects/petsc1/arch-darwin-c-opt/lib" -DCMAKE_INSTALL_LIBDIR:STRING="lib" -DCMAKE_VERBOSE_MAKEFILE=1 -DCMAKE_BUILD_TYPE=Release -DCMAKE_C_COMPILER="mpicc" -DMPI_C_COMPILER="mpicc" -DCMAKE_AR=/usr/bin/ar -DCMAKE_RANLIB=/usr/bin/ranlib -DCMAKE_C_FLAGS:STRING="-fPIC -fstack-protector -Qunused-arguments -g -O3" -DCMAKE_C_FLAGS_DEBUG:STRING="-fPIC -fstack-protector -Qunused-arguments -g -O3" -DCMAKE_C_FLAGS_RELEASE:STRING="-fPIC -fstack-protector -Qunused-arguments -g -O3" -DCMAKE_CXX_COMPILER="mpicxx" -DMPI_CXX_COMPILER="mpicxx" -DCMAKE_CXX_FLAGS:STRING="-fstack-protector -g -O3 -fPIC" -DCMAKE_CXX_FLAGS_DEBUG:STRING="-fstack-protector -g -O3 -fPIC" -DCMAKE_CXX_FLAGS_RELEASE:STRING="-fstack-protector -g -O3 -fPIC" -DCMAKE_Fortran_COMPILER="mpif90" -DMPI_Fortran_COMPILER="mpif90" -DCMAKE_Fortran_FLAGS:STRING="-ffree-line-length-0 -g -O" -DCMAKE_Fortran_FLAGS_DEBUG:STRING="-ffree-line-length-0 -g -O" -DCMAKE_Fortran_FLAGS_RELEASE:STRING="-ffree-line-length-0 -g -O" -DBUILD_SHARED_LIBS:BOOL=ON -DGKLIB_PATH=../headers -DMETIS_PATH=/Users/kongf/projects/petsc1/arch-darwin-c-opt -DSHARED=1 -DCMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=ON -DMETIS_USE_LONGINDEX=1 stdout: -- The C compiler identification is Clang 9.0.1 -- Check for working C compiler: /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/mpicc -- Check for working C compiler: /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/mpicc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Configuring done -- Generating done -- Build files have been written to: /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis/petsc-build ============================================================================================= Compiling and installing PARMETIS; this may take several minutes ============================================================================================= Executing: /usr/bin/make -j7 -l12.0 stdout: /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/cmake -S/Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis -B/Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis/petsc-build --check-build-system CMakeFiles/Makefile.cmake 0 /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/cmake -E cmake_progress_start /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis/petsc-build/CMakeFiles /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis/petsc-build/CMakeFiles/progress.marks /Library/Developer/CommandLineTools/usr/bin/make -f CMakeFiles/Makefile2 all /Library/Developer/CommandLineTools/usr/bin/make -f libparmetis/CMakeFiles/parmetis.dir/build.make libparmetis/CMakeFiles/parmetis.dir/depend cd /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis/petsc-build && /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/cmake -E cmake_depends "Unix Makefiles" /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis/libparmetis /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis/petsc-build /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis/petsc-build/libparmetis /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis/petsc-build/libparmetis/CMakeFiles/parmetis.dir/DependInfo.cmake --color= Scanning dependencies of target parmetis /Library/Developer/CommandLineTools/usr/bin/make -f libparmetis/CMakeFiles/parmetis.dir/build.make libparmetis/CMakeFiles/parmetis.dir/build [ 7%] Building C object libparmetis/CMakeFiles/parmetis.dir/csrmatch.c.o [ 7%] Building C object libparmetis/CMakeFiles/parmetis.dir/ametis.c.o [ 9%] Building C object libparmetis/CMakeFiles/parmetis.dir/ctrl.c.o [ 9%] Building C object libparmetis/CMakeFiles/parmetis.dir/ComputeVertexSeparator.c.o [ 14%] Building C object libparmetis/CMakeFiles/parmetis.dir/akwayfm.c.o [ 14%] Building C object libparmetis/CMakeFiles/parmetis.dir/balancemylink.c.o cd /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/mpicc -Dparmetis_EXPORTS -I/Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis/include -I/Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis/headers -I/Users/kongf/projects/petsc1/arch-darwin-c-opt/include -I/Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis/libparmetis/. -fPIC -fstack-protector -Qunused-arguments -g -O3 -fPIC -fstack-protector -Qunused-arguments -g -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX10.14.sdk -fPIC -o CMakeFiles/parmetis.dir/ctrl.c.o -c /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis/libparmetis/ctrl.c cd /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/mpicc -Dparmetis_EXPORTS -I/Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis/include -I/Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis/headers -I/Users/kongf/projects/petsc1/arch-darwin-c-opt/include -I/Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis/libparmetis/. -fPIC -fstack-protector -Qunused-arguments -g -O3 -fPIC -fstack-protector -Qunused-arguments -g -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX10.14.sdk -fPIC -o CMakeFiles/parmetis.dir/csrmatch.c.o -c /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis/libparmetis/csrmatch.c [ 17%] Building C object libparmetis/CMakeFiles/parmetis.dir/comm.c.o cd /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/mpicc -Dparmetis_EXPORTS -I/Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis/include -I/Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis/headers -I/Users/kongf/projects/petsc1/arch-darwin-c-opt/include -I/Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis/libparmetis/. -fPIC -fstack-protector -Qunused-arguments -g -O3 -fPIC -fstack-protector -Qunused-arguments -g -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX10.14.sdk -fPIC -o CMakeFiles/parmetis.dir/ametis.c.o -c /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis/libparmetis/ametis.c cd /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/mpicc -Dparmetis_EXPORTS -I/Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis/include -I/Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis/headers -I/Users/kongf/projects/petsc1/arch-darwin-c-opt/include -I/Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis/libparmetis/. -fPIC -fstack-protector -Qunused-arguments -g -O3 -fPIC -fstack-protector -Qunused-arguments -g -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX10.14.sdk -fPIC -o CMakeFiles/parmetis.dir/balancemylink.c.o -c /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis/libparmetis/balancemylink.c cd /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/mpicc -Dparmetis_EXPORTS -I/Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis/include -I/Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis/headers -I/Users/kongf/projects/petsc1/arch-darwin-c-opt/include -I/Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis/libparmetis/. -fPIC -fstack-protector -Qunused-arguments -g -O3 -fPIC -fstack-protector -Qunused-arguments -g -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX10.14.sdk -fPIC -o 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/Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/mpicc -Dparmetis_EXPORTS -I/Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis/include -I/Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis/headers -I/Users/kongf/projects/petsc1/arch-darwin-c-opt/include -I/Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis/libparmetis/. -fPIC -fstack-protector -Qunused-arguments -g -O3 -fPIC -fstack-protector -Qunused-arguments -g -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX10.14.sdk -fPIC -o CMakeFiles/parmetis.dir/ComputeVertexSeparator.c.o -c /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis/libparmetis/ComputeVertexSeparator.c [ 19%] Building C object libparmetis/CMakeFiles/parmetis.dir/debug.c.o cd /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/mpicc -Dparmetis_EXPORTS -I/Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis/include -I/Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis/headers -I/Users/kongf/projects/petsc1/arch-darwin-c-opt/include -I/Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis/libparmetis/. -fPIC -fstack-protector -Qunused-arguments -g -O3 -fPIC -fstack-protector -Qunused-arguments -g -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX10.14.sdk -fPIC -o CMakeFiles/parmetis.dir/debug.c.o -c /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis/libparmetis/debug.c [ 21%] Building C object libparmetis/CMakeFiles/parmetis.dir/diffutil.c.o cd /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/mpicc -Dparmetis_EXPORTS -I/Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis/include -I/Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis/headers -I/Users/kongf/projects/petsc1/arch-darwin-c-opt/include -I/Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis/libparmetis/. -fPIC -fstack-protector -Qunused-arguments -g -O3 -fPIC -fstack-protector -Qunused-arguments -g -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX10.14.sdk -fPIC -o CMakeFiles/parmetis.dir/diffutil.c.o -c /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis/libparmetis/diffutil.c [ 24%] Building C object libparmetis/CMakeFiles/parmetis.dir/frename.c.o cd /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/mpicc -Dparmetis_EXPORTS 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Install the project... /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Up-to-date: /Users/kongf/projects/petsc1/arch-darwin-c-opt/include/parmetis.h -- Installing: /Users/kongf/projects/petsc1/arch-darwin-c-opt/lib/libparmetis.dylib ********Output of running make on PARMETIS follows ******* -- The C compiler identification is Clang 9.0.1 -- Check for working C compiler: /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/mpicc -- Check for working C compiler: /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/mpicc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Configuring done -- Generating done -- Build files have been written to: /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis/petsc-buildCMake Warning (dev): Policy CMP0042 is not set: MACOSX_RPATH is enabled by default. 