Executing: uname -s stdout: Linux ================================================================================ ================================================================================ Starting configure run at Thu, 15 Apr 2021 07:27:14 +0900 Configure Options: --configModules=PETSc.Configure --optionsModule=config.compilerOptions --with-blaslapack-lib=-lfjlapack --with-debugging=0 CC=mpifcc CXX=mpiFCC FC=mpifrt COPTFLAGS=-Kfast,openmp CXXOPTFLAGS=-Kfast,openmp --download-kokkos-cmake-arguments="-DCMAKE_BUILD_TYPE=Release -DBUILD_TESTING=OFF -DKokkos_ENABLE_LIBDL=OFF -DKokkos_ENABLE_OPENMP=ON -DKokkos_ENABLE_AGGRESSIVE_VECTORIZATION=ON" --download-cmake=https://github.com/Kitware/CMake/releases/download/v3.20.1/cmake-3.20.1.tar.gz PETSC_ARCH=arch-arm --download-p4est --download-zlib --download-kokkos=1 --download-kokkos-kernels=1 --with-openmp Working directory: /vol0004/ra010009/a04199/petsc Machine platform: uname_result(system='Linux', node='i31-0201c', release='4.18.0-240.8.1.el8_3.aarch64', version='#1 SMP Fri Dec 4 12:08:30 EST 2020', machine='aarch64', processor='aarch64') Python version: 3.6.8 (default, Aug 18 2020, 08:37:53) [GCC 8.3.1 20191121 (Red Hat 8.3.1-5)] ================================================================================ Environmental variables PJM_LLIO_LOCALTMP_SIZE=0 LD_LIBRARY_PATH=/opt/FJSVxtclanga/tcsds-1.2.31/lib64:/vol0001/apps/arm-lib/arm-linux-compiler-20.1_Generic-AArch64_RHEL-7_aarch64-linux/lib:/vol0001/apps/arm-lib/arm-linux-compiler-20.1_Generic-AArch64_RHEL-7_aarch64-linux/lib/clang/9.0.1/armpl_links/lib:/vol0001/apps/arm-lib/armpl-20.1.0_A64FX_RHEL-7_arm-linux-compiler_20.1_aarch64-linux/lib:/vol0001/apps/arm-lib/gcc-9.2.0_Generic-AArch64_RHEL-7_aarch64-linux/lib64 LS_COLORS=rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;05;37;41:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36: PJM_JOBNAME=STDIN PJM_MPI_PROC=1 PJM_RSCUNIT=rscunit_ft01 MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD LANG=C PJM_O_MAIL=/var/spool/mail/a04199 HISTCONTROL=ignoredups PJM_PK_retention_state_max=0 HOSTNAME=i31-0201c PJM_ELAPSED_TIME_MODE=fixed PJM_O_LOGNAME=a04199 PATH_modshare=/opt/FJSVxtclanga/tcsds-1.2.31/bin:1:/usr/sbin:1:/usr/bin:1:/usr/local/sbin:1:/usr/share/Modules/bin:1:/usr/local/bin:1 LOADEDMODULES_modshare=lang/tcsds-1.2.31:1 PJM_NORESTART=1 PETSC_ARCH=arch-ci-linux-gcc-opt PJM_SUBJOBID=6302082 PJM_PK_eco_state_min=0 PJM_PK_issue_state_min=0 OMPI_CKPTCONFIG=0x00 PJM_PK_retention_state_min=0 PJM_STDOUT_PATH=/vol0004/ra010009/a04199/petsc/STDIN.6302082.out PJM_NODE_ALLOCATION_MODE=noncont PJM_NODE_QUOTA_LIMIT=18446744073709551615 PJM_O_HOME=/home/ra010009/a04199 S_COLORS=auto PJM_LLIO_AUTO_READAHEAD=on PJM_PK_eco_state_max=2 LD_LIBRARY_PATH_modshare=/opt/FJSVxtclanga/tcsds-1.2.31/lib64:1 PJM_LLIO_STRIPE_COUNT=1 MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl PJM_PK_throttling_state_min=0 USER=a04199 PJM_NODE=1 PJM_PK_issue_state_max=1 PJM_JOBID=6302082 FJSVXTCLANGA=/opt/FJSVxtclanga/tcsds-1.2.31 PJM_O_SHELL=/bin/bash PJM_DPREFIX=#PJM PJM_STDERR_PATH=/vol0004/ra010009/a04199/petsc/STDIN.6302082.err PJM_NODE_MEM_LIMIT=18446744073709551615 PWD=/vol0004/ra010009/a04199/petsc MODULES_LMCONFLICT_modshare=lang/tcsds-1.2.31&lang:1 HOME=/home/ra010009/a04199 PJM_ELAPSE_LIMIT=3600 GIT_PS1_SHOWDIRTYSTATE=1 PJM_PK_throttling_state_max=9 PLE_SCRIPT_TYPE=JOB_INTERACTIVE PJM_LLIO_ASYNC_CLOSE=on PJM_O_WORKDIR=/vol0004/ra010009/a04199/petsc PJM_LLIO_CN_CACHED_WRITE_SIZE=4194304 PJM_MAILOPTION=0x0 _LMFILES__modshare=/work/system/modulefiles/lang/tcsds-1.2.31:1 MODULES_LMALTNAME=lang/tcsds-1.2.31&lang/default&lang PJM_O_LANG=en_US.utf8 PJM_LOCALTMP=/local FJPNCKPT_CONFIG=0x00 PJM_RSCGRP=int PJM_PK_issue_state=0 PJM_O_PATH=/opt/FJSVxtclanga/tcsds-1.2.31/bin:/opt/local/openssh/bin:/usr/share/Modules/bin:/opt/local/openssh/bin:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/home/ra010009/a04199/.local/bin:/home/ra010009/a04199/bin TMPDIR=/home/ra010009/a04199 LOADEDMODULES=lang/tcsds-1.2.31 PJM_NET_ROUTE=static GIT_PS1_SHOWUPSTREAM=auto PJM_PK_freq_min=2000 PJM_O_HOST=fn01sv01 PJM_LLIO_CN_READ_CACHE=on MODULES_LMCONFLICT=lang/tcsds-1.2.31&lang MAIL=/var/spool/mail/a04199 PJM_PK_eco_state=0 TERM=xterm PJM_CUSTOM_RESOURCES=test_rsc01=0,eco_state=0,eco_state_max=2,eco_state_min=0,ex_pipe_state=0,ex_pipe_state_max=1,ex_pipe_state_min=0,freq=2000,freq_max=2200,freq_min=2000,issue_state=0,issue_state_max=1,issue_state_min=0,jobenv=linux2,knob_io=SYSTEM,retention_state=0,retention_state_acores=0,retention_state_max=0,retention_state_min=0,throttling_state=0,throttling_state_max=9,throttling_state_min=0 PJM_SHAREDTMP=/share PJM_PK_freq_max=2200 PJM_LLIO_SHAREDTMP_SIZE=0 MODULES_LMALTNAME_modshare=lang/tcsds-1.2.31&lang/default&lang:1 FJSVXTCMPI=/opt/FJSVxtclanga/tcsds-1.2.31 PJM_NODE_ALLOCATION_IO_MODE=no-io-exclusive SHLVL=1 PJM_NODE_X=1 PJM_JOBDIR=/vol0004/ra010009/a04199/petsc MANPATH=: PJM_PK_ex_pipe_state=0 PJM_LLIO_SIO_READ_CACHE=off PJM_PK_freq=2000 MODULEPATH=/work/system/modulefiles PJM_NODE_CPUTIME_LIMIT=18446744073709551615 PJM_PK_ex_pipe_state_min=0 LOGNAME=a04199 PJM_ENVIRONMENT=INTERACT MODULEPATH_modshare=/work/system/modulefiles:1 PJM_PK_knob_io=SYSTEM PJM_LLIO_PERF=off PJM_SHELL=/bin/bash PJM_LLIO_CN_CACHE_SIZE=134217728 PATH=/opt/FJSVxtclanga/tcsds-1.2.31/bin:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/home/ra010009/a04199/.local/bin:/home/ra010009/a04199/bin _LMFILES_=/work/system/modulefiles/lang/tcsds-1.2.31 PJM_LLIO_UNCOMPLETED_FILEINFO_PATH=/vol0004/ra010009/a04199/petsc/STDIN.6302082.err PJM_LLIO_STRIPE_SIZE=2097152 MODULESHOME=/usr/share/Modules PETSC_DIR=/home/ra010009/a04199/petsc HISTSIZE=1000 PJM_PK_retention_state=0 PJM_PK_throttling_state=0 PJM_PROC_BY_NODE=1 PJM_PK_ex_pipe_state_max=1 LESSOPEN=||/usr/bin/lesspipe.sh %s PJM_MPI_SHAPE_X=1 BASH_FUNC_module%%=() { _module_raw "$@" 2>&1 } BASH_FUNC__module_raw%%=() { unset _mlshdbg; if [ "${MODULES_SILENT_SHELL_DEBUG:-0}" = '1' ]; then case "$-" in *v*x*) set +vx; _mlshdbg='vx' ;; *v*) set +v; _mlshdbg='v' ;; *x*) set +x; _mlshdbg='x' ;; *) _mlshdbg='' ;; esac; fi; unset _mlre _mlIFS; if [ -n "${IFS+x}" ]; then _mlIFS=$IFS; fi; IFS=' '; for _mlv in ${MODULES_RUN_QUARANTINE:-}; do if [ "${_mlv}" = "${_mlv##*[!A-Za-z0-9_]}" -a "${_mlv}" = "${_mlv#[0-9]}" ]; then if [ -n "`eval 'echo ${'$_mlv'+x}'`" ]; then _mlre="${_mlre:-}${_mlv}_modquar='`eval 'echo ${'$_mlv'}'`' "; fi; _mlrv="MODULES_RUNENV_${_mlv}"; _mlre="${_mlre:-}${_mlv}='`eval 'echo ${'$_mlrv':-}'`' "; fi; done; if [ -n "${_mlre:-}" ]; then eval `eval ${_mlre} /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl bash '"$@"'`; else eval `/usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl bash "$@"`; fi; _mlstatus=$?; if [ -n "${_mlIFS+x}" ]; then IFS=$_mlIFS; else unset IFS; fi; unset _mlre _mlv _mlrv _mlIFS; if [ -n "${_mlshdbg:-}" ]; then set -$_mlshdbg; fi; unset _mlshdbg; return $_mlstatus } BASH_FUNC_switchml%%=() { typeset swfound=1; if [ "${MODULES_USE_COMPAT_VERSION:-0}" = '1' ]; then typeset swname='main'; if [ -e /usr/share/Modules/libexec/modulecmd.tcl ]; then typeset swfound=0; unset MODULES_USE_COMPAT_VERSION; fi; else typeset swname='compatibility'; if [ -e /usr/share/Modules/libexec/modulecmd-compat ]; then typeset swfound=0; MODULES_USE_COMPAT_VERSION=1; export MODULES_USE_COMPAT_VERSION; fi; fi; if [ $swfound -eq 0 ]; then echo "Switching to Modules $swname version"; source /usr/share/Modules/init/bash; else echo "Cannot switch to Modules $swname version, command not found"; return 1; fi } BASH_FUNC_ml%%=() { module ml "$@" } _=../arch-arm.py LC_CTYPE=C.UTF-8 Files in path provided by default path /opt/FJSVxtclanga/tcsds-1.2.31/bin: mpiFCC mpiexec mpifcc mpifrt mpijavac mpijavac.pl mpirun ompi-clean ompi_info opal_wrapper orte-clean orted orterun fapp fapppx fipp fipppx fjdbg_summary gdb_wrapper intergdb .default_opt_clang .help_clang_FCC .help_clang_fcc .help_frt .help_trad_FCC .help_trad_fcc FCC checklog fcc fcvendian flist frt hwpfctl jwd_fort /usr/share/Modules/bin: add.modules createmodule.py createmodule.sh mkroot /usr/local/bin: lfs /usr/bin: nl-qdisc-list catchsegv nl-route-add gencat nl-route-delete getconf nl-route-get getent nl-route-list iconv tbl ldd nl-rule-list locale nl-tctree-list localedef nl-util-addr makedb cmp pigz pldd diff less sotruss diff3 sprof sdiff tzselect cpio awk alias trust bash whiptail bashbug teamnl bashbug-64 troff bg zsoelim cd gdbm_dump command chacl fc getfacl fg gdbm_load getopts gdbmtool hash unxz gawk jobs xz tabs read setfacl sh xzcat type xzcmp ulimit xzdec umask xzdiff unalias xzegrep wait xzfgrep gpg-error xzgrep info xzless xmlcatalog xzmore xmllint eqn tic xmlwf geqn toe p11-kit gneqn find gnroff xargs ex sed gpic tput egrep groff fgrep grops grep grotty which gsoelim file nl-classid-lookup genl-ctrl-list nl-class-list tset idiag-socket-details gtbl curl nf-ct-add nl-cls-add gzip nf-ct-events gtroff nf-ct-list neqn zcat nf-exp-add nl-cls-delete nf-exp-delete nroff nf-exp-list pic zcmp nf-log post-grohtml nf-monitor pre-grohtml nf-queue preconv nl-addr-add nl-cls-list znew nl-addr-delete nl-fib-lookup nl-addr-list nl-neigh-delete nl-class-add nl-link-enslave nl-class-delete view rvi nl-link-ifindex2name nl-neigh-list nl-link-list nl-monitor rview nl-link-name2ifindex nl-neightbl-list nl-link-release soelim nl-link-set nl-pktloc-lookup nl-link-stats nl-qdisc-add free nl-list-caches nl-qdisc-delete nl-list-sockets nl-neigh-add vi base64 efivar basename unpigz cat shuf lessecho chcon lesskey chgrp lesspipe.sh chmod brotli chown ndptool cksum captoinfo comm sort clear cp stat infocmp csplit infotocap cut stty reset date sum ipcalc dd sync sha1hmac df tac sha224hmac dir tail sha256hmac dircolors sha384hmac dirname sha512hmac du tee db_archive dbus-monitor test db_checkpoint echo tr db_deadlock env true db_dump expand db_dump185 dbus-send tty db_hotbackup expr uniq db_load [ readlink db_log_verify factor db_printlog false db_recover dbus-uuidgen vdir db_replicate fmt wc db_stat fold who db_tuner groups db_upgrade head yes db_verify arch realpath debuginfod-find ca-legacy sg make-dummy-cert hostid openssl b2sum kmod renew-dummy-cert id chvt gunzip install gzexe join open zdiff link cal zegrep ln chrt zfgrep logname zforce ls col zgrep md5sum zless mkdir zmore mkfifo pgrep mknod pidof mktemp pkill mv ipcs pmap rm ps nice kill pwdx nl last skill nohup slabtop nproc snice numfmt tload rmdir top od look uptime paste vmstat runcon w pathchk watch seq rpm pinky rpm2archive pr lsns rpm2cpio printenv rpmdb printf rpmkeys ptx mesg rpmquery pwd more rpmverify base32 raw grub2-editenv csslint-0.6 sha1sum grub2-mkpasswd-pbkdf2 dbus-update-activation-environment sha224sum sha256sum sha384sum sha512sum shred sleep split stdbuf timeout touch truncate tsort uname unexpand unlink users whoami chage gpasswd lastlog newgidmap newgrp newuidmap lscpu gio update-ca-trust unversioned-python ping dbus-cleanup-sockets namei dbus-daemon lsipc tmon dbus-run-session lslocks g13 dbus-test-tool nsenter dumpkeys prlimit kbd_mode rename loadkeys renice setfont lslogins gpg unicode_start lsmem gpg2 unicode_stop rev gpgv deallocvt script fgconsole scriptreplay getkeycodes setarch kbdinfo setpriv kbdrate setsid loadunimap setterm mapscrn su dnf openvt taskset psfaddtable ul lzop psfgettable mcookie yum psfstriptable umount psfxtable uname26 setkeycodes unshare setleds utmpdump setmetamode uuidgen setvtrgb mount scp showconsolefont uuidparse showkey wall sftp vlock wdctl pwmake whereis pwscore write dracut pydoc3.6 lsinitrd pyvenv-3.6 mkinitrd mountpoint ssh linux-boot-prober fips-finish-install os-prober fips-mode-setup chmem gettext colcrt envsubst colrm gettext.sh column msgattrib dmesg msgcat eject msgcmp fallocate msgcomm fincore msgconv findmnt msgen flock msgexec getopt msgfilter hexdump msgfmt ionice msggrep ipcmk msginit ipcrm msgmerge isosize msgunfmt lastb msguniq linux32 ngettext linux64 grub2-file logger recode-sr-latin login xgettext lsblk grub2-menulst2cfg evmctl kdumpctl update-crypto-policies usleep sudo grub2-mkimage dbus-binding-tool grub2-mkrelpath secret-tool man grub2-script-check pinentry ar gapplication iio_generic_buffer gdbus pinentry-curses gio-querymodules-64 secon ssh-add glib-compile-schemas lsiio gsettings semodule_expand as update-mime-database lsgpio busctl pchrt coredumpctl hostnamectl ptaskset journalctl gpgsm localectl kbxutil dwp loginctl dirmngr resolvectl watchgnupg systemctl grub2-fstest systemd-analyze semodule_link nm systemd-ask-password dirmngr-client systemd-cat grub2-glue-efi systemd-cgls grub2-kbdcomp systemd-cgtop grub2-mkfont size systemd-delta grub2-mklayout systemd-detect-virt grub2-mknetdir systemd-escape grub2-mkrescue systemd-firstboot grub2-mkstandalone systemd-inhibit semodule_package gtar systemd-machine-id-setup grub2-syslinux2cfg systemd-mount fipscheck ld systemd-notify fipshmac tar systemd-path ssh-keygen m4 systemd-resolve gpg-agent systemd-run semodule_unpackage zip systemd-socket-activate passwd ssh-agent systemd-stdio-bridge mokutil perl systemd-sysusers cpupower git systemd-tmpfiles lchsh gpg-connect-agent systemd-tty-ask-password-agent gpio-event-mon systemd-umount gpg-zip timedatectl gpgconf bootctl gpio-hammer xxd kernel-install iio_event_monitor systemd-hwdb gpgparsemail udevadm consolehelper vgdb modulemd-validator-v1 gpgsplit pkaction gpgv2 pkcheck dnf-3 pkexec rhn_register pkttyagent pflags ssh-copy-id pkla-admin-identities dbxtool ssh-keyscan pkla-check-authorization bond2team run-parts plymouth cronnext teamd crontab teamdctl tracepath json_verify nm-online machinectl nmcli firewall-cmd lchfn json_reformat kvm_stat delv sg_reassign zipinfo sss_ssh_authorizedkeys sg_referrals zipcloak sss_ssh_knownhostsproxy sg_rep_zones zipnote rsyslog-recover-qi.pl sg_requests zipsplit firewall-offline-cmd sg_stpg aulast sg_stream_ctl aulastlog sg_sync ausyscall sg_test_rwbuf auvirt sg_timestamp authselect sg_turs chronyc sg_unmap nmtui sg_safte dig nmtui-connect sg_verify nmtui-edit sg_rtpg host nmtui-hostname sg_vpd rngtest sg_wr_mode cvtsudoers sg_write_buffer sudoedit sg_write_long sudoreplay sg_write_same chattr sg_write_verify lsattr sg_write_x cpp apropos sg_xcopy catman sg_zone lexgrog sginfo mandb sgm_dd manpath sgp_dd whatis sg_sanitize rescan-scsi-bus.sh dnsdomainname scsi-rescan sg_sat_identify scsi_logging_level domainname scsi_mandat sg_sat_phy_event scsi_readcap hostname scsi_ready nisdomainname scsi_satl ypdomainname scsi_start lsscsi scsi_stop sg_sat_read_gplog scsi_temperature satyr sg_bg_ctl sg_reset crash sg_compare_and_write sg_sat_set_features sg_copy_results addr2line sg_dd sg_scan idn sg_decode_sense sg_seek make sg_emc_trespass libtar sg_format sg_senddiag lz4 sg_get_config sg_ses lz4c sg_get_lba_status c++filt sg_ident gprof sg_inq elfedit sg_logs ld.bfd sg_luns ld.gold sg_map objdump sg_map26 objcopy sg_modes ranlib sg_opcodes readelf sg_persist strip sg_prevent strings sg_raw funzip sg_rbuf unzipsfx sg_rdac zipgrep sg_read sg_start lsmd sg_read_attr sg_reset_wp fc-cache sg_read_block_limits sg_ses_microcode sg_read_buffer gdk-pixbuf-query-loaders-64 sg_read_long unzip sg_readcap eu-addr2line sg_rmsn fc-cache-64 setup-nsssysinit.sh attr gdk-pixbuf-thumbnailer fc-cat fc-conflist fc-list fc-match fc-pattern fc-query fc-scan fc-validate perl5.26.3 patch automake eu-ar pk12util zstd eu-elfclassify automake-1.16 eu-elfcmp signver sscg eu-elfcompress trace-cmd eu-elflint ssltap lua eu-findtextrel crlutil checkpolicy eu-make-debug-archive install-catalog eu-nm sgmlwhich eu-objdump chardetect eu-ranlib gmake eu-readelf lz4cat eu-size unlz4 eu-stack report-cli eu-strings checksctp eu-strip sctp_darn eu-unstrip sctp_status bunzip2 sctp_test bzcat withsctp bzcmp xsltproc bzdiff pkgconf bzegrep reporter-rhtsupport bzfgrep pkg-config bzgrep luac cockpit-bridge bzip2 encguess bzip2recover reporter-ureport bzless abrt-action-notify bzmore piconv jjs git-receive-pack abrt-handle-upload git-shell pod2man orbd git-upload-archive pod2text rmid git-upload-pack pod2usage mcpp callgrind_annotate perldoc xrdb callgrind_control abrt-watch-log cg_annotate abrt-dump-oops cg_diff abrt-dump-xorg cg_merge appstream-util ms_print abrt-cli valgrind autoconf xset valgrind-di-server autoheader c89 valgrind-listener appstream-compose arpaname sim_lsmplugin nslookup simc_lsmplugin nsupdate autom4te c99 desktop-file-edit cmsutil sedismod desktop-file-install aarch64-redhat-linux-gnu-pkg-config desktop-file-validate modutil sedispol update-desktop-database autoreconf cc xdg-desktop-icon autoscan gcov xdg-desktop-menu lsmcli xdg-email autoupdate gcc xdg-icon-resource gettextize xdg-mime autopoint xdg-open ifnames stap xdg-screensaver aclocal dwz xdg-settings nss-policy-check dot gtk-update-icon-cache aclocal-1.16 fdp setup-nsssysinit checkmodule certutil java gc aarch64-redhat-linux-gcc-8 abrt-action-analyze-python gxl2gv abrt-action-analyze-xorg xsetpointer java2html abrt-action-save-package-data lefty abrt-action-analyze-oops lneato abrt-dump-journal-oops mm2gv abrt-merge-pstoreoops tred abrt-action-analyze-vmcore xrefresh update-gtk-immodules abrt-action-check-oops-for-alt-component xsetroot source-highlight abrt-action-check-oops-for-hw-error stap-prep neato abrt-dump-journal-xorg audit2allow audit2why chcat sandbox getfattr setfattr unzstd zstdcat zstdgrep zstdless zstdmt keytool pack200 rmiregistry servertool tnameserv policytool unpack200 stapbpf paperconf stap-merge bdftopcf stapdyn fonttosfnt staprun mkfontdir stapsh mkfontscale bcomps ucs2any stap-report nop xorg-x11-fonts-update-dirs acyclic guild ccomps guile circo guile-tools cluster guile2 cpp2html a2x guile2-tools check-regexp rvim gdb-add-index xstdcmap diffimg abrt-action-analyze-backtrace gr2fonttest osage abrt-action-analyze-c gcc-ar dijkstra abrt-action-analyze-ccpp-local fribidi patchwork abrt-action-analyze-core gcc-nm dotty abrt-action-analyze-vulnerability gcc-ranlib dot2gxl abrt-action-generate-backtrace gcov-dump edgepaint abrt-action-generate-core-backtrace gcov-tool gml2gv abrt-action-install-debuginfo pango-list prune abrt-action-list-dsos aarch64-redhat-linux-gcc vim abrt-action-perform-ccpp-analysis pango-view sccmap abrt-action-trim-files gtk-query-immodules-2.0-64 abrt-dump-journal-core source-highlight-esc.sh cairo-sphinx graphml2gv sealert gv2gml iceauth gv2gxl sessreg gvcolor showrgb gvgen xgamma gvmap xhost gvmap.sh xinput gvpack xkill gvpr gdb xmodmap gxl2dot xrandr intltool-extract ctags sfdp lsdiff bc source-highlight-settings interdiff dc src-hilite-lesspipe.sh twopi unflatten vimdot pkcon pkmon a2x.py asciidoc asciidoc.py gendiff rpmbuild rpmspec vimdiff vimtutor gcore gstack pstack recountdiff at aarch64-redhat-linux-c++ rediff atq aarch64-redhat-linux-g++ c++ g++ libtool libtoolize flex atrm intltool-merge flex++ irb intltool-prepare lex batch intltool-update chsh rdoc intltoolize wget vdo lsusb vdodmeventd blkiomon ri vdodumpconfig blkparse gem vdoforcerebuild lsusb.py vdoformat usb-devices usbhid-dump vdosetuuid tree erb vdostats splitdiff ncat huge_page_setup_helper.py time ruby hugeadm symlinks hugectl strace hugeedit strace-log-merge pagesize blkrawverify 2to3 insights-client nc libmpgctl redhat-access-insights rsync quota rpmsign quotasync ac ab authvar lastcomm efikeygen numad efisiglist memhog pesigcheck migratepages pesign blktrace pip3 pesign-client bno_plot.py ptar hwloc-annotate btrace pip2 hwloc-assembler unwrapdiff ltrace hwloc-assembler-remote migspeed hwloc-bind numactl hwloc-calc btrecord h2ph hwloc-compress-dir numademo hwloc-diff btreplay h2xs hwloc-distances btt diffstat hwloc-distrib bison byacc hwloc-gather-topology numastat hwloc-info netstat hwloc-ls nano cpan hwloc-patch rnano hwloc-ps verify_blkparse lstopo-no-graphics locate pinfo updatedb combinediff lsof runc dehtmldiff ed go editdiff red hsdb espdiff dos2unix filterdiff mac2unix fixcvsdiff unix2dos flipdiff unix2mac grepdiff chfn yacc hunspell xsubpp prove tclsh tclsh8.6 perlivp docker instmodsh nspr-config fuse-overlayfs gst-inspect-1.0 bwrap idlj gst-launch-1.0 ttmkfdir jar gst-stats-1.0 qemu-img jcmd gst-typefind-1.0 libnetcfg aserver qemu-io jdb nss-util-config config_data enchant qemu-nbd jhat enchant-lsmod enc2xs json_pp cpan-mirrors zipdetails orc-bugreport compile_et nss-softokn-config slirp4netns otfdump pod2html m17n-conv shasum otflist notify-send otftobdf papi_avail pip-2 jmap papi_clockres pip-2.7 jps papi_command_line keyctl appletviewer papi_component_avail otfview papi_cost ebrowse papi_decode pip2.7 rmic papi_error_codes easy_install-2 papi_event_chooser easy_install-2.7 papi_mem_info pydoc2 xjc papi_multiplex_cost pydoc2.7 perf papi_native_avail python2 f95 papi_version python2.7 sadf papi_xml_event_info dotlockfile 2to3-3.6 emacsclient pathfix.py etags.emacs htdbm gctags htdigest dconf htpasswd gofmt httxt2dbm broadwayd logresolve gtk-launch crc32 fftw-wisdom corelist WebKitWebDriver qemu-keymap pl2pm sar qemu-pr-helper emacs-26.1 sqlite3 fftwf-wisdom rpcbind fftw-wisdom-to-conf rpcinfo splain rftp easy_install-3.6 fftwl-wisdom python3.6 nss-config python3.6m python3 pip-3 easy_install-3 pydoc3 pydoc-3 pyvenv-3 buildah pip-3.6 skopeo pip3.6 cygdb-2 dtrace cygdb-2.7 ptardiff cython-2 ptargrep perlbug zsh pcre2-config cython-2.7 pcre-config perlthanks iasl ncurses6-config podselect tftp ncursesw6-config cythonize-2 gss-client python2-config krb5-config cythonize-2.7 sim_client python2.7-config uuclient javac podchecker csh ldapmodify gtk-query-immodules-3.0-64 clhsdb extcheck jarsigner javadoc javah javap jconsole jdeps jinfo jrunscript jsadebugd jstack jstat jstatd native2ascii schemagen serialver wsgen wsimport acpinames ipmi_ui acpisrc ipmicmd acpixtract ipmish ldapurl openipmi_eventd telnet openipmicmd tcsh openipmish swig rmcp_ping netaddr3 solterm nmap fusermount ldapwhoami ulockmgr_server nping gfortran event_rpcgen.py rpmgraph curl-config gdbus-codegen ldapmodrdn glib-compile-resources omshell glib-genmarshal chrpath glib-gettextize acpibin glib-mkenums acpidump gobject-query ksh93 gresource rksh gtester acpiexamples gtester-report acpiexec python3.6-config ldappasswd python3.6m-aarch64-config acpihelp python3.6m-config python3-config shcomp xml2-config ipmitool cifsiostat iperf3 iostat memusage mpstat memusagestat pidstat mtrace tapestat pcprofiledump sensors ldapsearch sensors-conf-convert xtrace envml modulecmd ftp autoexpect pftp dislocate emacs expect ftp-rfc kibitz lpunlock mkpasswd passmass rlogin-cwd timed-read timed-run unbuffer weather xkibitz killall prtstat pslog pstree pstree.x11 ldapadd ldapcompare ldapdelete ldapexop ksh etags python iso-info docker-containerd activate-global-python-argcomplete docker-containerd-ctr cd-read docker-containerd-shim udisksctl docker-init iso-read docker-proxy gcr-viewer docker-runc osinfo-db-export dockerd osinfo-db-import editsrat mmc-tool modulemd-validator osinfo-db-path mmdblookup gpgme-json osinfo-db-validate osinfo-detect osinfo-query alt-java xpmemctl slabinfo cd-paranoia mpiexec.tcs_intel virt-clone pjexe virt-install pjpbind virt-xml pjrsh page_owner_sort pjshowip vdo-by-dev plestat jfr plexec python-argcomplete-tcsh libpng-config register-python-argcomplete libpng16-config isodebug png-fix-itxt pngfix genisoimage freetype-config ccmake ccmake3 cmake cmake3 cpack cpack3 ctest ctest3 cups-config xospastop pjaexe isodump gpg-wks-server isoinfo systemd-nspawn certtool danetool gnutls-cli isovfy gnutls-cli-debug gnutls-serv ocsptool p11tool psktool srptool tpmtool virsh pitchplay virt-host-validate readmult virt-pki-validate mkisofs virt-xml-validate mkhybrid qemu-edid osinfo-install-script qemu-trace-stap cd-drive cd-info cdda-player python-argcomplete-check-easy-install-script llio_transfer fefs_failover fefsstatd lfs lfs_migrate llobdstat llstat plot-llstat virt-qemu-run jq dbpmda pcp pmafm pmdate pmdiff pmdumplog pmevent pmfind pmgenmap pmie pmie2col pmieconf pminfo pmjson pmlc pmlogcheck pmlogconf pmlogextract pmlogger pmloglabel pmlogmv pmlogsize pmlogsummary pmprobe pmpython pmseries pmsocks pmstat pmstore pmtrace pmval eclair eclair-dump-backtrace.exp mcexec mcinspect mcps mcstat vmcore2mckdump run-singularity singularity cstool /usr/local/sbin: /usr/sbin: cracklib-check mkfs build-locale-archive depmod zdump fdformat zic insmod ldconfig lsmod iconvconfig modinfo capsh modprobe getcap rmmod getpcaps weak-modules setcap dmstats halt install-info grub2-get-kernel-settings fix-info-dir faillock chkconfig grub2-set-bootflag alternatives grub2-set-default update-alternatives mkhomedir_helper ethtool pam_console_apply mksquashfs pam_timestamp_check unsquashfs fdisk nft pwhistory_helper ip6tables grub2-set-password ip6tables-restore saslpasswd2 findfs ip6tables-restore-translate grub2-setpassword ip6tables-save chroot init ip6tables-translate unix_chkpwd iptables adduser tcsd iptables-apply chgpasswd ping iptables-restore sysctl fsck iptables-restore-translate chpasswd lid iptables-save groupadd arpd iptables-translate groupdel genl xtables-monitor groupmems ip xtables-nft-multi unix_update ebtables groupmod rdma ebtables-restore grpck rtpr ebtables-save addpart ipset agetty avcstat blkdiscard getenforce blkid getsebool grpconv ss matchpathcon grpunconv tipc sefcontext_compile newusers ifup selabel_digest pwck fsck.cramfs selabel_lookup kpartx fsck.minix selabel_lookup_best_match blkdeactivate sssd selabel_partial_match dmfilemapd fsfreeze selinux_check_access pwconv sshd selinuxconlist pwunconv rngd selinuxdefcon useradd lshw selinuxenabled userdel lvm selinuxexeccon blkzone setenforce blockdev dmidecode cfdisk hardlink chcpu hdparm usermod lvs sasldblistusers2 cracklib-format vigr fstrim cracklib-packer vipw hwclock cracklib-unpacker dmsetup ldattach create-cracklib-dict clock mkdict ctrlaltdel packer delpart pidof installkernel losetup mkfs.cramfs mkfs.minix mkswap nologin partx pivot_root readprofile resizepart pvck rfkill rtcwake runuser sfdisk sulogin swaplabel swapoff swapon switch_root wipefs zramctl grubby service grub2-install grub2-sparc64-setup grub2-mkconfig applygnupgdefaults grub2-probe grub2-ofpathname grub2-reboot gluster pvs grub2-rpm-sort ifdown xfs_mkfile grub2-switch-to-blscfg g13-syshelp poweroff rhn-profile-sync reboot rhn_check-3.6 resolvconf rhnsd runlevel rhn_check shutdown rhnreg_ks-3.6 telinit rhn_register-3.6 udevadm logrotate crond rhn-channel anacron rhn_register arping rhnreg_ks clockdiff spacewalk-channel ifenslave plymouthd ping6 sss_cache rdisc tuned-adm tracepath rsyslogd tracepath6 iscsiuio vgck NetworkManager pxkrm-libvirt-setup lchage kexec lgroupadd makedumpfile lgroupdel mkdumprd lgroupmod vmcore-dmesg lnewusers tuned lpasswd firewalld luseradd auditd luserdel auditctl lusermod augenrules syspurpose aureport fixfiles dhclient vgs genhomedircon ausearch load_policy autrace restorecon addgnupghome quot restorecon_xattr chronyd semodule visudo sestatus irqbalance setfiles parted setsebool partprobe virt-what fsck.xfs bridge mkfs.xfs ctstat xfs_admin devlink xfs_bmap ifcfg xfs_copy ifstat xfs_db lnstat xfs_fsr nstat xfs_estimate routef xfs_freeze routel xfs_growfs rtacct xfs_info rtmon xfs_io rtstat dhclient-script unbound-anchor xfs_mdrestore userhelper xfs_logprint timedatex xfs_metadump consoletype xfs_spaceman genhostid rhn-profile-sync-3.6 ether-wake sa spacewalk-channel-3.6 dmeventd abrt-dbus plymouth-set-default-theme xfs_ncheck xfs_quota xfs_repair xfs_rtcp thin_restore badblocks thin_rmap debugfs thin_trim e2freefrag fsadm e2image lvchange e2undo lvconvert e4crypt lvcreate e4defrag lvdisplay filefrag lvextend fuse2fs lvmconfig logsave cache_dump arp mklost+found lvmdiskscan resize2fs lvmdump dumpe2fs lvmpolld e2mmpstatus lvmsadc e2fsck lvmsar fsck.ext2 lvreduce fsck.ext3 lvremove fsck.ext4 lvrename e2label lvresize tune2fs lvscan mke2fs pvchange mkfs.ext2 pvcreate mkfs.ext3 pvdisplay mkfs.ext4 pvmove accessdb pvremove efibootdump pvresize efibootmgr pvscan iprconfig vgcfgbackup iprdbg vgcfgrestore iprdump vgchange iprinit vgconvert iprsos vgcreate iprupdate vgdisplay dosfsck vgexport dosfslabel vgextend fatlabel vgimport fsck.fat vgimportclone fsck.msdos vgmerge fsck.vfat vgmknodes mkdosfs vgreduce mkfs.fat vgremove mkfs.msdos vgrename mkfs.vfat vgscan adcli cache_metadata_size ddns-confgen cache_repair mtr dnssec-checkds cache_restore dnssec-coverage cache_writeback dnssec-dsfromkey era_check atd dnssec-importkey era_dump nscd dnssec-keyfromlabel era_invalidate dnssec-keygen era_restore criu dnssec-keymgr pdata_tools dnssec-revoke thin_check dnssec-settime thin_delta dnssec-signzone thin_dump dnssec-verify vgsplit genrandom thin_ls isc-hmac-fixup thin_metadata_size named-checkzone thin_repair named-compilezone lspci nsec3hash setpci tsig-keygen cache_check abrt-server update-pciids abrt-install-ccpp-hook abrt-configuration abrt-auto-reporting abrtd abrt-harvest-pstoreoops abrt-harvest-vmcore semanage remotectl paperconfig sedispatch setroubleshootd xfsdump xfsinvutil xfsrestore convertquota edquota quotacheck quotaoff quotaon quotastats repquota setquota xqmstats sosreport kpatch smartctl smartd update-smart-drivedb realm accton dump-acct dump-utmp rpc.nfsd ifconfig rpcdebug ipmaddr showmount iptunnel sm-notify mii-diag psvd start-statd mii-tool nslcd nameif fancontrol plipconfig pwmconfig route sensors-detect slattach fuser mtr-packet portrelease mdadm portreserve mdmon qb-blackbox raid-check dhcpd ledctl xinetd ledmon in.tftpd iptstate in.telnetd cryptsetup bpftool atrun vsftpd tcpdump tcpslice pmsetjobinfo ksmtuned gssproxy gss-server sim_server uuserver rpc.idmapd key.dns_resolver request-key apachectl fcgistarter rpc.mountd htcacheclean httpd rotatelogs suexec mount.fuse mount.nfs mount.nfs4 nfsdcltrack rpc.statd umount.nfs umount.nfs4 blkmapd exportfs mountstats nfsconf nfsconvert nfsidmap nfsiostat nfsref nfsstat rpc.gssd pmsetstats rpcbind rpcinfo padumpmgr paclone paeventadm pxinst paledctl pxinstd pamonitor_notice ibportstate pamonitoradm ibstatus pamopluginadm perfquery xos_warmreboot __xos_make_hidden_file.sh papwradm fjsnap papwrctl psvctl parender parscunitadm nfsdcld nfsdclddb cbq paserviceadm nfsdclnts tc pashowclst pasnap pastart pastop pmexe pmgather _parscunit_client pmscatter _pasetbootparam pxeventd pxmonitor_masterd _pashowhard _pmexe pxmonitor_slaved pxmonitor_subd _pmgather _pmscatter pachecker pxsystemadm pxsystemadm_py2 pxnrd paclstmgr paconsole pxkrm-storage-setup pxsrd pxsystemadm_py3 pxpwrd pleio plepmix plesnap pxpled pxkrmctl rpc.rquotad ihkconfig pxpwrm_bobcapd bind_single_syscore ihkmond lustre_rsync routerstat iscsi-iname iscsiadm iscsid iscsistart libvirtd virtlockd virtlogd radvd radvdump dnsmasq lsmdev cgdisk fixparts gdisk sgdisk ihkosctl pluginviewer saslauthd mcreboot.sh testsaslauthd virtproxyd mcstop+release.sh virtstoraged virtnetworkd virtnwfilterd virtsecretd virtnodedevd virtqemud virtinterfaced skdump sktest umount.udisks2 llio_rtab lliosnap _fefs_mount _fefs_purge evict_client fefs_checkstatus fefs_cqos_check.sh fefs_ha fefs_maintrouter fefs_mkfs fefs_mount fefs_rtab fefs_setup fefs_sync fefs_umount fefs_yaml2csv force_intr mount.lustre fefsconfig fefssnap ko2iblnd-probe l_getidentity lctl ldev ldlm_debug_upcall lhsmtool_posix ll_decode_linkea llverfs lnetctl lst lustre_o2ibs_config lustre_rmmod mdevctl lustre_routes_config lustre_routes_conversion Warning accessing /home/ra010009/a04199/.local/bin gives errors: [Errno 2] No such file or directory: '/home/ra010009/a04199/.local/bin' Warning accessing /home/ra010009/a04199/bin gives errors: [Errno 2] No such file or directory: '/home/ra010009/a04199/bin' ============================================================================================= TESTING: configureExternalPackagesDir from config.framework(config/BuildSystem/config/framework.py:967) child config.utilities.macosFirewall 0.000009 ============================================================================================= TESTING: configureDebuggers from config.utilities.debuggers(config/BuildSystem/config/utilities/debuggers.py:21) Find a default debugger and determine its arguments Executing: uname -s stdout: Linux Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/gdb...not found Checking for program /usr/share/Modules/bin/gdb...not found Checking for program /usr/local/bin/gdb...not found Checking for program /usr/bin/gdb...found Defined make macro "GDB" to "/usr/bin/gdb" Defined "USE_DEBUGGER" to ""gdb"" Executing: uname -s stdout: Linux Defined make macro "DSYMUTIL" to "true" Executing: uname -s stdout: Linux child config.utilities.debuggers 0.039355 ============================================================================================= TESTING: configureDirectories from PETSc.options.petscdir(config/PETSc/options/petscdir.py:23) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 0 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 15 #define PETSC_VERSION_SUBMINOR 0 #define PETSC_VERSION_PATCH 0 #define PETSC_VERSION_DATE "unknown" #define PETSC_VERSION_GIT "unknown" #define PETSC_VERSION_DATE_GIT "unknown" #define PETSC_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_ PETSC_VERSION_EQ #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ child PETSc.options.petscdir 0.023787 ============================================================================================= TESTING: getDatafilespath from PETSc.options.dataFilesPath(config/PETSc/options/dataFilesPath.py:29) Checks what DATAFILESPATH should be child PETSc.options.dataFilesPath 0.010729 ============================================================================================= TESTING: configureGit from config.sourceControl(config/BuildSystem/config/sourceControl.py:24) Find the Git executable Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/git...not found Checking for program /usr/share/Modules/bin/git...not found Checking for program /usr/local/bin/git...not found Checking for program /usr/bin/git...found Defined make macro "GIT" to "git" Executing: git --version stdout: git version 2.27.0 ============================================================================================= TESTING: configureMercurial from config.sourceControl(config/BuildSystem/config/sourceControl.py:35) Find the Mercurial executable Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/hg...not found Checking for program /usr/share/Modules/bin/hg...not found Checking for program /usr/local/bin/hg...not found Checking for program /usr/bin/hg...not found Checking for program /usr/local/sbin/hg...not found Checking for program /usr/sbin/hg...not found Checking for program /home/ra010009/a04199/.local/bin/hg...not found Checking for program /home/ra010009/a04199/bin/hg...not found Checking for program /home/ra010009/a04199/petsc/lib/petsc/bin/win32fe/hg...not found child config.sourceControl 0.024660 ============================================================================================= TESTING: configureInstallationMethod from PETSc.options.petscclone(config/PETSc/options/petscclone.py:20) lib/petsc/bin/maint exists. This appears to be a repository clone .git directory exists Executing: ['git', 'describe', '--match=v*'] stdout: v3.15.0-147-g35973a90ab Executing: ['git', 'log', '-1', '--pretty=format:%H'] stdout: 35973a90abcd8a78bb0c614bfac3956127cfae0b Executing: ['git', 'log', '-1', '--pretty=format:%ci'] stdout: 2021-04-13 09:07:58 -0400 Executing: ['git', 'rev-parse', '--abbrev-ref', 'HEAD'] stdout: adams/landau-gpu-opt Defined "VERSION_GIT" to ""v3.15.0-147-g35973a90ab"" Defined "VERSION_DATE_GIT" to ""2021-04-13 09:07:58 -0400"" Defined "VERSION_BRANCH_GIT" to ""adams/landau-gpu-opt"" child PETSc.options.petscclone 1.334066 ============================================================================================= TESTING: setNativeArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:31) ============================================================================================= TESTING: configureArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:43) Checks PETSC_ARCH and sets if not set ============================================================================================= Warning: PETSC_ARCH from environment does not match command-line or name of script. Warning: Using from command-line or name of script: arch-arm, ignoring environment: arch-ci-linux-gcc-opt ============================================================================================= No previous hashfile found Setting hashfile: arch-arm/lib/petsc/conf/configure-hash Deleting configure hash file: arch-arm/lib/petsc/conf/configure-hash Unable to delete configure hash file: arch-arm/lib/petsc/conf/configure-hash child PETSc.options.arch 1.871029 ============================================================================================= TESTING: setInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:39) setup installDir to either prefix or if that is not set to PETSC_DIR/PETSC_ARCH Defined make macro "PREFIXDIR" to "/home/ra010009/a04199/petsc/arch-arm" ============================================================================================= TESTING: saveReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:85) ============================================================================================= TESTING: cleanConfDir from PETSc.options.installDir(config/PETSc/options/installDir.py:78) ============================================================================================= TESTING: configureInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:62) Makes installDir subdirectories if it does not exist for both prefix install location and PETSc work install location Changed persistence directory to /home/ra010009/a04199/petsc/arch-arm/lib/petsc/conf ============================================================================================= TESTING: restoreReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:98) child PETSc.options.installDir 0.008444 ============================================================================================= TESTING: setExternalPackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:15) ============================================================================================= TESTING: cleanExternalpackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:22) child PETSc.options.externalpackagesdir 0.002930 ============================================================================================= TESTING: configureCLanguage from PETSc.options.languages(config/PETSc/options/languages.py:27) Choose whether to compile the PETSc library using a C or C++ compiler C language is C Defined "CLANGUAGE_C" to "1" Defined make macro "CLANGUAGE" to "C" child PETSc.options.languages 0.003891 ============================================================================================= TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1957) ============================================================================================= TESTING: checkEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1987) ============================================================================================= TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:1927) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ============================================================================================= TESTING: requireMpiLdPath from config.setCompilers(config/BuildSystem/config/setCompilers.py:1948) OpenMPI wrappers require LD_LIBRARY_PATH set ============================================================================================= TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:526) Initialize the compiler and linker flags Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Initialized HIPFLAGS to Initialized HIPFLAGS to Initialized LDFLAGS to Initialized SYCLCXXFLAGS to Initialized SYCLCXXFLAGS to Initialized LDFLAGS to Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Initialized CPPFLAGS to Initialized FPPFLAGS to Initialized CUDAPPFLAGS to -Wno-deprecated-gpu-targets Initialized CXXPPFLAGS to Initialized HIPPPFLAGS to -Wno-deprecated-gpu-targets Initialized SYCLPPFLAGS to -Wno-deprecated-gpu-targets Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized HIPC_LINKER_FLAGS to [] Initialized SYCLCXX_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ============================================================================================= TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:701) Locate a functional C compiler Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/mpifcc...found