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/Users/kongf/projects/miniconda3/envs/moose-mpich/bin/cmake -E cmake_link_script CMakeFiles/parmetis.dir/link.txt --verbose=1 /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/mpicc -fPIC -fstack-protector -Qunused-arguments -g -O3 -fPIC -fstack-protector -Qunused-arguments -g -O3 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX10.14.sdk -dynamiclib -Wl,-headerpad_max_install_names -o libparmetis.dylib -install_name /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis/petsc-build/libparmetis/libparmetis.dylib CMakeFiles/parmetis.dir/ComputeVertexSeparator.c.o CMakeFiles/parmetis.dir/akwayfm.c.o CMakeFiles/parmetis.dir/ametis.c.o CMakeFiles/parmetis.dir/balancemylink.c.o CMakeFiles/parmetis.dir/comm.c.o CMakeFiles/parmetis.dir/csrmatch.c.o CMakeFiles/parmetis.dir/ctrl.c.o CMakeFiles/parmetis.dir/debug.c.o CMakeFiles/parmetis.dir/diffutil.c.o CMakeFiles/parmetis.dir/frename.c.o CMakeFiles/parmetis.dir/gkmetis.c.o CMakeFiles/parmetis.dir/gkmpi.c.o CMakeFiles/parmetis.dir/graph.c.o CMakeFiles/parmetis.dir/initbalance.c.o CMakeFiles/parmetis.dir/initmsection.c.o CMakeFiles/parmetis.dir/initpart.c.o CMakeFiles/parmetis.dir/kmetis.c.o CMakeFiles/parmetis.dir/kwayrefine.c.o CMakeFiles/parmetis.dir/match.c.o CMakeFiles/parmetis.dir/mdiffusion.c.o CMakeFiles/parmetis.dir/mesh.c.o CMakeFiles/parmetis.dir/mmetis.c.o CMakeFiles/parmetis.dir/move.c.o CMakeFiles/parmetis.dir/msetup.c.o CMakeFiles/parmetis.dir/node_refine.c.o CMakeFiles/parmetis.dir/ometis.c.o CMakeFiles/parmetis.dir/pspases.c.o CMakeFiles/parmetis.dir/redomylink.c.o CMakeFiles/parmetis.dir/remap.c.o CMakeFiles/parmetis.dir/renumber.c.o CMakeFiles/parmetis.dir/rmetis.c.o CMakeFiles/parmetis.dir/selectq.c.o CMakeFiles/parmetis.dir/serial.c.o CMakeFiles/parmetis.dir/stat.c.o CMakeFiles/parmetis.dir/timer.c.o CMakeFiles/parmetis.dir/util.c.o CMakeFiles/parmetis.dir/wave.c.o CMakeFiles/parmetis.dir/weird.c.o CMakeFiles/parmetis.dir/wspace.c.o CMakeFiles/parmetis.dir/xyzpart.c.o -L/Users/kongf/projects/petsc1/arch-darwin-c-opt/lib -Wl,-rpath,/Users/kongf/projects/petsc1/arch-darwin-c-opt/lib -lmetis [100%] Built target parmetis /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/cmake -E cmake_progress_start /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis/petsc-build/CMakeFiles 0/Users/kongf/projects/miniconda3/envs/moose-mpich/bin/cmake -S/Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis -B/Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis/petsc-build --check-build-system CMakeFiles/Makefile.cmake 0 /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/cmake -E cmake_progress_start /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis/petsc-build/CMakeFiles /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis/petsc-build/CMakeFiles/progress.marks /Library/Developer/CommandLineTools/usr/bin/make -f CMakeFiles/Makefile2 all /Library/Developer/CommandLineTools/usr/bin/make -f libparmetis/CMakeFiles/parmetis.dir/build.make libparmetis/CMakeFiles/parmetis.dir/depend cd /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis/petsc-build && /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/cmake -E cmake_depends "Unix Makefiles" /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis/libparmetis /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis/petsc-build /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis/petsc-build/libparmetis /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis/petsc-build/libparmetis/CMakeFiles/parmetis.dir/DependInfo.cmake --color= /Library/Developer/CommandLineTools/usr/bin/make -f libparmetis/CMakeFiles/parmetis.dir/build.make libparmetis/CMakeFiles/parmetis.dir/build make[2]: Nothing to be done for `libparmetis/CMakeFiles/parmetis.dir/build'. [100%] Built target parmetis /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/cmake -E cmake_progress_start /Users/kongf/projects/petsc1/arch-darwin-c-opt/externalpackages/git.parmetis/petsc-build/CMakeFiles 0 /Library/Developer/CommandLineTools/usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Nothing to be done for `preinstall'. Install the project... /Users/kongf/projects/miniconda3/envs/moose-mpich/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Up-to-date: /Users/kongf/projects/petsc1/arch-darwin-c-opt/include/parmetis.h -- Installing: /Users/kongf/projects/petsc1/arch-darwin-c-opt/lib/libparmetis.dylib********End of Output of running make on PARMETIS ******* Checking for library in Download PARMETIS: ['/Users/kongf/projects/petsc1/arch-darwin-c-opt/lib/libparmetis.a'] Contents: ['obj', 'bin', 'include', 'tests', 'lib', 'externalpackages', 'share'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [ParMETIS_V3_PartKway] in library ['/Users/kongf/projects/petsc1/arch-darwin-c-opt/lib/libparmetis.a'] ['/Users/kongf/projects/petsc1/arch-darwin-c-opt/lib/libmetis.a'] ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.sharedLibraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.scalarTypes -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.metis -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ParMETIS_V3_PartKway(); static void _check_ParMETIS_V3_PartKway() { ParMETIS_V3_PartKway(); } int main() { _check_ParMETIS_V3_PartKway();; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -Wl,-rpath,/Users/kongf/projects/petsc1/arch-darwin-c-opt/lib -L/Users/kongf/projects/petsc1/arch-darwin-c-opt/lib -lparmetis -Wl,-rpath,/Users/kongf/projects/petsc1/arch-darwin-c-opt/lib -L/Users/kongf/projects/petsc1/arch-darwin-c-opt/lib -lmetis -lc++ -ldl -lgcc_s.1 Defined "HAVE_LIBPARMETIS" to "1" Checking for optional headers [] in Download PARMETIS: ['/Users/kongf/projects/petsc1/arch-darwin-c-opt/include', '/Users/kongf/projects/miniconda3/envs/moose-mpich/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/Users/kongf/projects/petsc1/arch-darwin-c-opt/include', '/Users/kongf/projects/miniconda3/envs/moose-mpich/include'] Found header files [] in ['/Users/kongf/projects/petsc1/arch-darwin-c-opt/include', '/Users/kongf/projects/miniconda3/envs/moose-mpich/include'] Checking for headers ['parmetis.h'] in Download PARMETIS: ['/Users/kongf/projects/petsc1/arch-darwin-c-opt/include', '/Users/kongf/projects/miniconda3/envs/moose-mpich/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['parmetis.h'] in ['/Users/kongf/projects/petsc1/arch-darwin-c-opt/include', '/Users/kongf/projects/miniconda3/envs/moose-mpich/include'] Checking include with compiler flags var CPPFLAGS ['/Users/kongf/projects/petsc1/arch-darwin-c-opt/include', '/Users/kongf/projects/miniconda3/envs/moose-mpich/include', '/Users/kongf/projects/petsc1/arch-darwin-c-opt/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.metis -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/Users/kongf/projects/petsc1/arch-darwin-c-opt/include -I/Users/kongf/projects/miniconda3/envs/moose-mpich/include -I/Users/kongf/projects/petsc1/arch-darwin-c-opt/include /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Found header files ['parmetis.h'] in ['/Users/kongf/projects/petsc1/arch-darwin-c-opt/include', '/Users/kongf/projects/miniconda3/envs/moose-mpich/include'] Checking for functions [ParMETIS_ComputeVertexSeparator] in library ['/Users/kongf/projects/petsc1/arch-darwin-c-opt/lib/libparmetis.a'] ['/Users/kongf/projects/petsc1/arch-darwin-c-opt/lib/libmetis.a'] ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.sharedLibraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.scalarTypes -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.metis -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ParMETIS_ComputeVertexSeparator(); static void _check_ParMETIS_ComputeVertexSeparator() { ParMETIS_ComputeVertexSeparator(); } int main() { _check_ParMETIS_ComputeVertexSeparator();; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -Wl,-rpath,/Users/kongf/projects/petsc1/arch-darwin-c-opt/lib -L/Users/kongf/projects/petsc1/arch-darwin-c-opt/lib -lparmetis -Wl,-rpath,/Users/kongf/projects/petsc1/arch-darwin-c-opt/lib -L/Users/kongf/projects/petsc1/arch-darwin-c-opt/lib -lmetis -lc++ -ldl -lgcc_s.1 Defined "HAVE_LIBPARMETIS" to "1" ============================================================================================= TESTING: checkVersion from config.packages.parmetis(config/BuildSystem/config/package.py:1026) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "parmetis.h" ;petscpkgver(PARMETIS_MAJOR_VERSION.PARMETIS_MINOR_VERSION.PARMETIS_SUBMINOR_VERSION); Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.metis -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.parmetis -I/Users/kongf/projects/petsc1/arch-darwin-c-opt/include /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.parmetis/conftest.c For parmetis need <= 4.0.3 <= ============================================================================================= TESTING: checkSharedLibrary from config.packages.parmetis(config/BuildSystem/config/package.py:955) By default we don't care about checking if the library is shared child config.packages.parmetis 7.580726 ============================================================================================= TESTING: consistencyChecks from config.packages.Chaco(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Chaco(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.Chaco 0.001411 Executing: uname -s stdout: Darwin ============================================================================================= TESTING: consistencyChecks from config.packages.hdf5(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.hdf5(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.hdf5 0.006683 ============================================================================================= TESTING: consistencyChecks from config.packages.med(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.med(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.med 0.000950 ============================================================================================= TESTING: consistencyChecks from config.packages.cgns(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.cgns(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.cgns 0.000836 ============================================================================================= TESTING: consistencyChecks from config.packages.ascem-io(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ascem-io(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.ascem-io 0.000923 ============================================================================================= TESTING: consistencyChecks from config.packages.pflotran(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.pflotran(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.pflotran 0.000921 ============================================================================================= TESTING: consistencyChecks from config.packages.alquimia(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.alquimia(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.alquimia 0.000917 ============================================================================================= TESTING: consistencyChecks from config.packages.SAMRAI(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.SAMRAI(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.SAMRAI 0.000943 child config.packages.flibs 0.000019 ============================================================================================= TESTING: consistencyChecks from config.packages.pnetcdf(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.pnetcdf(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.pnetcdf 0.000923 ============================================================================================= TESTING: consistencyChecks from config.packages.netcdf(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.netcdf(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.netcdf 0.000906 ============================================================================================= TESTING: consistencyChecks from config.packages.exodusii(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.exodusii(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.exodusii 0.000916 ============================================================================================= TESTING: consistencyChecks from config.packages.fblaslapack(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.fblaslapack(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.fblaslapack(config/BuildSystem/config/packages/fblaslapack.py:20) ================================================================================== Checking for a functional fblaslapack Looking for FBLASLAPACK at git.fblaslapack, hg.fblaslapack or a directory starting with ['petsc-pkg-fblaslapack'] Found a copy of FBLASLAPACK in git.fblaslapack Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Executing: ['git', 'cat-file', '-e', 'v3.4.2-p3^{commit}'] Executing: ['git', 'rev-parse', 'v3.4.2-p3'] stdout: e8a03f57d64cf01d987d4b4ce9b961c24765747d Executing: ['git', '-c', 'user.name=petsc-configure', '-c', 'user.email=petsc@configure', 'stash'] stdout: No local changes to save Executing: ['git', 'clean', '-f', '-d', '-x'] stdout: Removing blas/caxpy.o Removing blas/ccopy.o Removing blas/cdotc.o Removing blas/cdotu.o Removing blas/cgbmv.o Removing blas/cgemm.o Removing blas/cgemv.o Removing blas/cgerc.o Removing blas/cgeru.o Removing blas/chbmv.o Removing blas/chemm.o Removing blas/chemv.o Removing blas/cher.o Removing blas/cher2.o Removing blas/cher2k.o Removing blas/cherk.o Removing blas/chpmv.o Removing blas/chpr.o Removing blas/chpr2.o Removing blas/crotg.o Removing blas/cscal.o Removing blas/csrot.o Removing blas/csscal.o Removing blas/cswap.o Removing blas/csymm.o Removing blas/csyr2k.o Removing blas/csyrk.o Removing blas/ctbmv.o Removing blas/ctbsv.o Removing blas/ctpmv.o Removing blas/ctpsv.o Removing blas/ctrmm.o Removing blas/ctrmv.o Removing blas/ctrsm.o Removing blas/ctrsv.o Removing blas/dasum.o Removing blas/daxpy.o Removing blas/dcabs1.o Removing blas/dcopy.o Removing blas/ddot.o Removing blas/dgbmv.o Removing blas/dgemm.o Removing blas/dgemv.o Removing blas/dger.o Removing blas/dnrm2.o Removing blas/drot.o Removing blas/drotg.o Removing blas/drotm.o Removing blas/drotmg.o Removing blas/dsbmv.o Removing blas/dscal.o Removing blas/dsdot.o Removing blas/dspmv.o Removing blas/dspr.o Removing blas/dspr2.o Removing blas/dswap.o Removing blas/dsymm.o Removing blas/dsymv.o Removing blas/dsyr.o Removing blas/dsyr2.o Removing blas/dsyr2k.o Removing blas/dsyrk.o Removing blas/dtbmv.o Removing blas/dtbsv.o Removing blas/dtpmv.o Removing blas/dtpsv.o Removing blas/dtrmm.o Removing blas/dtrmv.o Removing blas/dtrsm.o Removing blas/dtrsv.o Removing blas/dzasum.o Removing blas/dznrm2.o Removing blas/icamax.o Removing blas/idamax.o Removing blas/isamax.o Removing blas/izamax.o Removing blas/lsame.o Removing blas/sasum.o Removing blas/saxpy.o Removing blas/scabs1.o Removing blas/scasum.o Removing blas/scnrm2.o Removing blas/scopy.o Removing blas/sdot.o Removing blas/sdsdot.o Removing blas/sgbmv.o Removing blas/sgemm.o Removing blas/sgemv.o Removing blas/sger.o Removing blas/snrm2.o Removing blas/srot.o Removing blas/srotg.o Removing blas/srotm.o Removing blas/srotmg.o Removing blas/ssbmv.o Removing blas/sscal.o Removing blas/sspmv.o Removing blas/sspr.o Removing blas/sspr2.o Removing blas/sswap.o Removing blas/ssymm.o Removing blas/ssymv.o Removing blas/ssyr.o Removing blas/ssyr2.o Removing blas/ssyr2k.o Removing blas/ssyrk.o Removing blas/stbmv.o Removing blas/stbsv.o Removing blas/stpmv.o Removing blas/stpsv.o Removing blas/strmm.o Removing blas/strmv.o Removing blas/strsm.o Removing blas/strsv.o Removing blas/xerbla.o Removing blas/xerbla_array.o Removing blas/zaxpy.o Removing blas/zcopy.o Removing blas/zdotc.o Removing blas/zdotu.o Removing blas/zdrot.o Removing blas/zdscal.o Removing blas/zgbmv.o Removing blas/zgemm.o Removing blas/zgemv.o Removing blas/zgerc.o Removing blas/zgeru.o Removing blas/zhbmv.o Removing blas/zhemm.o Removing blas/zhemv.o Removing blas/zher.o Removing blas/zher2.o Removing blas/zher2k.o Removing blas/zherk.o Removing blas/zhpmv.o Removing blas/zhpr.o Removing blas/zhpr2.o Removing blas/zrotg.o Removing blas/zscal.o Removing blas/zswap.o Removing blas/zsymm.o Removing blas/zsyr2k.o Removing blas/zsyrk.o Removing blas/ztbmv.o Removing blas/ztbsv.o Removing blas/ztpmv.o Removing blas/ztpsv.o Removing blas/ztrmm.o Removing blas/ztrmv.o Removing blas/ztrsm.o Removing blas/ztrsv.o Removing lapack/cbbcsd.o Removing lapack/cbdsqr.o Removing lapack/cgbbrd.o Removing lapack/cgbcon.o Removing lapack/cgbequ.o Removing lapack/cgbequb.o Removing lapack/cgbrfs.o Removing lapack/cgbrfsx.o Removing lapack/cgbsv.o Removing lapack/cgbsvx.o Removing lapack/cgbsvxx.o Removing lapack/cgbtf2.o Removing lapack/cgbtrf.o Removing lapack/cgbtrs.o Removing lapack/cgebak.o Removing lapack/cgebal.o Removing lapack/cgebd2.o Removing lapack/cgebrd.o Removing lapack/cgecon.o Removing lapack/cgeequ.o Removing lapack/cgeequb.o Removing lapack/cgees.o Removing lapack/cgeesx.o Removing lapack/cgeev.o Removing lapack/cgeevx.o Removing lapack/cgegs.o Removing lapack/cgegv.o Removing lapack/cgehd2.o Removing lapack/cgehrd.o Removing lapack/cgelq2.o Removing lapack/cgelqf.o Removing lapack/cgels.o Removing lapack/cgelsd.o Removing lapack/cgelss.o Removing lapack/cgelsx.o Removing lapack/cgelsy.o Removing lapack/cgemqrt.o Removing lapack/cgeql2.o Removing lapack/cgeqlf.o Removing lapack/cgeqp3.o Removing lapack/cgeqpf.o Removing lapack/cgeqr2.o Removing lapack/cgeqr2p.o Removing lapack/cgeqrf.o Removing lapack/cgeqrfp.o Removing lapack/cgeqrt.o Removing lapack/cgeqrt2.o Removing lapack/cgeqrt3.o Removing lapack/cgerfs.o Removing lapack/cgerfsx.o Removing lapack/cgerq2.o Removing lapack/cgerqf.o Removing lapack/cgesc2.o Removing lapack/cgesdd.o Removing lapack/cgesv.o Removing lapack/cgesvd.o Removing lapack/cgesvx.o Removing lapack/cgesvxx.o Removing lapack/cgetc2.o Removing lapack/cgetf2.o Removing lapack/cgetrf.o Removing lapack/cgetri.o Removing lapack/cgetrs.o Removing lapack/cggbak.o Removing lapack/cggbal.o Removing lapack/cgges.o Removing lapack/cggesx.o Removing lapack/cggev.o Removing lapack/cggevx.o Removing lapack/cggglm.o Removing lapack/cgghrd.o Removing lapack/cgglse.o Removing lapack/cggqrf.o Removing lapack/cggrqf.o Removing lapack/cggsvd.o Removing lapack/cggsvp.o Removing lapack/cgtcon.o Removing lapack/cgtrfs.o Removing lapack/cgtsv.o Removing lapack/cgtsvx.o Removing lapack/cgttrf.o Removing lapack/cgttrs.o Removing lapack/cgtts2.o Removing lapack/chbev.o Removing lapack/chbevd.o Removing lapack/chbevx.o Removing lapack/chbgst.o Removing lapack/chbgv.o Removing lapack/chbgvd.o Removing lapack/chbgvx.o Removing lapack/chbtrd.o Removing lapack/checon.o Removing lapack/checon_rook.o Removing lapack/cheequb.o Removing lapack/cheev.o Removing lapack/cheevd.o Removing lapack/cheevr.o Removing lapack/cheevx.o Removing lapack/chegs2.o Removing lapack/chegst.o Removing lapack/chegv.o Removing lapack/chegvd.o Removing lapack/chegvx.o Removing lapack/cherfs.o Removing lapack/cherfsx.o Removing lapack/chesv.o Removing lapack/chesv_rook.o Removing lapack/chesvx.o Removing lapack/chesvxx.o Removing lapack/cheswapr.o Removing lapack/chetd2.o Removing lapack/chetf2.o Removing lapack/chetf2_rook.o Removing lapack/chetrd.o Removing lapack/chetrf.o Removing lapack/chetrf_rook.o Removing lapack/chetri.o Removing lapack/chetri2.o Removing lapack/chetri2x.o Removing lapack/chetri_rook.o Removing lapack/chetrs.o Removing lapack/chetrs2.o Removing lapack/chetrs_rook.o Removing lapack/chfrk.o Removing lapack/chgeqz.o Removing lapack/chla_transtype.o Removing lapack/chpcon.o Removing lapack/chpev.o Removing lapack/chpevd.o Removing lapack/chpevx.o Removing lapack/chpgst.o Removing lapack/chpgv.o Removing lapack/chpgvd.o Removing lapack/chpgvx.o Removing lapack/chprfs.o Removing lapack/chpsv.o Removing lapack/chpsvx.o Removing lapack/chptrd.o Removing lapack/chptrf.o Removing lapack/chptri.o Removing lapack/chptrs.o Removing lapack/chsein.o Removing lapack/chseqr.o Removing lapack/cla_gbamv.o Removing lapack/cla_gbrcond_c.o Removing lapack/cla_gbrcond_x.o Removing lapack/cla_gbrfsx_extended.o Removing lapack/cla_gbrpvgrw.o Removing lapack/cla_geamv.o Removing lapack/cla_gercond_c.o Removing lapack/cla_gercond_x.o Removing lapack/cla_gerfsx_extended.o Removing lapack/cla_gerpvgrw.o Removing lapack/cla_heamv.o Removing lapack/cla_hercond_c.o Removing lapack/cla_hercond_x.o Removing lapack/cla_herfsx_extended.o Removing lapack/cla_herpvgrw.o Removing lapack/cla_lin_berr.o Removing lapack/cla_porcond_c.o Removing lapack/cla_porcond_x.o Removing lapack/cla_porfsx_extended.o Removing lapack/cla_porpvgrw.o Removing lapack/cla_syamv.o Removing lapack/cla_syrcond_c.o Removing lapack/cla_syrcond_x.o Removing lapack/cla_syrfsx_extended.o Removing lapack/cla_syrpvgrw.o Removing lapack/cla_wwaddw.o Removing lapack/clabrd.o Removing lapack/clacgv.o Removing lapack/clacn2.o Removing lapack/clacon.o Removing lapack/clacp2.o Removing lapack/clacpy.o Removing lapack/clacrm.o Removing lapack/clacrt.o Removing lapack/cladiv.o Removing lapack/claed0.o Removing lapack/claed7.o Removing lapack/claed8.o Removing lapack/claein.o Removing lapack/claesy.o Removing lapack/claev2.o Removing lapack/clag2z.o Removing lapack/clags2.o Removing lapack/clagtm.o Removing lapack/clahef.o Removing lapack/clahef_rook.o Removing lapack/clahqr.o Removing lapack/clahr2.o Removing lapack/clahrd.o Removing lapack/claic1.o Removing lapack/clals0.o Removing lapack/clalsa.o Removing lapack/clalsd.o Removing lapack/clangb.o Removing lapack/clange.o Removing lapack/clangt.o Removing lapack/clanhb.o Removing lapack/clanhe.o Removing lapack/clanhf.o Removing lapack/clanhp.o Removing lapack/clanhs.o Removing lapack/clanht.o Removing lapack/clansb.o Removing lapack/clansp.o Removing lapack/clansy.o Removing lapack/clantb.o Removing lapack/clantp.o Removing lapack/clantr.o Removing lapack/clapll.o Removing lapack/clapmr.o Removing lapack/clapmt.o Removing lapack/claqgb.o Removing lapack/claqge.o Removing lapack/claqhb.o Removing lapack/claqhe.o Removing lapack/claqhp.o Removing lapack/claqp2.o Removing lapack/claqps.o Removing lapack/claqr0.o Removing lapack/claqr1.o Removing lapack/claqr2.o Removing lapack/claqr3.o Removing lapack/claqr4.o Removing lapack/claqr5.o Removing lapack/claqsb.o Removing lapack/claqsp.o Removing lapack/claqsy.o Removing lapack/clar1v.o Removing lapack/clar2v.o Removing lapack/clarcm.o Removing lapack/clarf.o Removing lapack/clarfb.o Removing lapack/clarfg.o Removing lapack/clarfgp.o Removing lapack/clarft.o Removing lapack/clarfx.o Removing lapack/clargv.o Removing lapack/clarnv.o Removing lapack/clarrv.o Removing lapack/clarscl2.o Removing lapack/clartg.o Removing lapack/clartv.o Removing lapack/clarz.o Removing lapack/clarzb.o Removing lapack/clarzt.o Removing lapack/clascl.o Removing lapack/clascl2.o Removing lapack/claset.o Removing lapack/clasr.o Removing lapack/classq.o Removing lapack/claswp.o Removing lapack/clasyf.o Removing lapack/clasyf_rook.o Removing lapack/clatbs.o Removing lapack/clatdf.o Removing lapack/clatps.o Removing lapack/clatrd.o Removing lapack/clatrs.o Removing lapack/clatrz.o Removing lapack/clatzm.o Removing lapack/clauu2.o Removing lapack/clauum.o Removing lapack/cpbcon.o Removing lapack/cpbequ.o Removing lapack/cpbrfs.o Removing lapack/cpbstf.o Removing lapack/cpbsv.o Removing lapack/cpbsvx.o Removing lapack/cpbtf2.o Removing lapack/cpbtrf.o Removing lapack/cpbtrs.o Removing lapack/cpftrf.o Removing lapack/cpftri.o Removing lapack/cpftrs.o Removing lapack/cpocon.o Removing lapack/cpoequ.o Removing lapack/cpoequb.o Removing lapack/cporfs.o Removing lapack/cporfsx.o Removing lapack/cposv.o Removing lapack/cposvx.o Removing lapack/cposvxx.o Removing lapack/cpotf2.o Removing lapack/cpotrf.o Removing lapack/cpotri.o Removing lapack/cpotrs.o Removing lapack/cppcon.o Removing lapack/cppequ.o Removing lapack/cpprfs.o Removing lapack/cppsv.o Removing lapack/cppsvx.o Removing lapack/cpptrf.o Removing lapack/cpptri.o Removing lapack/cpptrs.o Removing lapack/cpstf2.o Removing lapack/cpstrf.o Removing lapack/cptcon.o Removing lapack/cpteqr.o Removing lapack/cptrfs.o Removing lapack/cptsv.o Removing lapack/cptsvx.o Removing lapack/cpttrf.o Removing lapack/cpttrs.o Removing lapack/cptts2.o Removing lapack/crot.o Removing lapack/cspcon.o Removing lapack/cspmv.o Removing lapack/cspr.o Removing lapack/csprfs.o Removing lapack/cspsv.o Removing lapack/cspsvx.o Removing lapack/csptrf.o Removing lapack/csptri.o Removing lapack/csptrs.o Removing lapack/csrscl.o Removing lapack/cstedc.o Removing lapack/cstegr.o Removing lapack/cstein.o Removing lapack/cstemr.o Removing lapack/csteqr.o Removing lapack/csycon.o Removing lapack/csycon_rook.o Removing lapack/csyconv.o Removing lapack/csyequb.o Removing lapack/csymv.o Removing lapack/csyr.o Removing lapack/csyrfs.o Removing lapack/csyrfsx.o Removing