Defined make macro "CC" to "mpifcc" ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm ======== Checking running linked program ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o Testing executable /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest to see if it can be run Executing: /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest Executing: mpifcc --version stdout: fcc (FCC) 4.5.0 20210304 simulating gcc version 6.1 Copyright FUJITSU LIMITED 2019-2021 Since MPI c compiler starts with mpi, force searches for other compilers to only look for MPI compilers ============================================================================================= TESTING: checkCPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:740) Locate a functional C preprocessor Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/mpifcc...found Defined make macro "CPP" to "mpifcc -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : ============================================================================================= TESTING: checkCUDACompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:776) Locate a functional CUDA compiler Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/nvcc...not found Checking for program /usr/share/Modules/bin/nvcc...not found Checking for program /usr/local/bin/nvcc...not found Checking for program /usr/bin/nvcc...not found Checking for program /usr/local/sbin/nvcc...not found Checking for program /usr/sbin/nvcc...not found Checking for program /home/ra010009/a04199/.local/bin/nvcc...not found Checking for program /home/ra010009/a04199/bin/nvcc...not found Checking for program /home/ra010009/a04199/petsc/lib/petsc/bin/win32fe/nvcc...not found Checking for program /Developer/NVIDIA/CUDA-6.5/bin/nvcc...not found Checking for program /home/ra010009/a04199/petsc/lib/petsc/bin/win32fe/nvcc...not found Unable to find programs ['nvcc'] providing listing of the specific search path Warning accessing /Developer/NVIDIA/CUDA-6.5/bin gives errors: must be str, not builtin_function_or_method Checking for program /usr/local/cuda/bin/nvcc...not found Checking for program /home/ra010009/a04199/petsc/lib/petsc/bin/win32fe/nvcc...not found Unable to find programs ['nvcc'] providing listing of the specific search path Warning accessing /usr/local/cuda/bin gives errors: must be str, not builtin_function_or_method ============================================================================================= TESTING: checkCUDAPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:816) Locate a functional CUDA preprocessor ============================================================================================= TESTING: checkHIPCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:850) Locate a functional HIP compiler Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/hipcc...not found Checking for program /usr/share/Modules/bin/hipcc...not found Checking for program /usr/local/bin/hipcc...not found Checking for program /usr/bin/hipcc...not found Checking for program /usr/local/sbin/hipcc...not found Checking for program /usr/sbin/hipcc...not found Checking for program /home/ra010009/a04199/.local/bin/hipcc...not found Checking for program /home/ra010009/a04199/bin/hipcc...not found Checking for program /home/ra010009/a04199/petsc/lib/petsc/bin/win32fe/hipcc...not found Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/share/Modules/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/local/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/local/sbin/opt/rocm/bin/hipcc...not found Checking for program /usr/sbin/opt/rocm/bin/hipcc...not found Checking for program /home/ra010009/a04199/.local/bin/opt/rocm/bin/hipcc...not found Checking for program /home/ra010009/a04199/bin/opt/rocm/bin/hipcc...not found Checking for program /home/ra010009/a04199/petsc/lib/petsc/bin/win32fe/opt/rocm/bin/hipcc...not found ============================================================================================= TESTING: checkHIPPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:886) Placeholder for now ============================================================================================= TESTING: checkSYCLCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:907) Locate a functional SYCL compiler ============================================================================================= TESTING: checkSYCLPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:933) Placeholder for now ============================================================================================= TESTING: checkCxxCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:1020) Locate a functional Cxx compiler Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/mpiFCC...found Defined make macro "CXX" to "mpiFCC" ===== Checking compiler Executing: mpiFCC -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ===== Checking linker Executing: mpiFCC -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpiFCC -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o ===== Checking linker Executing: mpiFCC -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpiFCC -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm ======== Checking running linked program ===== Checking linker Executing: mpiFCC -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpiFCC -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o Testing executable /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest to see if it can be run Executing: /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest Executing: mpiFCC --version stdout: FCC (FCC) 4.5.0 20210304 simulating gcc version 6.1 Copyright FUJITSU LIMITED 2019-2021 ============================================================================================= TESTING: checkCxxPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:1061) Locate a functional Cxx preprocessor Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/mpiFCC...found Defined make macro "CXXPP" to "mpiFCC -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpiFCC -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.cc Preprocess stderr before filtering: : Preprocess stderr after filtering: : ============================================================================================= TESTING: checkFortranCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:1160) Locate a functional Fortran compiler Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/mpifrt...found Defined make macro "FC" to "mpifrt" ===== Checking compiler Executing: mpifrt -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.F90 Successful compile: Source: program main end ===== Checking linker Executing: mpifrt -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: mpifrt -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o ===== Checking linker Executing: mpifrt -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: mpifrt -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm ======== Checking running linked program ===== Checking linker Executing: mpifrt -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: mpifrt -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o Testing executable /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest to see if it can be run Executing: /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest Executing: mpifrt --version stdout: frt (FRT) 4.5.0 20210226 Copyright FUJITSU LIMITED 2019-2021 ============================================================================================= TESTING: checkFortranPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:1197) Locate a functional Fortran preprocessor Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/mpifrt...found Defined make macro "FPP" to "mpifrt -E" Deleting "FPP" Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/mpifrt...found Defined make macro "FPP" to "mpifrt --use cpp32" Deleting "FPP" ============================================================================================= TESTING: checkFortranComments from config.setCompilers(config/BuildSystem/config/setCompilers.py:1219) Make sure fortran comment "!" works ===== Checking compiler Executing: mpifrt -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.F90 Successful compile: Source: program main ! comment end Fortran comments can use ! in column 1 ============================================================================================= TESTING: checkLargeFileIO from config.setCompilers(config/BuildSystem/config/setCompilers.py:1366) ============================================================================================= TESTING: checkArchiver from config.setCompilers(config/BuildSystem/config/setCompilers.py:1465) Check that the archiver exists and can make a library usable by the compiler Executing: ar -V stdout: GNU ar version 2.30-79.el8 Copyright (C) 2018 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar version 2.30-79.el8 Copyright (C) 2018 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/ar...not found Checking for program /usr/share/Modules/bin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/ranlib...not found Checking for program /usr/share/Modules/bin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" Executing: /usr/bin/ar cr /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/libconf1.a /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conf1.o Executing: /usr/bin/ranlib -c /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/libconf1.a Possible ERROR while running ranlib: stderr: /usr/bin/ranlib: invalid option -- 'c' Ranlib is not functional with your archiver. Try --with-ranlib=true if ranlib is unnecessary. Executing: ar -V stdout: GNU ar version 2.30-79.el8 Copyright (C) 2018 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar version 2.30-79.el8 Copyright (C) 2018 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/ar...not found Checking for program /usr/share/Modules/bin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/ranlib...not found Checking for program /usr/share/Modules/bin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib" Executing: /usr/bin/ar cr /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/libconf1.a /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conf1.o Executing: /usr/bin/ranlib /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/libconf1.a ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -L/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -lconf1 Defined make macro "AR_FLAGS" to "cr" Defined make macro "AR_LIB_SUFFIX" to "a" ============================================================================================= TESTING: checkArchiverRecipeArgfile from config.setCompilers(config/BuildSystem/config/setCompilers.py:1529) Checks if AR handles @ notation Executing: /usr/bin/ar cr checkRecipeArgfile.a @checkRecipeArgfile.args Defined make macro "AR_ARGFILE" to "yes" ============================================================================================= TESTING: checkSharedLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1609) Check that the linker can produce shared libraries Executing: uname -s stdout: Linux Checking shared linker mpifcc using flags ['-shared'] Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/mpifcc...found Defined make macro "LD_SHARED" to "mpifcc" Executing: mpifcc --help | head -n 20 stdout: USAGE fccpx [ -Nnoclang ] [ option ... ] filename ... fcc [ -Nnoclang ] [ option ... ] filename ... OPTIONS General compiler options [ -# ] [ -### ] [ -A- ] [ -Aname[(tokens)] ] [ -B{dynamic|static} ] [ -C ] [ -Dname[=tokens] ] [ -E ] [ -H ] [ -Idir ] [ -Ldir ] [ -M ] [ -MD ] [ -MF filename ] [ -MM ] [ -MMD ] [ -MP ] [ -MT target ] [ -Nopt ] [ -P ] [ -Qc ] [ -S ] [ -SSL2 ] [ -SSL2BLAMP ] [ -Uname ] [ -Wtool,arg1[,arg2]... ] [ -Yitem,dir ] [ -c ] [ {-g|-g0} ] [ -lname ] [ -mt ] [ -o pathname ] [ -shared ] Message options [ -V ] [ {-help|--help} ] [ -j ] [ -w ] Optimization options Executing: mpifcc -show stdout: fcc -Kident_mpi -I/opt/FJSVxtclanga/.common/MECA024/include/mpi/fujitsu -pthread -L/opt/FJSVxtclanga/.common/MECA024/lib64 -lmpi -lfjstring_internal Trying C compiler flag -PIC Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -PIC /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: fcc: -P is invalidated because -E is not specified. Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -PIC fcc: -P is invalidated because -E is not specified. Added C compiler flag -PIC Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -PIC /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: fcc: -P is invalidated because -E is not specified. Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest -shared -PIC /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o Possible ERROR while running linker: stderr: fcc: -P is invalidated because -E is not specified. Valid C linker flag -shared ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -PIC /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: fcc: -P is invalidated because -E is not specified. Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/libconftest.so -shared -PIC /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 1 stderr: fcc: -P is invalidated because -E is not specified. /usr/bin/ld: /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o: relocation R_AARCH64_ADR_PREL_PG_HI21 against symbol `stdout@@GLIBC_2.17' which may bind externally can not be used when making a shared object; recompile with -fPIC /usr/bin/ld: /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o(.text+0x18): unresolvable R_AARCH64_ADR_PREL_PG_HI21 relocation against symbol `stdout@@GLIBC_2.17' /usr/bin/ld: final link failed: Bad value Rejected C compiler flag -PIC because it was not compatible with shared linker mpifcc using flags ['-shared'] Trying C compiler flag -fPIC Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -fPIC /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC Added C compiler flag -fPIC Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -fPIC /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest -shared -fPIC /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o Valid C linker flag -shared ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -fPIC /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/libconftest.so -shared -fPIC /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -fPIC /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(void); int main() { int ret = foo(); if (ret) {} ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest -fPIC /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -L/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -lconftest Using shared linker mpifcc with flags ['-shared'] and library extension so Executing: uname -s stdout: Linux Executing: uname -s stdout: Linux ============================================================================================= TESTING: checkPIC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1309) Determine the PIC option for each compiler Executing: mpiFCC --help | head -n 20 stdout: USAGE FCCpx [ -Nnoclang ] [ option ... ] filename ... FCC [ -Nnoclang ] [ option ... ] filename ... OPTIONS General compiler options [ -# ] [ -### ] [ -A- ] [ -Aname[(tokens)] ] [ -B{dynamic|static} ] [ -C ] [ -Dname[=tokens] ] [ -E ] [ -H ] [ -Idir ] [ -Ldir ] [ -M ] [ -MD ] [ -MF filename ] [ -MM ] [ -MMD ] [ -MP ] [ -MT target ] [ -Nopt ] [ -P ] [ -Qc ] [ -S ] [ -SSL2 ] [ -SSL2BLAMP ] [ -Uname ] [ -Wtool,arg1[,arg2]... ] [ -Yitem,dir ] [ -c ] [ {-g|-g0} ] [ -lname ] [ -mt ] [ -o pathname ] [ -shared ] Message options [ -V ] [ {-help|--help} ] [ -j ] [ -w ] [{--brief_diagnos- tics|--no_brief_diagnostics}] [ --diag_error tag[,tag]... ] [ --diag_suppress tag[,tag]... ] [ --display_error_number ] [ Executing: mpiFCC -show stdout: FCC -Kident_mpi -I/opt/FJSVxtclanga/.common/MECA024/include/mpi/fujitsu -pthread -L/opt/FJSVxtclanga/.common/MECA024/lib64 -lmpi_cxx -lmpi -lfjstring_internal Trying Cxx compiler flag -PIC for PIC code Executing: mpiFCC -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -PIC /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.cc Possible ERROR while running compiler: stderr: FCC: -P is invalidated because -E is not specified. Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -PIC FCC: -P is invalidated because -E is not specified. Added Cxx compiler flag -PIC ===== Checking linker Executing: mpiFCC -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -PIC /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.cc Possible ERROR while running compiler: stderr: FCC: -P is invalidated because -E is not specified. Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/libconftest.so -shared -fPIC /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o: relocation R_AARCH64_ADR_PREL_PG_HI21 against symbol `stdout@@GLIBC_2.17' which may bind externally can not be used when making a shared object; recompile with -fPIC /usr/bin/ld: /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o(.text+0x18): unresolvable R_AARCH64_ADR_PREL_PG_HI21 relocation against symbol `stdout@@GLIBC_2.17' /usr/bin/ld: final link failed: Bad value Rejected Cxx compiler flag -PIC because shared linker cannot handle it Trying Cxx compiler flag -fPIC for PIC code Executing: mpiFCC -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -fPIC /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC Added Cxx compiler flag -fPIC ===== Checking linker Executing: mpiFCC -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -fPIC /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/libconftest.so -shared -fPIC /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o Accepted Cxx compiler flag -fPIC for PIC code Executing: mpifrt --help | head -n 20 stdout: USAGE frtpx [ compiler_option ... ] filename ... frt [ compiler_option ... ] filename ... a.out [ -Wl,[ runtime_option ... ] ] OPTIONS The options in the compile command line are the following compiler options, GNU compatible options, or ld options. See ld(1) for the ld options. Compiler Options [ -c ] [ -fmsg_lvl ] [ { -g | -g0 } ] [ { -help | --help } ] [ -lname ] [ -ml=target ] [ -mlcmain=main_program ] [ -mldefault=target ] [ -oexe_file ] [ -shared ] [ -xinl_arg ] [ -Aobj_arg ] [ -Ctyp_arg ] [ -Dname[=tokens] ] [ -E ] [ -Emsg_arg ] [ -Fixed ] [ -Free ] [ -Fwide ] [ -Hdbg_arg ] [ -Idirectory ] [ -Kopt_arg ] [ -Ldirectory ] [ -Mdirec- tory ] [ -Nsrc_arg ] [ -O[opt_lvl] ] [ -P ] [ -S ] [ -SSL2 ] [ Executing: mpifrt -show stdout: frt -Kident_mpi -f2004 -I/opt/FJSVxtclanga/.common/MECA024/include/mpi/fujitsu -I/opt/FJSVxtclanga/.common/MECA024/lib64 -Knointentopt -L/opt/FJSVxtclanga/.common/MECA024/lib64 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lfjstring_internal Trying FC compiler flag -PIC for PIC code Executing: mpifrt -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -PIC /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.F90 Successful compile: Source: program main end Output from compiling with -PIC Added FC compiler flag -PIC ===== Checking linker Executing: mpifrt -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -PIC /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.F90 Successful compile: Source: function foo(a) real:: a,x,bar common /xx/ x x=a foo = bar(x) end Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/libconftest.so -shared -fPIC /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 1 stderr: /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o: file not recognized: File format not recognized Rejected FC compiler flag -PIC because shared linker cannot handle it Trying FC compiler flag -fPIC for PIC code Executing: mpifrt -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -fPIC /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.F90 Successful compile: Source: program main end Output from compiling with -fPIC Added FC compiler flag -fPIC ===== Checking linker Executing: mpifrt -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -fPIC /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.F90 Successful compile: Source: function foo(a) real:: a,x,bar common /xx/ x x=a foo = bar(x) end Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/libconftest.so -shared -fPIC /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o Accepted FC compiler flag -fPIC for PIC code ============================================================================================= TESTING: checkSharedLinkerPaths from config.setCompilers(config/BuildSystem/config/setCompilers.py:1722) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Executing: uname -s stdout: Linux Executing: mpifcc -V Trying C linker flag -Wl,-rpath, Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -fPIC /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest -Wl,-rpath,/vol0004/ra010009/a04199/petsc -fPIC /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o Valid C linker flag -Wl,-rpath,/vol0004/ra010009/a04199/petsc Executing: uname -s stdout: Linux Executing: mpifcc -V Trying Cxx linker flag -Wl,-rpath, Executing: mpiFCC -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -fPIC /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpiFCC -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest -Wl,-rpath,/vol0004/ra010009/a04199/petsc /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-rpath,/vol0004/ra010009/a04199/petsc Executing: uname -s stdout: Linux Executing: mpifcc -V Trying FC linker flag -Wl,-rpath, Executing: mpifrt -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -fPIC /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: mpifrt -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest -Wl,-rpath,/vol0004/ra010009/a04199/petsc -fPIC /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o Valid FC linker flag -Wl,-rpath,/vol0004/ra010009/a04199/petsc ============================================================================================= TESTING: checkLibC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1761) Test whether we need to explicitly include libc in shared linking - Mac OSX requires an explicit reference to libc for shared linking ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -fPIC /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {void *chunk = malloc(31); free(chunk); return 0;} Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/libconftest.so -shared -fPIC /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o Shared linking does not require an explicit libc reference ============================================================================================= TESTING: checkDynamicLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1807) Check that the linker can dynamicaly load shared libraries Checking for header: dlfcn.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_DLFCN_H" to "1" Checking for functions [dlopen dlsym dlclose] in library ['dl'] [] ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -fPIC /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } char dlsym(); static void _check_dlsym() { dlsym(); } char dlclose(); static void _check_dlclose() { dlclose(); } int main() { _check_dlopen(); _check_dlsym(); _check_dlclose();; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest -fPIC /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -ldl Defined "HAVE_LIBDL" to "1" Adding ['dl'] to LIBS Executing: uname -s stdout: Linux Checking dynamic linker mpifcc using flags ['-shared'] Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/mpifcc...found Defined make macro "DYNAMICLINKER" to "mpifcc" Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -fPIC /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest -shared -fPIC /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -ldl Valid C linker flag -shared ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -fPIC /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("test");return 0;} Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/libconftest.so -shared -fPIC /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -ldl ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -fPIC /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { void *handle = dlopen("/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/libconftest.so", 0); int (*foo)(void) = (int (*)(void)) dlsym(handle, "foo"); if (!foo) { printf("Could not load symbol\n"); return -1; } if ((*foo)()) { printf("Invalid return from foo()\n"); return -1; } if (dlclose(handle)) { printf("Could not close library\n"); return -1; } ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest -fPIC /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -ldl Using dynamic linker mpifcc with flags ['-shared'] and library extension so ============================================================================================= TESTING: output from config.setCompilers(config/BuildSystem/config/setCompilers.py:1856) Output module data as defines and substitutions Substituting "CC" with "mpifcc" Substituting "CFLAGS" with " -fPIC" Defined make macro "CC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "CPP" with "mpifcc -E" Substituting "CPPFLAGS" with "" Substituting "CXX" with "mpiFCC" Substituting "CXX_CXXFLAGS" with " -fPIC" Substituting "CXXFLAGS" with "" Substituting "CXX_LINKER_SLFLAG" with "-Wl,-rpath," Substituting "CXXPP" with "mpiFCC -E" Substituting "CXXPPFLAGS" with "" Substituting "FC" with "mpifrt" Substituting "FFLAGS" with " -fPIC" Defined make macro "FC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "LDFLAGS" with "" Substituting "LIBS" with "-ldl " Substituting "SHARED_LIBRARY_FLAG" with "-shared" child config.setCompilers 11.147523 ============================================================================================= TESTING: configureIndexSize from PETSc.options.indexTypes(config/PETSc/options/indexTypes.py:39) Defined make macro "PETSC_INDEX_SIZE" to "32" child PETSc.options.indexTypes 0.003077 ============================================================================================= TESTING: configureCompilerFlags from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:82) Get the default compiler flags Defined make macro "C_VERSION" to "fcc (FCC) 4.5.0 20210304" Defined make macro "MPICC_SHOW" to "Unavailable" Trying C compiler flag -Kfast,openmp Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -Kfast,openmp Added C compiler flag -Kfast,openmp Defined make macro "Cxx_VERSION" to "FCC (FCC) 4.5.0 20210304" Defined make macro "MPICXX_SHOW" to "Unavailable" Trying Cxx compiler flag -Kfast,openmp Executing: mpiFCC -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -Kfast,openmp -fPIC /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Kfast,openmp Added Cxx compiler flag -Kfast,openmp Defined make macro "FC_VERSION" to "frt (FRT) 4.5.0 20210226" Defined make macro "MPIFC_SHOW" to "Unavailable" Defined make macro "MPIFC_SHOW" to "Unavailable" Trying FC compiler flag -O Executing: mpifrt -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -fPIC -O /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.F90 Successful compile: Source: program main end Output from compiling with -fPIC -O Added FC compiler flag -O ============================================================================================= TESTING: checkIntelHardwareSupport from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:173) Use Linux/MacOS commands to determine what operations the hardware supports Executing: lscpu stdout: Architecture: aarch64 Byte Order: Little Endian CPU(s): 60 On-line CPU(s) list: 0,1,12-59 Off-line CPU(s) list: 2-11 Thread(s) per core: 1 Core(s) per socket: 8 Socket(s): 6 NUMA node(s): 8 Vendor ID: 0x46 Model: 0 Stepping: 0x1 CPU max MHz: 2200.0000 CPU min MHz: 1600.0000 BogoMIPS: 200.00 NUMA node0 CPU(s): 0 NUMA node1 CPU(s): 1 NUMA node2 CPU(s): NUMA node3 CPU(s): NUMA node4 CPU(s): 12-23 NUMA node5 CPU(s): 24-35 NUMA node6 CPU(s): 36-47 NUMA node7 CPU(s): 48-59 Flags: fp asimd evtstrm aes pmull sha1 sha2 crc32 atomics fphp asimdhp cpuid asimdrdm fcma dcpop sve ============================================================================================= TESTING: checkCompilerMacros from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:164) Save the list of CPP macros defined by the C and C++ compiler, does not work for all compilers Executing: mpifcc -c -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags/conftest.c -E -dM stdout: #define __CHAR_BIT__ 8 #define __PRAGMA_REDEFINE_EXTNAME 1 #define __STDC__ 1 #define __STDC_VERSION__ 201112L #define __STDC_NO_ATOMICS__ 1 #define __STDC_UTF_16__ 1 #define __STDC_UTF_32__ 1 #define __STDC_HOSTED__ 1 #define __EDG__ 1 #define __EDG_VERSION__ 500 #define __EDG_SIZE_TYPE__ unsigned long #define __EDG_PTRDIFF_TYPE__ long #define __GNUC_STDC_INLINE__ 1 #define __GNUC__ 6 #define __GNUC_MINOR__ 1 #define __GNUC_PATCHLEVEL__ 0 #define __VERSION__ "EDG gcc 6.1 mode" #define __CHAR16_TYPE__ unsigned short #define __CHAR32_TYPE__ unsigned int #define __ATOMIC_RELAXED 0 #define __ATOMIC_CONSUME 1 #define __ATOMIC_ACQUIRE 2 #define __ATOMIC_RELEASE 3 #define __ATOMIC_ACQ_REL 4 #define __ATOMIC_SEQ_CST 5 #define __GCC_ATOMIC_BOOL_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR16_T_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR32_T_LOCK_FREE 2 #define __GCC_ATOMIC_WCHAR_T_LOCK_FREE 2 #define __GCC_ATOMIC_SHORT_LOCK_FREE 2 #define __GCC_ATOMIC_INT_LOCK_FREE 2 #define __GCC_ATOMIC_LONG_LOCK_FREE 2 #define __GCC_ATOMIC_LLONG_LOCK_FREE 2 #define __GCC_ATOMIC_POINTER_LOCK_FREE 2 #define __STDC_NO_THREADS__ 1 #define __unix__ 1 #define __PTRDIFF_TYPE__ long int #define __SIZE_TYPE__ long unsigned int #define __WCHAR_TYPE__ int #define __linux__ 1 #define unix 1 #define linux 1 #define __FUJITSU 1 #define __FCC_major__ 4 #define __FCC_minor__ 5 #define __FCC_patchlevel__ 0 #define __FCC_version__ "4.5.0" #define __aarch64__ 1 #define __unix 1 #define _OPENMP 201107 #define __fcc_version__ 0x800 #define __fcc_version 800 #define __USER_LABEL_PREFIX__ #define __OPTIMIZE__ 1 #define __ARM_ARCH 8 #define __ARM_FEATURE_SVE 1 #define __FP_FAST_FMA 1 #define __ELF__ 1 #define __linux 1 #define __LIBC_6B 1 #define __LP64__ 1 #define _LP64 1 #define __PIC__ 2 #define __pic__ 2 #define _REENTRANT 1 #define __MT__ 1 #define __uint128_t long double #define __builtin_assume_aligned(address,align) (address) Executing: mpiFCC -c -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -Kfast,openmp -fPIC /home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags/conftest.cc -E -dM stdout: #define __CHAR_BIT__ 8 #define __PRAGMA_REDEFINE_EXTNAME 1 #define __STDC__ 1 #define __STDC_HOSTED__ 1 #define __cplusplus 201402L #define _WCHAR_T 1 #define __CHAR16_T_AND_CHAR32_T 1 #define _BOOL 1 #define __ARRAY_OPERATORS 1 #define __EXCEPTIONS 1 #define __RTTI 1 #define __PLACEMENT_DELETE 1 #define __FJ_RUNTIME_USES_NAMESPACES 1 #define __EDG_IA64_ABI 1 #define __cpp_hex_float 201603L #define __cpp_initializer_lists 200806L #define __cpp_sized_deallocation 201309L #define __cpp_unicode_characters 200704L #define __cpp_aggregate_nsdmi 201304L #define __cpp_alias_templates 200704L #define __cpp_attributes 200809L #define __cpp_binary_literals 201304L #define __cpp_decltype 200707L #define __cpp_decltype_auto 201304L #define __cpp_delegating_constructors 200604L #define __cpp_exceptions 199711L #define __cpp_generic_lambdas 201304L #define __cpp_inheriting_constructors 200802L #define __cpp_init_captures 201304L #define __cpp_lambdas 200907L #define __cpp_nsdmi 200809L #define __cpp_raw_strings 200710L #define __cpp_ref_qualifiers 200710L #define __cpp_return_type_deduction 201304L #define __cpp_rtti 199711L #define __cpp_rvalue_references 200610L #define __cpp_threadsafe_static_init 200806L #define __cpp_unicode_literals 200710L #define __cpp_user_defined_literals 200809L #define __cpp_variable_templates 201304L #define __cpp_variadic_templates 200704L #define __cpp_enumerator_attributes 201411L #define __cpp_constexpr 201304L #define __cpp_range_based_for 200907L #define __cpp_static_assert 201411L #define __EDG_TYPE_TRAITS_ENABLED 1 #define __VARIADIC_TEMPLATES 1 #define __STDCPP_THREADS__ 1 #define __EDG_CONSTEXPR_ENABLED__ 1 #define __EDG__ 1 #define __EDG_VERSION__ 500 #define __EDG_SIZE_TYPE__ unsigned long #define __EDG_PTRDIFF_TYPE__ long #define __GNUG__ 6 #define __GXX_RTTI 1 #define __GNUC_STDC_INLINE__ 1 #define __GNUC__ 6 #define __GNUC_MINOR__ 1 #define __GNUC_PATCHLEVEL__ 0 #define __VERSION__ "EDG g++ 6.1 mode" #define __CHAR16_TYPE__ unsigned short #define __CHAR32_TYPE__ unsigned int #define __ATOMIC_RELAXED 0 #define __ATOMIC_CONSUME 1 #define __ATOMIC_ACQUIRE 2 #define __ATOMIC_RELEASE 3 #define __ATOMIC_ACQ_REL 4 #define __ATOMIC_SEQ_CST 5 #define __GCC_ATOMIC_BOOL_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR16_T_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR32_T_LOCK_FREE 2 #define __GCC_ATOMIC_WCHAR_T_LOCK_FREE 2 #define __GCC_ATOMIC_SHORT_LOCK_FREE 2 #define __GCC_ATOMIC_INT_LOCK_FREE 2 #define __GCC_ATOMIC_LONG_LOCK_FREE 2 #define __GCC_ATOMIC_LLONG_LOCK_FREE 2 #define __GCC_ATOMIC_POINTER_LOCK_FREE 2 #define __unix__ 1 #define __PTRDIFF_TYPE__ long int #define __SIZE_TYPE__ long unsigned int #define __WCHAR_TYPE__ int #define __linux__ 1 #define _GNU_SOURCE 1 #define unix 1 #define linux 1 #define __FUJITSU 1 #define __FCC_major__ 4 #define __FCC_minor__ 5 #define __FCC_patchlevel__ 0 #define __FCC_version__ "4.5.0" #define __aarch64__ 1 #define __unix 1 #define _OPENMP 201107 #define __FCC_VERSION 800 #define __USER_LABEL_PREFIX__ #define __OPTIMIZE__ 1 #define __ARM_ARCH 8 #define __ARM_FEATURE_SVE 1 #define __FP_FAST_FMA 1 #define __ELF__ 1 #define __linux 1 #define __LIBC_6B 1 #define _LP64 1 #define __LP64__ 1 #define __PIC__ 2 #define __pic__ 2 #define _REENTRANT 1 #define __MT__ 1 #define __uint128_t long double #define __builtin_assume_aligned(address,align) (address) child config.compilerFlags 1.054635 Executing: mpifcc --help | head -n 20 stdout: USAGE fccpx [ -Nnoclang ] [ option ... ] filename ... fcc [ -Nnoclang ] [ option ... ] filename ... OPTIONS General compiler options [ -# ] [ -### ] [ -A- ] [ -Aname[(tokens)] ] [ -B{dynamic|static} ] [ -C ] [ -Dname[=tokens] ] [ -E ] [ -H ] [ -Idir ] [ -Ldir ] [ -M ] [ -MD ] [ -MF filename ] [ -MM ] [ -MMD ] [ -MP ] [ -MT target ] [ -Nopt ] [ -P ] [ -Qc ] [ -S ] [ -SSL2 ] [ -SSL2BLAMP ] [ -Uname ] [ -Wtool,arg1[,arg2]... ] [ -Yitem,dir ] [ -c ] [ {-g|-g0} ] [ -lname ] [ -mt ] [ -o pathname ] [ -shared ] Message options [ -V ] [ {-help|--help} ] [ -j ] [ -w ] Optimization options ============================================================================================= TESTING: checkC99Flag from config.compilers(config/BuildSystem/config/compilers.py:1429) Check for -std=c99 or equivalent flag Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.c", line 7: warning: variable "x" was set but never used float x[2],y; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { float x[2],y; y = FLT_ROUNDS; // c++ comment int j = 2; for (int i=0; i<2; i++){ x[i] = i*j*y; } ; return 0; } Output from compiling with -fPIC -Kfast,openmp "/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.c", line 7: warning: variable "x" was set but never used float x[2],y; ^ Accepted C99 compile flag: ============================================================================================= TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:158) Check for the C/CXX restrict keyword Executing: mpifcc -V ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.c Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.c", line 5: warning: variable "x" was declared but never referenced float * __restrict x;; ^ Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set C restrict keyword to __restrict Defined "C_RESTRICT" to "__restrict" ============================================================================================= TESTING: checkCFormatting from config.compilers(config/BuildSystem/config/compilers.py:413) Activate format string checking if using the GNU compilers ============================================================================================= TESTING: checkCInline from config.compilers(config/BuildSystem/config/compilers.py:128) Check for C inline keyword ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set C Inline keyword to inline Defined "C_INLINE" to "inline" ============================================================================================= TESTING: checkDynamicLoadFlag from config.compilers(config/BuildSystem/config/compilers.py:424) Checks that dlopen() takes RTLD_XXX, and defines PETSC_HAVE_RTLD_XXX if it does ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LAZY);dlopen(libname, RTLD_NOW);dlopen(libname, RTLD_LOCAL);dlopen(libname, RTLD_GLOBAL); ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_LAZY" to "1" Defined "HAVE_RTLD_NOW" to "1" Defined "HAVE_RTLD_LOCAL" to "1" Defined "HAVE_RTLD_GLOBAL" to "1" ============================================================================================= TESTING: checkCLibraries from config.compilers(config/BuildSystem/config/compilers.py:222) Determines the libraries needed to link with C compiled code ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void asub(void) {char s[16];printf("testing %s",s);} ===== Checking linker Executing: mpifrt -c -o /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -fPIC -O /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.F90 Successful compile: Source: program main print*,'testing' stop end Executing: mpifrt -o /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest -fPIC -O /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.o /home/ra010009/a04199/petsc-rz04nngc/config.compilers/confc.o -ldl C libraries are not needed when using Fortran linker ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void asub(void) {char s[16];printf("testing %s",s);} ===== Checking linker Executing: mpiFCC -c -o /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -Kfast,openmp -fPIC /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.cc Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.cc", line 5: warning: last line of file ends without a newline ^ Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Executing: mpiFCC -o /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.o /home/ra010009/a04199/petsc-rz04nngc/config.compilers/confc.o -ldl C libraries are not needed when using C++ linker ============================================================================================= TESTING: checkDependencyGenerationFlag from config.compilers(config/BuildSystem/config/compilers.py:1380) Check if -MMD works for dependency generation, and add it if it does Trying C compiler flag -MMD -MP Rejected C compiler flag -MMD -MP because no dependency file (/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.d) was generated Trying C compiler flag -MMD Rejected C compiler flag -MMD because no dependency file (/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.d) was generated Trying C compiler flag -xMMD Rejected C compiler flag -xMMD because no dependency file (/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.d) was generated Trying C compiler flag -qmakedep=gcc Rejected C compiler flag -qmakedep=gcc Trying C compiler flag -MD Rejected C compiler flag -MD because no dependency file (/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.d) was generated Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -fPIC -Kfast,openmp -MMD -MP /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -Kfast,openmp -MMD -MP Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -fPIC -Kfast,openmp -MMD /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -Kfast,openmp -MMD Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -fPIC -Kfast,openmp -xMMD /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -Kfast,openmp -xMMD Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -fPIC -Kfast,openmp -qmakedep=gcc /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: fcc: warning: -qmakedep=gcc is unrecognized option. Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -Kfast,openmp -qmakedep=gcc fcc: warning: -qmakedep=gcc is unrecognized option. Rejecting compiler flag -qmakedep=gcc due to fcc: warning: -qmakedep=gcc is unrecognized option. Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -fPIC -Kfast,openmp -MD /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -Kfast,openmp -MD Trying Cxx compiler flag -MMD -MP Rejected Cxx compiler flag -MMD -MP because no dependency file (/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.d) was generated Trying Cxx compiler flag -MMD Rejected Cxx compiler flag -MMD because no dependency file (/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.d) was generated Trying Cxx compiler flag -xMMD Rejected Cxx compiler flag -xMMD because no dependency file (/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.d) was generated Trying Cxx compiler flag -qmakedep=gcc Rejected Cxx compiler flag -qmakedep=gcc Trying Cxx compiler flag -MD Rejected Cxx compiler flag -MD because no dependency file (/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.d) was generated Executing: mpiFCC -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -Kfast,openmp -fPIC -MMD -MP /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -MMD -MP Executing: mpiFCC -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -Kfast,openmp -fPIC -MMD /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -MMD Executing: mpiFCC -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -Kfast,openmp -fPIC -xMMD /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -xMMD Executing: mpiFCC -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -Kfast,openmp -fPIC -qmakedep=gcc /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.cc Possible ERROR while running compiler: stderr: FCC: warning: -qmakedep=gcc is unrecognized option. Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -qmakedep=gcc FCC: warning: -qmakedep=gcc is unrecognized option. Rejecting compiler flag -qmakedep=gcc due to FCC: warning: -qmakedep=gcc is unrecognized option. Executing: mpiFCC -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -Kfast,openmp -fPIC -MD /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -MD Executing: mpiFCC --help | head -n 20 stdout: USAGE FCCpx [ -Nnoclang ] [ option ... ] filename ... FCC [ -Nnoclang ] [ option ... ] filename ... OPTIONS General compiler options [ -# ] [ -### ] [ -A- ] [ -Aname[(tokens)] ] [ -B{dynamic|static} ] [ -C ] [ -Dname[=tokens] ] [ -E ] [ -H ] [ -Idir ] [ -Ldir ] [ -M ] [ -MD ] [ -MF filename ] [ -MM ] [ -MMD ] [ -MP ] [ -MT target ] [ -Nopt ] [ -P ] [ -Qc ] [ -S ] [ -SSL2 ] [ -SSL2BLAMP ] [ -Uname ] [ -Wtool,arg1[,arg2]... ] [ -Yitem,dir ] [ -c ] [ {-g|-g0} ] [ -lname ] [ -mt ] [ -o pathname ] [ -shared ] Message options [ -V ] [ {-help|--help} ] [ -j ] [ -w ] [{--brief_diagnos- tics|--no_brief_diagnostics}] [ --diag_error tag[,tag]... ] [ --diag_suppress tag[,tag]... ] [ --display_error_number ] [ ============================================================================================= TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:158) Check for the C/CXX restrict keyword Executing: mpifcc -V ===== Checking compiler Executing: mpiFCC -c -o /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -Kfast,openmp -fPIC /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.cc Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.cc", line 5: warning: variable "x" was declared but never referenced float * __restrict x;; ^ Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set Cxx restrict keyword to __restrict Defined "CXX_RESTRICT" to "__restrict" ============================================================================================= TESTING: checkCxxDialect from config.compilers(config/BuildSystem/config/compilers.py:471) Determine the CXX dialect supported by the compiler(language) [and correspoding compiler option - if any]. isGNU indicates if the compiler is g++. -with--dialect can take options: auto: use highest dialect configure can determine cxx17: [future?] cxx14: gnu++14 or c++14 cxx11: gnu++11 or c++11 0: disable CxxDialect check and use compiler default checkCxxDialect: checking CXX14 for Cxx with flag: Defined "HAVE_CXX_DIALECT_CXX14" to "1" Defined "HAVE_CXX_DIALECT_CXX11" to "1" Executing: mpiFCC -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -Kfast,openmp -fPIC /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.cc Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.cc", line 22: warning: statement is unreachable return 0; ^ Source: #include "confdefs.h" #include "conffix.h" #include #include #include template constexpr T Cubed( T x ) { return x*x*x; } int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); std::cout << x; constexpr std::complex I(0.0,1.0); auto lambda = [](auto x, auto y) {return x + y;}; return lambda(3,4) + (int)std::real(I); ; return 0; } Output from compiling with -Kfast,openmp "/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.cc", line 22: warning: statement is unreachable return 0; ^ ============================================================================================= TESTING: checkCxxOptionalExtensions from config.compilers(config/BuildSystem/config/compilers.py:443) Check whether the C++ compiler (IBM xlC, OSF5) need special flag for .c files which contain C++ Executing: mpiFCC -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -Kfast,openmp -fPIC /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Output from compiling with -Kfast,openmp ============================================================================================= TESTING: checkCxxInline from config.compilers(config/BuildSystem/config/compilers.py:143) Check for C++ inline keyword ===== Checking compiler Executing: mpiFCC -c -o /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -Kfast,openmp -fPIC /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set Cxx Inline keyword to inline Defined "CXX_INLINE" to "inline" ============================================================================================= TESTING: checkCxxLibraries from config.compilers(config/BuildSystem/config/compilers.py:566) Determines the libraries needed to link with C++ from C and Fortran ===== Checking compiler Executing: mpiFCC -c -o /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -Kfast,openmp -fPIC /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.c Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.c", line 5: warning: last line of file ends without a newline ^ Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.o /home/ra010009/a04199/petsc-rz04nngc/config.compilers/confc.o -ldl Possible ERROR while running linker: exit code 1 stderr: /home/ra010009/a04199/petsc-rz04nngc/config.compilers/confc.o: In function `asub()': /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.cc:7: undefined reference to `__cxa_allocate_exception' /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.cc:7: undefined reference to `typeinfo for int' /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.cc:7: undefined reference to `typeinfo for int' /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.cc:7: undefined reference to `__cxa_throw' /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.cc:7: undefined reference to `__cxa_get_exception_ptr' /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.cc:7: undefined reference to `__cxa_begin_catch' /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.cc:7: undefined reference to `std::__1::cout' /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.cc:7: undefined reference to `std::__1::cout' /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.cc:7: undefined reference to `__cxa_end_catch' /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.cc:7: undefined reference to `__cxa_end_catch' /home/ra010009/a04199/petsc-rz04nngc/config.compilers/confc.o: In function `std::__1::basic_string, std::__1::allocator >::basic_string(unsigned long, char)': /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/string:2164: undefined reference to `std::__1::basic_string, std::__1::allocator >::__init(unsigned long, char)' /home/ra010009/a04199/petsc-rz04nngc/config.compilers/confc.o: In function `std::__1::ostreambuf_iterator > std::__1::__pad_and_output >(std::__1::ostreambuf_iterator >, char const*, char const*, char const*, std::__1::ios_base&, char)': /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/locale:1510: undefined reference to `std::__1::basic_string, std::__1::allocator >::~basic_string()' /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/locale:1510: undefined reference to `std::__1::basic_string, std::__1::allocator >::~basic_string()' /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/locale:1512: undefined reference to `std::__1::basic_string, std::__1::allocator >::~basic_string()' /home/ra010009/a04199/petsc-rz04nngc/config.compilers/confc.o: In function `std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long)': /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/ostream:751: undefined reference to `std::__1::basic_ostream >::sentry::sentry(std::__1::basic_ostream >&)' /home/ra010009/a04199/petsc-rz04nngc/config.compilers/confc.o: In function `std::__1::basic_ios >::widen(char) const': /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/ios:734: undefined reference to `std::__1::ios_base::getloc() const' /home/ra010009/a04199/petsc-rz04nngc/config.compilers/confc.o: In function `std::__1::ctype const& std::__1::use_facet >(std::__1::locale const&)': /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/__locale:186: undefined reference to `std::__1::ctype::id' /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/__locale:186: undefined reference to `std::__1::ctype::id' /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/__locale:186: undefined reference to `std::__1::locale::use_facet(std::__1::locale::id&) const' /home/ra010009/a04199/petsc-rz04nngc/config.compilers/confc.o: In function `std::__1::basic_ios >::widen(char) const': /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/ios:734: undefined reference to `std::__1::locale::~locale()' /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/ios:734: undefined reference to `std::__1::locale::~locale()' /home/ra010009/a04199/petsc-rz04nngc/config.compilers/confc.o: In function `std::__1::ios_base::setstate(unsigned int)': /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/ios:524: undefined reference to `std::__1::ios_base::clear(unsigned int)' /home/ra010009/a04199/petsc-rz04nngc/config.compilers/confc.o: In function `std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long)': /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/ostream:764: undefined reference to `std::__1::basic_ostream >::sentry::~sentry()' /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/ostream:764: undefined reference to `__cxa_begin_catch' /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/ostream:769: undefined reference to `std::__1::ios_base::__set_badbit_and_consider_rethrow()' /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/ostream:769: undefined reference to `__cxa_end_catch' /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/ostream:770: undefined reference to `__cxa_end_catch' /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/ostream:766: undefined reference to `std::__1::basic_ostream >::sentry::~sentry()' /home/ra010009/a04199/petsc-rz04nngc/config.compilers/confc.o: In function `std::__1::__deallocate(void*)': /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/new:174: undefined reference to `operator delete(void*)' /home/ra010009/a04199/petsc-rz04nngc/config.compilers/confc.o:(.data.DW.ref.__gxx_personality_v0[DW.ref.__gxx_personality_v0]+0x0): undefined reference to `__gxx_personality_v0' /home/ra010009/a04199/petsc-rz04nngc/config.compilers/confc.o:(.data.DW.ref._ZTIi[DW.ref._ZTIi]+0x0): undefined reference to `typeinfo for int' Executing: uname -s stdout: Linux ===== Checking compiler Executing: mpiFCC -c -o /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -Kfast,openmp -fPIC /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.c Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.c", line 5: warning: last line of file ends without a newline ^ Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.o /home/ra010009/a04199/petsc-rz04nngc/config.compilers/confc.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /home/ra010009/a04199/petsc-rz04nngc/config.compilers/confc.o: In function `asub()': /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.cc:7: undefined reference to `std::__1::cout' /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.cc:7: undefined reference to `std::__1::cout' /home/ra010009/a04199/petsc-rz04nngc/config.compilers/confc.o: In function `std::__1::basic_string, std::__1::allocator >::basic_string(unsigned long, char)': /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/string:2164: undefined reference to `std::__1::basic_string, std::__1::allocator >::__init(unsigned long, char)' /home/ra010009/a04199/petsc-rz04nngc/config.compilers/confc.o: In function `std::__1::ostreambuf_iterator > std::__1::__pad_and_output >(std::__1::ostreambuf_iterator >, char const*, char const*, char const*, std::__1::ios_base&, char)': /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/locale:1510: undefined reference to `std::__1::basic_string, std::__1::allocator >::~basic_string()' /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/locale:1510: undefined reference to `std::__1::basic_string, std::__1::allocator >::~basic_string()' /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/locale:1512: undefined reference to `std::__1::basic_string, std::__1::allocator >::~basic_string()' /home/ra010009/a04199/petsc-rz04nngc/config.compilers/confc.o: In function `std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long)': /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/ostream:751: undefined reference to `std::__1::basic_ostream >::sentry::sentry(std::__1::basic_ostream >&)' /home/ra010009/a04199/petsc-rz04nngc/config.compilers/confc.o: In function `std::__1::basic_ios >::widen(char) const': /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/ios:734: undefined reference to `std::__1::ios_base::getloc() const' /home/ra010009/a04199/petsc-rz04nngc/config.compilers/confc.o: In function `std::__1::ctype const& std::__1::use_facet >(std::__1::locale const&)': /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/__locale:186: undefined reference to `std::__1::ctype::id' /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/__locale:186: undefined reference to `std::__1::ctype::id' /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/__locale:186: undefined reference to `std::__1::locale::use_facet(std::__1::locale::id&) const' /home/ra010009/a04199/petsc-rz04nngc/config.compilers/confc.o: In function `std::__1::basic_ios >::widen(char) const': /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/ios:734: undefined reference to `std::__1::locale::~locale()' /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/ios:734: undefined reference to `std::__1::locale::~locale()' /home/ra010009/a04199/petsc-rz04nngc/config.compilers/confc.o: In function `std::__1::ios_base::setstate(unsigned int)': /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/ios:524: undefined reference to `std::__1::ios_base::clear(unsigned int)' /home/ra010009/a04199/petsc-rz04nngc/config.compilers/confc.o: In function `std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long)': /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/ostream:764: undefined reference to `std::__1::basic_ostream >::sentry::~sentry()' /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/ostream:769: undefined reference to `std::__1::ios_base::__set_badbit_and_consider_rethrow()' /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/ostream:766: undefined reference to `std::__1::basic_ostream >::sentry::~sentry()' C++ code cannot directly be linked with C linker using -lstdc++, therefore will determine needed C++ libraries ===== Checking compiler Executing: mpiFCC -c -o /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -Kfast,openmp -fPIC /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} ===== Checking linker Executing: mpifrt -c -o /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -fPIC -O /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.F90 Successful compile: Source: program main print*,'testing' stop end Executing: mpifrt -o /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest -fPIC -O /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.o /home/ra010009/a04199/petsc-rz04nngc/config.compilers/confc.o -ldl Possible ERROR while running linker: exit code 1 stderr: /home/ra010009/a04199/petsc-rz04nngc/config.compilers/confc.o: In function `asub()': /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.cc:7: undefined reference to `__cxa_allocate_exception' /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.cc:7: undefined reference to `typeinfo for int' /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.cc:7: undefined reference to `typeinfo for int' /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.cc:7: undefined reference to `__cxa_throw' /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.cc:7: undefined reference to `__cxa_get_exception_ptr' /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.cc:7: undefined reference to `__cxa_begin_catch' /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.cc:7: undefined reference to `std::__1::cout' /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.cc:7: undefined reference to `std::__1::cout' /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.cc:7: undefined reference to `__cxa_end_catch' /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.cc:7: undefined reference to `__cxa_end_catch' /home/ra010009/a04199/petsc-rz04nngc/config.compilers/confc.o: In function `std::__1::basic_string, std::__1::allocator >::basic_string(unsigned long, char)': /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/string:2164: undefined reference to `std::__1::basic_string, std::__1::allocator >::__init(unsigned long, char)' /home/ra010009/a04199/petsc-rz04nngc/config.compilers/confc.o: In function `std::__1::ostreambuf_iterator > std::__1::__pad_and_output >(std::__1::ostreambuf_iterator >, char const*, char const*, char const*, std::__1::ios_base&, char)': /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/locale:1510: undefined reference to `std::__1::basic_string, std::__1::allocator >::~basic_string()' /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/locale:1510: undefined reference to `std::__1::basic_string, std::__1::allocator >::~basic_string()' /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/locale:1512: undefined reference to `std::__1::basic_string, std::__1::allocator >::~basic_string()' /home/ra010009/a04199/petsc-rz04nngc/config.compilers/confc.o: In function `std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long)': /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/ostream:751: undefined reference to `std::__1::basic_ostream >::sentry::sentry(std::__1::basic_ostream >&)' /home/ra010009/a04199/petsc-rz04nngc/config.compilers/confc.o: In function `std::__1::basic_ios >::widen(char) const': /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/ios:734: undefined reference to `std::__1::ios_base::getloc() const' /home/ra010009/a04199/petsc-rz04nngc/config.compilers/confc.o: In function `std::__1::ctype const& std::__1::use_facet >(std::__1::locale const&)': /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/__locale:186: undefined reference to `std::__1::ctype::id' /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/__locale:186: undefined reference to `std::__1::ctype::id' /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/__locale:186: undefined reference to `std::__1::locale::use_facet(std::__1::locale::id&) const' /home/ra010009/a04199/petsc-rz04nngc/config.compilers/confc.o: In function `std::__1::basic_ios >::widen(char) const': /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/ios:734: undefined reference to `std::__1::locale::~locale()' /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/ios:734: undefined reference to `std::__1::locale::~locale()' /home/ra010009/a04199/petsc-rz04nngc/config.compilers/confc.o: In function `std::__1::ios_base::setstate(unsigned int)': /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/ios:524: undefined reference to `std::__1::ios_base::clear(unsigned int)' /home/ra010009/a04199/petsc-rz04nngc/config.compilers/confc.o: In function `std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long)': /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/ostream:764: undefined reference to `std::__1::basic_ostream >::sentry::~sentry()' /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/ostream:764: undefined reference to `__cxa_begin_catch' /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/ostream:769: undefined reference to `std::__1::ios_base::__set_badbit_and_consider_rethrow()' /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/ostream:769: undefined reference to `__cxa_end_catch' /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/ostream:770: undefined reference to `__cxa_end_catch' /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/ostream:766: undefined reference to `std::__1::basic_ostream >::sentry::~sentry()' /home/ra010009/a04199/petsc-rz04nngc/config.compilers/confc.o: In function `std::__1::__deallocate(void*)': /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/new:174: undefined reference to `operator delete(void*)' /home/ra010009/a04199/petsc-rz04nngc/config.compilers/confc.o:(.data.DW.ref.__gxx_personality_v0[DW.ref.__gxx_personality_v0]+0x0): undefined reference to `__gxx_personality_v0' /home/ra010009/a04199/petsc-rz04nngc/config.compilers/confc.o:(.data.DW.ref._ZTIi[DW.ref._ZTIi]+0x0): undefined reference to `typeinfo for int' Executing: uname -s stdout: Linux ===== Checking compiler Executing: mpiFCC -c -o /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -Kfast,openmp -fPIC /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} ===== Checking linker Executing: mpifrt -c -o /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -fPIC -O /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.F90 Successful compile: Source: program main print*,'testing' stop end Executing: mpifrt -o /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest -fPIC -O /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.o /home/ra010009/a04199/petsc-rz04nngc/config.compilers/confc.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /home/ra010009/a04199/petsc-rz04nngc/config.compilers/confc.o: In function `asub()': /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.cc:7: undefined reference to `std::__1::cout' /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.cc:7: undefined reference to `std::__1::cout' /home/ra010009/a04199/petsc-rz04nngc/config.compilers/confc.o: In function `std::__1::basic_string, std::__1::allocator >::basic_string(unsigned long, char)': /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/string:2164: undefined reference to `std::__1::basic_string, std::__1::allocator >::__init(unsigned long, char)' /home/ra010009/a04199/petsc-rz04nngc/config.compilers/confc.o: In function `std::__1::ostreambuf_iterator > std::__1::__pad_and_output >(std::__1::ostreambuf_iterator >, char const*, char const*, char const*, std::__1::ios_base&, char)': /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/locale:1510: undefined reference to `std::__1::basic_string, std::__1::allocator >::~basic_string()' /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/locale:1510: undefined reference to `std::__1::basic_string, std::__1::allocator >::~basic_string()' /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/locale:1512: undefined reference to `std::__1::basic_string, std::__1::allocator >::~basic_string()' /home/ra010009/a04199/petsc-rz04nngc/config.compilers/confc.o: In function `std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long)': /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/ostream:751: undefined reference to `std::__1::basic_ostream >::sentry::sentry(std::__1::basic_ostream >&)' /home/ra010009/a04199/petsc-rz04nngc/config.compilers/confc.o: In function `std::__1::basic_ios >::widen(char) const': /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/ios:734: undefined reference to `std::__1::ios_base::getloc() const' /home/ra010009/a04199/petsc-rz04nngc/config.compilers/confc.o: In function `std::__1::ctype const& std::__1::use_facet >(std::__1::locale const&)': /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/__locale:186: undefined reference to `std::__1::ctype::id' /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/__locale:186: undefined reference to `std::__1::ctype::id' /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/__locale:186: undefined reference to `std::__1::locale::use_facet(std::__1::locale::id&) const' /home/ra010009/a04199/petsc-rz04nngc/config.compilers/confc.o: In function `std::__1::basic_ios >::widen(char) const': /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/ios:734: undefined reference to `std::__1::locale::~locale()' /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/ios:734: undefined reference to `std::__1::locale::~locale()' /home/ra010009/a04199/petsc-rz04nngc/config.compilers/confc.o: In function `std::__1::ios_base::setstate(unsigned int)': /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/ios:524: undefined reference to `std::__1::ios_base::clear(unsigned int)' /home/ra010009/a04199/petsc-rz04nngc/config.compilers/confc.o: In function `std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long)': /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/ostream:764: undefined reference to `std::__1::basic_ostream >::sentry::~sentry()' /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/ostream:769: undefined reference to `std::__1::ios_base::__set_badbit_and_consider_rethrow()' /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/ostream:766: undefined reference to `std::__1::basic_ostream >::sentry::~sentry()' C++ code cannot directly be linked with FC linker, therefore will determine needed C++ libraries Executing: mpiFCC -c -o /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -Kfast,openmp -fPIC /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpiFCC -o /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest -v -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.o -ldl stdout: GNU ld version 2.30-79.el8 /usr/bin/ld --build-id --eh-frame-hdr -m aarch64linux -dynamic-linker /lib/ld-linux-aarch64.so.1 /usr/lib64/crt1.o /usr/lib64/crti.o /usr/lib/gcc/aarch64-redhat-linux/8/crtbegin.o -lfjprofmpi -L/usr/lib/gcc/aarch64-redhat-linux/8 -o /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest -v /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.o -ldl -L/opt/FJSVxtclanga/.common/MECA024/lib64 -lmpi_cxx -lmpi -lfjstring_internal /opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64/fjcrt0.o /opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64/fjlang08.o /opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64/fjomp.o /opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64/fjfz.o /opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64/fjhpctag.o -L/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64 -lfjomphk -lfjomp -lfj90i -lfj90fmt_sve -lfj90f -lfjsrcinfo -lfjcrt -lfjompcrt -lfjprofcore -lfjprofomp -lfjc++ -lfjc++abi -lfjdemgl -lmpg -lm -latomic -lpthread -L/usr/lib64 -L/opt/FJSVxos/mmm/lib64 -L/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64/nofjobj -T/opt/FJSVxos/mmm/util/bss-2mb.lds -lm -lrt -lpthread -lelf -ldl -lgcc_s -lgcc -lc -lgcc_s -lgcc -lc /usr/lib/gcc/aarch64-redhat-linux/8/crtend.o /usr/lib64/crtn.o Possible ERROR while running linker: stdout: GNU ld version 2.30-79.el8 /usr/bin/ld --build-id --eh-frame-hdr -m aarch64linux -dynamic-linker /lib/ld-linux-aarch64.so.1 /usr/lib64/crt1.o /usr/lib64/crti.o /usr/lib/gcc/aarch64-redhat-linux/8/crtbegin.o -lfjprofmpi -L/usr/lib/gcc/aarch64-redhat-linux/8 -o /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest -v /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.o -ldl -L/opt/FJSVxtclanga/.common/MECA024/lib64 -lmpi_cxx -lmpi -lfjstring_internal /opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64/fjcrt0.o /opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64/fjlang08.o /opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64/fjomp.o /opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64/fjfz.o /opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64/fjhpctag.o -L/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64 -lfjomphk -lfjomp -lfj90i -lfj90fmt_sve -lfj90f -lfjsrcinfo -lfjcrt -lfjompcrt -lfjprofcore -lfjprofomp -lfjc++ -lfjc++abi -lfjdemgl -lmpg -lm -latomic -lpthread -L/usr/lib64 -L/opt/FJSVxos/mmm/lib64 -L/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64/nofjobj -T/opt/FJSVxos/mmm/util/bss-2mb.lds -lm -lrt -lpthread -lelf -ldl -lgcc_s -lgcc -lc -lgcc_s -lgcc -lc /usr/lib/gcc/aarch64-redhat-linux/8/crtend.o /usr/lib64/crtn.ostderr: FCC: Fujitsu C/C++ Compiler 4.5.0 tcsds-1.2.31 simulating gcc version 6.1 compilers: Checking arg GNU compilers: Unknown arg GNU compilers: Checking arg ld compilers: Unknown arg ld compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 2.30-79.el8 compilers: Unknown arg 2.30-79.el8 compilers: Checking arg /usr/bin/ld compilers: Unknown arg /usr/bin/ld compilers: Checking arg --build-id compilers: Unknown arg --build-id compilers: Checking arg --eh-frame-hdr compilers: Unknown arg --eh-frame-hdr compilers: Checking arg -m compilers: Unknown arg -m compilers: Checking arg aarch64linux compilers: Unknown arg aarch64linux compilers: Checking arg -dynamic-linker compilers: Unknown arg -dynamic-linker compilers: Checking arg /lib/ld-linux-aarch64.so.1 compilers: Unknown arg /lib/ld-linux-aarch64.so.1 compilers: Checking arg /usr/lib64/crt1.o compilers: Unknown arg /usr/lib64/crt1.o compilers: Checking arg /usr/lib64/crti.o compilers: Unknown arg /usr/lib64/crti.o compilers: Checking arg /usr/lib/gcc/aarch64-redhat-linux/8/crtbegin.o compilers: Unknown arg /usr/lib/gcc/aarch64-redhat-linux/8/crtbegin.o compilers: Checking arg -lfjprofmpi compilers: Found library: -lfjprofmpi compilers: Checking arg -L/usr/lib/gcc/aarch64-redhat-linux/8 compilers: Found library directory: -L/usr/lib/gcc/aarch64-redhat-linux/8 compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest compilers: Unknown arg /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.o compilers: Unknown arg /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.o compilers: Checking arg -ldl compilers: Found library: -ldl compilers: Checking arg -L/opt/FJSVxtclanga/.common/MECA024/lib64 compilers: Found library directory: -L/opt/FJSVxtclanga/.common/MECA024/lib64 compilers: Checking arg -lmpi_cxx compilers: Found library: -lmpi_cxx compilers: Checking arg -lmpi compilers: Found library: -lmpi compilers: Checking arg -lfjstring_internal compilers: Found library: -lfjstring_internal compilers: Checking arg /opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64/fjcrt0.o compilers: Unknown arg /opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64/fjcrt0.o compilers: Checking arg /opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64/fjlang08.o compilers: Unknown arg /opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64/fjlang08.o compilers: Checking arg /opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64/fjomp.o compilers: Unknown arg /opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64/fjomp.o compilers: Checking arg /opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64/fjfz.o compilers: Unknown arg /opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64/fjfz.o compilers: Checking arg /opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64/fjhpctag.o compilers: Unknown arg /opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64/fjhpctag.o compilers: Checking arg -L/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64 compilers: Found library directory: -L/opt/FJSVxtclanga/tcsds-1.2.31/lib64 compilers: Checking arg -lfjomphk compilers: Found library: -lfjomphk compilers: Checking arg -lfjomp compilers: Found library: -lfjomp compilers: Checking arg -lfj90i compilers: Found library: -lfj90i compilers: Checking arg -lfj90fmt_sve compilers: Found library: -lfj90fmt_sve compilers: Checking arg -lfj90f compilers: Found library: -lfj90f compilers: Checking arg -lfjsrcinfo compilers: Found library: -lfjsrcinfo compilers: Checking arg -lfjcrt compilers: Found library: -lfjcrt compilers: Checking arg -lfjompcrt compilers: Found library: -lfjompcrt compilers: Checking arg -lfjprofcore compilers: Found library: -lfjprofcore compilers: Checking arg -lfjprofomp compilers: Found library: -lfjprofomp compilers: Checking arg -lfjc++ compilers: Found library: -lfjc++ compilers: Checking arg -lfjc++abi compilers: Found library: -lfjc++abi compilers: Checking arg -lfjdemgl compilers: Found library: -lfjdemgl compilers: Checking arg -lmpg compilers: Found library: -lmpg compilers: Checking arg -lm compilers: Found library: -lm compilers: Checking arg -latomic compilers: Found library: -latomic compilers: Checking arg -lpthread compilers: Found library: -lpthread compilers: Checking arg -L/usr/lib64 compilers: Checking arg -L/opt/FJSVxos/mmm/lib64 compilers: Found library directory: -L/opt/FJSVxos/mmm/lib64 compilers: Checking arg -L/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64/nofjobj compilers: Found library directory: -L/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj compilers: Checking arg -T/opt/FJSVxos/mmm/util/bss-2mb.lds compilers: Unknown arg -T/opt/FJSVxos/mmm/util/bss-2mb.lds compilers: Checking arg -lm compilers: Checking arg -lrt compilers: Found library: -lrt compilers: Checking arg -lpthread compilers: Checking arg -lelf compilers: Found library: -lelf compilers: Checking arg -ldl compilers: Checking arg -lgcc_s compilers: Found library: -lgcc_s compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg -lc compilers: Skipping system library: -lc compilers: Checking arg -lgcc_s compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg -lc compilers: Skipping system library: -lc compilers: Checking arg /usr/lib/gcc/aarch64-redhat-linux/8/crtend.o compilers: Unknown arg /usr/lib/gcc/aarch64-redhat-linux/8/crtend.o compilers: Checking arg /usr/lib64/crtn.o compilers: Unknown arg /usr/lib64/crtn.o compilers: Checking arg FCC: compilers: Unknown arg FCC: compilers: Checking arg Fujitsu compilers: Unknown arg Fujitsu compilers: Checking arg C/C++ compilers: Unknown arg C/C++ compilers: Checking arg Compiler compilers: Unknown arg Compiler compilers: Checking arg 4.5.0 compilers: Unknown arg 4.5.0 compilers: Checking arg tcsds-1.2.31 compilers: Unknown arg tcsds-1.2.31 compilers: Checking arg simulating compilers: Unknown arg simulating compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 6.1 compilers: Unknown arg 6.1 compilers: Libraries needed to link Cxx code with another linker: ['-lfjprofmpi', '-Wl,-rpath,/usr/lib/gcc/aarch64-redhat-linux/8', '-L/usr/lib/gcc/aarch64-redhat-linux/8', '-ldl', '-Wl,-rpath,/opt/FJSVxtclanga/.common/MECA024/lib64', '-L/opt/FJSVxtclanga/.common/MECA024/lib64', '-lmpi_cxx', '-lmpi', '-lfjstring_internal', '-Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64', '-L/opt/FJSVxtclanga/tcsds-1.2.31/lib64', '-lfjomphk', '-lfjomp', '-lfj90i', '-lfj90fmt_sve', '-lfj90f', '-lfjsrcinfo', '-lfjcrt', '-lfjompcrt', '-lfjprofcore', '-lfjprofomp', '-lfjc++', '-lfjc++abi', '-lfjdemgl', '-lmpg', '-lm', '-latomic', '-lpthread', '-Wl,-rpath,/opt/FJSVxos/mmm/lib64', '-L/opt/FJSVxos/mmm/lib64', '-Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj', '-L/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj', '-lrt', '-lelf', '-lgcc_s'] compilers: Check that Cxx libraries can be used with C as linker ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -lfjprofmpi -Wl,-rpath,/usr/lib/gcc/aarch64-redhat-linux/8 -L/usr/lib/gcc/aarch64-redhat-linux/8 -ldl -Wl,-rpath,/opt/FJSVxtclanga/.common/MECA024/lib64 -L/opt/FJSVxtclanga/.common/MECA024/lib64 -lmpi_cxx -lmpi -lfjstring_internal -Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64 -L/opt/FJSVxtclanga/tcsds-1.2.31/lib64 -lfjomphk -lfjomp -lfj90i -lfj90fmt_sve -lfj90f -lfjsrcinfo -lfjcrt -lfjompcrt -lfjprofcore -lfjprofomp -lfjc++ -lfjc++abi -lfjdemgl -lmpg -lm -latomic -lpthread -Wl,-rpath,/opt/FJSVxos/mmm/lib64 -L/opt/FJSVxos/mmm/lib64 -Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj -L/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj -lrt -lelf -lgcc_s -ldl ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -lfjprofmpi -Wl,-rpath,/usr/lib/gcc/aarch64-redhat-linux/8 -L/usr/lib/gcc/aarch64-redhat-linux/8 -ldl -Wl,-rpath,/opt/FJSVxtclanga/.common/MECA024/lib64 -L/opt/FJSVxtclanga/.common/MECA024/lib64 -lmpi_cxx -lmpi -lfjstring_internal -Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64 -L/opt/FJSVxtclanga/tcsds-1.2.31/lib64 -lfjomphk -lfjomp -lfj90i -lfj90fmt_sve -lfj90f -lfjsrcinfo -lfjcrt -lfjompcrt -lfjprofcore -lfjprofomp -lfjc++ -lfjc++abi -lfjdemgl -lmpg -lm -latomic -lpthread -Wl,-rpath,/opt/FJSVxos/mmm/lib64 -L/opt/FJSVxos/mmm/lib64 -Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj -L/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj -lrt -lelf -lgcc_s -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm ======== Checking running linked program ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -lfjprofmpi -Wl,-rpath,/usr/lib/gcc/aarch64-redhat-linux/8 -L/usr/lib/gcc/aarch64-redhat-linux/8 -ldl -Wl,-rpath,/opt/FJSVxtclanga/.common/MECA024/lib64 -L/opt/FJSVxtclanga/.common/MECA024/lib64 -lmpi_cxx -lmpi -lfjstring_internal -Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64 -L/opt/FJSVxtclanga/tcsds-1.2.31/lib64 -lfjomphk -lfjomp -lfj90i -lfj90fmt_sve -lfj90f -lfjsrcinfo -lfjcrt -lfjompcrt -lfjprofcore -lfjprofomp -lfjc++ -lfjc++abi -lfjdemgl -lmpg -lm -latomic -lpthread -Wl,-rpath,/opt/FJSVxos/mmm/lib64 -L/opt/FJSVxos/mmm/lib64 -Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj -L/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj -lrt -lelf -lgcc_s -ldl Testing executable /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest to see if it can be run Executing: /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest compilers: Check that Cxx libraries can be used with Fortran as linker ===== Checking compiler Executing: mpifrt -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -fPIC -O /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.F90 Successful compile: Source: program main end ===== Checking linker Executing: mpifrt -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -fPIC -O /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: mpifrt -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest -fPIC -O /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -lfjprofmpi -Wl,-rpath,/usr/lib/gcc/aarch64-redhat-linux/8 -L/usr/lib/gcc/aarch64-redhat-linux/8 -ldl -Wl,-rpath,/opt/FJSVxtclanga/.common/MECA024/lib64 -L/opt/FJSVxtclanga/.common/MECA024/lib64 -lmpi_cxx -lmpi -lfjstring_internal -Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64 -L/opt/FJSVxtclanga/tcsds-1.2.31/lib64 -lfjomphk -lfjomp -lfj90i -lfj90fmt_sve -lfj90f -lfjsrcinfo -lfjcrt -lfjompcrt -lfjprofcore -lfjprofomp -lfjc++ -lfjc++abi -lfjdemgl -lmpg -lm -latomic -lpthread -Wl,-rpath,/opt/FJSVxos/mmm/lib64 -L/opt/FJSVxos/mmm/lib64 -Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj -L/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj -lrt -lelf -lgcc_s -ldl ===== Checking linker Executing: mpifrt -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -fPIC -O /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: mpifrt -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest -fPIC -O /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -lfjprofmpi -Wl,-rpath,/usr/lib/gcc/aarch64-redhat-linux/8 -L/usr/lib/gcc/aarch64-redhat-linux/8 -ldl -Wl,-rpath,/opt/FJSVxtclanga/.common/MECA024/lib64 -L/opt/FJSVxtclanga/.common/MECA024/lib64 -lmpi_cxx -lmpi -lfjstring_internal -Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64 -L/opt/FJSVxtclanga/tcsds-1.2.31/lib64 -lfjomphk -lfjomp -lfj90i -lfj90fmt_sve -lfj90f -lfjsrcinfo -lfjcrt -lfjompcrt -lfjprofcore -lfjprofomp -lfjc++ -lfjc++abi -lfjdemgl -lmpg -lm -latomic -lpthread -Wl,-rpath,/opt/FJSVxos/mmm/lib64 -L/opt/FJSVxos/mmm/lib64 -Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj -L/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj -lrt -lelf -lgcc_s -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm ======== Checking running linked program ===== Checking linker Executing: mpifrt -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -fPIC -O /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: mpifrt -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest -fPIC -O /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -lfjprofmpi -Wl,-rpath,/usr/lib/gcc/aarch64-redhat-linux/8 -L/usr/lib/gcc/aarch64-redhat-linux/8 -ldl -Wl,-rpath,/opt/FJSVxtclanga/.common/MECA024/lib64 -L/opt/FJSVxtclanga/.common/MECA024/lib64 -lmpi_cxx -lmpi -lfjstring_internal -Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64 -L/opt/FJSVxtclanga/tcsds-1.2.31/lib64 -lfjomphk -lfjomp -lfj90i -lfj90fmt_sve -lfj90f -lfjsrcinfo -lfjcrt -lfjompcrt -lfjprofcore -lfjprofomp -lfjc++ -lfjc++abi -lfjdemgl -lmpg -lm -latomic -lpthread -Wl,-rpath,/opt/FJSVxos/mmm/lib64 -L/opt/FJSVxos/mmm/lib64 -Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj -L/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj -lrt -lelf -lgcc_s -ldl Testing executable /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest to see if it can be run Executing: /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest Executing: mpiFCC -V ============================================================================================= TESTING: checkFortranNameMangling from config.compilers(config/BuildSystem/config/compilers.py:873) Checks Fortran name mangling, and defines HAVE_FORTRAN_UNDERSCORE, HAVE_FORTRAN_NOUNDERSCORE, HAVE_FORTRAN_CAPS Testing Fortran mangling type underscore with code void d1chk_(void){return;} ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1chk_(void){return;} ===== Checking linker Executing: mpifrt -c -o /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -fPIC -O /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.F90 Successful compile: Source: program main call d1chk() end Executing: mpifrt -o /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest -fPIC -O /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.o /home/ra010009/a04199/petsc-rz04nngc/config.compilers/confc.o -ldl compilers: Fortran name mangling is underscore Defined "HAVE_FORTRAN_UNDERSCORE" to "1" Executing: mpifrt --version stdout: frt (FRT) 4.5.0 20210226 Copyright FUJITSU LIMITED 2019-2021 Defined "FORTRAN_CHARLEN_T" to "int" ============================================================================================= TESTING: checkFortranNameManglingDouble from config.compilers(config/BuildSystem/config/compilers.py:911) Checks if symbols containing an underscore append an extra underscore, and defines HAVE_FORTRAN_UNDERSCORE_UNDERSCORE if necessary ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1_chk__(void){return;} ===== Checking linker Executing: mpifrt -c -o /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -fPIC -O /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.F90 Successful compile: Source: program main call d1_chk() end Executing: mpifrt -o /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest -fPIC -O /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.o /home/ra010009/a04199/petsc-rz04nngc/config.compilers/confc.o -ldl Possible ERROR while running linker: exit code 1 stderr: /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.o: In function `MAIN__': /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.F90:2: undefined reference to `d1_chk_' ============================================================================================= TESTING: checkFortranLibraries from config.compilers(config/BuildSystem/config/compilers.py:921) Substitutes for FLIBS the libraries needed to link with Fortran This macro is intended to be used in those situations when it is necessary to mix, e.g. C++ and Fortran 77, source code into a single program or shared library. For example, if object files from a C++ and Fortran 77 compiler must be linked together, then the C++ compiler/linker must be used for linking (since special C++-ish things need to happen at link time like calling global constructors, instantiating templates, enabling exception support, etc.). However, the Fortran 77 intrinsic and run-time libraries must be linked in as well, but the C++ compiler/linker does not know how to add these Fortran 77 libraries. This code was translated from the autoconf macro which was packaged in its current form by Matthew D. Langston . However, nearly all of this macro came from the OCTAVE_FLIBS macro in octave-2.0.13/aclocal.m4, and full credit should go to John W. Eaton for writing this extremely useful macro. ===== Checking linker Executing: mpifrt -c -o /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -fPIC -O /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.F90 Successful compile: Source: program main #include call MPI_Allreduce() end Executing: mpifrt -o /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest -fPIC -O /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.o -ldl ===== Checking compiler Executing: mpifrt -c -o /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -fPIC -O /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.F90 Successful compile: Source: subroutine asub() print*,'testing' call MPI_Allreduce() return end ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.c Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.c", line 9: warning: last line of file ends without a newline ^ Source: #include "confdefs.h" #include "conffix.h" extern void asub_(void); int main(int argc,char **args) { asub_(); return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.o /home/ra010009/a04199/petsc-rz04nngc/config.compilers/confc.o -ldl Possible ERROR while running linker: exit code 1 stderr: /home/ra010009/a04199/petsc-rz04nngc/config.compilers/confc.o: In function `asub_': /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.F90:3: undefined reference to `mpi_allreduce_' Fortran code cannot directly be linked with C linker, therefore will determine needed Fortran libraries Executing: mpifrt -c -o /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -fPIC -O /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.F90 Successful compile: Source: program main end Executing: mpifrt -o /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest -v -fPIC -O /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.o -ldl stdout: GNU ld version 2.30-79.el8 /usr/bin/ld --build-id --eh-frame-hdr -m aarch64linux -dynamic-linker /lib/ld-linux-aarch64.so.1 /usr/lib64/crt1.o /usr/lib64/crti.o /usr/lib/gcc/aarch64-redhat-linux/8/crtbegin.o -lfjprofmpif -L/usr/lib/gcc/aarch64-redhat-linux/8 -o /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest -v /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.o -ldl -L/opt/FJSVxtclanga/.common/MECA024/lib64 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lfjstring_internal /opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64/fjhpctag.o /opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64/fjlang7.o /opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64/fj90rt0.o -L/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64 -lfj90i -lfj90fmt_sve -lfj90f -lfjsrcinfo -lfjprofcore -lfjprofomp -lmpg -L/usr/lib64 -L/opt/FJSVxos/mmm/lib64 -L/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64/nofjobj -T/opt/FJSVxos/mmm/util/bss-2mb.lds -lm -lrt -lpthread -lelf -ldl -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/aarch64-redhat-linux/8/crtend.o /usr/lib64/crtn.o Possible ERROR while running linker: stdout: GNU ld version 2.30-79.el8 /usr/bin/ld --build-id --eh-frame-hdr -m aarch64linux -dynamic-linker /lib/ld-linux-aarch64.so.1 /usr/lib64/crt1.o /usr/lib64/crti.o /usr/lib/gcc/aarch64-redhat-linux/8/crtbegin.o -lfjprofmpif -L/usr/lib/gcc/aarch64-redhat-linux/8 -o /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest -v /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.o -ldl -L/opt/FJSVxtclanga/.common/MECA024/lib64 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lfjstring_internal /opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64/fjhpctag.o /opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64/fjlang7.o /opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64/fj90rt0.o -L/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64 -lfj90i -lfj90fmt_sve -lfj90f -lfjsrcinfo -lfjprofcore -lfjprofomp -lmpg -L/usr/lib64 -L/opt/FJSVxos/mmm/lib64 -L/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64/nofjobj -T/opt/FJSVxos/mmm/util/bss-2mb.lds -lm -lrt -lpthread -lelf -ldl -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/aarch64-redhat-linux/8/crtend.o /usr/lib64/crtn.ostderr: frt: Fujitsu Fortran Compiler 4.5.0 tcsds-1.2.31 compilers: Checking arg GNU compilers: Unknown arg GNU compilers: Checking arg ld compilers: Unknown arg ld compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 2.30-79.el8 compilers: Unknown arg 2.30-79.el8 compilers: Checking arg /usr/bin/ld compilers: Unknown arg /usr/bin/ld compilers: Checking arg --build-id compilers: Unknown arg --build-id compilers: Checking arg --eh-frame-hdr compilers: Unknown arg --eh-frame-hdr compilers: Checking arg -m compilers: Unknown arg -m compilers: Checking arg aarch64linux compilers: Unknown arg aarch64linux compilers: Checking arg -dynamic-linker compilers: Unknown arg -dynamic-linker compilers: Checking arg /lib/ld-linux-aarch64.so.1 compilers: Unknown arg /lib/ld-linux-aarch64.so.1 compilers: Checking arg /usr/lib64/crt1.o compilers: Unknown arg /usr/lib64/crt1.o compilers: Checking arg /usr/lib64/crti.o compilers: Unknown arg /usr/lib64/crti.o compilers: Checking arg /usr/lib/gcc/aarch64-redhat-linux/8/crtbegin.o compilers: Unknown arg /usr/lib/gcc/aarch64-redhat-linux/8/crtbegin.o compilers: Checking arg -lfjprofmpif compilers: Found library: -lfjprofmpif compilers: Checking arg -L/usr/lib/gcc/aarch64-redhat-linux/8 compilers: Found library directory: -L/usr/lib/gcc/aarch64-redhat-linux/8 compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest compilers: Unknown arg /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.o compilers: Unknown arg /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.o compilers: Checking arg -ldl compilers: Found library: -ldl compilers: Checking arg -L/opt/FJSVxtclanga/.common/MECA024/lib64 compilers: Found library directory: -L/opt/FJSVxtclanga/.common/MECA024/lib64 compilers: Checking arg -lmpi_usempif08 compilers: Found library: -lmpi_usempif08 compilers: Checking arg -lmpi_usempi_ignore_tkr compilers: Found library: -lmpi_usempi_ignore_tkr compilers: Checking arg -lmpi_mpifh compilers: Found library: -lmpi_mpifh compilers: Checking arg -lmpi compilers: Found library: -lmpi compilers: Checking arg -lfjstring_internal compilers: Found library: -lfjstring_internal compilers: Checking arg /opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64/fjhpctag.o compilers: Unknown arg /opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64/fjhpctag.o compilers: Checking arg /opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64/fjlang7.o compilers: Unknown arg /opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64/fjlang7.o compilers: Checking arg /opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64/fj90rt0.o compilers: Unknown arg /opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64/fj90rt0.o compilers: Checking arg -L/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64 compilers: Found library directory: -L/opt/FJSVxtclanga/tcsds-1.2.31/lib64 compilers: Checking arg -lfj90i compilers: Found library: -lfj90i compilers: Checking arg -lfj90fmt_sve compilers: Found library: -lfj90fmt_sve compilers: Checking arg -lfj90f compilers: Found library: -lfj90f compilers: Checking arg -lfjsrcinfo compilers: Found library: -lfjsrcinfo compilers: Checking arg -lfjprofcore compilers: Found library: -lfjprofcore compilers: Checking arg -lfjprofomp compilers: Found library: -lfjprofomp compilers: Checking arg -lmpg compilers: Found library: -lmpg compilers: Checking arg -L/usr/lib64 compilers: Checking arg -L/opt/FJSVxos/mmm/lib64 compilers: Found library directory: -L/opt/FJSVxos/mmm/lib64 compilers: Checking arg -L/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64/nofjobj compilers: Found library directory: -L/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj compilers: Checking arg -T/opt/FJSVxos/mmm/util/bss-2mb.lds compilers: Unknown arg -T/opt/FJSVxos/mmm/util/bss-2mb.lds compilers: Checking arg -lm compilers: Found library: -lm compilers: Checking arg -lrt compilers: Found library: -lrt compilers: Checking arg -lpthread compilers: Found library: -lpthread compilers: Checking arg -lelf compilers: Found library: -lelf compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -lgcc_s compilers: Found library: -lgcc_s compilers: Checking arg -lgcc compilers: Found system library therefore skipping: -lgcc compilers: Checking arg -lc compilers: Found system library therefore skipping: -lc compilers: Checking arg -lgcc_s compilers: Already in lflags: -lgcc_s compilers: Checking arg -lgcc compilers: Found system library therefore skipping: -lgcc compilers: Checking arg /usr/lib/gcc/aarch64-redhat-linux/8/crtend.o compilers: Unknown arg /usr/lib/gcc/aarch64-redhat-linux/8/crtend.o compilers: Checking arg /usr/lib64/crtn.o compilers: Unknown arg /usr/lib64/crtn.o compilers: Checking arg frt: compilers: Unknown arg frt: compilers: Checking arg Fujitsu compilers: Unknown arg Fujitsu compilers: Checking arg Fortran compilers: Unknown arg Fortran compilers: Checking arg Compiler compilers: Unknown arg Compiler compilers: Checking arg 4.5.0 compilers: Unknown arg 4.5.0 compilers: Checking arg tcsds-1.2.31 compilers: Unknown arg tcsds-1.2.31 compilers: Libraries needed to link Fortran code with the C linker: ['-lfjprofmpif', '-Wl,-rpath,/usr/lib/gcc/aarch64-redhat-linux/8', '-L/usr/lib/gcc/aarch64-redhat-linux/8', '-ldl', '-Wl,-rpath,/opt/FJSVxtclanga/.common/MECA024/lib64', '-L/opt/FJSVxtclanga/.common/MECA024/lib64', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lmpi', '-lfjstring_internal', '-Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64', '-L/opt/FJSVxtclanga/tcsds-1.2.31/lib64', '-lfj90i', '-lfj90fmt_sve', '-lfj90f', '-lfjsrcinfo', '-lfjprofcore', '-lfjprofomp', '-lmpg', '-Wl,-rpath,/opt/FJSVxos/mmm/lib64', '-L/opt/FJSVxos/mmm/lib64', '-Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj', '-L/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj', '-lm', '-lrt', '-lpthread', '-lelf', '-lgcc_s'] compilers: Libraries needed to link Fortran main with the C linker: [] compilers: Check that Fortran libraries can be used with C as the linker ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -lfjprofmpif -Wl,-rpath,/usr/lib/gcc/aarch64-redhat-linux/8 -L/usr/lib/gcc/aarch64-redhat-linux/8 -ldl -Wl,-rpath,/opt/FJSVxtclanga/.common/MECA024/lib64 -L/opt/FJSVxtclanga/.common/MECA024/lib64 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lfjstring_internal -Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64 -L/opt/FJSVxtclanga/tcsds-1.2.31/lib64 -lfj90i -lfj90fmt_sve -lfj90f -lfjsrcinfo -lfjprofcore -lfjprofomp -lmpg -Wl,-rpath,/opt/FJSVxos/mmm/lib64 -L/opt/FJSVxos/mmm/lib64 -Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj -L/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj -lm -lrt -lpthread -lelf -lgcc_s -ldl ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -lfjprofmpif -Wl,-rpath,/usr/lib/gcc/aarch64-redhat-linux/8 -L/usr/lib/gcc/aarch64-redhat-linux/8 -ldl -Wl,-rpath,/opt/FJSVxtclanga/.common/MECA024/lib64 -L/opt/FJSVxtclanga/.common/MECA024/lib64 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lfjstring_internal -Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64 -L/opt/FJSVxtclanga/tcsds-1.2.31/lib64 -lfj90i -lfj90fmt_sve -lfj90f -lfjsrcinfo -lfjprofcore -lfjprofomp -lmpg -Wl,-rpath,/opt/FJSVxos/mmm/lib64 -L/opt/FJSVxos/mmm/lib64 -Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj -L/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj -lm -lrt -lpthread -lelf -lgcc_s -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm ======== Checking running linked program ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -lfjprofmpif -Wl,-rpath,/usr/lib/gcc/aarch64-redhat-linux/8 -L/usr/lib/gcc/aarch64-redhat-linux/8 -ldl -Wl,-rpath,/opt/FJSVxtclanga/.common/MECA024/lib64 -L/opt/FJSVxtclanga/.common/MECA024/lib64 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lfjstring_internal -Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64 -L/opt/FJSVxtclanga/tcsds-1.2.31/lib64 -lfj90i -lfj90fmt_sve -lfj90f -lfjsrcinfo -lfjprofcore -lfjprofomp -lmpg -Wl,-rpath,/opt/FJSVxos/mmm/lib64 -L/opt/FJSVxos/mmm/lib64 -Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj -L/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj -lm -lrt -lpthread -lelf -lgcc_s -ldl Testing executable /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest to see if it can be run Executing: /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest compilers: Check that Fortran libraries can be used with C++ as linker compilers: Fortran libraries can be used from C++ ===== Checking compiler Executing: mpiFCC -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -Kfast,openmp -fPIC /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ===== Checking linker Executing: mpiFCC -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -Kfast,openmp -fPIC /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpiFCC -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -lfjprofmpif -Wl,-rpath,/usr/lib/gcc/aarch64-redhat-linux/8 -L/usr/lib/gcc/aarch64-redhat-linux/8 -ldl -Wl,-rpath,/opt/FJSVxtclanga/.common/MECA024/lib64 -L/opt/FJSVxtclanga/.common/MECA024/lib64 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lfjstring_internal -Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64 -L/opt/FJSVxtclanga/tcsds-1.2.31/lib64 -lfj90i -lfj90fmt_sve -lfj90f -lfjsrcinfo -lfjprofcore -lfjprofomp -lmpg -Wl,-rpath,/opt/FJSVxos/mmm/lib64 -L/opt/FJSVxos/mmm/lib64 -Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj -L/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj -lm -lrt -lpthread -lelf -lgcc_s -ldl ===== Checking linker Executing: mpiFCC -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -Kfast,openmp -fPIC /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpiFCC -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -lfjprofmpif -Wl,-rpath,/usr/lib/gcc/aarch64-redhat-linux/8 -L/usr/lib/gcc/aarch64-redhat-linux/8 -ldl -Wl,-rpath,/opt/FJSVxtclanga/.common/MECA024/lib64 -L/opt/FJSVxtclanga/.common/MECA024/lib64 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lfjstring_internal -Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64 -L/opt/FJSVxtclanga/tcsds-1.2.31/lib64 -lfj90i -lfj90fmt_sve -lfj90f -lfjsrcinfo -lfjprofcore -lfjprofomp -lmpg -Wl,-rpath,/opt/FJSVxos/mmm/lib64 -L/opt/FJSVxos/mmm/lib64 -Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj -L/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj -lm -lrt -lpthread -lelf -lgcc_s -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm ======== Checking running linked program ===== Checking linker Executing: mpiFCC -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -Kfast,openmp -fPIC /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpiFCC -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -lfjprofmpif -Wl,-rpath,/usr/lib/gcc/aarch64-redhat-linux/8 -L/usr/lib/gcc/aarch64-redhat-linux/8 -ldl -Wl,-rpath,/opt/FJSVxtclanga/.common/MECA024/lib64 -L/opt/FJSVxtclanga/.common/MECA024/lib64 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lfjstring_internal -Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64 -L/opt/FJSVxtclanga/tcsds-1.2.31/lib64 -lfj90i -lfj90fmt_sve -lfj90f -lfjsrcinfo -lfjprofcore -lfjprofomp -lmpg -Wl,-rpath,/opt/FJSVxos/mmm/lib64 -L/opt/FJSVxos/mmm/lib64 -Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj -L/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj -lm -lrt -lpthread -lelf -lgcc_s -ldl Testing executable /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest to see if it can be run Executing: /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest ============================================================================================= TESTING: checkFortranLinkingCxx from config.compilers(config/BuildSystem/config/compilers.py:1345) Check that Fortran can link C++ libraries ===== Checking compiler Executing: mpiFCC -c -o /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -Kfast,openmp -fPIC /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void foo(void){d1chk_();} ===== Checking compiler Executing: mpiFCC -c -o /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -Kfast,openmp -fPIC /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void d1chk_(void){return;} ===== Checking linker Executing: mpifrt -c -o /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -fPIC -O /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.F90 Successful compile: Source: program main call d1chk() end Executing: mpifrt -o /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest -fPIC -O /home/ra010009/a04199/petsc-rz04nngc/config.compilers/conftest.o /home/ra010009/a04199/petsc-rz04nngc/config.compilers/cxxobj.o /home/ra010009/a04199/petsc-rz04nngc/config.compilers/confc.o -ldl compilers: Fortran can link C++ functions ============================================================================================= TESTING: setupFrameworkCompilers from config.compilers(config/BuildSystem/config/compilers.py:1506) child config.compilers 23.997047 ============================================================================================= TESTING: configureClosure from config.utilities.closure(config/BuildSystem/config/utilities/closure.py:17) Determine if Apple ^close syntax is supported in C ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure/conftest.c Possible ERROR while running compiler: exit code 2 stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure/conftest.c", line 6: error: expected an identifier int (^closure)(int);; ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include int main() { int (^closure)(int);; return 0; } Compile failed inside link child config.utilities.closure 0.113664 ============================================================================================= TESTING: checkFortranTypeSizes from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:56) Check whether real*8 is supported and suggest flags which will allow support Executing: mpifrt -c -o /home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -fPIC -O /home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: stderr: Fortran diagnostic messages: program name(main) jwd2006i-i "/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran/conftest.F90", line 2: 'variable' is declared but never referenced. Source: program main real*8 variable end ============================================================================================= TESTING: checkFortranPreprocessor from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:73) Determine if Fortran handles preprocessing properly Executing: mpifrt -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -fPIC -O /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.F90 Successful compile: Source: program main #define dummy dummy #ifndef dummy fooey #endif end Output from compiling with -fPIC -O compilers: Fortran uses preprocessor ============================================================================================= TESTING: checkFortranDefineCompilerOption from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:96) Check if -WF,-Dfoobar or -Dfoobar is the compiler option to define a macro Executing: mpifrt -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -fPIC -O -DTesting /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.F90 Successful compile: Source: program main #define dummy dummy #ifndef Testing fooey #endif end Output from compiling with -fPIC -O -DTesting Defined make macro "FC_DEFINE_FLAG" to "-D" compilers: Fortran uses -D for defining macro ============================================================================================= TESTING: checkFortran90 from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:146) Determine whether the Fortran compiler handles F90 ===== Checking linker Executing: mpifrt -c -o /home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -fPIC -O /home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: stderr: Fortran diagnostic messages: program name(main) jwd2006i-i "/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran/conftest.F90", line 3: 'd' is declared but never referenced. Source: program main REAL(KIND=SELECTED_REAL_KIND(10)) d INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8) INTEGER (KIND=int) :: ierr ierr = 1 end Executing: mpifrt -o /home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran/conftest -fPIC -O /home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran/conftest.o -ldl Fortran compiler supports F90 ============================================================================================= TESTING: checkFortran90FreeForm from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:162) Determine whether the Fortran compiler handles F90FreeForm We also require that the compiler handles lines longer than 132 characters ===== Checking linker Executing: mpifrt -c -o /home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -fPIC -O /home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran/conftest.F90 Successful compile: Source: program main INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8); INTEGER (KIND=int) :: ierr; ierr = 1 end Executing: mpifrt -o /home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran/conftest -fPIC -O /home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran/conftest.o -ldl Defined "USING_F90FREEFORM" to "1" Fortran compiler supports F90FreeForm ============================================================================================= TESTING: checkFortran2003 from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:176) Determine whether the Fortran compiler handles F2003 ===== Checking linker Executing: mpifrt -c -o /home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -fPIC -O /home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: stderr: Fortran diagnostic messages: program name(Base_module) Module subprogram name(BasePrint) jwd2008i-i "/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran/conftest.F90", line 9: Dummy argument 'this' not used in this subprogram. Source: module Base_module type, public :: base_type integer :: A contains procedure, public :: Print => BasePrint end type base_type contains subroutine BasePrint(this) class(base_type) :: this end subroutine BasePrint end module Base_module program main use,intrinsic :: iso_c_binding Type(C_Ptr),Dimension(:),Pointer :: CArray character(kind=c_char),pointer :: nullc => null() character(kind=c_char,len=5),dimension(:),pointer::list1 allocate(list1(5)) CArray = (/(c_loc(list1(i)),i=1,5),c_loc(nullc)/) end Executing: mpifrt -o /home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran/conftest -fPIC -O /home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran/conftest.o -ldl Defined "USING_F2003" to "1" Fortran compiler supports F2003 ============================================================================================= TESTING: checkFortran90Array from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:211) Check for F90 array interfaces Executing: uname -s stdout: Linux ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void f90arraytest_(void* a1, void* a2,void* a3, void* i) { printf("arrays [%p %p %p]\n",a1,a2,a3); fflush(stdout); return; } void f90ptrtest_(void* a1, void* a2,void* a3, void* i, void* p1 ,void* p2, void* p3) { printf("arrays [%p %p %p]\n",a1,a2,a3); if ((p1 == p3) && (p1 != p2)) { printf("pointers match! [%p %p] [%p]\n",p1,p3,p2); fflush(stdout); } else { printf("pointers do not match! [%p %p] [%p]\n",p1,p3,p2); fflush(stdout); exit(111); } return; } ======== Checking running linked program ===== Checking linker Executing: mpifrt -c -o /home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -fPIC -O /home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran/conftest.F90 Successful compile: Source: program main Interface Subroutine f90ptrtest(p1,p2,p3,i) integer, pointer :: p1(:,:) integer, pointer :: p2(:,:) integer, pointer :: p3(:,:) integer i End Subroutine End Interface integer, pointer :: ptr1(:,:),ptr2(:,:) integer, target :: array(6:8,9:21) integer in in = 25 ptr1 => array ptr2 => array call f90arraytest(ptr1,ptr2,ptr1,in) call f90ptrtest(ptr1,ptr2,ptr1,in) end Executing: mpifrt -o /home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran/conftest -fPIC -O /home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran/conftest.o /home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran/fooobj.o -ldl Testing executable /home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran/conftest to see if it can be run Executing: /home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran/conftest Running Executable with threads to time it out at 60 Executing: /home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran/conftest stdout: arrays [0xffffffffd930 0xffffffffd930 0xffffffffd930] arrays [0xffffffffd878 0xffffffffd8d0 0xffffffffd878] pointers match! [0xffffffffd878 0xffffffffd878] [0xffffffffd8d0] Defined "HAVE_F90_2PTR_ARG" to "1" compilers: F90 compiler uses two arguments for array pointers ============================================================================================= TESTING: checkFortran90AssumedType from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:298) Executing: mpifrt -qversion ============================================================================================= TESTING: checkFortranModuleInclude from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:303) Figures out what flag is used to specify the include path for Fortran modules ===== Checking compiler Executing: mpifrt -c -o /home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -fPIC -O /home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran/conftest.F90 Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest ===== Checking linker Executing: mpifrt -c -o /home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran/confdir -fPIC -O /home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran/conftest.F90 Successful compile: Source: program main use configtest write(*,*) testint end Executing: mpifrt -o /home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran/conftest -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran/confdir -fPIC -O /home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran/conftest.o /home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran/configtest.o -ldl compilers: Fortran module include flag -I found ============================================================================================= TESTING: checkFortranModuleOutput from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:369) Figures out what flag is used to specify the output path for Fortran modules ===== Checking compiler Executing: mpifrt -c -o /home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -module /home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran/confdir -fPIC -O /home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran/conftest.F90 Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -module failed ===== Checking compiler Executing: mpifrt -c -o /home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -module:/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran/confdir -fPIC -O /home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran/conftest.F90 Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -module: failed ===== Checking compiler Executing: mpifrt -c -o /home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -fmod=/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran/confdir -fPIC -O /home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: stderr: frt: warning: Invalid suboption mod=/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran/confdir specified for -f. Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -fmod= failed ===== Checking compiler Executing: mpifrt -c -o /home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -J/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran/confdir -fPIC -O /home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: stderr: frt: warning: -J/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran/confdir is unrecognized option. Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -J failed ===== Checking compiler Executing: mpifrt -c -o /home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -M/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran/confdir -fPIC -O /home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran/conftest.F90 Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -M found ============================================================================================= TESTING: checkFortranTypeStar from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:135) Determine whether the Fortran compiler handles type(*) ===== Checking compiler Executing: mpifrt -c -o /home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -fPIC -O /home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran/conftest.F90 Successful compile: Source: program main interface subroutine a(b) type(*) :: b(:) end subroutine end interface end Defined "HAVE_FORTRAN_TYPE_STAR" to "1" Fortran compiler supports type(*) ============================================================================================= TESTING: checkFortranTypeInitialize from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:125) Determines if PETSc objects in Fortran are initialized by default (doesn't work with common blocks) Defined "FORTRAN_TYPE_INITIALIZE" to " = -2" Initializing Fortran objects ============================================================================================= TESTING: configureFortranFlush from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:116) ===== Checking linker Executing: mpifrt -c -o /home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -fPIC -O /home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran/conftest.F90 Successful compile: Source: program main call flush(6) end Executing: mpifrt -o /home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran/conftest -fPIC -O /home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran/conftest.o -ldl Defined "HAVE_FORTRAN_FLUSH" to "1" ============================================================================================= TESTING: checkDependencyGenerationFlag from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:414) Check if -MMD works for dependency generation, and add it if it does Trying FC compiler flag -MMD -MP Rejected FC compiler flag -MMD -MP because no dependency file (/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.d) was generated Trying FC compiler flag -MMD Rejected FC compiler flag -MMD because no dependency file (/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.d) was generated Trying FC compiler flag -xMMD Rejected FC compiler flag -xMMD because no dependency file (/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.d) was generated Trying FC compiler flag -qmakedep=gcc Rejected FC compiler flag -qmakedep=gcc Trying FC compiler flag -MD Rejected FC compiler flag -MD because no dependency file (/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.d) was generated Executing: mpifrt -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -fPIC -O -MMD -MP /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.F90 Successful compile: Source: program main end Output from compiling with -fPIC -O -MMD -MP Executing: mpifrt -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -fPIC -O -MMD /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.F90 Successful compile: Source: program main end Output from compiling with -fPIC -O -MMD Executing: mpifrt -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -fPIC -O -xMMD /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.F90 Successful compile: Source: program main end Output from compiling with -fPIC -O -xMMD Executing: mpifrt -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -fPIC -O -qmakedep=gcc /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.F90 Possible ERROR while running compiler: stderr: frt: warning: -qmakedep=gcc is unrecognized option. Source: program main end Output from compiling with -fPIC -O -qmakedep=gcc frt: warning: -qmakedep=gcc is unrecognized option. Rejecting compiler flag -qmakedep=gcc due to frt: warning: -qmakedep=gcc is unrecognized option. Executing: mpifrt -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -fPIC -O -MD /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.F90 Successful compile: Source: program main end Output from compiling with -fPIC -O -MD child config.compilersFortran 4.190643 ============================================================================================= TESTING: checkStdC from config.headers(config/BuildSystem/config/headers.py:105) ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c ======== Checking running linked program ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #define ISLOWER(c) ('a' <= (c) && (c) <= 'z') #define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c)) #define XOR(e, f) (((e) && !(f)) || (!(e) && (f))) int main() { int i; for(i = 0; i < 256; i++) if (XOR(islower(i), ISLOWER(i)) || toupper(i) != TOUPPER(i)) exit(2); exit(0); ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.o -ldl Testing executable /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest to see if it can be run Executing: /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest Running Executable with threads to time it out at 60 Executing: /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest ============================================================================================= TESTING: checkStat from config.headers(config/BuildSystem/config/headers.py:138) Checks whether stat file-mode macros are broken, and defines STAT_MACROS_BROKEN if they are Preprocessing source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(S_ISBLK) && defined(S_IFDIR) # if S_ISBLK (S_IFDIR) You lose. # endif #endif #if defined(S_ISBLK) && defined(S_IFCHR) # if S_ISBLK (S_IFCHR) You lose. # endif #endif #if defined(S_ISLNK) && defined(S_IFREG) # if S_ISLNK (S_IFREG) You lose. # endif #endif #if defined(S_ISSOCK) && defined(S_IFREG) # if S_ISSOCK (S_IFREG) You lose. # endif #endif Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c ============================================================================================= TESTING: checkSysWait from config.headers(config/BuildSystem/config/headers.py:173) Check for POSIX.1 compatible sys/wait.h, and defines HAVE_SYS_WAIT_H if found ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifndef WEXITSTATUS #define WEXITSTATUS(stat_val) ((unsigned)(stat_val) >> 8) #endif #ifndef WIFEXITED #define WIFEXITED(stat_val) (((stat_val) & 255) == 0) #endif int main() { int s; wait (&s); s = WIFEXITED (s) ? WEXITSTATUS (s) : 1; ; return 0; } Defined "HAVE_SYS_WAIT_H" to "1" ============================================================================================= TESTING: checkTime from config.headers(config/BuildSystem/config/headers.py:195) Checks if you can safely include both and , and if so defines TIME_WITH_SYS_TIME Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_TIME_H" to "1" Checking for header: sys/time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TIME_H" to "1" ============================================================================================= TESTING: checkMath from config.headers(config/BuildSystem/config/headers.py:201) Checks for the math headers and defines Checking for header: math.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double pi = M_PI; if (pi); ; return 0; } Found math #defines, like M_PI ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SETJMP_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib/fcc.pre" #pragma unknown_control_flow(_setjmp) #pragma unknown_control_flow(__setjmp) #pragma unknown_control_flow(__sigsetjmp) #pragma unknown_control_flow(vfork) # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/confdefs.h" # 2 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conffix.h" # 3 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "dos.