lapack/csysv.o Removing lapack/csysv_rook.o Removing lapack/csysvx.o Removing lapack/csysvxx.o Removing lapack/csyswapr.o Removing lapack/csytf2.o Removing lapack/csytf2_rook.o Removing lapack/csytrf.o Removing lapack/csytrf_rook.o Removing lapack/csytri.o Removing lapack/csytri2.o Removing lapack/csytri2x.o Removing lapack/csytri_rook.o Removing lapack/csytrs.o Removing lapack/csytrs2.o Removing lapack/csytrs_rook.o Removing lapack/ctbcon.o Removing lapack/ctbrfs.o Removing lapack/ctbtrs.o Removing lapack/ctfsm.o Removing lapack/ctftri.o Removing lapack/ctfttp.o Removing lapack/ctfttr.o Removing lapack/ctgevc.o Removing lapack/ctgex2.o Removing lapack/ctgexc.o Removing lapack/ctgsen.o Removing lapack/ctgsja.o Removing lapack/ctgsna.o Removing lapack/ctgsy2.o Removing lapack/ctgsyl.o Removing lapack/ctpcon.o Removing lapack/ctpmqrt.o Removing lapack/ctpqrt.o Removing lapack/ctpqrt2.o Removing lapack/ctprfb.o Removing lapack/ctprfs.o Removing lapack/ctptri.o Removing lapack/ctptrs.o Removing lapack/ctpttf.o Removing lapack/ctpttr.o Removing lapack/ctrcon.o Removing lapack/ctrevc.o Removing lapack/ctrexc.o Removing lapack/ctrrfs.o Removing lapack/ctrsen.o Removing lapack/ctrsna.o Removing lapack/ctrsyl.o Removing lapack/ctrti2.o Removing lapack/ctrtri.o Removing lapack/ctrtrs.o Removing lapack/ctrttf.o Removing lapack/ctrttp.o Removing lapack/ctzrqf.o Removing lapack/ctzrzf.o Removing lapack/cunbdb.o Removing lapack/cunbdb1.o Removing lapack/cunbdb2.o Removing lapack/cunbdb3.o Removing lapack/cunbdb4.o Removing lapack/cunbdb5.o Removing lapack/cunbdb6.o Removing lapack/cuncsd.o Removing lapack/cuncsd2by1.o Removing lapack/cung2l.o Removing lapack/cung2r.o Removing lapack/cungbr.o Removing lapack/cunghr.o Removing lapack/cungl2.o Removing lapack/cunglq.o Removing lapack/cungql.o Removing lapack/cungqr.o Removing lapack/cungr2.o Removing lapack/cungrq.o Removing lapack/cungtr.o Removing lapack/cunm2l.o Removing lapack/cunm2r.o Removing lapack/cunmbr.o Removing lapack/cunmhr.o Removing lapack/cunml2.o Removing lapack/cunmlq.o Removing lapack/cunmql.o Removing lapack/cunmqr.o Removing lapack/cunmr2.o Removing lapack/cunmr3.o Removing lapack/cunmrq.o Removing lapack/cunmrz.o Removing lapack/cunmtr.o Removing lapack/cupgtr.o Removing lapack/cupmtr.o Removing lapack/dbbcsd.o Removing lapack/dbdsdc.o Removing lapack/dbdsqr.o Removing lapack/ddisna.o Removing lapack/dgbbrd.o Removing lapack/dgbcon.o Removing lapack/dgbequ.o Removing lapack/dgbequb.o Removing lapack/dgbrfs.o Removing lapack/dgbrfsx.o Removing lapack/dgbsv.o Removing lapack/dgbsvx.o Removing lapack/dgbsvxx.o Removing lapack/dgbtf2.o Removing lapack/dgbtrf.o Removing lapack/dgbtrs.o Removing lapack/dgebak.o Removing lapack/dgebal.o Removing lapack/dgebd2.o Removing lapack/dgebrd.o Removing lapack/dgecon.o Removing lapack/dgeequ.o Removing lapack/dgeequb.o Removing lapack/dgees.o Removing lapack/dgeesx.o Removing lapack/dgeev.o Removing lapack/dgeevx.o Removing lapack/dgegs.o Removing lapack/dgegv.o Removing lapack/dgehd2.o Removing lapack/dgehrd.o Removing lapack/dgejsv.o Removing lapack/dgelq2.o Removing lapack/dgelqf.o Removing lapack/dgels.o Removing lapack/dgelsd.o Removing lapack/dgelss.o Removing lapack/dgelsx.o Removing lapack/dgelsy.o Removing lapack/dgemqrt.o Removing lapack/dgeql2.o Removing lapack/dgeqlf.o Removing lapack/dgeqp3.o Removing lapack/dgeqpf.o Removing lapack/dgeqr2.o Removing lapack/dgeqr2p.o Removing lapack/dgeqrf.o Removing lapack/dgeqrfp.o Removing lapack/dgeqrt.o Removing lapack/dgeqrt2.o Removing lapack/dgeqrt3.o Removing lapack/dgerfs.o Removing lapack/dgerfsx.o Removing lapack/dgerq2.o Removing lapack/dgerqf.o Removing lapack/dgesc2.o Removing lapack/dgesdd.o Removing lapack/dgesv.o Removing lapack/dgesvd.o Removing lapack/dgesvj.o Removing lapack/dgesvx.o Removing lapack/dgesvxx.o Removing lapack/dgetc2.o Removing lapack/dgetf2.o Removing lapack/dgetrf.o Removing lapack/dgetri.o Removing lapack/dgetrs.o Removing lapack/dggbak.o Removing lapack/dggbal.o Removing lapack/dgges.o Removing lapack/dggesx.o Removing lapack/dggev.o Removing lapack/dggevx.o Removing lapack/dggglm.o Removing lapack/dgghrd.o Removing lapack/dgglse.o Removing lapack/dggqrf.o Removing lapack/dggrqf.o Removing lapack/dggsvd.o Removing lapack/dggsvp.o Removing lapack/dgsvj0.o Removing lapack/dgsvj1.o Removing lapack/dgtcon.o Removing lapack/dgtrfs.o Removing lapack/dgtsv.o Removing lapack/dgtsvx.o Removing lapack/dgttrf.o Removing lapack/dgttrs.o Removing lapack/dgtts2.o Removing lapack/dhgeqz.o Removing lapack/dhsein.o Removing lapack/dhseqr.o Removing lapack/disnan.o Removing lapack/dla_gbamv.o Removing lapack/dla_gbrcond.o Removing lapack/dla_gbrfsx_extended.o Removing lapack/dla_gbrpvgrw.o Removing lapack/dla_geamv.o Removing lapack/dla_gercond.o Removing lapack/dla_gerfsx_extended.o Removing lapack/dla_gerpvgrw.o Removing lapack/dla_lin_berr.o Removing lapack/dla_porcond.o Removing lapack/dla_porfsx_extended.o Removing lapack/dla_porpvgrw.o Removing lapack/dla_syamv.o Removing lapack/dla_syrcond.o Removing lapack/dla_syrfsx_extended.o Removing lapack/dla_syrpvgrw.o Removing lapack/dla_wwaddw.o Removing lapack/dlabad.o Removing lapack/dlabrd.o Removing lapack/dlacn2.o Removing lapack/dlacon.o Removing lapack/dlacpy.o Removing lapack/dladiv.o Removing lapack/dlae2.o Removing lapack/dlaebz.o Removing lapack/dlaed0.o Removing lapack/dlaed1.o Removing lapack/dlaed2.o Removing lapack/dlaed3.o Removing lapack/dlaed4.o Removing lapack/dlaed5.o Removing lapack/dlaed6.o Removing lapack/dlaed7.o Removing lapack/dlaed8.o Removing lapack/dlaed9.o Removing lapack/dlaeda.o Removing lapack/dlaein.o Removing lapack/dlaev2.o Removing lapack/dlaexc.o Removing lapack/dlag2.o Removing lapack/dlag2s.o Removing lapack/dlags2.o Removing lapack/dlagtf.o Removing lapack/dlagtm.o Removing lapack/dlagts.o Removing lapack/dlagv2.o Removing lapack/dlahqr.o Removing lapack/dlahr2.o Removing lapack/dlahrd.o Removing lapack/dlaic1.o Removing lapack/dlaisnan.o Removing lapack/dlaln2.o Removing lapack/dlals0.o Removing lapack/dlalsa.o Removing lapack/dlalsd.o Removing lapack/dlamrg.o Removing lapack/dlaneg.o Removing lapack/dlangb.o Removing lapack/dlange.o Removing lapack/dlangt.o Removing lapack/dlanhs.o Removing lapack/dlansb.o Removing lapack/dlansf.o Removing lapack/dlansp.o Removing lapack/dlanst.o Removing lapack/dlansy.o Removing lapack/dlantb.o Removing lapack/dlantp.o Removing lapack/dlantr.o Removing lapack/dlanv2.o Removing lapack/dlapll.o Removing lapack/dlapmr.o Removing lapack/dlapmt.o Removing lapack/dlapy2.o Removing lapack/dlapy3.o Removing lapack/dlaqgb.o Removing lapack/dlaqge.o Removing lapack/dlaqp2.o Removing lapack/dlaqps.o Removing lapack/dlaqr0.o Removing lapack/dlaqr1.o Removing lapack/dlaqr2.o Removing lapack/dlaqr3.o Removing lapack/dlaqr4.o Removing lapack/dlaqr5.o Removing lapack/dlaqsb.o Removing lapack/dlaqsp.o Removing lapack/dlaqsy.o Removing lapack/dlaqtr.o Removing lapack/dlar1v.o Removing lapack/dlar2v.o Removing lapack/dlarf.o Removing lapack/dlarfb.o Removing lapack/dlarfg.o Removing lapack/dlarfgp.o Removing lapack/dlarft.o Removing lapack/dlarfx.o Removing lapack/dlargv.o Removing lapack/dlarnv.o Removing lapack/dlarra.o Removing lapack/dlarrb.o Removing lapack/dlarrc.o Removing lapack/dlarrd.o Removing lapack/dlarre.o Removing lapack/dlarrf.o Removing lapack/dlarrj.o Removing lapack/dlarrk.o Removing lapack/dlarrr.o Removing lapack/dlarrv.o Removing lapack/dlarscl2.o Removing lapack/dlartg.o Removing lapack/dlartgp.o Removing lapack/dlartgs.o Removing lapack/dlartv.o Removing lapack/dlaruv.o Removing lapack/dlarz.o Removing lapack/dlarzb.o Removing lapack/dlarzt.o Removing lapack/dlas2.o Removing lapack/dlascl.o Removing lapack/dlascl2.o Removing lapack/dlasd0.o Removing lapack/dlasd1.o Removing lapack/dlasd2.o Removing lapack/dlasd3.o Removing lapack/dlasd4.o Removing lapack/dlasd5.o Removing lapack/dlasd6.o Removing lapack/dlasd7.o Removing lapack/dlasd8.o Removing lapack/dlasda.o Removing lapack/dlasdq.o Removing lapack/dlasdt.o Removing lapack/dlaset.o Removing lapack/dlasq1.o Removing lapack/dlasq2.o Removing lapack/dlasq3.o Removing lapack/dlasq4.o Removing lapack/dlasq5.o Removing lapack/dlasq6.o Removing lapack/dlasr.o Removing lapack/dlasrt.o Removing lapack/dlassq.o Removing lapack/dlasv2.o Removing lapack/dlaswp.o Removing lapack/dlasy2.o Removing lapack/dlasyf.o Removing lapack/dlasyf_rook.o Removing lapack/dlat2s.o Removing lapack/dlatbs.o Removing lapack/dlatdf.o Removing lapack/dlatps.o Removing lapack/dlatrd.o Removing lapack/dlatrs.o Removing lapack/dlatrz.o Removing lapack/dlatzm.o Removing lapack/dlauu2.o Removing lapack/dlauum.o Removing lapack/dlazq3.o Removing lapack/dlazq4.o Removing lapack/dopgtr.o Removing lapack/dopmtr.o Removing lapack/dorbdb.o Removing lapack/dorbdb1.o Removing lapack/dorbdb2.o Removing lapack/dorbdb3.o Removing lapack/dorbdb4.o Removing lapack/dorbdb5.o Removing lapack/dorbdb6.o Removing lapack/dorcsd.o Removing lapack/dorcsd2by1.o Removing lapack/dorg2l.o Removing lapack/dorg2r.o Removing lapack/dorgbr.o Removing lapack/dorghr.o Removing lapack/dorgl2.o Removing lapack/dorglq.o Removing lapack/dorgql.o Removing lapack/dorgqr.o Removing lapack/dorgr2.o Removing lapack/dorgrq.o Removing lapack/dorgtr.o Removing lapack/dorm2l.o Removing lapack/dorm2r.o Removing lapack/dormbr.o Removing lapack/dormhr.o Removing lapack/dorml2.o Removing lapack/dormlq.o Removing lapack/dormql.o Removing lapack/dormqr.o Removing lapack/dormr2.o Removing lapack/dormr3.o Removing lapack/dormrq.o Removing lapack/dormrz.o Removing lapack/dormtr.o Removing lapack/dpbcon.o Removing lapack/dpbequ.o Removing lapack/dpbrfs.o Removing lapack/dpbstf.o Removing lapack/dpbsv.o Removing lapack/dpbsvx.o Removing lapack/dpbtf2.o Removing lapack/dpbtrf.o Removing lapack/dpbtrs.o Removing lapack/dpftrf.o Removing lapack/dpftri.o Removing lapack/dpftrs.o Removing lapack/dpocon.o Removing lapack/dpoequ.o Removing lapack/dpoequb.o Removing lapack/dporfs.o Removing lapack/dporfsx.o Removing lapack/dposv.o Removing lapack/dposvx.o Removing lapack/dposvxx.o Removing lapack/dpotf2.o Removing lapack/dpotrf.o Removing lapack/dpotri.o Removing lapack/dpotrs.o Removing lapack/dppcon.o Removing lapack/dppequ.o Removing lapack/dpprfs.o Removing lapack/dppsv.o Removing lapack/dppsvx.o Removing lapack/dpptrf.o Removing lapack/dpptri.o Removing lapack/dpptrs.o Removing lapack/dpstf2.o Removing lapack/dpstrf.o Removing lapack/dptcon.o Removing lapack/dpteqr.o Removing lapack/dptrfs.o Removing lapack/dptsv.o Removing lapack/dptsvx.o Removing lapack/dpttrf.o Removing lapack/dpttrs.o Removing lapack/dptts2.o Removing lapack/drscl.o Removing lapack/dsbev.o Removing lapack/dsbevd.o Removing lapack/dsbevx.o Removing lapack/dsbgst.o Removing lapack/dsbgv.o Removing lapack/dsbgvd.o Removing lapack/dsbgvx.o Removing lapack/dsbtrd.o Removing lapack/dsfrk.o Removing lapack/dsgesv.o Removing lapack/dspcon.o Removing lapack/dspev.o Removing lapack/dspevd.o Removing lapack/dspevx.o Removing lapack/dspgst.o Removing lapack/dspgv.o Removing lapack/dspgvd.o Removing lapack/dspgvx.o Removing lapack/dsposv.o Removing lapack/dsprfs.o Removing lapack/dspsv.o Removing lapack/dspsvx.o Removing lapack/dsptrd.o Removing lapack/dsptrf.o Removing lapack/dsptri.o Removing lapack/dsptrs.o Removing lapack/dstebz.o Removing lapack/dstedc.o Removing lapack/dstegr.o Removing lapack/dstein.o Removing lapack/dstemr.o Removing lapack/dsteqr.o Removing lapack/dsterf.o Removing lapack/dstev.o Removing lapack/dstevd.o Removing lapack/dstevr.o Removing lapack/dstevx.o Removing lapack/dsycon.o Removing lapack/dsycon_rook.o Removing lapack/dsyconv.o Removing lapack/dsyequb.o Removing lapack/dsyev.o Removing lapack/dsyevd.o Removing lapack/dsyevr.o Removing lapack/dsyevx.o Removing lapack/dsygs2.o Removing lapack/dsygst.o Removing lapack/dsygv.o Removing lapack/dsygvd.o Removing lapack/dsygvx.o Removing lapack/dsyrfs.o Removing lapack/dsyrfsx.o Removing lapack/dsysv.o Removing lapack/dsysv_rook.o Removing lapack/dsysvx.o Removing lapack/dsysvxx.o Removing lapack/dsyswapr.o Removing lapack/dsytd2.o Removing lapack/dsytf2.o Removing lapack/dsytf2_rook.o Removing lapack/dsytrd.o Removing lapack/dsytrf.o Removing lapack/dsytrf_rook.o Removing lapack/dsytri.o Removing lapack/dsytri2.o Removing lapack/dsytri2x.o Removing lapack/dsytri_rook.o Removing lapack/dsytrs.o Removing lapack/dsytrs2.o Removing lapack/dsytrs_rook.o Removing lapack/dtbcon.o Removing lapack/dtbrfs.o Removing lapack/dtbtrs.o Removing lapack/dtfsm.o Removing lapack/dtftri.o Removing lapack/dtfttp.o Removing lapack/dtfttr.o Removing lapack/dtgevc.o Removing lapack/dtgex2.o Removing lapack/dtgexc.o Removing lapack/dtgsen.o Removing lapack/dtgsja.o Removing lapack/dtgsna.o Removing lapack/dtgsy2.o Removing lapack/dtgsyl.o Removing lapack/dtpcon.o Removing lapack/dtpmqrt.o Removing lapack/dtpqrt.o Removing lapack/dtpqrt2.o Removing lapack/dtprfb.o Removing lapack/dtprfs.o Removing lapack/dtptri.o Removing lapack/dtptrs.o Removing lapack/dtpttf.o Removing lapack/dtpttr.o Removing lapack/dtrcon.o Removing lapack/dtrevc.o Removing lapack/dtrexc.o Removing lapack/dtrrfs.o Removing lapack/dtrsen.o Removing lapack/dtrsna.o Removing lapack/dtrsyl.o Removing lapack/dtrti2.o Removing lapack/dtrtri.o Removing lapack/dtrtrs.o Removing lapack/dtrttf.o Removing lapack/dtrttp.o Removing lapack/dtzrqf.o Removing lapack/dtzrzf.o Removing lapack/dzsum1.o Removing lapack/icmax1.o Removing lapack/ieeeck.o Removing lapack/ilaclc.o Removing lapack/ilaclr.o Removing lapack/iladiag.o Removing lapack/iladlc.o Removing lapack/iladlr.o Removing lapack/ilaenv.o Removing lapack/ilaprec.o Removing lapack/ilaslc.o Removing lapack/ilaslr.o Removing lapack/ilatrans.o Removing lapack/ilauplo.o Removing lapack/ilaver.o Removing lapack/ilazlc.o Removing lapack/ilazlr.o Removing lapack/iparmq.o Removing lapack/izmax1.o Removing lapack/lsamen.o Removing lapack/sbbcsd.o Removing lapack/sbdsdc.o Removing lapack/sbdsqr.o Removing lapack/scsum1.o Removing lapack/sdisna.o Removing lapack/sgbbrd.o Removing lapack/sgbcon.o Removing lapack/sgbequ.o Removing lapack/sgbequb.o Removing lapack/sgbrfs.o Removing lapack/sgbrfsx.o Removing lapack/sgbsv.o Removing lapack/sgbsvx.o Removing lapack/sgbsvxx.o Removing lapack/sgbtf2.o Removing lapack/sgbtrf.o Removing lapack/sgbtrs.o Removing lapack/sgebak.o Removing lapack/sgebal.o Removing lapack/sgebd2.o Removing lapack/sgebrd.o Removing lapack/sgecon.o Removing lapack/sgeequ.o Removing lapack/sgeequb.o Removing lapack/sgees.o Removing lapack/sgeesx.o Removing lapack/sgeev.o Removing lapack/sgeevx.o Removing lapack/sgegs.o Removing lapack/sgegv.o Removing lapack/sgehd2.o Removing lapack/sgehrd.o Removing lapack/sgejsv.o Removing lapack/sgelq2.o Removing lapack/sgelqf.o Removing lapack/sgels.o Removing lapack/sgelsd.o Removing lapack/sgelss.o Removing lapack/sgelsx.o Removing lapack/sgelsy.o Removing lapack/sgemqrt.o Removing lapack/sgeql2.o Removing lapack/sgeqlf.o Removing lapack/sgeqp3.o Removing lapack/sgeqpf.o Removing lapack/sgeqr2.o Removing lapack/sgeqr2p.o Removing lapack/sgeqrf.o Removing lapack/sgeqrfp.o Removing lapack/sgeqrt.o Removing lapack/sgeqrt2.o Removing lapack/sgeqrt3.o Removing lapack/sgerfs.o Removing lapack/sgerfsx.o Removing lapack/sgerq2.o Removing lapack/sgerqf.o Removing lapack/sgesc2.o Removing lapack/sgesdd.o Removing lapack/sgesv.o Removing lapack/sgesvd.o Removing lapack/sgesvj.o Removing lapack/sgesvx.o Removing lapack/sgesvxx.o Removing lapack/sgetc2.o Removing lapack/sgetf2.o Removing lapack/sgetrf.o Removing lapack/sgetri.o Removing lapack/sgetrs.o Removing lapack/sggbak.o Removing lapack/sggbal.o Removing lapack/sgges.o Removing lapack/sggesx.o Removing lapack/sggev.o Removing lapack/sggevx.o Removing lapack/sggglm.o Removing lapack/sgghrd.o Removing lapack/sgglse.o Removing lapack/sggqrf.o Removing lapack/sggrqf.o Removing lapack/sggsvd.o Removing lapack/sggsvp.o Removing lapack/sgsvj0.o Removing lapack/sgsvj1.o Removing lapack/sgtcon.o Removing lapack/sgtrfs.o Removing lapack/sgtsv.o Removing lapack/sgtsvx.o Removing lapack/sgttrf.o Removing lapack/sgttrs.o Removing lapack/sgtts2.o Removing lapack/shgeqz.o Removing lapack/shsein.o Removing lapack/shseqr.o Removing lapack/sisnan.o Removing lapack/sla_gbamv.o Removing lapack/sla_gbrcond.o Removing lapack/sla_gbrfsx_extended.o Removing lapack/sla_gbrpvgrw.o Removing lapack/sla_geamv.o Removing lapack/sla_gercond.o Removing lapack/sla_gerfsx_extended.o Removing lapack/sla_gerpvgrw.o Removing lapack/sla_lin_berr.o Removing lapack/sla_porcond.o Removing lapack/sla_porfsx_extended.o Removing lapack/sla_porpvgrw.o Removing lapack/sla_syamv.o Removing lapack/sla_syrcond.o Removing lapack/sla_syrfsx_extended.o Removing lapack/sla_syrpvgrw.o Removing lapack/sla_wwaddw.o Removing lapack/slabad.o Removing lapack/slabrd.o Removing lapack/slacn2.o Removing lapack/slacon.o Removing lapack/slacpy.o Removing lapack/sladiv.o Removing lapack/slae2.o Removing lapack/slaebz.o Removing lapack/slaed0.o Removing lapack/slaed1.o Removing lapack/slaed2.o Removing lapack/slaed3.o Removing lapack/slaed4.o Removing lapack/slaed5.o Removing lapack/slaed6.o Removing lapack/slaed7.o Removing lapack/slaed8.o Removing lapack/slaed9.o Removing lapack/slaeda.o Removing lapack/slaein.o Removing lapack/slaev2.o Removing lapack/slaexc.o Removing lapack/slag2.o Removing lapack/slag2d.o Removing lapack/slags2.o Removing lapack/slagtf.o Removing lapack/slagtm.o Removing lapack/slagts.o Removing lapack/slagv2.o Removing lapack/slahqr.o Removing lapack/slahr2.o Removing lapack/slahrd.o Removing lapack/slaic1.o Removing lapack/slaisnan.o Removing lapack/slaln2.o Removing lapack/slals0.o Removing lapack/slalsa.o Removing lapack/slalsd.o Removing lapack/slamrg.o Removing lapack/slaneg.o Removing lapack/slangb.o Removing lapack/slange.o Removing lapack/slangt.o Removing lapack/slanhs.o Removing lapack/slansb.o Removing lapack/slansf.o Removing lapack/slansp.o Removing lapack/slanst.o Removing lapack/slansy.o Removing lapack/slantb.o Removing lapack/slantp.o Removing lapack/slantr.o Removing lapack/slanv2.o Removing lapack/slapll.o Removing lapack/slapmr.o Removing lapack/slapmt.o Removing lapack/slapy2.o Removing lapack/slapy3.o Removing lapack/slaqgb.o Removing lapack/slaqge.o Removing lapack/slaqp2.o Removing lapack/slaqps.o Removing lapack/slaqr0.o Removing lapack/slaqr1.o Removing lapack/slaqr2.o Removing lapack/slaqr3.o Removing lapack/slaqr4.o Removing lapack/slaqr5.o Removing lapack/slaqsb.o Removing lapack/slaqsp.o Removing lapack/slaqsy.o Removing lapack/slaqtr.o Removing lapack/slar1v.o Removing lapack/slar2v.o Removing lapack/slarf.o Removing lapack/slarfb.o Removing lapack/slarfg.o Removing lapack/slarfgp.o Removing lapack/slarft.o Removing lapack/slarfx.o Removing lapack/slargv.o Removing lapack/slarnv.o Removing lapack/slarra.o Removing lapack/slarrb.o Removing lapack/slarrc.o Removing lapack/slarrd.o Removing lapack/slarre.o Removing lapack/slarrf.o Removing lapack/slarrj.o Removing lapack/slarrk.o Removing lapack/slarrr.o Removing lapack/slarrv.o Removing lapack/slarscl2.o Removing lapack/slartg.o Removing lapack/slartgp.o Removing lapack/slartgs.o Removing lapack/slartv.o Removing lapack/slaruv.o Removing lapack/slarz.o Removing lapack/slarzb.o Removing lapack/slarzt.o Removing lapack/slas2.o Removing lapack/slascl.o Removing lapack/slascl2.o Removing lapack/slasd0.o Removing lapack/slasd1.o Removing lapack/slasd2.o Removing lapack/slasd3.o Removing lapack/slasd4.o Removing lapack/slasd5.o Removing lapack/slasd6.o Removing lapack/slasd7.o Removing lapack/slasd8.o Removing lapack/slasda.o Removing lapack/slasdq.o Removing lapack/slasdt.o Removing lapack/slaset.o Removing lapack/slasq1.o Removing lapack/slasq2.o Removing lapack/slasq3.o Removing lapack/slasq4.o Removing lapack/slasq5.o Removing lapack/slasq6.o Removing lapack/slasr.o Removing lapack/slasrt.o Removing lapack/slassq.o Removing lapack/slasv2.o Removing lapack/slaswp.o Removing lapack/slasy2.o Removing lapack/slasyf.o Removing lapack/slasyf_rook.o Removing lapack/slatbs.o Removing lapack/slatdf.o Removing lapack/slatps.o Removing lapack/slatrd.o Removing lapack/slatrs.o Removing lapack/slatrz.o Removing lapack/slatzm.o Removing lapack/slauu2.o Removing lapack/slauum.o Removing lapack/slazq3.o Removing lapack/slazq4.o Removing lapack/sopgtr.o Removing lapack/sopmtr.o Removing lapack/sorbdb.o Removing lapack/sorbdb1.o Removing lapack/sorbdb2.o Removing lapack/sorbdb3.o Removing lapack/sorbdb4.o Removing lapack/sorbdb5.o Removing lapack/sorbdb6.o Removing lapack/sorcsd.o Removing lapack/sorcsd2by1.o Removing lapack/sorg2l.o Removing lapack/sorg2r.o Removing lapack/sorgbr.o Removing lapack/sorghr.o Removing lapack/sorgl2.o Removing lapack/sorglq.o Removing lapack/sorgql.o Removing lapack/sorgqr.o Removing lapack/sorgr2.o Removing lapack/sorgrq.o Removing lapack/sorgtr.o Removing lapack/sorm2l.o Removing lapack/sorm2r.o Removing lapack/sormbr.o Removing lapack/sormhr.o Removing lapack/sorml2.o Removing lapack/sormlq.o Removing lapack/sormql.o Removing lapack/sormqr.o Removing lapack/sormr2.o Removing lapack/sormr3.o Removing lapack/sormrq.o Removing lapack/sormrz.o Removing lapack/sormtr.o Removing lapack/spbcon.o Removing lapack/spbequ.o Removing lapack/spbrfs.o Removing lapack/spbstf.o Removing lapack/spbsv.o Removing lapack/spbsvx.o Removing lapack/spbtf2.o Removing lapack/spbtrf.o Removing lapack/spbtrs.o Removing lapack/spftrf.o Removing lapack/spftri.o Removing lapack/spftrs.o Removing lapack/spocon.o Removing lapack/spoequ.o Removing lapack/spoequb.o Removing lapack/sporfs.o Removing lapack/sporfsx.o Removing lapack/sposv.o Removing lapack/sposvx.o Removing lapack/sposvxx.o Removing lapack/spotf2.o Removing lapack/spotrf.o Removing lapack/spotri.o Removing lapack/spotrs.o Removing lapack/sppcon.o Removing lapack/sppequ.o Removing lapack/spprfs.o Removing lapack/sppsv.o Removing lapack/sppsvx.o Removing lapack/spptrf.o Removing lapack/spptri.o Removing lapack/spptrs.o Removing lapack/spstf2.o Removing lapack/spstrf.o Removing lapack/sptcon.o Removing lapack/spteqr.o Removing lapack/sptrfs.o Removing lapack/sptsv.o Removing lapack/sptsvx.o Removing lapack/spttrf.o Removing lapack/spttrs.o Removing lapack/sptts2.o Removing lapack/srscl.o Removing lapack/ssbev.o Removing lapack/ssbevd.o Removing lapack/ssbevx.o Removing lapack/ssbgst.o Removing lapack/ssbgv.o Removing lapack/ssbgvd.o Removing lapack/ssbgvx.o Removing lapack/ssbtrd.o Removing lapack/ssfrk.o Removing lapack/sspcon.o Removing lapack/sspev.o Removing lapack/sspevd.o Removing lapack/sspevx.o Removing lapack/sspgst.o Removing lapack/sspgv.o Removing lapack/sspgvd.o Removing lapack/sspgvx.o Removing lapack/ssprfs.o Removing lapack/sspsv.o Removing lapack/sspsvx.o Removing lapack/ssptrd.o Removing lapack/ssptrf.o Removing lapack/ssptri.o Removing lapack/ssptrs.o Removing lapack/sstebz.o Removing lapack/sstedc.o Removing lapack/sstegr.o Removing lapack/sstein.o Removing lapack/sstemr.o Removing lapack/ssteqr.o Removing lapack/ssterf.o Removing lapack/sstev.o Removing lapack/sstevd.o Removing lapack/sstevr.o Removing lapack/sstevx.o Removing lapack/ssycon.o Removing lapack/ssycon_rook.o Removing lapack/ssyconv.o Removing lapack/ssyequb.o Removing lapack/ssyev.o Removing lapack/ssyevd.o Removing lapack/ssyevr.o Removing lapack/ssyevx.o Removing lapack/ssygs2.o Removing