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "dos.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c". : Preprocess stderr after filtering: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "dos.h" #include ^1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c".: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FCNTL_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FLOAT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib/fcc.pre" #pragma unknown_control_flow(_setjmp) #pragma unknown_control_flow(__setjmp) #pragma unknown_control_flow(__sigsetjmp) #pragma unknown_control_flow(vfork) # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/confdefs.h" # 2 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conffix.h" # 3 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "io.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "io.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c". : Preprocess stderr after filtering: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "io.h" #include ^1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c".: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_MALLOC_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_PWD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_STRINGS_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_UNISTD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_SYSINFO_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib/fcc.pre" #pragma unknown_control_flow(_setjmp) #pragma unknown_control_flow(__setjmp) #pragma unknown_control_flow(__sigsetjmp) #pragma unknown_control_flow(vfork) # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/confdefs.h" # 2 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conffix.h" # 3 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "machine/endian.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "machine/endian.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c". : Preprocess stderr after filtering: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "machine/endian.h" #include ^1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c".: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_PARAM_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_PROCFS_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_RESOURCE_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib/fcc.pre" #pragma unknown_control_flow(_setjmp) #pragma unknown_control_flow(__setjmp) #pragma unknown_control_flow(__sigsetjmp) #pragma unknown_control_flow(vfork) # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/confdefs.h" # 2 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conffix.h" # 3 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "sys/systeminfo.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "sys/systeminfo.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c". : Preprocess stderr after filtering: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "sys/systeminfo.h" #include ^1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c".: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TIMES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_UTSNAME_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_SOCKET_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_WAIT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_NETINET_IN_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_NETDB_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: direct.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib/fcc.pre" #pragma unknown_control_flow(_setjmp) #pragma unknown_control_flow(__setjmp) #pragma unknown_control_flow(__sigsetjmp) #pragma unknown_control_flow(vfork) # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/confdefs.h" # 2 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conffix.h" # 3 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "direct.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "direct.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c". : Preprocess stderr after filtering: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "direct.h" #include ^1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c".: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_TIME_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib/fcc.pre" #pragma unknown_control_flow(_setjmp) #pragma unknown_control_flow(__setjmp) #pragma unknown_control_flow(__sigsetjmp) #pragma unknown_control_flow(vfork) # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/confdefs.h" # 2 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conffix.h" # 3 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "Ws2tcpip.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "Ws2tcpip.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c". : Preprocess stderr after filtering: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "Ws2tcpip.h" #include ^1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c".: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TYPES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib/fcc.pre" #pragma unknown_control_flow(_setjmp) #pragma unknown_control_flow(__setjmp) #pragma unknown_control_flow(__sigsetjmp) #pragma unknown_control_flow(vfork) # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/confdefs.h" # 2 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conffix.h" # 3 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "WindowsX.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "WindowsX.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c". : Preprocess stderr after filtering: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "WindowsX.h" #include ^1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c".: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FLOAT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib/fcc.pre" #pragma unknown_control_flow(_setjmp) #pragma unknown_control_flow(__setjmp) #pragma unknown_control_flow(__sigsetjmp) #pragma unknown_control_flow(vfork) # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/confdefs.h" # 2 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conffix.h" # 3 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "ieeefp.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "ieeefp.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c". : Preprocess stderr after filtering: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "ieeefp.h" #include ^1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c".: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_STDINT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_PTHREAD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: inttypes.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_INTTYPES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: immintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib/fcc.pre" #pragma unknown_control_flow(_setjmp) #pragma unknown_control_flow(__setjmp) #pragma unknown_control_flow(__sigsetjmp) #pragma unknown_control_flow(vfork) # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/confdefs.h" # 2 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conffix.h" # 3 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "immintrin.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "immintrin.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c". : Preprocess stderr after filtering: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "immintrin.h" #include ^1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c".: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: zmmintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib/fcc.pre" #pragma unknown_control_flow(_setjmp) #pragma unknown_control_flow(__setjmp) #pragma unknown_control_flow(__sigsetjmp) #pragma unknown_control_flow(vfork) # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/confdefs.h" # 2 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conffix.h" # 3 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "zmmintrin.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "zmmintrin.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c". : Preprocess stderr after filtering: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "zmmintrin.h" #include ^1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c".: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SETJMP_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib/fcc.pre" #pragma unknown_control_flow(_setjmp) #pragma unknown_control_flow(__setjmp) #pragma unknown_control_flow(__sigsetjmp) #pragma unknown_control_flow(vfork) # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/confdefs.h" # 2 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conffix.h" # 3 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "dos.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "dos.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c". : Preprocess stderr after filtering: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "dos.h" #include ^1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c".: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FCNTL_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FLOAT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib/fcc.pre" #pragma unknown_control_flow(_setjmp) #pragma unknown_control_flow(__setjmp) #pragma unknown_control_flow(__sigsetjmp) #pragma unknown_control_flow(vfork) # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/confdefs.h" # 2 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conffix.h" # 3 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "io.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "io.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c". : Preprocess stderr after filtering: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "io.h" #include ^1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c".: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_MALLOC_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_PWD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_STRINGS_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_UNISTD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_SYSINFO_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib/fcc.pre" #pragma unknown_control_flow(_setjmp) #pragma unknown_control_flow(__setjmp) #pragma unknown_control_flow(__sigsetjmp) #pragma unknown_control_flow(vfork) # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/confdefs.h" # 2 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conffix.h" # 3 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "machine/endian.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "machine/endian.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c". : Preprocess stderr after filtering: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "machine/endian.h" #include ^1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c".: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_PARAM_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_PROCFS_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_RESOURCE_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib/fcc.pre" #pragma unknown_control_flow(_setjmp) #pragma unknown_control_flow(__setjmp) #pragma unknown_control_flow(__sigsetjmp) #pragma unknown_control_flow(vfork) # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/confdefs.h" # 2 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conffix.h" # 3 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "sys/systeminfo.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "sys/systeminfo.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c". : Preprocess stderr after filtering: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "sys/systeminfo.h" #include ^1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c".: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TIMES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_UTSNAME_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_SOCKET_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_WAIT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_NETINET_IN_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_NETDB_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: direct.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib/fcc.pre" #pragma unknown_control_flow(_setjmp) #pragma unknown_control_flow(__setjmp) #pragma unknown_control_flow(__sigsetjmp) #pragma unknown_control_flow(vfork) # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/confdefs.h" # 2 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conffix.h" # 3 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "direct.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "direct.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c". : Preprocess stderr after filtering: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "direct.h" #include ^1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c".: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_TIME_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib/fcc.pre" #pragma unknown_control_flow(_setjmp) #pragma unknown_control_flow(__setjmp) #pragma unknown_control_flow(__sigsetjmp) #pragma unknown_control_flow(vfork) # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/confdefs.h" # 2 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conffix.h" # 3 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "Ws2tcpip.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "Ws2tcpip.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c". : Preprocess stderr after filtering: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "Ws2tcpip.h" #include ^1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c".: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TYPES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib/fcc.pre" #pragma unknown_control_flow(_setjmp) #pragma unknown_control_flow(__setjmp) #pragma unknown_control_flow(__sigsetjmp) #pragma unknown_control_flow(vfork) # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/confdefs.h" # 2 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conffix.h" # 3 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "WindowsX.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "WindowsX.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c". : Preprocess stderr after filtering: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "WindowsX.h" #include ^1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c".: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FLOAT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib/fcc.pre" #pragma unknown_control_flow(_setjmp) #pragma unknown_control_flow(__setjmp) #pragma unknown_control_flow(__sigsetjmp) #pragma unknown_control_flow(vfork) # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/confdefs.h" # 2 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conffix.h" # 3 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "ieeefp.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "ieeefp.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c". : Preprocess stderr after filtering: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "ieeefp.h" #include ^1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c".: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_STDINT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_PTHREAD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: inttypes.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_INTTYPES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: immintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib/fcc.pre" #pragma unknown_control_flow(_setjmp) #pragma unknown_control_flow(__setjmp) #pragma unknown_control_flow(__sigsetjmp) #pragma unknown_control_flow(vfork) # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/confdefs.h" # 2 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conffix.h" # 3 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "immintrin.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "immintrin.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c". : Preprocess stderr after filtering: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "immintrin.h" #include ^1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c".: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: zmmintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib/fcc.pre" #pragma unknown_control_flow(_setjmp) #pragma unknown_control_flow(__setjmp) #pragma unknown_control_flow(__sigsetjmp) #pragma unknown_control_flow(vfork) # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/confdefs.h" # 2 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conffix.h" # 3 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "zmmintrin.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "zmmintrin.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c". : Preprocess stderr after filtering: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "zmmintrin.h" #include ^1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c".: ============================================================================================= TESTING: checkRecursiveMacros from config.headers(config/BuildSystem/config/headers.py:216) Checks that the preprocessor allows recursive macros, and if not defines HAVE_BROKEN_RECURSIVE_MACRO ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void a(int i, int j) {} #define a(b) a(b,__LINE__) int main() { a(0); ; return 0; } child config.headers 8.238127 ============================================================================================= TESTING: configureCacheDetails from config.utilities.cacheDetails(config/BuildSystem/config/utilities/cacheDetails.py:78) Try to determine the size and associativity of the cache. ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { ; return 0; } ======== Checking running linked program ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_LINESIZE()); fclose(output);; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails/conftest.o -ldl Testing executable /home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails/conftest to see if it can be run Executing: /home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails/conftest Running Executable with threads to time it out at 60 Executing: /home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails/conftest Defined "LEVEL1_DCACHE_LINESIZE" to "256" child config.utilities.cacheDetails 0.722528 ============================================================================================= TESTING: check_struct_sigaction from config.types(config/BuildSystem/config/types.py:42) Checks if "struct sigaction" exists in signal.h. This check is for C89 check. Checking for type: struct sigaction ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.types/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.types/conftest.c Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.types/conftest.c", line 11: warning: variable "a" was declared but never referenced struct sigaction a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { struct sigaction a;; return 0; } struct sigaction found Defined "HAVE_STRUCT_SIGACTION" to "1" ============================================================================================= TESTING: check__int64 from config.types(config/BuildSystem/config/types.py:48) Checks if __int64 exists. This is primarily for windows. Checking for type: __int64 ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.types/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.types/conftest.c Possible ERROR while running compiler: exit code 2 stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.types/conftest.c", line 11: error: identifier "__int64" is undefined __int64 a;; ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.types/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { __int64 a;; return 0; } __int64 found ============================================================================================= TESTING: checkSizeTypes from config.types(config/BuildSystem/config/types.py:54) Checks for types associated with sizes, such as size_t. Checking for type: size_t ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.types/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.types/conftest.c Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.types/conftest.c", line 11: warning: variable "a" was declared but never referenced size_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { size_t a;; return 0; } size_t found ============================================================================================= TESTING: checkFileTypes from config.types(config/BuildSystem/config/types.py:64) Checks for types associated with files, such as mode_t, off_t, etc. Checking for type: mode_t ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.types/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.types/conftest.c Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.types/conftest.c", line 11: warning: variable "a" was declared but never referenced mode_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { mode_t a;; return 0; } mode_t found Checking for type: off_t ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.types/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.types/conftest.c Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.types/conftest.c", line 11: warning: variable "a" was declared but never referenced off_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { off_t a;; return 0; } off_t found ============================================================================================= TESTING: checkIntegerTypes from config.types(config/BuildSystem/config/types.py:59) Checks for types associated with integers, such as int32_t. Checking for type: int32_t ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.types/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.types/conftest.c Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.types/conftest.c", line 11: warning: variable "a" was declared but never referenced int32_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { int32_t a;; return 0; } int32_t found ============================================================================================= TESTING: checkPID from config.types(config/BuildSystem/config/types.py:70) Checks for pid_t, and defines it if necessary Checking for type: pid_t ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.types/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.types/conftest.c Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.types/conftest.c", line 11: warning: variable "a" was declared but never referenced pid_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { pid_t a;; return 0; } pid_t found ============================================================================================= TESTING: checkUID from config.types(config/BuildSystem/config/types.py:74) Checks for uid_t and gid_t, and defines them if necessary Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.types /home/ra010009/a04199/petsc-rz04nngc/config.types/conftest.c ============================================================================================= TESTING: checkC99Complex from config.types(config/BuildSystem/config/types.py:81) Check for complex numbers in in C99 std Note that since PETSc source code uses _Complex we test specifically for that, not complex ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.types/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.types/conftest.c Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.types/conftest.c", line 6: warning: variable "x" was set but never used double _Complex x; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.types/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.types/conftest.c Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.types/conftest.c", line 6: warning: variable "x" was set but never used double _Complex x; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.types/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.types/conftest.o -ldl Defined "HAVE_C99_COMPLEX" to "1" ============================================================================================= TESTING: checkCxxComplex from config.types(config/BuildSystem/config/types.py:92) Check for complex numbers in namespace std ===== Checking linker Executing: mpiFCC -c -o /home/ra010009/a04199/petsc-rz04nngc/config.types/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.types -Kfast,openmp -fPIC /home/ra010009/a04199/petsc-rz04nngc/config.types/conftest.cc Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.types/conftest.cc", line 6: warning: variable "x" was declared but never referenced std::complex x; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { std::complex x; ; return 0; } Executing: mpiFCC -o /home/ra010009/a04199/petsc-rz04nngc/config.types/conftest -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.types/conftest.o -ldl Defined "HAVE_CXX_COMPLEX" to "1" ============================================================================================= TESTING: checkConst from config.types(config/BuildSystem/config/types.py:103) Checks for working const, and if not found defines it to empty string ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.types/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.types/conftest.c Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.types/conftest.c", line 25: warning: variable "x" is used before its value is set if (x[0]); ^ "/home/ra010009/a04199/petsc-rz04nngc/config.types/conftest.c", line 30: warning: variable "t" is used before its value is set *t++ = 0; ^ "/home/ra010009/a04199/petsc-rz04nngc/config.types/conftest.c", line 46: warning: variable "b" is used before its value is set struct s *b; b->j = 5; ^ Source: #include "confdefs.h" #include "conffix.h" int main() { /* Ultrix mips cc rejects this. */ typedef int charset[2]; const charset x; /* SunOS 4.1.1 cc rejects this. */ char const *const *ccp; char **p; /* NEC SVR4.0.2 mips cc rejects this. */ struct point {int x, y;}; static struct point const zero = {0,0}; /* AIX XL C 1.02.0.0 rejects this. It does not let you subtract one const X* pointer from another in an arm of an if-expression whose if-part is not a constant expression */ const char *g = "string"; ccp = &g + (g ? g-g : 0); /* HPUX 7.0 cc rejects these. */ ++ccp; p = (char**) ccp; ccp = (char const *const *) p; /* This section avoids unused variable warnings */ if (zero.x); if (x[0]); { /* SCO 3.2v4 cc rejects this. */ char *t; char const *s = 0 ? (char *) 0 : (char const *) 0; *t++ = 0; if (*s); } { /* Someone thinks the Sun supposedly-ANSI compiler will reject this. */ int x[] = {25, 17}; const int *foo = &x[0]; ++foo; } { /* Sun SC1.0 ANSI compiler rejects this -- but not the above. */ typedef const int *iptr; iptr p = 0; ++p; } { /* AIX XL C 1.02.0.0 rejects this saying "k.c", line 2.27: 1506-025 (S) Operand must be a modifiable lvalue. */ struct s { int j; const int *ap[3]; }; struct s *b; b->j = 5; } { /* ULTRIX-32 V3.1 (Rev 9) vcc rejects this */ const int foo = 10; /* Get rid of unused variable warning */ if (foo); } ; return 0; } ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: void * ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.types/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(void *)==8)*2-1]; Defined "SIZEOF_VOID_P" to "8" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: short ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.types/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(short)==2)*2-1]; Defined "SIZEOF_SHORT" to "2" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: int ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.types/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(int)==4)*2-1]; Defined "SIZEOF_INT" to "4" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.types/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(long)==8)*2-1]; Defined "SIZEOF_LONG" to "8" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long long ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.types/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(long long)==8)*2-1]; Defined "SIZEOF_LONG_LONG" to "8" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: enum ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.types/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(enum{ENUM_DUMMY})==4)*2-1]; Defined "SIZEOF_ENUM" to "4" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: size_t ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.types/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(size_t)==8)*2-1]; Defined "SIZEOF_SIZE_T" to "8" Defined "USING_64BIT_PTR" to "1" ============================================================================================= TESTING: checkVisibility from config.types(config/BuildSystem/config/types.py:193) ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.types/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { __attribute__((visibility ("default"))) int foo(void);; return 0; } Defined "USE_VISIBILITY_C" to "1" ===== Checking compiler Executing: mpiFCC -c -o /home/ra010009/a04199/petsc-rz04nngc/config.types/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.types -Kfast,openmp -fPIC /home/ra010009/a04199/petsc-rz04nngc/config.types/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { __attribute__((visibility ("default"))) int foo(void);; return 0; } Defined "USE_VISIBILITY_CXX" to "1" ============================================================================================= TESTING: checkMaxPathLen from config.types(config/BuildSystem/config/types.py:215) Determining PETSC_MAX_PATH_LEN ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.types/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(MAXPATHLEN) # define PETSC_MAX_PATH_LEN MAXPATHLEN #elif defined(MAX_PATH) # define PETSC_MAX_PATH_LEN MAX_PATH #elif defined(_MAX_PATH) # define PETSC_MAX_PATH_LEN _MAX_PATH #else # define PETSC_MAX_PATH_LEN 4096 #endif #define xstr(s) str(s) #define str(s) #s char petsc_max_path_len[] = xstr(PETSC_MAX_PATH_LEN); int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(MAXPATHLEN) # define PETSC_MAX_PATH_LEN MAXPATHLEN #elif defined(MAX_PATH) # define PETSC_MAX_PATH_LEN MAX_PATH #elif defined(_MAX_PATH) # define PETSC_MAX_PATH_LEN _MAX_PATH #else # define PETSC_MAX_PATH_LEN 4096 #endif #define xstr(s) str(s) #define str(s) #s char petsc_max_path_len[] = xstr(PETSC_MAX_PATH_LEN); Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.types /home/ra010009/a04199/petsc-rz04nngc/config.types/conftest.c Defined "MAX_PATH_LEN" to "4096" child config.types 6.098756 ============================================================================================= TESTING: configureMemAlign from PETSc.options.memAlign(config/PETSc/options/memAlign.py:29) Choose alignment Defined "MEMALIGN" to "16" Memory alignment is 16 child PETSc.options.memAlign 0.014685 ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -lfpe -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lfpe ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -lsocket -lnsl -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lsocket /usr/bin/ld: cannot find -lnsl ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -lfpe -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lfpe ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -lsocket -lnsl -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lsocket /usr/bin/ld: cannot find -lnsl ============================================================================================= TESTING: checkMath from config.libraries(config/BuildSystem/config/libraries.py:264) Check for sin() in libm, the math library Checking for functions [sin floor log10 pow] in library [''] [] ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include double sin(double); static void _check_sin() { double x,y; scanf("%lf",&x); y = sin(x); printf("%f",y); ; } #include double floor(double); static void _check_floor() { double x,y; scanf("%lf",&x); y = floor(x); printf("%f",y); ; } #include double log10(double); static void _check_log10() { double x,y; scanf("%lf",&x); y = log10(x); printf("%f",y); ; } #include double pow(double, double); static void _check_pow() { double x,y; scanf("%lf",&x); y = pow(x,x); printf("%f",y); ; } int main() { _check_sin(); _check_floor(); _check_log10(); _check_pow();; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -ldl CheckMath: using math library [] ============================================================================================= TESTING: checkMathErf from config.libraries(config/BuildSystem/config/libraries.py:283) Check for erf() in libm, the math library Checking for functions [erf] in library [] [] ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.c Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.c", line 5: warning: variable "y" was set but never used static void _check_erf() { double (*checkErf)(double) = erf;double x = 0,y; y = (*checkErf)(x); } ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_erf() { double (*checkErf)(double) = erf;double x = 0,y; y = (*checkErf)(x); } int main() { _check_erf();; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -ldl erf() found Defined "HAVE_ERF" to "1" ============================================================================================= TESTING: checkMathTgamma from config.libraries(config/BuildSystem/config/libraries.py:292) Check for tgamma() in libm, the math library Checking for functions [tgamma] in library [] [] ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.c Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.c", line 5: warning: variable "y" was set but never used static void _check_tgamma() { double (*checkTgamma)(double) = tgamma;double x = 0,y; y = (*checkTgamma)(x); } ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_tgamma() { double (*checkTgamma)(double) = tgamma;double x = 0,y; y = (*checkTgamma)(x); } int main() { _check_tgamma();; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -ldl tgamma() found Defined "HAVE_TGAMMA" to "1" ============================================================================================= TESTING: checkMathLgamma from config.libraries(config/BuildSystem/config/libraries.py:301) Check for lgamma() in libm, the math library Checking for functions [lgamma] in library [] [] ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include #include static void _check_lgamma() { double (*checkLgamma)(double) = lgamma;double x = 1,y; y = (*checkLgamma)(x);if (y != 0.) abort(); } int main() { _check_lgamma();; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -ldl lgamma() found Defined "HAVE_LGAMMA" to "1" ============================================================================================= TESTING: checkMathFenv from config.libraries(config/BuildSystem/config/libraries.py:314) Checks if can be used with FE_DFL_ENV Checking for functions [fesetenv] in library [] [] ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_fesetenv() { fesetenv(FE_DFL_ENV);; } int main() { _check_fesetenv();; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -ldl Defined "HAVE_FENV_H" to "1" ============================================================================================= TESTING: checkMathLog2 from config.libraries(config/BuildSystem/config/libraries.py:322) Check for log2() in libm, the math library Checking for functions [log2] in library [] [] ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_log2() { double (*checkLog2)(double) = log2; double x = 2.5, y = (*checkLog2)(x); } int main() { _check_log2();; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -ldl log2() found Defined "HAVE_LOG2" to "1" ============================================================================================= TESTING: checkRealtime from config.libraries(config/BuildSystem/config/libraries.py:331) Check for presence of clock_gettime() in realtime library (POSIX Realtime extensions) Checking for functions [clock_gettime] in library [''] [] ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_clock_gettime() { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; } int main() { _check_clock_gettime();; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -ldl realtime functions are linked in by default ============================================================================================= TESTING: checkDynamic from config.libraries(config/BuildSystem/config/libraries.py:347) Check for the header and libraries necessary for dynamic library manipulation Checking for functions [dlopen] in library ['dl'] [] ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } int main() { _check_dlopen();; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -ldl -ldl Defined "HAVE_LIBDL" to "1" Checking for header: dlfcn.