lapack/ssygst.o Removing lapack/ssygv.o Removing lapack/ssygvd.o Removing lapack/ssygvx.o Removing lapack/ssyrfs.o Removing lapack/ssyrfsx.o Removing lapack/ssysv.o Removing lapack/ssysv_rook.o Removing lapack/ssysvx.o Removing lapack/ssysvxx.o Removing lapack/ssyswapr.o Removing lapack/ssytd2.o Removing lapack/ssytf2.o Removing lapack/ssytf2_rook.o Removing lapack/ssytrd.o Removing lapack/ssytrf.o Removing lapack/ssytrf_rook.o Removing lapack/ssytri.o Removing lapack/ssytri2.o Removing lapack/ssytri2x.o Removing lapack/ssytri_rook.o Removing lapack/ssytrs.o Removing lapack/ssytrs2.o Removing lapack/ssytrs_rook.o Removing lapack/stbcon.o Removing lapack/stbrfs.o Removing lapack/stbtrs.o Removing lapack/stfsm.o Removing lapack/stftri.o Removing lapack/stfttp.o Removing lapack/stfttr.o Removing lapack/stgevc.o Removing lapack/stgex2.o Removing lapack/stgexc.o Removing lapack/stgsen.o Removing lapack/stgsja.o Removing lapack/stgsna.o Removing lapack/stgsy2.o Removing lapack/stgsyl.o Removing lapack/stpcon.o Removing lapack/stpmqrt.o Removing lapack/stpqrt.o Removing lapack/stpqrt2.o Removing lapack/stprfb.o Removing lapack/stprfs.o Removing lapack/stptri.o Removing lapack/stptrs.o Removing lapack/stpttf.o Removing lapack/stpttr.o Removing lapack/strcon.o Removing lapack/strevc.o Removing lapack/strexc.o Removing lapack/strrfs.o Removing lapack/strsen.o Removing lapack/strsna.o Removing lapack/strsyl.o Removing lapack/strti2.o Removing lapack/strtri.o Removing lapack/strtrs.o Removing lapack/strttf.o Removing lapack/strttp.o Removing lapack/stzrqf.o Removing lapack/stzrzf.o Removing lapack/zbbcsd.o Removing lapack/zbdsqr.o Removing lapack/zcgesv.o Removing lapack/zcposv.o Removing lapack/zdrscl.o Removing lapack/zgbbrd.o Removing lapack/zgbcon.o Removing lapack/zgbequ.o Removing lapack/zgbequb.o Removing lapack/zgbrfs.o Removing lapack/zgbrfsx.o Removing lapack/zgbsv.o Removing lapack/zgbsvx.o Removing lapack/zgbsvxx.o Removing lapack/zgbtf2.o Removing lapack/zgbtrf.o Removing lapack/zgbtrs.o Removing lapack/zgebak.o Removing lapack/zgebal.o Removing lapack/zgebd2.o Removing lapack/zgebrd.o Removing lapack/zgecon.o Removing lapack/zgeequ.o Removing lapack/zgeequb.o Removing lapack/zgees.o Removing lapack/zgeesx.o Removing lapack/zgeev.o Removing lapack/zgeevx.o Removing lapack/zgegs.o Removing lapack/zgegv.o Removing lapack/zgehd2.o Removing lapack/zgehrd.o Removing lapack/zgelq2.o Removing lapack/zgelqf.o Removing lapack/zgels.o Removing lapack/zgelsd.o Removing lapack/zgelss.o Removing lapack/zgelsx.o Removing lapack/zgelsy.o Removing lapack/zgemqrt.o Removing lapack/zgeql2.o Removing lapack/zgeqlf.o Removing lapack/zgeqp3.o Removing lapack/zgeqpf.o Removing lapack/zgeqr2.o Removing lapack/zgeqr2p.o Removing lapack/zgeqrf.o Removing lapack/zgeqrfp.o Removing lapack/zgeqrt.o Removing lapack/zgeqrt2.o Removing lapack/zgeqrt3.o Removing lapack/zgerfs.o Removing lapack/zgerfsx.o Removing lapack/zgerq2.o Removing lapack/zgerqf.o Removing lapack/zgesc2.o Removing lapack/zgesdd.o Removing lapack/zgesv.o Removing lapack/zgesvd.o Removing lapack/zgesvx.o Removing lapack/zgesvxx.o Removing lapack/zgetc2.o Removing lapack/zgetf2.o Removing lapack/zgetrf.o Removing lapack/zgetri.o Removing lapack/zgetrs.o Removing lapack/zggbak.o Removing lapack/zggbal.o Removing lapack/zgges.o Removing lapack/zggesx.o Removing lapack/zggev.o Removing lapack/zggevx.o Removing lapack/zggglm.o Removing lapack/zgghrd.o Removing lapack/zgglse.o Removing lapack/zggqrf.o Removing lapack/zggrqf.o Removing lapack/zggsvd.o Removing lapack/zggsvp.o Removing lapack/zgtcon.o Removing lapack/zgtrfs.o Removing lapack/zgtsv.o Removing lapack/zgtsvx.o Removing lapack/zgttrf.o Removing lapack/zgttrs.o Removing lapack/zgtts2.o Removing lapack/zhbev.o Removing lapack/zhbevd.o Removing lapack/zhbevx.o Removing lapack/zhbgst.o Removing lapack/zhbgv.o Removing lapack/zhbgvd.o Removing lapack/zhbgvx.o Removing lapack/zhbtrd.o Removing lapack/zhecon.o Removing lapack/zhecon_rook.o Removing lapack/zheequb.o Removing lapack/zheev.o Removing lapack/zheevd.o Removing lapack/zheevr.o Removing lapack/zheevx.o Removing lapack/zhegs2.o Removing lapack/zhegst.o Removing lapack/zhegv.o Removing lapack/zhegvd.o Removing lapack/zhegvx.o Removing lapack/zherfs.o Removing lapack/zherfsx.o Removing lapack/zhesv.o Removing lapack/zhesv_rook.o Removing lapack/zhesvx.o Removing lapack/zhesvxx.o Removing lapack/zheswapr.o Removing lapack/zhetd2.o Removing lapack/zhetf2.o Removing lapack/zhetf2_rook.o Removing lapack/zhetrd.o Removing lapack/zhetrf.o Removing lapack/zhetrf_rook.o Removing lapack/zhetri.o Removing lapack/zhetri2.o Removing lapack/zhetri2x.o Removing lapack/zhetri_rook.o Removing lapack/zhetrs.o Removing lapack/zhetrs2.o Removing lapack/zhetrs_rook.o Removing lapack/zhfrk.o Removing lapack/zhgeqz.o Removing lapack/zhpcon.o Removing lapack/zhpev.o Removing lapack/zhpevd.o Removing lapack/zhpevx.o Removing lapack/zhpgst.o Removing lapack/zhpgv.o Removing lapack/zhpgvd.o Removing lapack/zhpgvx.o Removing lapack/zhprfs.o Removing lapack/zhpsv.o Removing lapack/zhpsvx.o Removing lapack/zhptrd.o Removing lapack/zhptrf.o Removing lapack/zhptri.o Removing lapack/zhptrs.o Removing lapack/zhsein.o Removing lapack/zhseqr.o Removing lapack/zla_gbamv.o Removing lapack/zla_gbrcond_c.o Removing lapack/zla_gbrcond_x.o Removing lapack/zla_gbrfsx_extended.o Removing lapack/zla_gbrpvgrw.o Removing lapack/zla_geamv.o Removing lapack/zla_gercond_c.o Removing lapack/zla_gercond_x.o Removing lapack/zla_gerfsx_extended.o Removing lapack/zla_gerpvgrw.o Removing lapack/zla_heamv.o Removing lapack/zla_hercond_c.o Removing lapack/zla_hercond_x.o Removing lapack/zla_herfsx_extended.o Removing lapack/zla_herpvgrw.o Removing lapack/zla_lin_berr.o Removing lapack/zla_porcond_c.o Removing lapack/zla_porcond_x.o Removing lapack/zla_porfsx_extended.o Removing lapack/zla_porpvgrw.o Removing lapack/zla_syamv.o Removing lapack/zla_syrcond_c.o Removing lapack/zla_syrcond_x.o Removing lapack/zla_syrfsx_extended.o Removing lapack/zla_syrpvgrw.o Removing lapack/zla_wwaddw.o Removing lapack/zlabrd.o Removing lapack/zlacgv.o Removing lapack/zlacn2.o Removing lapack/zlacon.o Removing lapack/zlacp2.o Removing lapack/zlacpy.o Removing lapack/zlacrm.o Removing lapack/zlacrt.o Removing lapack/zladiv.o Removing lapack/zlaed0.o Removing lapack/zlaed7.o Removing lapack/zlaed8.o Removing lapack/zlaein.o Removing lapack/zlaesy.o Removing lapack/zlaev2.o Removing lapack/zlag2c.o Removing lapack/zlags2.o Removing lapack/zlagtm.o Removing lapack/zlahef.o Removing lapack/zlahef_rook.o Removing lapack/zlahqr.o Removing lapack/zlahr2.o Removing lapack/zlahrd.o Removing lapack/zlaic1.o Removing lapack/zlals0.o Removing lapack/zlalsa.o Removing lapack/zlalsd.o Removing lapack/zlangb.o Removing lapack/zlange.o Removing lapack/zlangt.o Removing lapack/zlanhb.o Removing lapack/zlanhe.o Removing lapack/zlanhf.o Removing lapack/zlanhp.o Removing lapack/zlanhs.o Removing lapack/zlanht.o Removing lapack/zlansb.o Removing lapack/zlansp.o Removing lapack/zlansy.o Removing lapack/zlantb.o Removing lapack/zlantp.o Removing lapack/zlantr.o Removing lapack/zlapll.o Removing lapack/zlapmr.o Removing lapack/zlapmt.o Removing lapack/zlaqgb.o Removing lapack/zlaqge.o Removing lapack/zlaqhb.o Removing lapack/zlaqhe.o Removing lapack/zlaqhp.o Removing lapack/zlaqp2.o Removing lapack/zlaqps.o Removing lapack/zlaqr0.o Removing lapack/zlaqr1.o Removing lapack/zlaqr2.o Removing lapack/zlaqr3.o Removing lapack/zlaqr4.o Removing lapack/zlaqr5.o Removing lapack/zlaqsb.o Removing lapack/zlaqsp.o Removing lapack/zlaqsy.o Removing lapack/zlar1v.o Removing lapack/zlar2v.o Removing lapack/zlarcm.o Removing lapack/zlarf.o Removing lapack/zlarfb.o Removing lapack/zlarfg.o Removing lapack/zlarfgp.o Removing lapack/zlarft.o Removing lapack/zlarfx.o Removing lapack/zlargv.o Removing lapack/zlarnv.o Removing lapack/zlarrv.o Removing lapack/zlarscl2.o Removing lapack/zlartg.o Removing lapack/zlartv.o Removing lapack/zlarz.o Removing lapack/zlarzb.o Removing lapack/zlarzt.o Removing lapack/zlascl.o Removing lapack/zlascl2.o Removing lapack/zlaset.o Removing lapack/zlasr.o Removing lapack/zlassq.o Removing lapack/zlaswp.o Removing lapack/zlasyf.o Removing lapack/zlasyf_rook.o Removing lapack/zlat2c.o Removing lapack/zlatbs.o Removing lapack/zlatdf.o Removing lapack/zlatps.o Removing lapack/zlatrd.o Removing lapack/zlatrs.o Removing lapack/zlatrz.o Removing lapack/zlatzm.o Removing lapack/zlauu2.o Removing lapack/zlauum.o Removing lapack/zpbcon.o Removing lapack/zpbequ.o Removing lapack/zpbrfs.o Removing lapack/zpbstf.o Removing lapack/zpbsv.o Removing lapack/zpbsvx.o Removing lapack/zpbtf2.o Removing lapack/zpbtrf.o Removing lapack/zpbtrs.o Removing lapack/zpftrf.o Removing lapack/zpftri.o Removing lapack/zpftrs.o Removing lapack/zpocon.o Removing lapack/zpoequ.o Removing lapack/zpoequb.o Removing lapack/zporfs.o Removing lapack/zporfsx.o Removing lapack/zposv.o Removing lapack/zposvx.o Removing lapack/zposvxx.o Removing lapack/zpotf2.o Removing lapack/zpotrf.o Removing lapack/zpotri.o Removing lapack/zpotrs.o Removing lapack/zppcon.o Removing lapack/zppequ.o Removing lapack/zpprfs.o Removing lapack/zppsv.o Removing lapack/zppsvx.o Removing lapack/zpptrf.o Removing lapack/zpptri.o Removing lapack/zpptrs.o Removing lapack/zpstf2.o Removing lapack/zpstrf.o Removing lapack/zptcon.o Removing lapack/zpteqr.o Removing lapack/zptrfs.o Removing lapack/zptsv.o Removing lapack/zptsvx.o Removing lapack/zpttrf.o Removing lapack/zpttrs.o Removing lapack/zptts2.o Removing lapack/zrot.o Removing lapack/zspcon.o Removing lapack/zspmv.o Removing lapack/zspr.o Removing lapack/zsprfs.o Removing lapack/zspsv.o Removing lapack/zspsvx.o Removing lapack/zsptrf.o Removing lapack/zsptri.o Removing lapack/zsptrs.o Removing lapack/zstedc.o Removing lapack/zstegr.o Removing lapack/zstein.o Removing lapack/zstemr.o Removing lapack/zsteqr.o Removing lapack/zsycon.o Removing lapack/zsycon_rook.o Removing lapack/zsyconv.o Removing lapack/zsyequb.o Removing lapack/zsymv.o Removing lapack/zsyr.o Removing lapack/zsyrfs.o Removing lapack/zsyrfsx.o Removing lapack/zsysv.o Removing lapack/zsysv_rook.o Removing lapack/zsysvx.o Removing lapack/zsysvxx.o Removing lapack/zsyswapr.o Removing lapack/zsytf2.o Removing lapack/zsytf2_rook.o Removing lapack/zsytrf.o Removing lapack/zsytrf_rook.o Removing lapack/zsytri.o Removing lapack/zsytri2.o Removing lapack/zsytri2x.o Removing lapack/zsytri_rook.o Removing lapack/zsytrs.o Removing lapack/zsytrs2.o Removing lapack/zsytrs_rook.o Removing lapack/ztbcon.o Removing lapack/ztbrfs.o Removing lapack/ztbtrs.o Removing lapack/ztfsm.o Removing lapack/ztftri.o Removing lapack/ztfttp.o Removing lapack/ztfttr.o Removing lapack/ztgevc.o Removing lapack/ztgex2.o Removing lapack/ztgexc.o Removing lapack/ztgsen.o Removing lapack/ztgsja.o Removing lapack/ztgsna.o Removing lapack/ztgsy2.o Removing lapack/ztgsyl.o Removing lapack/ztpcon.o Removing lapack/ztpmqrt.o Removing lapack/ztpqrt.o Removing lapack/ztpqrt2.o Removing lapack/ztprfb.o Removing lapack/ztprfs.o Removing lapack/ztptri.o Removing lapack/ztptrs.o Removing lapack/ztpttf.o Removing lapack/ztpttr.o Removing lapack/ztrcon.o Removing lapack/ztrevc.o Removing lapack/ztrexc.o Removing lapack/ztrrfs.o Removing lapack/ztrsen.o Removing lapack/ztrsna.o Removing lapack/ztrsyl.o Removing lapack/ztrti2.o Removing lapack/ztrtri.o Removing lapack/ztrtrs.o Removing lapack/ztrttf.o Removing lapack/ztrttp.o Removing lapack/ztzrqf.o Removing lapack/ztzrzf.o Removing lapack/zunbdb.o Removing lapack/zunbdb1.o Removing lapack/zunbdb2.o Removing lapack/zunbdb3.o Removing lapack/zunbdb4.o Removing lapack/zunbdb5.o Removing lapack/zunbdb6.o