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.types /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_DLFCN_H" to "1" child config.libraries 4.216875 ============================================================================================= TESTING: configureLibraryOptions from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:38) Sets PETSC_USE_DEBUG, PETSC_USE_INFO, PETSC_USE_LOG, PETSC_USE_CTABLE, PETSC_USE_FORTRAN_KERNELS, and PETSC_USE_AVX512_KERNELS Defined "USE_LOG" to "1" Executing: mpifcc -qversion Defined "USE_MALLOC_COALESCED" to "1" Defined "USE_INFO" to "1" Defined "USE_CTABLE" to "1" Defined "USE_BACKWARD_LOOP" to "1" **********Checking if running on BGL/IBM detected Checking for functions [bgl_perfctr_void] in library [''] [] ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char bgl_perfctr_void(); static void _check_bgl_perfctr_void() { bgl_perfctr_void(); } int main() { _check_bgl_perfctr_void();; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -ldl Possible ERROR while running linker: exit code 1 stderr: /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o: In function `_check_bgl_perfctr_void': /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.c:5: undefined reference to `bgl_perfctr_void' Checking for functions [ADIOI_BGL_Open] in library [''] [] ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ADIOI_BGL_Open(); static void _check_ADIOI_BGL_Open() { ADIOI_BGL_Open(); } int main() { _check_ADIOI_BGL_Open();; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -ldl Possible ERROR while running linker: exit code 1 stderr: /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o: In function `_check_ADIOI_BGL_Open': /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.c:5: undefined reference to `ADIOI_BGL_Open' *********BGL/IBM test failure Defined "USE_AVX512_KERNELS" to "1" Defined "Alignx(a,b)" to " " ============================================================================================= TESTING: configureISColorValueType from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:99) Sets PETSC_IS_COLORING_VALUE_TYPE, PETSC_MPIU_IS_COLORING_VALUE_TYPE, and PETSC_IS_COLORING_MAX as required by ISColoring Defined "MPIU_IS_COLORING_VALUE_TYPE" to "MPI_UNSIGNED_SHORT" Defined "IS_COLORING_MAX" to "USHRT_MAX" Defined "IS_COLORING_VALUE_TYPE" to "short" Defined "IS_COLORING_VALUE_TYPE_F" to "integer2" child PETSc.options.libraryOptions 0.767164 child config.atomics 0.000011 ============================================================================================= TESTING: checkSysinfo from config.functions(config/BuildSystem/config/functions.py:106) Check whether sysinfo takes three arguments, and if it does define HAVE_SYSINFO_3ARG Checking for functions [sysinfo] ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysinfo(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sysinfo) || defined (__stub___sysinfo) sysinfo_will_always_fail_with_ENOSYS(); #else sysinfo(); #endif ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -ldl Defined "HAVE_SYSINFO" to "1" ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c Possible ERROR while running compiler: exit code 4 stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c", line 9: catastrophic error: #error directive: "Cannot check sysinfo without special headers" # error "Cannot check sysinfo without special headers" ^ 1 catastrophic error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c". Compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #ifdef HAVE_SYS_SYSINFO_H # include #elif defined(HAVE_SYS_SYSTEMINFO_H) # include #else # error "Cannot check sysinfo without special headers" #endif int main() { char buf[10]; long count=10; sysinfo(1, buf, count); ; return 0; } Compile failed inside link ============================================================================================= TESTING: checkVPrintf from config.functions(config/BuildSystem/config/functions.py:125) Checks whether vprintf requires a char * last argument, and if it does defines HAVE_VPRINTF_CHAR ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c", line 8: warning: variable "Argp" is used before its value is set vprintf( "%d", Argp ); ^ Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vprintf( "%d", Argp ); ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -ldl ============================================================================================= TESTING: checkVFPrintf from config.functions(config/BuildSystem/config/functions.py:131) Checks whether vfprintf requires a char * last argument, and if it does defines HAVE_VFPRINTF_CHAR ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c", line 8: warning: variable "Argp" is used before its value is set vfprintf(stdout, "%d", Argp ); ^ Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vfprintf(stdout, "%d", Argp ); ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -ldl ============================================================================================= TESTING: checkVSNPrintf from config.functions(config/BuildSystem/config/functions.py:137) Checks whether vsnprintf requires a char * last argument, and if it does defines HAVE_VSNPRINTF_CHAR ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c", line 8: warning: variable "Argp" is used before its value is set vsnprintf(str,5, "%d", Argp ); ^ Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp;char str[6]; vsnprintf(str,5, "%d", Argp ); ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -ldl Defined "HAVE_VSNPRINTF" to "1" ============================================================================================= TESTING: checkNanosleep from config.functions(config/BuildSystem/config/functions.py:167) Check for functional nanosleep() - as time.h behaves differently for different compiler flags - like -std=c89 ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { struct timespec tp; tp.tv_sec = 0; tp.tv_nsec = (long)(1e9); nanosleep(&tp,0); ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -ldl Defined "HAVE_NANOSLEEP" to "1" ============================================================================================= TESTING: checkMemmove from config.functions(config/BuildSystem/config/functions.py:173) Check for functional memmove() - as MS VC requires correct includes to for this test ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { char c1[1], c2[1] = "c"; size_t n=1; memmove(c1,c2,n); ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -ldl Defined "HAVE_MEMMOVE" to "1" ============================================================================================= TESTING: checkSignalHandlerType from config.functions(config/BuildSystem/config/functions.py:143) Checks the type of C++ signals handlers, and defines SIGNAL_CAST to the correct value ===== Checking linker Executing: mpiFCC -c -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -Kfast,openmp -fPIC /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include static void myhandler(int sig) {} int main() { signal(SIGFPE,myhandler); ; return 0; } Executing: mpiFCC -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -ldl Defined "SIGNAL_CAST" to " " ============================================================================================= TESTING: checkFreeReturnType from config.functions(config/BuildSystem/config/functions.py:153) Checks whether free returns void or int, and defines HAVE_FREE_RETURN_INT ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c Possible ERROR while running compiler: exit code 2 stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c", line 6: warning: variable "p" is used before its value is set int ierr; void *p; ierr = free(p); return 0; ^ "/home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c", line 6: error: a value of type "void" cannot be assigned to an entity of type "int" int ierr; void *p; ierr = free(p); return 0; ^ "/home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c", line 8: warning: statement is unreachable return 0; ^ "/home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c", line 6: warning: variable "ierr" was set but never used int ierr; void *p; ierr = free(p); return 0; ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ierr; void *p; ierr = free(p); return 0; ; return 0; } Compile failed inside link ============================================================================================= TESTING: checkVariableArgumentLists from config.functions(config/BuildSystem/config/functions.py:159) Checks whether the variable argument list functionality is working ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c", line 7: warning: variable "l2" is used before its value is set va_copy(l1, l2); ^ in expansion of macro "va_copy" at line 7 "/home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c", line 10: warning: statement is unreachable return 0; ^ "/home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c", line 6: warning: variable "l1" was set but never used va_list l1, l2; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { va_list l1, l2; va_copy(l1, l2); return 0; ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -ldl Defined "HAVE_VA_COPY" to "1" ============================================================================================= TESTING: checkClassify from config.functions(config/BuildSystem/config/functions.py:85) Recursive decompose to rapidly classify functions as found or missing To confirm that a function is missing, we require a compile/link failure with only that function in a compilation unit. In contrast, we can confirm that many functions are present by compiling them all together in a large compilation unit. We optimistically compile everything together, then trim all functions that were named in the error message and bisect the result. The trimming is only an optimization to increase the likelihood of a big-batch compile succeeding; we do not rely on the compiler naming missing functions. Checking for functions [_getcwd bzero getrusage clock _set_output_format rand uname _snprintf _access stricmp sbreak fpresetsticky strcasecmp _mkdir sleep getpagesize readlink gethostname dlclose PXFGETARG realpath usleep dlsym socket drand48 snprintf getwd getcwd fork lseek time getdomainname _lseek dlopen popen memalign _sleep access _pipe dlerror gethostbyname fpsetsticky] ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _getcwd(); char bzero(); char getrusage(); char clock(); char _set_output_format(); char rand(); char uname(); char _snprintf(); char _access(); char stricmp(); char sbreak(); char fpresetsticky(); char strcasecmp(); char _mkdir(); char sleep(); char getpagesize(); char readlink(); char gethostname(); char dlclose(); char PXFGETARG(); char realpath(); char usleep(); char dlsym(); char socket(); char drand48(); char snprintf(); char getwd(); char getcwd(); char fork(); char lseek(); char time(); char getdomainname(); char _lseek(); char dlopen(); char popen(); char memalign(); char _sleep(); char access(); char _pipe(); char dlerror(); char gethostbyname(); char fpsetsticky(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif #if defined (__stub_fpresetsticky) || defined (__stub___fpresetsticky) fpresetsticky_will_always_fail_with_ENOSYS(); #else fpresetsticky(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub__mkdir) || defined (__stub____mkdir) _mkdir_will_always_fail_with_ENOSYS(); #else _mkdir(); #endif #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif #if defined (__stub__pipe) || defined (__stub____pipe) _pipe_will_always_fail_with_ENOSYS(); #else _pipe(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_fpsetsticky) || defined (__stub___fpsetsticky) fpsetsticky_will_always_fail_with_ENOSYS(); #else fpsetsticky(); #endif ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -ldl Possible ERROR while running linker: exit code 1 stderr: /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o: In function `main': /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c:221: warning: the `getwd' function is dangerous and should not be used. /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c:65: undefined reference to `_getcwd' /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c:89: undefined reference to `_set_output_format' /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c:107: undefined reference to `_snprintf' /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c:113: undefined reference to `_access' /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c:119: undefined reference to `stricmp' /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c:125: undefined reference to `sbreak' /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c:131: undefined reference to `fpresetsticky' /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c:143: undefined reference to `_mkdir' /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c:179: undefined reference to `PXFGETARG' /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c:257: undefined reference to `_lseek' /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c:281: undefined reference to `_sleep' /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c:293: undefined reference to `_pipe' /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c:311: undefined reference to `fpsetsticky' Checking for functions [bzero getrusage clock rand uname strcasecmp getpagesize readlink gethostname dlclose realpath] ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char bzero(); char getrusage(); char clock(); char rand(); char uname(); char strcasecmp(); char getpagesize(); char readlink(); char gethostname(); char dlclose(); char realpath(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -ldl Defined "HAVE_BZERO" to "1" Defined "HAVE_GETRUSAGE" to "1" Defined "HAVE_CLOCK" to "1" Defined "HAVE_RAND" to "1" Defined "HAVE_UNAME" to "1" Defined "HAVE_STRCASECMP" to "1" Defined "HAVE_GETPAGESIZE" to "1" Defined "HAVE_READLINK" to "1" Defined "HAVE_GETHOSTNAME" to "1" Defined "HAVE_DLCLOSE" to "1" Defined "HAVE_REALPATH" to "1" Checking for functions [usleep dlsym socket drand48 fork time getdomainname dlopen popen memalign dlerror gethostbyname] ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char usleep(); char dlsym(); char socket(); char drand48(); char fork(); char time(); char getdomainname(); char dlopen(); char popen(); char memalign(); char dlerror(); char gethostbyname(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -ldl Defined "HAVE_USLEEP" to "1" Defined "HAVE_DLSYM" to "1" Defined "HAVE_SOCKET" to "1" Defined "HAVE_DRAND48" to "1" Defined "HAVE_FORK" to "1" Defined "HAVE_TIME" to "1" Defined "HAVE_GETDOMAINNAME" to "1" Defined "HAVE_DLOPEN" to "1" Defined "HAVE_POPEN" to "1" Defined "HAVE_MEMALIGN" to "1" Defined "HAVE_DLERROR" to "1" Defined "HAVE_GETHOSTBYNAME" to "1" Checking for functions [_getcwd] ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -ldl Possible ERROR while running linker: exit code 1 stderr: /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o: In function `main': /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c:24: undefined reference to `_getcwd' Checking for functions [_set_output_format] ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _set_output_format(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -ldl Possible ERROR while running linker: exit code 1 stderr: /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o: In function `main': /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c:24: undefined reference to `_set_output_format' Checking for functions [_snprintf] ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -ldl Possible ERROR while running linker: exit code 1 stderr: /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o: In function `main': /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c:24: undefined reference to `_snprintf' Checking for functions [_access] ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -ldl Possible ERROR while running linker: exit code 1 stderr: /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o: In function `main': /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c:24: undefined reference to `_access' Checking for functions [stricmp] ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -ldl Possible ERROR while running linker: exit code 1 stderr: /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o: In function `main': /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c:24: undefined reference to `stricmp' Checking for functions [sbreak] ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -ldl Possible ERROR while running linker: exit code 1 stderr: /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o: In function `main': /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c:24: undefined reference to `sbreak' Checking for functions [fpresetsticky] ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fpresetsticky(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fpresetsticky) || defined (__stub___fpresetsticky) fpresetsticky_will_always_fail_with_ENOSYS(); #else fpresetsticky(); #endif ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -ldl Possible ERROR while running linker: exit code 1 stderr: /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o: In function `main': /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c:24: undefined reference to `fpresetsticky' Checking for functions [_mkdir] ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _mkdir(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__mkdir) || defined (__stub____mkdir) _mkdir_will_always_fail_with_ENOSYS(); #else _mkdir(); #endif ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -ldl Possible ERROR while running linker: exit code 1 stderr: /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o: In function `main': /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c:24: undefined reference to `_mkdir' Checking for functions [sleep] ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -ldl Defined "HAVE_SLEEP" to "1" Checking for functions [PXFGETARG] ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -ldl Possible ERROR while running linker: exit code 1 stderr: /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o: In function `main': /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c:24: undefined reference to `PXFGETARG' Checking for functions [snprintf] ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -ldl Defined "HAVE_SNPRINTF" to "1" Checking for functions [getwd] ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -ldl Possible ERROR while running linker: stderr: /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o: In function `main': /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c:24: warning: the `getwd' function is dangerous and should not be used. Defined "HAVE_GETWD" to "1" Checking for functions [getcwd] ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -ldl Defined "HAVE_GETCWD" to "1" Checking for functions [lseek] ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -ldl Defined "HAVE_LSEEK" to "1" Checking for functions [_lseek] ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -ldl Possible ERROR while running linker: exit code 1 stderr: /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o: In function `main': /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c:24: undefined reference to `_lseek' Checking for functions [_sleep] ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -ldl Possible ERROR while running linker: exit code 1 stderr: /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o: In function `main': /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c:24: undefined reference to `_sleep' Checking for functions [access] ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -ldl Defined "HAVE_ACCESS" to "1" Checking for functions [_pipe] ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _pipe(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__pipe) || defined (__stub____pipe) _pipe_will_always_fail_with_ENOSYS(); #else _pipe(); #endif ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -ldl Possible ERROR while running linker: exit code 1 stderr: /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o: In function `main': /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c:24: undefined reference to `_pipe' Checking for functions [fpsetsticky] ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fpsetsticky(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fpsetsticky) || defined (__stub___fpsetsticky) fpsetsticky_will_always_fail_with_ENOSYS(); #else fpsetsticky(); #endif ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -ldl Possible ERROR while running linker: exit code 1 stderr: /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o: In function `main': /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c:24: undefined reference to `fpsetsticky' ============================================================================================= TESTING: checkMmap from config.functions(config/BuildSystem/config/functions.py:179) Check for functional mmap() to allocate shared memory and define HAVE_MMAP ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { int fd; fd=open("/tmp/file",O_RDWR); mmap((void*)0,100,PROT_READ|PROT_WRITE,MAP_SHARED,fd,0); ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.functions/conftest.o -ldl Defined "HAVE_MMAP" to "1" child config.functions 11.984337 ============================================================================================= TESTING: configureMemorySize from config.utilities.getResidentSetSize(config/BuildSystem/config/utilities/getResidentSetSize.py:31) Try to determine how to measure the memory usage Defined "USE_PROC_FOR_SIZE" to "1" Using /proc for PetscMemoryGetCurrentUsage() child config.utilities.getResidentSetSize 0.003994 ============================================================================================= TESTING: configureFortranCommandLine from config.utilities.fortranCommandLine(config/BuildSystem/config/utilities/fortranCommandLine.py:27) Check for the mechanism to retrieve command line arguments in Fortran Checking for functions [] in library [''] [] ===== Checking linker Executing: mpifrt -c -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -fPIC -O /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.F90 Successful compile: Source: program main integer i character*(80) arg i = command_argument_count() call get_command_argument(i,arg) end Executing: mpifrt -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest -fPIC -O /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -ldl Defined "HAVE_FORTRAN_GET_COMMAND_ARGUMENT" to "1" child config.utilities.fortranCommandLine 0.368126 ============================================================================================= TESTING: configureFPTrap from config.utilities.FPTrap(config/BuildSystem/config/utilities/FPTrap.py:27) Checking the handling of floating point traps Checking for header: sigfpe.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.types /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib/fcc.pre" #pragma unknown_control_flow(_setjmp) #pragma unknown_control_flow(__setjmp) #pragma unknown_control_flow(__sigsetjmp) #pragma unknown_control_flow(vfork) # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/confdefs.h" # 2 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conffix.h" # 3 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "sigfpe.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "sigfpe.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c". : Preprocess stderr after filtering: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "sigfpe.h" #include ^1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c".: Checking for header: fpxcp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.types /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib/fcc.pre" #pragma unknown_control_flow(_setjmp) #pragma unknown_control_flow(__setjmp) #pragma unknown_control_flow(__sigsetjmp) #pragma unknown_control_flow(vfork) # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/confdefs.h" # 2 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conffix.h" # 3 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "fpxcp.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "fpxcp.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c". : Preprocess stderr after filtering: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "fpxcp.h" #include ^1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c".: Checking for header: floatingpoint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.types /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib/fcc.pre" #pragma unknown_control_flow(_setjmp) #pragma unknown_control_flow(__setjmp) #pragma unknown_control_flow(__sigsetjmp) #pragma unknown_control_flow(vfork) # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/confdefs.h" # 2 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conffix.h" # 3 "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c" stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "floatingpoint.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "floatingpoint.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c". : Preprocess stderr after filtering: "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c", line 3: error: cannot open source file "floatingpoint.h" #include ^1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c".: child config.utilities.FPTrap 0.257658 ============================================================================================= TESTING: configureFeatureTestMacros from config.utilities.featureTestMacros(config/BuildSystem/config/utilities/featureTestMacros.py:13) Checks if certain feature test macros are support ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros/conftest.c Possible ERROR while running compiler: exit code 4 stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros/conftest.c", line 4: catastrophic error: cannot open source file "sysctl.h" #include ^ 1 catastrophic error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros/conftest.c". Compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #define _POSIX_C_SOURCE 200112L #include int main() { ; return 0; } ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #include int main() { ; return 0; } Defined "_BSD_SOURCE" to "1" ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _DEFAULT_SOURCE #include int main() { ; return 0; } Defined "_DEFAULT_SOURCE" to "1" ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include int main() { cpu_set_t mset; CPU_ZERO(&mset);; return 0; } Defined "_GNU_SOURCE" to "1" ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include #include int main() { Dl_info info; if (dladdr(exit, &info));; return 0; } Defined "_GNU_SOURCE" to "1" child config.utilities.featureTestMacros 0.731529 ============================================================================================= TESTING: configureMissingUtypeTypedefs from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:55) Checks if u_short is undefined ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing/conftest.c", line 6: warning: variable "foo" was declared but never referenced u_short foo; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { u_short foo; ; return 0; } ============================================================================================= TESTING: configureMissingFunctions from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:61) Checks for SOCKETS ============================================================================================= TESTING: configureMissingSignals from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:79) Check for missing signals, and define MISSING_ if necessary ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGABRT; if (i); ; return 0; } ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGALRM; if (i); ; return 0; } ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGBUS; if (i); ; return 0; } ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCHLD; if (i); ; return 0; } ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCONT; if (i); ; return 0; } ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGFPE; if (i); ; return 0; } ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGHUP; if (i); ; return 0; } ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGILL; if (i); ; return 0; } ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGINT; if (i); ; return 0; } ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGKILL; if (i); ; return 0; } ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGPIPE; if (i); ; return 0; } ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGQUIT; if (i); ; return 0; } ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSEGV; if (i); ; return 0; } ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSTOP; if (i); ; return 0; } ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSYS; if (i); ; return 0; } ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTERM; if (i); ; return 0; } ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTRAP; if (i); ; return 0; } ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTSTP; if (i); ; return 0; } ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGURG; if (i); ; return 0; } ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR1; if (i); ; return 0; } ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR2; if (i); ; return 0; } ============================================================================================= TESTING: configureMissingGetdomainnamePrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:96) ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } ===== Checking linker Executing: mpiFCC -c -o /home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -Kfast,openmp -fPIC /home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Executing: mpiFCC -o /home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing/conftest -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing/conftest.o -ldl ============================================================================================= TESTING: configureMissingSrandPrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:121) ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #include int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } ===== Checking linker Executing: mpiFCC -c -o /home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -Kfast,openmp -fPIC /home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #include int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Executing: mpiFCC -o /home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing/conftest -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing/conftest.o -ldl child config.utilities.missing 5.613032 ============================================================================================= TESTING: checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:34) ============================================================================================= TESTING: configureSharedLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:49) Checks whether shared libraries should be used, for which you must - Specify --with-shared-libraries - Have found a working shared linker Defines PETSC_USE_SHARED_LIBRARIES if they are used Executing: uname -s stdout: Linux Defined make rule "shared_arch" with dependencies "shared_linux" and code [] Defined make macro "SONAME_FUNCTION" to "$(1).so.$(2)" Defined make macro "SL_LINKER_FUNCTION" to "-shared -Wl,-soname,$(call SONAME_FUNCTION,$(notdir $(1)),$(2))" Executing: mpifcc -v Defined make macro "BUILDSHAREDLIB" to "yes" Defined "USE_SHARED_LIBRARIES" to "1" ============================================================================================= TESTING: configureDynamicLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:94) Checks whether dynamic loading is available (with dlfcn.h and libdl) Defined "HAVE_DYNAMIC_LIBRARIES" to "1" ============================================================================================= TESTING: configureSerializedFunctions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:100) Defines PETSC_SERIALIZE_FUNCTIONS if they are used Requires shared libraries ============================================================================================= TESTING: checkSymbolResolution from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:109) Checks that dladdr() works ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/PETSc.options.sharedLibraries/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.sharedLibraries -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/PETSc.options.sharedLibraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include #include int main() { Dl_info info; if (dladdr(exit, &info)); ; return 0; } Defined "HAVE_DLADDR" to "1" child PETSc.options.sharedLibraries 0.250444 ============================================================================================= TESTING: configureScalarType from PETSc.options.scalarTypes(config/PETSc/options/scalarTypes.py:40) Choose between real and complex numbers Scalar type is real ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnormal(b); ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes/conftest.o -ldl Defined "HAVE_ISNORMAL" to "1" ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnan(b); ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes/conftest.o -ldl Defined "HAVE_ISNAN" to "1" ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isinf(b); ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes/conftest.o -ldl Defined "HAVE_ISINF" to "1" ============================================================================================= TESTING: configurePrecision from PETSc.options.scalarTypes(config/PETSc/options/scalarTypes.py:81) Set the default real number precision for PETSc objects Checking C compiler works with __float128 Checking for functions [logq] in library ['quadmath'] [] ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.c Possible ERROR while running compiler: exit code 4 stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.c", line 4: catastrophic error: cannot open source file "quadmath.h" #include ^ 1 catastrophic error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.c". Compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_logq() { __float128 f; logq(f);; } int main() { _check_logq();; return 0; } Compile failed inside link Defined "USE_REAL_DOUBLE" to "1" Defined make macro "PETSC_SCALAR_SIZE" to "64" Precision is double child PETSc.options.scalarTypes 1.402997 ============================================================================================= TESTING: configureMkdir from config.programs(config/BuildSystem/config/programs.py:22) Make sure we can have mkdir automatically make intermediate directories Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/mkdir...not found Checking for program /usr/share/Modules/bin/mkdir...not found Checking for program /usr/local/bin/mkdir...not found Checking for program /usr/bin/mkdir...found Executing: /usr/bin/mkdir -p .conftest/tmp Adding -p flag to /usr/bin/mkdir -p to automatically create directories Defined make macro "MKDIR" to "/usr/bin/mkdir -p" ============================================================================================= TESTING: configureAutoreconf from config.programs(config/BuildSystem/config/programs.py:44) Check for autoreconf Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/autoreconf...not found Checking for program /usr/share/Modules/bin/autoreconf...not found Checking for program /usr/local/bin/autoreconf...not found Checking for program /usr/bin/autoreconf...found Executing: ['/usr/bin/autoreconf'] autoreconf test successful! Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/libtoolize...not found Checking for program /usr/share/Modules/bin/libtoolize...not found Checking for program /usr/local/bin/libtoolize...not found Checking for program /usr/bin/libtoolize...found ============================================================================================= TESTING: configurePrograms from config.programs(config/BuildSystem/config/programs.py:71) Check for the programs needed to build and run PETSc Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/bash...not found Checking for program /usr/share/Modules/bin/bash...not found Checking for program /usr/local/bin/bash...not found Checking for program /usr/bin/bash...found Defined make macro "SHELL" to "/usr/bin/bash" Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/sed...not found Checking for program /usr/share/Modules/bin/sed...not found Checking for program /usr/local/bin/sed...not found Checking for program /usr/bin/sed...found Defined make macro "SED" to "/usr/bin/sed" Executing: /usr/bin/sed -i s/sed/sd/g "/home/ra010009/a04199/petsc-rz04nngc/config.programs/sed1" Adding SEDINPLACE cmd: /usr/bin/sed -i Defined make macro "SEDINPLACE" to "/usr/bin/sed -i" Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/mv...not found Checking for program /usr/share/Modules/bin/mv...not found Checking for program /usr/local/bin/mv...not found Checking for program /usr/bin/mv...found Defined make macro "MV" to "/usr/bin/mv" Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/cp...not found Checking for program /usr/share/Modules/bin/cp...not found Checking for program /usr/local/bin/cp...not found Checking for program /usr/bin/cp...found Defined make macro "CP" to "/usr/bin/cp" Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/grep...not found Checking for program /usr/share/Modules/bin/grep...not found Checking for program /usr/local/bin/grep...not found Checking for program /usr/bin/grep...found Defined make macro "GREP" to "/usr/bin/grep" Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/rm...not found Checking for program /usr/share/Modules/bin/rm...not found Checking for program /usr/local/bin/rm...not found Checking for program /usr/bin/rm...found Defined make macro "RM" to "/usr/bin/rm -f" Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/diff...not found Checking for program /usr/share/Modules/bin/diff...not found Checking for program /usr/local/bin/diff...not found Checking for program /usr/bin/diff...found Executing: "/usr/bin/diff" -w "/home/ra010009/a04199/petsc-rz04nngc/config.programs/diff1" "/home/ra010009/a04199/petsc-rz04nngc/config.programs/diff2" Defined make macro "DIFF" to "/usr/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /home/ra010009/a04199/petsc/lib/petsc/bin/win32fe/ps...not found Unable to find programs ['ps'] providing listing of the specific search path Warning accessing /usr/ucb gives errors: must be str, not builtin_function_or_method Warning accessing /usr/usb gives errors: must be str, not builtin_function_or_method Defined make macro "PYTHON" to "/usr/bin/python3" Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/m4...not found Checking for program /usr/share/Modules/bin/m4...not found Checking for program /usr/local/bin/m4...not found Checking for program /usr/bin/m4...found Defined make macro "M4" to "/usr/bin/m4" child config.programs 3.869633 ============================================================================================= TESTING: consistencyChecks from config.packages.make(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.make(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default ============================================================================================= TESTING: configureMake from config.packages.make(config/BuildSystem/config/packages/make.py:96) Check Guesses for GNU make Executing: gmake --version stdout: GNU Make 4.2.1 Built for aarch64-redhat-linux-gnu Copyright (C) 1988-2016 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/gmake...not found Checking for program /usr/share/Modules/bin/gmake...not found Checking for program /usr/local/bin/gmake...not found Checking for program /usr/bin/gmake...found Defined make macro "MAKE" to "/usr/bin/gmake" Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/make...not found Checking for program /usr/share/Modules/bin/make...not found Checking for program /usr/local/bin/make...not found Checking for program /usr/bin/make...found Defined make macro "MAKE_USER" to "make" ============================================================================================= TESTING: setupGNUMake from config.packages.make(config/BuildSystem/config/packages/make.py:150) Setup other GNU make stuff Executing: uname -s stdout: Linux Executing: uname -s stdout: Linux Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC})" and code [] Defined make rule "libcxx" with dependencies "${LIBNAME}(${OBJSCXX})" and code [] Defined make rule "libcu" with dependencies "${LIBNAME}(${OBJSCU})" and code [] Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} Defined make macro "OMAKE_PRINTDIR " to "/usr/bin/gmake --print-directory" Defined make macro "OMAKE" to "/usr/bin/gmake --no-print-directory" Defined make macro "MAKE_PAR_OUT_FLG" to "--output-sync=recurse" ============================================================================================= TESTING: configureMakeNP from config.packages.make(config/BuildSystem/config/packages/make.py:197) check no of cores on the build machine [perhaps to do make '-j ncores'] module multiprocessing found 50 cores: using make_np = 33 Defined make macro "MAKE_NP" to "33" Defined make macro "MAKE_TEST_NP" to "22" Defined make macro "MAKE_LOAD" to "75.0" Defined make macro "NPMAX" to "50" child config.packages.make 0.085897 ============================================================================================= TESTING: consistencyChecks from config.packages.X(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.X(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.X(config/BuildSystem/config/package.py:897) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional X Checking for library in Compiler specific search X: [] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [XSetWMName] in library [] [] ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char XSetWMName(); static void _check_XSetWMName() { XSetWMName(); } int main() { _check_XSetWMName();; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -ldl Possible ERROR while running linker: exit code 1 stderr: /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o: In function `_check_XSetWMName': /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.c:5: undefined reference to `XSetWMName' Checking for library in Compiler specific search X: ['libX11.a'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [XSetWMName] in library ['libX11.a'] [] ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char XSetWMName(); static void _check_XSetWMName() { XSetWMName(); } int main() { _check_XSetWMName();; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -lX11 -ldl Defined "HAVE_LIBX11" to "1" Checking for optional headers [] in Compiler specific search X: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in [] Found header files [] in [] Checking for headers ['X11/Xlib.h'] in Compiler specific search X: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['X11/Xlib.h'] in [] Checking include with compiler flags var CPPFLAGS [] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.types /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['X11/Xlib.h'] in [] ============================================================================================= TESTING: checkVersion from config.packages.X(config/BuildSystem/config/package.py:1026) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version For x unable to run preprocessor to obtain version information, skipping version check ============================================================================================= TESTING: checkSharedLibrary from config.packages.X(config/BuildSystem/config/package.py:955) By default we don't care about checking if the library is shared child config.packages.X 0.895792 ============================================================================================= TESTING: consistencyChecks from config.packages.hwloc(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.hwloc(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.hwloc 0.005677 ============================================================================================= TESTING: consistencyChecks from config.packages.valgrind(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: configureLibrary from config.packages.valgrind(config/BuildSystem/config/package.py:897) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional valgrind Not checking for library in Compiler specific search VALGRIND: [] because no functions given to check for ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for optional headers [] in Compiler specific search VALGRIND: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in [] Found header files [] in [] Checking for headers ['valgrind/valgrind.h'] in Compiler specific search VALGRIND: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in [] Checking include with compiler flags var CPPFLAGS [] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.types /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['valgrind/valgrind.h'] in [] ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { RUNNING_ON_VALGRIND; ; return 0; } Defined "HAVE_VALGRIND" to "1" Executing: uname -s stdout: Linux Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "valgrind/config.h" ;petscpkgver(VERSION); Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind /home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind/conftest.c" # 1 "/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib/fcc.pre" #pragma unknown_control_flow(_setjmp) #pragma unknown_control_flow(__setjmp) #pragma unknown_control_flow(__sigsetjmp) #pragma unknown_control_flow(vfork) # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind/conftest.c" # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind/confdefs.h" # 2 "/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind/conftest.c" # 1 "/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind/conffix.h" # 3 "/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind/conftest.c" ;petscpkgver(VERSION); stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind/conftest.c", line 3: error: cannot open source file "valgrind/config.h" #include "valgrind/config.h" ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include "valgrind/config.h" ;petscpkgver(VERSION); For valgrind need <= VERSION <= For valgrind unable to convert version string to tuple, skipping version check child config.packages.valgrind 0.352662 ============================================================================================= TESTING: consistencyChecks from config.packages.thrust(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.thrust(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.thrust 0.004561 ============================================================================================= TESTING: consistencyChecks from config.packages.cuda(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.cuda(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.cuda 0.003772 ============================================================================================= TESTING: consistencyChecks from config.packages.OpenMPI(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.OpenMPI(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.OpenMPI 0.003893 ============================================================================================= TESTING: consistencyChecks from config.packages.MPICH(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.MPICH(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.MPICH 0.005020 ============================================================================================= TESTING: consistencyChecks from config.packages.MPI(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.MPI(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:691) ================================================================================== Checking for a functional MPI Checking for library in Compiler specific search MPI: [] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library [] [] ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -ldl Checking for optional headers [] in Compiler specific search MPI: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in [] Found header files [] in [] Checking for headers ['mpi.h'] in Compiler specific search MPI: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['mpi.h'] in [] Checking include with compiler flags var CPPFLAGS [] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['mpi.h'] in [] Defined "HAVE_MPI_F90MODULE_VISIBILITY" to "1" ============================================================================================= TESTING: checkMPIDistro from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:544) Determine if MPICH_NUMVERSION, OMPI_MAJOR_VERSION or MSMPI_VER exist in mpi.h Used for consistency checking of MPI installation at compile time ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 2 stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.c", line 4: error: identifier "I_MPI_VERSION" is undefined const char *mpich_ver = I_MPI_VERSION; ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include const char *mpich_ver = I_MPI_VERSION; int main() { ; return 0; } ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 2 stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.c", line 4: error: identifier "I_MPI_NUMVERSION" is undefined int mpich_ver = I_MPI_NUMVERSION; ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = I_MPI_NUMVERSION; int main() { ; return 0; } ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 2 stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.c", line 4: error: identifier "MVAPICH2_NUMVERSION" is undefined int mpich_ver = MVAPICH2_NUMVERSION; ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MVAPICH2_NUMVERSION; int main() { ; return 0; } ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 2 stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.c", line 4: error: identifier "MPICH_NUMVERSION" is undefined int mpich_ver = MPICH_NUMVERSION; ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MPICH_NUMVERSION; int main() { ; return 0; } ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int ompi_major = OMPI_MAJOR_VERSION; int ompi_minor = OMPI_MINOR_VERSION; int ompi_release = OMPI_RELEASE_VERSION; int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include int ompi_major = OMPI_MAJOR_VERSION; int ompi_minor = OMPI_MINOR_VERSION; int ompi_release = OMPI_RELEASE_VERSION; Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.c Defined "HAVE_OMPI_MAJOR_VERSION" to "4" Defined "HAVE_OMPI_MINOR_VERSION" to "0" Defined "HAVE_OMPI_RELEASE_VERSION" to "1" ============================================================================================= TESTING: configureMPI2 from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:332) Check for functions added to the interface in MPI-2 ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int flag;if (MPI_Finalized(&flag)); ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.o -ldl Defined "HAVE_MPI_FINALIZED" to "1" ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Allreduce(MPI_IN_PLACE,0, 1, MPI_INT, MPI_SUM, MPI_COMM_SELF)); ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.o -ldl Defined "HAVE_MPI_IN_PLACE" to "1" ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int count=2; int blocklens[2]={0,1}; MPI_Aint indices[2]={0,1}; MPI_Datatype old_types[2]={MPI_INT,MPI_DOUBLE}; MPI_Datatype *newtype = 0; if (MPI_Type_create_struct(count, blocklens, indices, old_types, newtype)); ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.o -ldl ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm_errhandler_fn * p_err_fun = 0; MPI_Errhandler * p_errhandler = 0; if (MPI_Comm_create_errhandler(p_err_fun,p_errhandler)); ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.o -ldl ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_set_errhandler(MPI_COMM_WORLD,MPI_ERRORS_RETURN)); ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.o -ldl ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Reduce_local(0, 0, 0, MPI_INT, MPI_SUM));; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.o -ldl Defined "HAVE_MPI_REDUCE_LOCAL" to "1" ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { char version[MPI_MAX_LIBRARY_VERSION_STRING];int verlen;if (MPI_Get_library_version(version,&verlen)); ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.o -ldl Defined "HAVE_MPI_GET_LIBRARY_VERSION" to "1" ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int base[100]; MPI_Win win; if (MPI_Win_create(base,100,4,MPI_INFO_NULL,MPI_COMM_WORLD,&win)); ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.o -ldl Defined "HAVE_MPI_WIN_CREATE" to "1" ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.c", line 6: warning: variable "win" is used before its value is set int ptr[1]; MPI_Win win; if (MPI_Accumulate(ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_REPLACE,win)); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ptr[1]; MPI_Win win; if (MPI_Accumulate(ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_REPLACE,win)); ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.o -ldl Defined "HAVE_MPI_ONE_SIDED" to "1" ============================================================================================= TESTING: configureMPI3 from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:379) Check for functions added to the interface in MPI-3 ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm scomm; MPI_Aint size=128; int disp_unit=8,*baseptr; MPI_Win win; if (MPI_Comm_split_type(MPI_COMM_WORLD, MPI_COMM_TYPE_SHARED, 0, MPI_INFO_NULL, &scomm)); if (MPI_Win_allocate_shared(size,disp_unit,MPI_INFO_NULL,MPI_COMM_WORLD,&baseptr,&win)); if (MPI_Win_shared_query(win,0,&size,&disp_unit,&baseptr)); ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.o -ldl Defined "HAVE_MPI_PROCESS_SHARED_MEMORY" to "1" ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int send=0,recv,counts[2]={1,1},displs[2]={1,2}; MPI_Request req; if (MPI_Iscatter(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Iscatterv(&send,counts,displs,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Igather(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Igatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Iallgather(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); if (MPI_Iallgatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,MPI_COMM_WORLD,&req)); if (MPI_Ialltoall(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.o -ldl Defined "HAVE_MPI_NONBLOCKING_COLLECTIVES" to "1" ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm distcomm; MPI_Request req; if (MPI_Dist_graph_create_adjacent(MPI_COMM_WORLD,0,0,MPI_WEIGHTS_EMPTY,0,0,MPI_WEIGHTS_EMPTY,MPI_INFO_NULL,0,&distcomm)); if (MPI_Neighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm)); if (MPI_Ineighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm,&req)); ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.o -ldl Defined "HAVE_MPI_NEIGHBORHOOD_COLLECTIVES" to "1" ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 4 stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.c", line 7: catastrophic error: #error directive: This OpenMPI is not CUDA-aware #error This OpenMPI is not CUDA-aware ^ 1 catastrophic error detected in the compilation of "/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.c". Compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(MPIX_CUDA_AWARE_SUPPORT) && MPIX_CUDA_AWARE_SUPPORT #else #error This OpenMPI is not CUDA-aware #endif int main() { ; return 0; } ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.c", line 6: warning: variable "win" is used before its value is set int ptr[1]; MPI_Win win; if (MPI_Get_accumulate(ptr,1,MPI_INT,ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_SUM,win)); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ptr[1]; MPI_Win win; if (MPI_Get_accumulate(ptr,1,MPI_INT,ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_SUM,win)); ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.o -ldl Defined "HAVE_MPI_GET_ACCUMULATE" to "1" ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.c", line 6: warning: variable "win" is used before its value is set int ptr[1]; MPI_Win win; MPI_Request req; if (MPI_Rget(ptr,1,MPI_INT,0,1,1,MPI_INT,win,&req)); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ptr[1]; MPI_Win win; MPI_Request req; if (MPI_Rget(ptr,1,MPI_INT,0,1,1,MPI_INT,win,&req)); ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.o -ldl Defined "HAVE_MPI_RGET" to "1" ============================================================================================= TESTING: configureMPIEXEC from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:177) Checking for location of mpiexec Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/mpiexec...found Running Executable with threads to time it out at 60 Executing: mpiexec -help all stdout: mpiexec (Open MPI) FUJITSU MPI Library 4.0.0 7134d33ebb Usage: mpiexec [OPTION]... [PROGRAM]... Start the given program using Open RTE -app|--app Provide an appfile; ignore all other command line options -c|-np|--np Number of processes to run. -debuglib|--debuglib Link debug MPI library -fjdbg-dlock|--fjdbg-dlock Enable the deadlock investigative function in the debugging support functions. -fjdbg-out-dir|--fjdbg-out-dir Specify the directory to store the result file for the deadlock investigative function or abnormal termination investigative function in the debugging support functions. -fjdbg-sig|--fjdbg-sig Enable the abnormal termination investigative function in the debugging support functions. -gdbx|--gdbx Enable the debugging control function with command files in the debugging support functions. -h|--help Print help message and exit. -n|--n Number of processes to run. -of|--of Save the parallel process standard output and standard error output to the file with the filename . -of-proc|--of-proc Save the parallel process standard output and standard error output, separately for each process, to the file with the filename .rank. -oferr|--oferr Save the parallel process standard error output to the file with the filename . -oferr-proc|--oferr-proc Save the parallel process standard error output, separately for each process, to the file with the filename .rank. -ofout|--ofout Save the parallel process standard output to the file with the filename . -ofout-proc|--ofout-proc Save the parallel process standard output, separately for each process, to the file with the filename .rank. -ofprefix|--ofprefix Prefix the character string corresponding to the keyword specified at . -std|--std Save the parallel process standard output and standard error output to the file with the filename . -std-proc|--std-proc Save the parallel process standard output and standard error output, separately for each process, to the file with the filename .rank. -stderr|--stderr Save the parallel process standard error output to the file with the filename . -stderr-proc|--stderr-proc Save the parallel process standard error output, separately for each process, to the file with the filename .rank. -stdin|--stdin Read from the file with the filename specified at . -stdout|--stdout Save the parallel process standard output to the file with the filename . -stdout-proc|--stdout-proc Save the parallel process standard output, separately for each process, to the file with the filename .rank. -stdprefix|--stdprefix Prefix the character string corresponding to the keyword specified at . -V|--version Print version and exit -vcoordfile|--vcoordfile Provide a vcoordfile that specifies rank-coordinate mapping. -x Export an environment variable, optionally specifying a value. (e.g., "-x foo" exports the environment variable foo and takes its value from the current environment; "-x foo=bar" exports the environment variable name foo and sets its value to "bar" in the started processes) For additional mpirun arguments, run 'mpirun --help ' The following categories exist: general (Defaults to this option), debug, output, input, mapping, ranking, binding, devel (arguments useful to OMPI Developers), compatibility (arguments supported for backwards compatibility), launch (arguments to modify launch options), and dvm (Distributed Virtual Machine arguments). Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/mpiexec...found Defined make macro "MPIEXECEXECUTABLE" to "/opt/FJSVxtclanga/tcsds-1.2.31/bin/mpiexec" Running Executable with threads to time it out at 120 Executing: mpiexec -n 1 printenv stdout: OMPI_MCA_orte_ess_vpid=0 FLIB_RANK_ON_NODE=0 OMPI_PLE_RANK_ON_NODE=0 PLE_RANK_ON_NODE=0 FLIB_AFFINITY_ON_PROCESS=12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59 PMIX_RANK=0 PMIX_NAMESPACE=0x2a4b000c01560000@0000000000 PMIX_SERVER_URI2=s-6302082_0.3771;tcp4://127.0.0.1:44835 PMIX_SERVER_URI21=s-6302082_0.3771;tcp4://127.0.0.1:44835 PMIX_SERVER_URI=s-6302082_0:3771:/var/opt/FJSVtcs/ple/daemonif/6302082_0_1/pmix-3771 PMIX_SERVER_URI2USOCK=s-6302082_0:3771:/var/opt/FJSVtcs/ple/daemonif/6302082_0_1/pmix-3771 PMIX_SECURITY_MODE=native,none PMIX_PTL_MODULE=tcp,usock PMIX_BFROP_BUFFER_TYPE=PMIX_BFROP_BUFFER_FULLY_DESC PMIX_GDS_MODULE=ds12,hash PMIX_DSTORE_ESH_BASE_PATH=/var/opt/FJSVtcs/ple/daemonif/6302082_0_1/pmix_dstor_3771 OMPI_MCA_orte_ess_jobid=22413312 OMPI_MCA_orte_ess_num_procs=1 OMPI_PLE_TASKID=3047529624408293376 OMPI_UNIVERSE_SIZE=1 FLIB_NUM_PROCESS_ON_NODE=1 OMPI_PLE_MSWK_MODE=0 OMPI_NODE_SHARE=0 OMPI_PLE_SOCK_PATH=/var/opt/FJSVtcs/ple/cmdif/pled_0x2a4b000c01560000.socket PLE_SPAWN_NO=0 INITIAL_SEG_SIZE=0 NS_META_SEG_SIZE=0 NS_DATA_SEG_SIZE=131072 SM_USE_LINEAR_SEARCH=0 OMPI_CKPTCONFIG=0x00 OMPI_MCA_pmix=^s1,s2,cray,isolated PMIX_MCA_mca_base_component_show_load_errors=1 PJM_LLIO_LOCALTMP_SIZE=0 LS_COLORS=rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;05;37;41:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36: LD_LIBRARY_PATH=/opt/FJSVxtclanga/tcsds-1.2.31/lib64:/vol0001/apps/arm-lib/arm-linux-compiler-20.1_Generic-AArch64_RHEL-7_aarch64-linux/lib:/vol0001/apps/arm-lib/arm-linux-compiler-20.1_Generic-AArch64_RHEL-7_aarch64-linux/lib/clang/9.0.1/armpl_links/lib:/vol0001/apps/arm-lib/armpl-20.1.0_A64FX_RHEL-7_arm-linux-compiler_20.1_aarch64-linux/lib:/vol0001/apps/arm-lib/gcc-9.2.0_Generic-AArch64_RHEL-7_aarch64-linux/lib64 PJM_JOBNAME=STDIN PJM_MPI_PROC=1 PJM_RSCUNIT=rscunit_ft01 MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD _=/opt/FJSVxtclanga/tcsds-1.2.31/bin/mpiexec LANG=C PJM_O_MAIL=/var/spool/mail/a04199 HISTCONTROL=ignoredups PJM_PK_retention_state_max=0 HOSTNAME=i31-0201c PJM_ELAPSED_TIME_MODE=fixed PJM_O_LOGNAME=a04199 PATH_modshare=/opt/FJSVxtclanga/tcsds-1.2.31/bin:1:/usr/sbin:1:/usr/bin:1:/usr/local/sbin:1:/usr/share/Modules/bin:1:/usr/local/bin:1 PJM_NORESTART=1 LOADEDMODULES_modshare=lang/tcsds-1.2.31:1 PETSC_ARCH=arch-arm PJM_SUBJOBID=6302082 PJM_PK_eco_state_min=0 PJM_PK_issue_state_min=0 PJM_PK_retention_state_min=0 PJM_NODE_ALLOCATION_MODE=noncont PJM_STDOUT_PATH=/vol0004/ra010009/a04199/petsc/STDIN.6302082.out PJM_NODE_QUOTA_LIMIT=18446744073709551615 PJM_O_HOME=/home/ra010009/a04199 S_COLORS=auto PJM_LLIO_AUTO_READAHEAD=on PJM_PK_eco_state_max=2 LD_LIBRARY_PATH_modshare=/opt/FJSVxtclanga/tcsds-1.2.31/lib64:1 PJM_LLIO_STRIPE_COUNT=1 MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl PJM_PK_throttling_state_min=0 USER=a04199 PJM_NODE=1 PJM_PK_issue_state_max=1 PJM_JOBID=6302082 FJSVXTCLANGA=/opt/FJSVxtclanga/tcsds-1.2.31 PJM_O_SHELL=/bin/bash PJM_DPREFIX=#PJM PJM_STDERR_PATH=/vol0004/ra010009/a04199/petsc/STDIN.6302082.err PJM_NODE_MEM_LIMIT=18446744073709551615 PWD=/vol0004/ra010009/a04199/petsc LINES=122 HOME=/home/ra010009/a04199 MODULES_LMCONFLICT_modshare=lang/tcsds-1.2.31&lang:1 LC_CTYPE=C.UTF-8 PJM_ELAPSE_LIMIT=3600 PJM_PK_throttling_state_max=9 GIT_PS1_SHOWDIRTYSTATE=1 PLE_SCRIPT_TYPE=JOB_INTERACTIVE PJM_LLIO_ASYNC_CLOSE=on PJM_O_WORKDIR=/vol0004/ra010009/a04199/petsc PJM_LLIO_CN_CACHED_WRITE_SIZE=4194304 PJM_MAILOPTION=0x0 _LMFILES__modshare=/work/system/modulefiles/lang/tcsds-1.2.31:1 MODULES_LMALTNAME=lang/tcsds-1.2.31&lang/default&lang PJM_O_LANG=en_US.utf8 PJM_LOCALTMP=/local FJPNCKPT_CONFIG=0x00 PJM_RSCGRP=int PJM_PK_issue_state=0 PJM_O_PATH=/opt/FJSVxtclanga/tcsds-1.2.31/bin:/opt/local/openssh/bin:/usr/share/Modules/bin:/opt/local/openssh/bin:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/home/ra010009/a04199/.local/bin:/home/ra010009/a04199/bin TMPDIR=/home/ra010009/a04199 LOADEDMODULES=lang/tcsds-1.2.31 PJM_NET_ROUTE=static GIT_PS1_SHOWUPSTREAM=auto PJM_PK_freq_min=2000 PJM_O_HOST=fn01sv01 PJM_LLIO_CN_READ_CACHE=on COLUMNS=146 MAIL=/var/spool/mail/a04199 MODULES_LMCONFLICT=lang/tcsds-1.2.31&lang PJM_PK_eco_state=0 TERM=xterm PJM_CUSTOM_RESOURCES=test_rsc01=0,eco_state=0,eco_state_max=2,eco_state_min=0,ex_pipe_state=0,ex_pipe_state_max=1,ex_pipe_state_min=0,freq=2000,freq_max=2200,freq_min=2000,issue_state=0,issue_state_max=1,issue_state_min=0,jobenv=linux2,knob_io=SYSTEM,retention_state=0,retention_state_acores=0,retention_state_max=0,retention_state_min=0,throttling_state=0,throttling_state_max=9,throttling_state_min=0 PJM_SHAREDTMP=/share PJM_PK_freq_max=2200 PJM_LLIO_SHAREDTMP_SIZE=0 MODULES_LMALTNAME_modshare=lang/tcsds-1.2.31&lang/default&lang:1 FJSVXTCMPI=/opt/FJSVxtclanga/tcsds-1.2.31 PJM_NODE_ALLOCATION_IO_MODE=no-io-exclusive SHLVL=2 PJM_NODE_X=1 PJM_JOBDIR=/vol0004/ra010009/a04199/petsc MANPATH=: PJM_PK_ex_pipe_state=0 PJM_LLIO_SIO_READ_CACHE=off PJM_PK_freq=2000 MODULEPATH=/work/system/modulefiles PJM_NODE_CPUTIME_LIMIT=18446744073709551615 PJM_PK_ex_pipe_state_min=0 LOGNAME=a04199 PJM_ENVIRONMENT=INTERACT MODULEPATH_modshare=/work/system/modulefiles:1 PJM_PK_knob_io=SYSTEM PJM_LLIO_PERF=off PJM_SHELL=/bin/bash PJM_LLIO_CN_CACHE_SIZE=134217728 PATH=/opt/FJSVxtclanga/tcsds-1.2.31/bin:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/home/ra010009/a04199/.local/bin:/home/ra010009/a04199/bin PJM_LLIO_UNCOMPLETED_FILEINFO_PATH=/vol0004/ra010009/a04199/petsc/STDIN.6302082.err _LMFILES_=/work/system/modulefiles/lang/tcsds-1.2.31 PJM_LLIO_STRIPE_SIZE=2097152 MODULESHOME=/usr/share/Modules PETSC_DIR=/home/ra010009/a04199/petsc HISTSIZE=1000 PJM_PK_retention_state=0 PJM_PK_throttling_state=0 PJM_PROC_BY_NODE=1 PJM_PK_ex_pipe_state_max=1 LESSOPEN=||/usr/bin/lesspipe.sh %s PJM_MPI_SHAPE_X=1 BASH_FUNC_module%%=() { _module_raw "$@" 2>&1 } BASH_FUNC__module_raw%%=() { unset _mlshdbg; if [ "${MODULES_SILENT_SHELL_DEBUG:-0}" = '1' ]; then case "$-" in *v*x*) set +vx; _mlshdbg='vx' ;; *v*) set +v; _mlshdbg='v' ;; *x*) set +x; _mlshdbg='x' ;; *) _mlshdbg='' ;; esac; fi; unset _mlre _mlIFS; if [ -n "${IFS+x}" ]; then _mlIFS=$IFS; fi; IFS=' '; for _mlv in ${MODULES_RUN_QUARANTINE:-}; do if [ "${_mlv}" = "${_mlv##*[!A-Za-z0-9_]}" -a "${_mlv}" = "${_mlv#[0-9]}" ]; then if [ -n "`eval 'echo ${'$_mlv'+x}'`" ]; then _mlre="${_mlre:-}${_mlv}_modquar='`eval 'echo ${'$_mlv'}'`' "; fi; _mlrv="MODULES_RUNENV_${_mlv}"; _mlre="${_mlre:-}${_mlv}='`eval 'echo ${'$_mlrv':-}'`' "; fi; done; if [ -n "${_mlre:-}" ]; then eval `eval ${_mlre} /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl bash '"$@"'`; else eval `/usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl bash "$@"`; fi; _mlstatus=$?; if [ -n "${_mlIFS+x}" ]; then IFS=$_mlIFS; else unset IFS; fi; unset _mlre _mlv _mlrv _mlIFS; if [ -n "${_mlshdbg:-}" ]; then set -$_mlshdbg; fi; unset _mlshdbg; return $_mlstatus } BASH_FUNC_switchml%%=() { typeset swfound=1; if [ "${MODULES_USE_COMPAT_VERSION:-0}" = '1' ]; then typeset swname='main'; if [ -e /usr/share/Modules/libexec/modulecmd.tcl ]; then typeset swfound=0; unset MODULES_USE_COMPAT_VERSION; fi; else typeset swname='compatibility'; if [ -e /usr/share/Modules/libexec/modulecmd-compat ]; then typeset swfound=0; MODULES_USE_COMPAT_VERSION=1; export MODULES_USE_COMPAT_VERSION; fi; fi; if [ $swfound -eq 0 ]; then echo "Switching to Modules $swname version"; source /usr/share/Modules/init/bash; else echo "Cannot switch to Modules $swname version, command not found"; return 1; fi } BASH_FUNC_ml%%=() { module ml "$@" } IPATH_NO_BACKTRACE=1 HFI_NO_BACKTRACE=1 OMPI_MCA_plm=ple OMPI_MCA_ess=pmi OMPI_MCA_mpi_yield_when_idle=0 OMPI_MCA_plm_ple_cpu_affinity=1 OMPI_MCA_plm_ple_memory_allocation_policy= OMPI_MCA_plm_ple_numanode_assign_policy= OMPI_PLE_SPAWN_MAX=4294967295 Defined make macro "MPIEXEC" to "mpiexec" Checking for program /usr/libexec/ApplicationFirewall/socketfilterfw...not found Checking for program /home/ra010009/a04199/petsc/lib/petsc/bin/win32fe/socketfilterfw...not found Unable to find programs ['socketfilterfw'] providing listing of the specific search path Warning accessing /usr/libexec/ApplicationFirewall gives errors: must be str, not builtin_function_or_method Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/hostname...not found Checking for program /usr/share/Modules/bin/hostname...not found Checking for program /usr/local/bin/hostname...not found Checking for program /usr/bin/hostname...found Defined make macro "HOSTNAME" to "hostname" Running Executable with threads to time it out at 60 Executing: hostname stdout: i31-0201c Return code from hostname: 0 Hostname works, running network checks Checking for program /sbin/ping...found Defined make macro "PING" to "/sbin/ping" Executing: uname -s stdout: Linux Running Executable with threads to time it out at 60 Executing: /sbin/ping -c 2 i31-0201c Exception: while running ping skipping ping check Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/host...not found Checking for program /usr/share/Modules/bin/host...not found Checking for program /usr/local/bin/host...not found Checking for program /usr/bin/host...found Defined make macro "HOST" to "host" Running Executable with threads to time it out at 60 Executing: host i31-0201c stdout: Host i31-0201c not found: 3(NXDOMAIN) Exception: while running host skipping host check Checking for program /usr/sbin/traceroute...not found Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/traceroute...not found Checking for program /usr/share/Modules/bin/traceroute...not found Checking for program /usr/local/bin/traceroute...not found Checking for program /usr/bin/traceroute...not found Checking for program /usr/local/sbin/traceroute...not found Checking for program /usr/sbin/traceroute...not found Checking for program /home/ra010009/a04199/.local/bin/traceroute...not found Checking for program /home/ra010009/a04199/bin/traceroute...not found Checking for program /home/ra010009/a04199/petsc/lib/petsc/bin/win32fe/traceroute...not found Unable to find programs ['traceroute'] providing listing of the specific search path Warning accessing /usr/sbin gives errors: must be str, not builtin_function_or_method ============================================================================================= ***** WARNING: mpiexec may not work on your system due to network issues. Perhaps you have VPN running whose network settings may not work with mpiexec or your network is misconfigured ============================================================================================= ============================================================================================= ======== Checking running linked program ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Init(0,0); MPI_Finalize(); ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.o -ldl Testing executable /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest to see if it can be run Executing: mpiexec -n 1 /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest Running Executable with threads to time it out at 120 Executing: mpiexec -n 1 /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest ============================================================================================= TESTING: configureMPITypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:426) Checking for MPI Datatype handles ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_LONG_DOUBLE, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Defined "HAVE_MPI_LONG_DOUBLE" to "1" ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_INT64_T, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Defined "HAVE_MPI_INT64_T" to "1" ============================================================================================= TESTING: SGIMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:472) Returns true if SGI MPI is used Checking for functions [MPI_SGI_barrier] in library [] [] ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_SGI_barrier(); static void _check_MPI_SGI_barrier() { MPI_SGI_barrier(); } int main() { _check_MPI_SGI_barrier();; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -ldl Possible ERROR while running linker: exit code 1 stderr: /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o: In function `_check_MPI_SGI_barrier': /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.c:5: undefined reference to `MPI_SGI_barrier' SGI MPI test failure ============================================================================================= TESTING: CxxMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:482) Make sure C++ can compile and link Checking for header mpi.h Checking for C++ MPI_Finalize() Checking for functions [MPI_Finalize] in library [] [] ===== Checking linker Executing: mpiFCC -c -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -Kfast,openmp -fPIC /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.cc Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.cc", line 5: warning: variable "ierr" was set but never used static void _check_MPI_Finalize() { int ierr; ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_MPI_Finalize() { int ierr; ierr = MPI_Finalize();; } int main() { _check_MPI_Finalize();; return 0; } Executing: mpiFCC -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -ldl ============================================================================================= TESTING: FortranMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:498) Make sure fortran include [mpif.h] and library symbols are found Checking for fortran mpi_init() Checking for functions [] in library [] [] ===== Checking linker Executing: mpifrt -c -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -fPIC -O /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.F90 Successful compile: Source: program main #include "mpif.h" integer ierr call mpi_init(ierr) end Executing: mpifrt -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest -fPIC -O /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -ldl Checking for mpi.mod Checking for functions [] in library [] [] ===== Checking linker Executing: mpifrt -c -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -fPIC -O /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.F90 Successful compile: Source: program main use mpi integer(kind=selected_int_kind(5)) ierr,rank call mpi_init(ierr) call mpi_comm_rank(MPI_COMM_WORLD,rank,ierr) end Executing: mpifrt -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest -fPIC -O /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -ldl Defined "HAVE_MPI_F90MODULE" to "1" ============================================================================================= TESTING: configureIO from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:520) Check for the functions in MPI/IO - Define HAVE_MPIIO if they are present - Some older MPI 1 implementations are missing these ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.c", line 12: warning: variable "fh" is used before its value is set if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); ^ "/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.c", line 12: warning: variable "buf" is used before its value is set if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); ^ "/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.c", line 18: warning: variable "disp" is used before its value is set if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); ^ "/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.c", line 18: warning: variable "info" is used before its value is set if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Aint lb, extent; if (MPI_Type_get_extent(MPI_INT, &lb, &extent)); MPI_File fh; void *buf; MPI_Status status; if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)); MPI_Offset disp; MPI_Info info; if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); if (MPI_File_open(MPI_COMM_SELF, "", 0, info, &fh)); if (MPI_File_close(&fh)); ; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.o -ldl Defined "HAVE_MPIIO" to "1" ============================================================================================= TESTING: findMPIInc from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:624) Find MPI include paths from "mpicc -show" and use with CUDAC_FLAGS ============================================================================================= TESTING: PetscArchMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:666) Checking for functions [MPI_Type_get_envelope MPI_Type_dup MPI_Init_thread MPI_Iallreduce MPI_Ibarrier MPI_Finalized MPI_Exscan MPI_Reduce_scatter MPI_Reduce_scatter_block] in library [] [] ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Type_get_envelope(); static void _check_MPI_Type_get_envelope() { MPI_Type_get_envelope(); } char MPI_Type_dup(); static void _check_MPI_Type_dup() { MPI_Type_dup(); } char MPI_Init_thread(); static void _check_MPI_Init_thread() { MPI_Init_thread(); } char MPI_Iallreduce(); static void _check_MPI_Iallreduce() { MPI_Iallreduce(); } char MPI_Ibarrier(); static void _check_MPI_Ibarrier() { MPI_Ibarrier(); } char MPI_Finalized(); static void _check_MPI_Finalized() { MPI_Finalized(); } char MPI_Exscan(); static void _check_MPI_Exscan() { MPI_Exscan(); } char MPI_Reduce_scatter(); static void _check_MPI_Reduce_scatter() { MPI_Reduce_scatter(); } char MPI_Reduce_scatter_block(); static void _check_MPI_Reduce_scatter_block() { MPI_Reduce_scatter_block(); } int main() { _check_MPI_Type_get_envelope(); _check_MPI_Type_dup(); _check_MPI_Init_thread(); _check_MPI_Iallreduce(); _check_MPI_Ibarrier(); _check_MPI_Finalized(); _check_MPI_Exscan(); _check_MPI_Reduce_scatter(); _check_MPI_Reduce_scatter_block();; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -ldl Defined "HAVE_MPI_TYPE_GET_ENVELOPE" to "1" Defined "HAVE_MPI_TYPE_DUP" to "1" Defined "HAVE_MPI_INIT_THREAD" to "1" Defined "HAVE_MPI_IALLREDUCE" to "1" Defined "HAVE_MPI_IBARRIER" to "1" Defined "HAVE_MPI_FINALIZED" to "1" Defined "HAVE_MPI_EXSCAN" to "1" Defined "HAVE_MPI_REDUCE_SCATTER" to "1" Defined "HAVE_MPI_REDUCE_SCATTER_BLOCK" to "1" Checking for functions [MPIX_Iallreduce] in library [] [] ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIX_Iallreduce(); static void _check_MPIX_Iallreduce() { MPIX_Iallreduce(); } int main() { _check_MPIX_Iallreduce();; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -ldl Possible ERROR while running linker: exit code 1 stderr: /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o: In function `_check_MPIX_Iallreduce': /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.c:5: undefined reference to `MPIX_Iallreduce' Checking for functions [MPIX_Ibarrier] in library [] [] ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIX_Ibarrier(); static void _check_MPIX_Ibarrier() { MPIX_Ibarrier(); } int main() { _check_MPIX_Ibarrier();; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -ldl Possible ERROR while running linker: exit code 1 stderr: /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o: In function `_check_MPIX_Ibarrier': /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.c:5: undefined reference to `MPIX_Ibarrier' ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.c", line 6: warning: variable "combiner" was declared but never referenced int combiner = MPI_COMBINER_DUP;; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_DUP;; return 0; } Defined "HAVE_MPI_COMBINER_DUP" to "1" ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.c", line 6: warning: variable "combiner" was declared but never referenced int combiner = MPI_COMBINER_CONTIGUOUS;; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_CONTIGUOUS;; return 0; } Defined "HAVE_MPI_COMBINER_CONTIGUOUS" to "1" ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.c", line 6: warning: variable "combiner" was declared but never referenced int combiner = MPI_COMBINER_NAMED;; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_NAMED;; return 0; } Defined "HAVE_MPI_COMBINER_NAMED" to "1" ============================================================================================= TESTING: checkVersion from config.packages.MPI(config/BuildSystem/config/package.py:1026) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "mpi.h" ;petscpkgver(MPI_VERSION); Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI /home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI/conftest.c For mpi need 2 <= 3 <= ============================================================================================= TESTING: checkSharedLibrary from config.packages.MPI(config/BuildSystem/config/package.py:955) By default we don't care about checking if the library is shared child config.packages.MPI 19.923125 ============================================================================================= TESTING: consistencyChecks from config.packages.zstd(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.zstd(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.zstd 0.004395 ============================================================================================= TESTING: consistencyChecks from config.packages.yaml(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.yaml(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.yaml 0.004084 ============================================================================================= TESTING: consistencyChecks from config.packages.sycl(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.sycl(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.sycl 0.003660 ============================================================================================= TESTING: consistencyChecks from config.packages.ssl(config/BuildSystem/config/packages/ssl.py:31) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ssl(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.ssl 0.005775 ============================================================================================= TESTING: consistencyChecks from config.packages.sprng(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.sprng(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.sprng 0.004079 PETSc clone, checking for Sowing Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/pdflatex...not found Checking for program /usr/share/Modules/bin/pdflatex...not found Checking for program /usr/local/bin/pdflatex...not found Checking for program /usr/bin/pdflatex...not found Checking for program /usr/local/sbin/pdflatex...not found Checking for program /usr/sbin/pdflatex...not found Checking for program /home/ra010009/a04199/.local/bin/pdflatex...not found Checking for program /home/ra010009/a04199/bin/pdflatex...not found Checking for program /home/ra010009/a04199/petsc/lib/petsc/bin/win32fe/pdflatex...not found Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/bfort...not found Checking for program /usr/share/Modules/bin/bfort...not found Checking for program /usr/local/bin/bfort...not found Checking for program /usr/bin/bfort...not found Checking for program /usr/local/sbin/bfort...not found Checking for program /usr/sbin/bfort...not found Checking for program /home/ra010009/a04199/.local/bin/bfort...not found Checking for program /home/ra010009/a04199/bin/bfort...not found Checking for program /home/ra010009/a04199/petsc/lib/petsc/bin/win32fe/bfort...not found Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/doctext...not found Checking for program /usr/share/Modules/bin/doctext...not found Checking for program /usr/local/bin/doctext...not found Checking for