Removing lapack/zuncsd.o Removing lapack/zuncsd2by1.o Removing lapack/zung2l.o Removing lapack/zung2r.o Removing lapack/zungbr.o Removing lapack/zunghr.o Removing lapack/zungl2.o Removing lapack/zunglq.o Removing lapack/zungql.o Removing lapack/zungqr.o Removing lapack/zungr2.o Removing lapack/zungrq.o Removing lapack/zungtr.o Removing lapack/zunm2l.o Removing lapack/zunm2r.o Removing lapack/zunmbr.o Removing lapack/zunmhr.o Removing lapack/zunml2.o Removing lapack/zunmlq.o Removing lapack/zunmql.o Removing lapack/zunmqr.o Removing lapack/zunmr2.o Removing lapack/zunmr3.o Removing lapack/zunmrq.o Removing lapack/zunmrz.o Removing lapack/zunmtr.o Removing lapack/zupgtr.o Removing lapack/zupmtr.o Removing libfblas.a Removing libflapack.a Removing pkg.gitcommit Removing tmpmakefile Executing: ['git', 'checkout', '-f', 'e8a03f57d64cf01d987d4b4ce9b961c24765747d'] Executing: mpif90 -qversion Executing: mpif90 -V Executing: mpif90 --version stdout: GNU Fortran (GCC) 7.3.0 Copyright (C) 2017 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.sharedLibraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.scalarTypes -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.metis -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 -O0 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 -O0 Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.sharedLibraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.scalarTypes -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.metis -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 -mfp16-format=ieee /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 1 stderr: clang-9: error: unknown argument: '-mfp16-format=ieee' Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 -mfp16-format=ieee clang-9: error: unknown argument: '-mfp16-format=ieee' PETSc Error: No output file produced Rejecting compiler flag -mfp16-format=ieee due to nonzero status from link Rejecting compiler flag -mfp16-format=ieee due to clang-9: error: unknown argument: '-mfp16-format=ieee' PETSc Error: No output file produced Executing: mpif90 -V Executing: mpif90 --version stdout: GNU Fortran (GCC) 7.3.0 Copyright (C) 2017 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Makefile /Users/kongf/projects/petsc1/arch-darwin-c-opt/lib/petsc/conf/pkg.conf.fblaslapack has correct checksum Commit file /Users/kongf/projects/petsc1/arch-darwin-c-opt/lib/petsc/conf/pkg.gitcommit.fblaslapack has correct checksum Do not need to rebuild FBLASLAPACK Not checking for library in Download FBLASLAPACK: [] because no functions given to check for ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for optional headers [] in Download FBLASLAPACK: ['/Users/kongf/projects/petsc1/arch-darwin-c-opt/include', '/Users/kongf/projects/miniconda3/envs/moose-mpich/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/Users/kongf/projects/petsc1/arch-darwin-c-opt/include', '/Users/kongf/projects/miniconda3/envs/moose-mpich/include'] Found header files [] in ['/Users/kongf/projects/petsc1/arch-darwin-c-opt/include', '/Users/kongf/projects/miniconda3/envs/moose-mpich/include'] Checking for headers [] in Download FBLASLAPACK: ['/Users/kongf/projects/petsc1/arch-darwin-c-opt/include', '/Users/kongf/projects/miniconda3/envs/moose-mpich/include'] ============================================================================================= TESTING: checkVersion from config.packages.fblaslapack(config/BuildSystem/config/package.py:1026) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.fblaslapack(config/BuildSystem/config/package.py:955) By default we don't care about checking if the library is shared child config.packages.fblaslapack 0.725261 ============================================================================================= TESTING: consistencyChecks from config.packages.pthread(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.pthread(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.pthread(config/BuildSystem/config/packages/pthread.py:20) Checks for pthread_barrier_t, cpu_set_t, and sys/sysctl.h ================================================================================== Checking for a functional pthread Checking for library in Compiler specific search PTHREAD: [] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [pthread_create] in library [] [] ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.sharedLibraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.scalarTypes -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.metis -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char pthread_create(); static void _check_pthread_create() { pthread_create(); } int main() { _check_pthread_create();; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -lc++ -ldl -lgcc_s.1 Checking for optional headers [] in Compiler specific search PTHREAD: ['/Users/kongf/projects/miniconda3/envs/moose-mpich/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/Users/kongf/projects/miniconda3/envs/moose-mpich/include'] Found header files [] in ['/Users/kongf/projects/miniconda3/envs/moose-mpich/include'] Checking for headers ['pthread.h'] in Compiler specific search PTHREAD: ['/Users/kongf/projects/miniconda3/envs/moose-mpich/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['pthread.h'] in ['/Users/kongf/projects/miniconda3/envs/moose-mpich/include'] Checking include with compiler flags var CPPFLAGS ['/Users/kongf/projects/miniconda3/envs/moose-mpich/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.metis -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.parmetis -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/Users/kongf/projects/miniconda3/envs/moose-mpich/include /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Found header files ['pthread.h'] in ['/Users/kongf/projects/miniconda3/envs/moose-mpich/include'] ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.pthread/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.sharedLibraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.scalarTypes -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.metis -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.pthread/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.pthread/conftest.c:6:1: error: use of undeclared identifier 'pthread_barrier_t' pthread_barrier_t *a; ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.pthread/conftest.c:6:20: error: use of undeclared identifier 'a' pthread_barrier_t *a; ^ 2 errors generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { pthread_barrier_t *a; ; return 0; } ===== Checking compiler Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.pthread/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.sharedLibraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.scalarTypes -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.metis -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.pthread/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.pthread/conftest.c:6:1: error: use of undeclared identifier 'cpu_set_t' cpu_set_t *a; ^ /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.pthread/conftest.c:6:12: error: use of undeclared identifier 'a' cpu_set_t *a; ^ 2 errors generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { cpu_set_t *a; ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.metis -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.parmetis -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.pthread /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.pthread/conftest.c Preprocess output before filtering: : Preprocess output after filtering: : Defined "HAVE_SYS_SYSCTL_H" to "1" ============================================================================================= TESTING: checkVersion from config.packages.pthread(config/BuildSystem/config/package.py:1026) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.pthread(config/BuildSystem/config/package.py:955) By default we don't care about checking if the library is shared child config.packages.pthread 0.787257 ============================================================================================= TESTING: consistencyChecks from config.packages.egads(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.egads(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.egads 0.001477 ============================================================================================= TESTING: consistencyChecks from config.packages.PTScotch(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.PTScotch(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.PTScotch 0.001026 ============================================================================================= TESTING: consistencyChecks from config.packages.mmg(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mmg(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.mmg 0.000968 ============================================================================================= TESTING: consistencyChecks from config.packages.parmmg(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.parmmg(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.parmmg 0.000945 ============================================================================================= TESTING: consistencyChecks from config.packages.Zoltan(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Zoltan(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.Zoltan 0.000949 ============================================================================================= TESTING: consistencyChecks from config.packages.ADIOS(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ADIOS(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.ADIOS 0.000941 ============================================================================================= TESTING: consistencyChecks from config.packages.openmp(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.openmp(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.openmp 0.000847 ============================================================================================= TESTING: consistencyChecks from config.packages.viennacl(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.viennacl(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.viennacl 0.000950 ============================================================================================= TESTING: consistencyChecks from config.packages.ColPack(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ColPack(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.ColPack 0.000932 ============================================================================================= TESTING: consistencyChecks from config.packages.ADOLC(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ADOLC(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.ADOLC 0.001040 ============================================================================================= TESTING: consistencyChecks from config.packages.openblas(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.openblas(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.openblas 0.001023 ============================================================================================= TESTING: consistencyChecks from config.packages.blis(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.blis(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.blis 0.000999 ============================================================================================= TESTING: consistencyChecks from config.packages.f2cblaslapack(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.f2cblaslapack(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.f2cblaslapack 0.000925 ============================================================================================= TESTING: consistencyChecks from config.packages.BlasLapack(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.BlasLapack(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:454) ================================================================================ Checking for BLAS and LAPACK in fblaslapack ============================================================================================= TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:109) Checking for BLAS and LAPACK symbols Checking for Fortran name mangling underscore on BLAS/LAPACK Linker output before filtering: ld: warning: object file (/Users/kongf/projects/petsc1/arch-darwin-c-opt/lib/libfblas.a(ddot.o)) was built for newer OSX version (10.14) than being linked (10.9) : Linker output after filtering: ld: warning: object file (/Users/kongf/projects/petsc1/arch-darwin-c-opt/lib/libfblas.a(ddot.o)) was built for newer OSX version (10.14) than being linked (10.9): Checking for functions [ddot_] in library ['/Users/kongf/projects/petsc1/arch-darwin-c-opt/lib/libfblas.a'] ['-Wl,-rpath,/Users/kongf/projects/miniconda3/envs/moose-mpich/lib', '-L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib', '-lc++', '-ldl', '-lgcc_s.1', '-lmpifort', '-lmpi', '-lpmpi', '-lgfortran', '-Wl,-rpath,/Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0', '-L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0', '-Wl,-rpath,/Users/kongf/projects/miniconda3/envs/moose-mpich/lib', '-lgfortran', '-lquadmath', '-lm'] ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.sharedLibraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.scalarTypes -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.metis -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -Wl,-rpath,/Users/kongf/projects/petsc1/arch-darwin-c-opt/lib -L/Users/kongf/projects/petsc1/arch-darwin-c-opt/lib -lfblas -Wl,-rpath,/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -lc++ -ldl -lgcc_s.1 -lmpifort -lmpi -lpmpi -lgfortran -Wl,-rpath,/Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0 -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0 -Wl,-rpath,/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -lgfortran -lquadmath -lm -lc++ -ldl -lgcc_s.1 Possible ERROR while running linker: stderr: ld: warning: object file (/Users/kongf/projects/petsc1/arch-darwin-c-opt/lib/libfblas.a(ddot.o)) was built for newer OSX version (10.14) than being linked (10.9) Checking for no name mangling on BLAS/LAPACK Linker output before filtering: Undefined symbols for architecture x86_64: "_ddot", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation) : Linker output after filtering: Undefined symbols for architecture x86_64: "_ddot", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation): Checking for functions [ddot] in library ['/Users/kongf/projects/petsc1/arch-darwin-c-opt/lib/libfblas.a'] ['-Wl,-rpath,/Users/kongf/projects/miniconda3/envs/moose-mpich/lib', '-L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib', '-lc++', '-ldl', '-lgcc_s.1', '-lmpifort', '-lmpi', '-lpmpi', '-lgfortran', '-Wl,-rpath,/Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0', '-L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0', '-Wl,-rpath,/Users/kongf/projects/miniconda3/envs/moose-mpich/lib', '-lgfortran', '-lquadmath', '-lm'] ===== Checking linker Executing: mpicc -c -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilerFlags -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.closure -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.compilersFortran -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.headers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.cacheDetails -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.types -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.functions -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.getResidentSetSize -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.featureTestMacros -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.utilities.missing -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.sharedLibraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/PETSc.options.scalarTypes -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.MPI -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.metis -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.setCompilers -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries -I/var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot(); static void _check_ddot() { ddot(); } int main() { _check_ddot();; return 0; } Executing: mpicc -o /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -Qunused-arguments -fvisibility=hidden -g -O3 /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/config.libraries/conftest.o -Wl,-rpath,/Users/kongf/projects/petsc1/arch-darwin-c-opt/lib -L/Users/kongf/projects/petsc1/arch-darwin-c-opt/lib -lfblas -Wl,-rpath,/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -lc++ -ldl -lgcc_s.1 -lmpifort -lmpi -lpmpi -lgfortran -Wl,-rpath,/Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0 -L/Users/kongf/projects/miniconda3/envs/moose-mpich/lib/gcc/x86_64-apple-darwin13.4.0/7.3.0 -Wl,-rpath,/Users/kongf/projects/miniconda3/envs/moose-mpich/lib -lgfortran -lquadmath -lm -lc++ -ldl -lgcc_s.1 Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_ddot", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang-9: error: linker command failed with exit code 1 (use -v to see invocation) Unknown name mangling in BLAS/LAPACK **** Configure header /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/confdefs.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #define PETSC_Alignx(a,b) #define PETSC_CLANGUAGE_C 1 #define PETSC_CXX_INLINE inline #define PETSC_CXX_RESTRICT __restrict #define PETSC_C_INLINE inline #define PETSC_C_RESTRICT __restrict #define PETSC_DO_NOT_SWAP_CHILD_FOR_DEBUGGER 1 #define PETSC_FORTRAN_CHARLEN_T int #define PETSC_FORTRAN_TYPE_INITIALIZE = -2 #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_BZERO 1 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_CLOSURE 1 #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_HAVE_CXX_DIALECT_CXX11 1 #define PETSC_HAVE_DLADDR 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_HAVE_ERF 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_FENV_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_FORTRAN_FLUSH 1 #define PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT 1 #define PETSC_HAVE_FORTRAN_TYPE_STAR 1 #define PETSC_HAVE_FORTRAN_UNDERSCORE 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_GETWD 1 #define PETSC_HAVE_IMMINTRIN_H 1 #define PETSC_HAVE_INTTYPES_H 1 #define PETSC_HAVE_ISINF 1 #define PETSC_HAVE_ISNAN 1 #define PETSC_HAVE_ISNORMAL 1 #define PETSC_HAVE_LGAMMA 1 #define PETSC_HAVE_LOG2 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_MACHINE_ENDIAN_H 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE_MMAP 1 #define PETSC_HAVE_MPICH_NUMVERSION 30302300 #define PETSC_HAVE_MPIEXEC_ENVIRONMENTAL_VARIABLE MPIR_CVAR_CH3 #define PETSC_HAVE_MPIIO 1 #define PETSC_HAVE_MPI_COMBINER_CONTIGUOUS 1 #define PETSC_HAVE_MPI_COMBINER_DUP 1 #define PETSC_HAVE_MPI_COMBINER_NAMED 1 #define PETSC_HAVE_MPI_EXSCAN 1 #define PETSC_HAVE_MPI_F90MODULE 1 #define PETSC_HAVE_MPI_F90MODULE_VISIBILITY 1 #define PETSC_HAVE_MPI_FEATURE_DYNAMIC_WINDOW 1 #define PETSC_HAVE_MPI_FINALIZED 1 #define PETSC_HAVE_MPI_GET_ACCUMULATE 1 #define PETSC_HAVE_MPI_GET_LIBRARY_VERSION 1 #define PETSC_HAVE_MPI_IALLREDUCE 1 #define PETSC_HAVE_MPI_IBARRIER 1 #define PETSC_HAVE_MPI_INIT_THREAD 1 #define PETSC_HAVE_MPI_INT64_T 1 #define PETSC_HAVE_MPI_IN_PLACE 1 #define PETSC_HAVE_MPI_LONG_DOUBLE 1 #define PETSC_HAVE_MPI_NEIGHBORHOOD_COLLECTIVES 1 #define PETSC_HAVE_MPI_NONBLOCKING_COLLECTIVES 1 #define PETSC_HAVE_MPI_ONE_SIDED 1 #define PETSC_HAVE_MPI_PROCESS_SHARED_MEMORY 1 #define PETSC_HAVE_MPI_REDUCE_LOCAL 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER_BLOCK 1 #define PETSC_HAVE_MPI_RGET 1 #define PETSC_HAVE_MPI_TYPE_DUP 1 #define PETSC_HAVE_MPI_TYPE_GET_ENVELOPE 1 #define PETSC_HAVE_MPI_WIN_CREATE 1 #define PETSC_HAVE_NANOSLEEP 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_PTHREAD_H 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_SLEPC 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_STRUCT_SIGACTION 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_SYS_SYSCTL_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_USLEEP 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_IS_COLORING_MAX USHRT_MAX #define PETSC_IS_COLORING_VALUE_TYPE short #define PETSC_IS_COLORING_VALUE_TYPE_F integer2 #define PETSC_LEVEL1_DCACHE_LINESIZE 32 #define PETSC_MAX_PATH_LEN 1024 #define PETSC_MEMALIGN 16 #define PETSC_MPIU_IS_COLORING_VALUE_TYPE MPI_UNSIGNED_SHORT #define PETSC_PYTHON_EXE "/Users/kongf/projects/miniconda3/envs/moose-mpich/bin/python3" #define PETSC_SIGNAL_CAST #define PETSC_SIZEOF_ENUM 4 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG 8 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_USE_64BIT_INDICES 1 #define PETSC_USE_AVX512_KERNELS 1 #define PETSC_USE_BACKWARD_LOOP 1 #define PETSC_USE_CTABLE 1 #define PETSC_USE_DEBUGGER "lldb" #define PETSC_USE_INFO 1 #define PETSC_USE_LOG 1 #define PETSC_USE_MALLOC_COALESCED 1 #define PETSC_USE_REAL_DOUBLE 1 #define PETSC_USE_SHARED_LIBRARIES 1 #define PETSC_USE_VISIBILITY_C 1 #define PETSC_USE_VISIBILITY_CXX 1 #define PETSC_USING_64BIT_PTR 1 #define PETSC_USING_F2003 1 #define PETSC_USING_F90FREEFORM 1 #define PETSC_VERSION_BRANCH_GIT "Fande-Kong/ghost_vec_ltg_mapping" #define PETSC_VERSION_DATE_GIT "2021-05-06 01:23:59 +0000" #define PETSC_VERSION_GIT "v3.15.0-438-g1127493aad" #define PETSC__BSD_SOURCE 1 #define PETSC__DEFAULT_SOURCE 1 #define PETSC__GNU_SOURCE 1 #endif **** C specific Configure header /var/folders/sc/sgg99kgj4vv3p5zhvg6jf2f40000gn/T/petsc-cf5frw94/conffix.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #if defined(__cplusplus) extern "C" { } #else #endif #endif ******************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): ------------------------------------------------------------------------------- --download-fblaslapack libraries cannot be used ******************************************************************************* File "/Users/kongf/projects/petsc1/config/configure.py", line 458, in petsc_configure framework.configure(out = sys.stdout) File "/Users/kongf/projects/petsc1/config/BuildSystem/config/framework.py", line 1309, in configure self.processChildren() File "/Users/kongf/projects/petsc1/config/BuildSystem/config/framework.py", line 1297, in processChildren self.serialEvaluation(self.childGraph) File "/Users/kongf/projects/petsc1/config/BuildSystem/config/framework.py", line 1272, in serialEvaluation child.configure() File "/Users/kongf/projects/petsc1/config/BuildSystem/config/package.py", line 1146, in configure self.executeTest(self.configureLibrary) File "/Users/kongf/projects/petsc1/config/BuildSystem/config/base.py", line 138, in executeTest ret = test(*args,**kargs) File "/Users/kongf/projects/petsc1/config/BuildSystem/config/packages/BlasLapack.py", line 457, in configureLibrary for (name, self.blasLibrary, self.lapackLibrary, self.known64, self.usesopenmp) in self.generateGuesses(): File "/Users/kongf/projects/petsc1/config/BuildSystem/config/packages/BlasLapack.py", line 177, in generateGuesses raise RuntimeError('--download-fblaslapack libraries cannot be used') ================================================================================ Finishing configure run at Thu, 06 May 2021 10:32:38 -0600 ================================================================================