program /usr/bin/doctext...not found Checking for program /usr/local/sbin/doctext...not found Checking for program /usr/sbin/doctext...not found Checking for program /home/ra010009/a04199/.local/bin/doctext...not found Checking for program /home/ra010009/a04199/bin/doctext...not found Checking for program /home/ra010009/a04199/petsc/lib/petsc/bin/win32fe/doctext...not found Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/mapnames...not found Checking for program /usr/share/Modules/bin/mapnames...not found Checking for program /usr/local/bin/mapnames...not found Checking for program /usr/bin/mapnames...not found Checking for program /usr/local/sbin/mapnames...not found Checking for program /usr/sbin/mapnames...not found Checking for program /home/ra010009/a04199/.local/bin/mapnames...not found Checking for program /home/ra010009/a04199/bin/mapnames...not found Checking for program /home/ra010009/a04199/petsc/lib/petsc/bin/win32fe/mapnames...not found Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/bib2html...not found Checking for program /usr/share/Modules/bin/bib2html...not found Checking for program /usr/local/bin/bib2html...not found Checking for program /usr/bin/bib2html...not found Checking for program /usr/local/sbin/bib2html...not found Checking for program /usr/sbin/bib2html...not found Checking for program /home/ra010009/a04199/.local/bin/bib2html...not found Checking for program /home/ra010009/a04199/bin/bib2html...not found Checking for program /home/ra010009/a04199/petsc/lib/petsc/bin/win32fe/bib2html...not found Bfort not found. Installing sowing for FortranStubs ============================================================================================= TESTING: consistencyChecks from config.packages.sowing(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.sowing(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.sowing(config/BuildSystem/config/package.py:897) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional sowing Looking for SOWING at git.sowing, hg.sowing or a directory starting with ['petsc-pkg-sowing'] Found a copy of SOWING in git.sowing Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Executing: ['git', 'cat-file', '-e', 'v1.1.26-p1^{commit}'] Executing: ['git', 'rev-parse', 'v1.1.26-p1'] stdout: 674d5f3c1bf3ce6e1d744818915a0d723ce4dbe0 Executing: ['git', '-c', 'user.name=petsc-configure', '-c', 'user.email=petsc@configure', 'stash'] stdout: No local changes to save Executing: ['git', 'clean', '-f', '-d', '-x'] stdout: Removing pkg.gitcommit Removing sowing.petscconf Executing: ['git', 'checkout', '-f', '674d5f3c1bf3ce6e1d744818915a0d723ce4dbe0'] Makefile /home/ra010009/a04199/petsc/arch-arm/lib/petsc/conf/pkg.conf.sowing has correct checksum Commit file /home/ra010009/a04199/petsc/arch-arm/lib/petsc/conf/pkg.gitcommit.sowing has correct checksum Do not need to rebuild SOWING Not checking for library in Download SOWING: [] because no functions given to check for ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for optional headers [] in Download SOWING: ['/home/ra010009/a04199/petsc/arch-arm/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/home/ra010009/a04199/petsc/arch-arm/include'] Found header files [] in ['/home/ra010009/a04199/petsc/arch-arm/include'] Checking for headers [] in Download SOWING: ['/home/ra010009/a04199/petsc/arch-arm/include'] ============================================================================================= TESTING: checkVersion from config.packages.sowing(config/BuildSystem/config/package.py:1026) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version For sowing unable to find version information since includes and version includes are missing skipping version check ============================================================================================= TESTING: checkSharedLibrary from config.packages.sowing(config/BuildSystem/config/package.py:955) By default we don't care about checking if the library is shared Checking for program /home/ra010009/a04199/petsc/arch-arm/bin/bfort...found Defined make macro "BFORT" to "/home/ra010009/a04199/petsc/arch-arm/bin/bfort" Checking for program /home/ra010009/a04199/petsc/arch-arm/bin/doctext...found Defined make macro "DOCTEXT" to "/home/ra010009/a04199/petsc/arch-arm/bin/doctext" Checking for program /home/ra010009/a04199/petsc/arch-arm/bin/mapnames...found Defined make macro "MAPNAMES" to "/home/ra010009/a04199/petsc/arch-arm/bin/mapnames" Checking for program /home/ra010009/a04199/petsc/arch-arm/bin/bib2html...found Defined make macro "BIB2HTML" to "/home/ra010009/a04199/petsc/arch-arm/bin/bib2html" Executing: /home/ra010009/a04199/petsc/arch-arm/bin/bfort -version stdout: bfort (sowing) release 1.1.26 of Date unknown Running /home/ra010009/a04199/petsc/arch-arm/bin/bfort to generate fortran stubs child config.packages.sowing 62.379135 ============================================================================================= TESTING: consistencyChecks from config.packages.revolve(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.revolve(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.revolve 0.005310 ============================================================================================= TESTING: consistencyChecks from config.packages.radau5(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.radau5(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.radau5 0.004212 ============================================================================================= TESTING: consistencyChecks from config.packages.pami(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.pami(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.pami 0.003753 ============================================================================================= TESTING: consistencyChecks from config.packages.opengles(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.opengles(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.opengles 0.003744 ============================================================================================= TESTING: consistencyChecks from config.packages.opencl(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.opencl(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.opencl 0.003753 ============================================================================================= TESTING: consistencyChecks from config.packages.muparser(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.muparser(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.muparser 0.004200 ============================================================================================= TESTING: consistencyChecks from config.packages.mpe(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mpe(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.mpe 0.004195 ============================================================================================= TESTING: consistencyChecks from config.packages.memkind(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.memkind(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.memkind 0.003749 ============================================================================================= TESTING: consistencyChecks from config.packages.libmesh(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.libmesh(config/BuildSystem/config/packages/libmesh.py:76) Defined make rule "libmesh-build" with dependencies "" and code [] Defined make rule "libmesh-install" with dependencies "" and code [] child config.packages.libmesh 0.023508 ============================================================================================= TESTING: consistencyChecks from config.packages.moose(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.moose(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.moose 0.003851 ============================================================================================= TESTING: consistencyChecks from config.packages.libjpeg(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.libjpeg(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.libjpeg 0.004165 Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/lgrind...not found Checking for program /usr/share/Modules/bin/lgrind...not found Checking for program /usr/local/bin/lgrind...not found Checking for program /usr/bin/lgrind...not found Checking for program /usr/local/sbin/lgrind...not found Checking for program /usr/sbin/lgrind...not found Checking for program /home/ra010009/a04199/.local/bin/lgrind...not found Checking for program /home/ra010009/a04199/bin/lgrind...not found Checking for program /home/ra010009/a04199/petsc/lib/petsc/bin/win32fe/lgrind...not found child config.packages.lgrind 0.006575 ============================================================================================= TESTING: consistencyChecks from config.packages.hip(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.hip(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.hip 0.003754 child config.packages.gmsh 0.000486 ============================================================================================= TESTING: consistencyChecks from config.packages.gmp(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.gmp(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.gmp 0.004193 ============================================================================================= TESTING: consistencyChecks from config.packages.mpfr(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mpfr(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.mpfr 0.004171 ============================================================================================= TESTING: consistencyChecks from config.packages.giflib(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.giflib(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.giflib 0.004211 ============================================================================================= TESTING: consistencyChecks from config.packages.cub(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.cub(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.cub 0.004166 ============================================================================================= TESTING: consistencyChecks from config.packages.ctetgen(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ctetgen(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.ctetgen 0.004175 ============================================================================================= TESTING: consistencyChecks from config.packages.concurrencykit(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.concurrencykit(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.concurrencykit 0.004164 ============================================================================================= TESTING: locateC2html from config.packages.c2html(config/BuildSystem/config/packages/c2html.py:30) Looking for default C2html executable Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/c2html...not found Checking for program /usr/share/Modules/bin/c2html...not found Checking for program /usr/local/bin/c2html...not found Checking for program /usr/bin/c2html...not found Checking for program /usr/local/sbin/c2html...not found Checking for program /usr/sbin/c2html...not found Checking for program /home/ra010009/a04199/.local/bin/c2html...not found Checking for program /home/ra010009/a04199/bin/c2html...not found Checking for program /home/ra010009/a04199/petsc/lib/petsc/bin/win32fe/c2html...not found child config.packages.c2html 0.018745 ============================================================================================= TESTING: consistencyChecks from config.packages.boost(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.boost(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.boost 0.004176 ============================================================================================= TESTING: consistencyChecks from config.packages.silo(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.silo(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.silo 0.004205 ============================================================================================= TESTING: consistencyChecks from config.packages.Random123(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Random123(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.Random123 0.004181 ============================================================================================= TESTING: consistencyChecks from config.packages.PARTY(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.PARTY(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.PARTY 0.004163 ============================================================================================= TESTING: consistencyChecks from config.packages.NVSHMEM(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.NVSHMEM(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.NVSHMEM 0.003731 ============================================================================================= TESTING: consistencyChecks from config.packages.Matlab(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Matlab(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.Matlab 0.003460 ============================================================================================= TESTING: consistencyChecks from config.packages.MatlabEngine(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.MatlabEngine(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.MatlabEngine 0.003733 ============================================================================================= TESTING: consistencyChecks from config.packages.Mathematica(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Mathematica(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.Mathematica 0.003729 ============================================================================================= TESTING: consistencyChecks from config.packages.regex(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.regex(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.regex(config/BuildSystem/config/package.py:897) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional regex Checking for library in Compiler specific search REGEX: [] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [regexec regcomp regfree] in library [] [] ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char regexec(); static void _check_regexec() { regexec(); } char regcomp(); static void _check_regcomp() { regcomp(); } char regfree(); static void _check_regfree() { regfree(); } int main() { _check_regexec(); _check_regcomp(); _check_regfree();; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -ldl Checking for optional headers [] in Compiler specific search REGEX: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in [] Found header files [] in [] Checking for headers ['regex.h'] in Compiler specific search REGEX: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['regex.h'] in [] Checking include with compiler flags var CPPFLAGS [] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['regex.h'] in [] ============================================================================================= TESTING: checkVersion from config.packages.regex(config/BuildSystem/config/package.py:1026) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.regex(config/BuildSystem/config/package.py:955) By default we don't care about checking if the library is shared child config.packages.regex 0.523859 ============================================================================================= TESTING: consistencyChecks from config.packages.libceed(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.libceed(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.libceed 0.004497 Defined "PYTHON_EXE" to ""/usr/bin/python3"" Executing: /usr/bin/python3 -c "import Cython" Executing: /usr/bin/python3 -c "import numpy" child config.packages.python 0.377282 ============================================================================================= TESTING: consistencyChecks from config.packages.petsc4py(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.petsc4py(config/BuildSystem/config/packages/petsc4py.py:125) Defined make rule "petsc4py-build" with dependencies "" and code [] Defined make rule "petsc4py-install" with dependencies "" and code [] Defined make rule "petsc4pytest" with dependencies "" and code [] child config.packages.petsc4py 0.008156 ============================================================================================= TESTING: consistencyChecks from config.packages.mpi4py(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mpi4py(config/BuildSystem/config/packages/mpi4py.py:79) Defined make rule "mpi4py-build" with dependencies "" and code [] Defined make rule "mpi4py-install" with dependencies "" and code [] child config.packages.mpi4py 0.017885 ============================================================================================= TESTING: consistencyChecks from config.packages.slepc(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.slepc(config/BuildSystem/config/packages/slepc.py:97) Defined make rule "slepc-build" with dependencies "" and code [] Defined make rule "slepc-install" with dependencies "" and code [] child config.packages.slepc 0.016935 ============================================================================================= TESTING: consistencyChecks from config.packages.opengl(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.opengl(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.opengl 0.003774 ============================================================================================= TESTING: consistencyChecks from config.packages.glut(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.glut(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.glut 0.003748 ============================================================================================= TESTING: consistencyChecks from config.packages.GLVis(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.GLVis(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.GLVis 0.004199 ============================================================================================= TESTING: consistencyChecks from config.packages.CoDiPack(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.CoDiPack(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.CoDiPack 0.004194 ============================================================================================= TESTING: consistencyChecks from config.packages.adblaslapack(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.adblaslapack(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.adblaslapack 0.004194 child config.packages.cxxlibs 0.000022 Building CMake Executing: uname -s stdout: Linux ============================================================================================= TESTING: consistencyChecks from config.packages.cmake(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.cmake(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.cmake(config/BuildSystem/config/package.py:897) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional cmake Looking for CMAKE at git.cmake, hg.cmake or a directory starting with ['cmake'] Found a copy of CMAKE in cmake-3.20.1 CMAKE build - adding MAKE location to PATH: /usr/bin Makefile /home/ra010009/a04199/petsc/arch-arm/lib/petsc/conf/pkg.conf.cmake has correct checksum Do not need to rebuild CMAKE Not checking for library in Download CMAKE: [] because no functions given to check for ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for optional headers [] in Download CMAKE: ['/home/ra010009/a04199/petsc/arch-arm/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/home/ra010009/a04199/petsc/arch-arm/include'] Found header files [] in ['/home/ra010009/a04199/petsc/arch-arm/include'] Checking for headers [] in Download CMAKE: ['/home/ra010009/a04199/petsc/arch-arm/include'] ============================================================================================= TESTING: checkVersion from config.packages.cmake(config/BuildSystem/config/package.py:1026) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.cmake(config/BuildSystem/config/package.py:955) By default we don't care about checking if the library is shared Looking for Cmake in /home/ra010009/a04199/petsc/arch-arm/bin Checking for program /home/ra010009/a04199/petsc/arch-arm/bin/cmake...found Defined make macro "CMAKE" to "/home/ra010009/a04199/petsc/arch-arm/bin/cmake" Checking for program /home/ra010009/a04199/petsc/arch-arm/bin/ctest...found Defined make macro "CTEST" to "/home/ra010009/a04199/petsc/arch-arm/bin/ctest" Executing: /home/ra010009/a04199/petsc/arch-arm/bin/cmake --version stdout: cmake version 3.20.1 CMake suite maintained and supported by Kitware (kitware.com/cmake). cmake version found 3.20.1 child config.packages.cmake 0.401456 ============================================================================================= TESTING: consistencyChecks from config.packages.unittestcpp(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.unittestcpp(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.unittestcpp 0.004584 ============================================================================================= TESTING: consistencyChecks from config.packages.googletest(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.googletest(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.googletest 0.004202 ============================================================================================= TESTING: consistencyChecks from config.packages.eigen(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.eigen(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.eigen 0.004178 ============================================================================================= TESTING: consistencyChecks from config.packages.szlib(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.szlib(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.szlib 0.004184 ============================================================================================= TESTING: consistencyChecks from config.packages.zlib(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.zlib(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.zlib(config/BuildSystem/config/package.py:897) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional zlib Looking for ZLIB at git.zlib, hg.zlib or a directory starting with ['zlib'] Found a copy of ZLIB in zlib-1.2.11 Makefile /home/ra010009/a04199/petsc/arch-arm/lib/petsc/conf/pkg.conf.zlib has correct checksum Do not need to rebuild ZLIB Checking for library in Download ZLIB: ['/home/ra010009/a04199/petsc/arch-arm/lib/libz.a'] Contents: ['lib', 'share', 'etc', 'include', 'externalpackages', 'bin', 'doc'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [compress uncompress] in library ['/home/ra010009/a04199/petsc/arch-arm/lib/libz.a'] [] ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char compress(); static void _check_compress() { compress(); } char uncompress(); static void _check_uncompress() { uncompress(); } int main() { _check_compress(); _check_uncompress();; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -Wl,-rpath,/home/ra010009/a04199/petsc/arch-arm/lib -L/home/ra010009/a04199/petsc/arch-arm/lib -lz -ldl Defined "HAVE_LIBZ" to "1" Checking for optional headers [] in Download ZLIB: ['/home/ra010009/a04199/petsc/arch-arm/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/home/ra010009/a04199/petsc/arch-arm/include'] Found header files [] in ['/home/ra010009/a04199/petsc/arch-arm/include'] Checking for headers ['zlib.h'] in Download ZLIB: ['/home/ra010009/a04199/petsc/arch-arm/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['zlib.h'] in ['/home/ra010009/a04199/petsc/arch-arm/include'] Checking include with compiler flags var CPPFLAGS ['/home/ra010009/a04199/petsc/arch-arm/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI -I/home/ra010009/a04199/petsc/arch-arm/include /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['zlib.h'] in ['/home/ra010009/a04199/petsc/arch-arm/include'] ============================================================================================= TESTING: checkVersion from config.packages.zlib(config/BuildSystem/config/package.py:1026) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "zlib.h" ;petscpkgver(ZLIB_VERSION); Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.zlib -I/home/ra010009/a04199/petsc/arch-arm/include /home/ra010009/a04199/petsc-rz04nngc/config.packages.zlib/conftest.c For zlib need <= 1.2.11 <= ============================================================================================= TESTING: checkSharedLibrary from config.packages.zlib(config/BuildSystem/config/package.py:955) By default we don't care about checking if the library is shared child config.packages.zlib 0.818493 child config.packages.mathlib 0.000029 ============================================================================================= TESTING: consistencyChecks from config.packages.tetgen(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.tetgen(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.tetgen 0.004465 ============================================================================================= TESTING: consistencyChecks from config.packages.tchem(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.tchem(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.tchem 0.004218 ============================================================================================= TESTING: consistencyChecks from config.packages.saws(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.saws(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.saws 0.004184 ============================================================================================= TESTING: consistencyChecks from config.packages.libpng(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.libpng(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.libpng 0.004181 ============================================================================================= TESTING: consistencyChecks from config.packages.combblas(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.combblas(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.combblas 0.004190 ============================================================================================= TESTING: consistencyChecks from config.packages.Triangle(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Triangle(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.Triangle 0.004173 ============================================================================================= TESTING: consistencyChecks from config.packages.metis(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.metis(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.metis 0.004184 ============================================================================================= TESTING: consistencyChecks from config.packages.pragmatic(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.pragmatic(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.pragmatic 0.004186 ============================================================================================= TESTING: consistencyChecks from config.packages.parmetis(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.parmetis(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.parmetis 0.004182 ============================================================================================= TESTING: consistencyChecks from config.packages.Chaco(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Chaco(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.Chaco 0.004192 Executing: uname -s stdout: Linux ============================================================================================= TESTING: consistencyChecks from config.packages.hdf5(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.hdf5(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.hdf5 0.014874 ============================================================================================= TESTING: consistencyChecks from config.packages.med(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.med(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.med 0.004200 ============================================================================================= TESTING: consistencyChecks from config.packages.cgns(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.cgns(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.cgns 0.003748 ============================================================================================= TESTING: consistencyChecks from config.packages.ascem-io(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ascem-io(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.ascem-io 0.004219 ============================================================================================= TESTING: consistencyChecks from config.packages.pflotran(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.pflotran(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.pflotran 0.004179 ============================================================================================= TESTING: consistencyChecks from config.packages.alquimia(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.alquimia(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.alquimia 0.004180 ============================================================================================= TESTING: consistencyChecks from config.packages.SAMRAI(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.SAMRAI(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.SAMRAI 0.004194 child config.packages.flibs 0.000027 ============================================================================================= TESTING: consistencyChecks from config.packages.pnetcdf(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.pnetcdf(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.pnetcdf 0.004192 ============================================================================================= TESTING: consistencyChecks from config.packages.netcdf(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.netcdf(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.netcdf 0.004184 ============================================================================================= TESTING: consistencyChecks from config.packages.exodusii(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.exodusii(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.exodusii 0.004182 ============================================================================================= TESTING: consistencyChecks from config.packages.fblaslapack(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.fblaslapack(config/BuildSystem/config/packages/fblaslapack.py:27) The Apple Accelerate library uses threads that valgrind cannot handle Executing: uname -s stdout: Linux child config.packages.fblaslapack 0.013715 ============================================================================================= TESTING: consistencyChecks from config.packages.pthread(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.pthread(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.pthread(config/BuildSystem/config/packages/pthread.py:20) Checks for pthread_barrier_t, cpu_set_t, and sys/sysctl.h ================================================================================== Checking for a functional pthread Checking for library in Compiler specific search PTHREAD: [] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [pthread_create] in library [] [] ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char pthread_create(); static void _check_pthread_create() { pthread_create(); } int main() { _check_pthread_create();; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -ldl Checking for optional headers [] in Compiler specific search PTHREAD: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in [] Found header files [] in [] Checking for headers ['pthread.h'] in Compiler specific search PTHREAD: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['pthread.h'] in [] Checking include with compiler flags var CPPFLAGS [] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.zlib -I/home/ra010009/a04199/petsc-rz04nngc/config.headers /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['pthread.h'] in [] ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.packages.pthread/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.pthread -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.packages.pthread/conftest.c Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.packages.pthread/conftest.c", line 6: warning: variable "a" was declared but never referenced pthread_barrier_t *a; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { pthread_barrier_t *a; ; return 0; } Defined "HAVE_PTHREAD_BARRIER_T" to "1" ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.packages.pthread/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.pthread -fPIC -Kfast,openmp /home/ra010009/a04199/petsc-rz04nngc/config.packages.pthread/conftest.c Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.packages.pthread/conftest.c", line 6: warning: variable "a" was declared but never referenced cpu_set_t *a; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { cpu_set_t *a; ; return 0; } Defined "HAVE_SCHED_CPU_SET_T" to "1" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.zlib -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.pthread /home/ra010009/a04199/petsc-rz04nngc/config.packages.pthread/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_SYSCTL_H" to "1" ============================================================================================= TESTING: checkVersion from config.packages.pthread(config/BuildSystem/config/package.py:1026) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.pthread(config/BuildSystem/config/package.py:955) By default we don't care about checking if the library is shared child config.packages.pthread 0.972157 ============================================================================================= TESTING: consistencyChecks from config.packages.egads(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.egads(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.egads 0.004502 ============================================================================================= TESTING: consistencyChecks from config.packages.PTScotch(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.PTScotch(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.PTScotch 0.004223 ============================================================================================= TESTING: consistencyChecks from config.packages.mmg(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mmg(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.mmg 0.004197 ============================================================================================= TESTING: consistencyChecks from config.packages.parmmg(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.parmmg(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.parmmg 0.004196 ============================================================================================= TESTING: consistencyChecks from config.packages.Zoltan(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Zoltan(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.Zoltan 0.004189 ============================================================================================= TESTING: consistencyChecks from config.packages.ADIOS(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ADIOS(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.ADIOS 0.004191 ============================================================================================= TESTING: consistencyChecks from config.packages.openmp(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.openmp(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.openmp(config/BuildSystem/config/packages/openmp.py:20) Checks for OpenMP compiler flags Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.pthread -fPIC -Kfast,openmp -fopenmp /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -Kfast,openmp -fopenmp Preprocessing source: #include "confdefs.h" #include "conffix.h" #if defined(_OPENMP) opmv=_OPENMP #else #error "No _OPENMP macro, something is wrong with the OpenMP install" #endif Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.zlib -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.pthread -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.openmp -fopenmp /home/ra010009/a04199/petsc-rz04nngc/config.packages.openmp/conftest.c Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.pthread -fPIC -Kfast,openmp -fopenmp /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -Kfast,openmp -fopenmp Added C compiler flag -fopenmp Executing: mpifrt -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -fPIC -O -fopenmp /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.F90 Successful compile: Source: program main end Output from compiling with -fPIC -O -fopenmp Preprocessing source: #include "confdefs.h" #include "conffix.h" #if !defined(_OPENMP) #error "No _OPENMP macro, something is wrong with the OpenMP install" #endif Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.zlib -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.pthread -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.openmp -fopenmp /home/ra010009/a04199/petsc-rz04nngc/config.packages.openmp/conftest.c Executing: mpifrt -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -fPIC -O -fopenmp /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.F90 Successful compile: Source: program main end Output from compiling with -fPIC -O -fopenmp Added FC compiler flag -fopenmp Executing: mpiFCC -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -Kfast,openmp -fopenmp -fPIC /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Kfast,openmp -fopenmp Preprocessing source: #include "confdefs.h" #include "conffix.h" #if !defined(_OPENMP) #error "No _OPENMP macro, something is wrong with the OpenMP install" #endif Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.zlib -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.pthread -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.openmp -fopenmp /home/ra010009/a04199/petsc-rz04nngc/config.packages.openmp/conftest.c Executing: mpiFCC -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -Kfast,openmp -fopenmp -fPIC /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -Kfast,openmp -fopenmp Added Cxx compiler flag -fopenmp ================================================================================== Checking for a functional openmp Not checking for library in Compiler specific search OPENMP: [] because no functions given to check for ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for optional headers [] in Compiler specific search OPENMP: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in [] Found header files [] in [] Checking for headers ['omp.h'] in Compiler specific search OPENMP: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['omp.h'] in [] Checking include with compiler flags var CPPFLAGS [] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.zlib -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.pthread -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.openmp /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['omp.h'] in [] ============================================================================================= TESTING: checkVersion from config.packages.openmp(config/BuildSystem/config/package.py:1026) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.openmp(config/BuildSystem/config/package.py:955) By default we don't care about checking if the library is shared child config.packages.openmp 1.099733 ============================================================================================= TESTING: consistencyChecks from config.packages.viennacl(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.viennacl(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.viennacl 0.004485 ============================================================================================= TESTING: consistencyChecks from config.packages.ColPack(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ColPack(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.ColPack 0.004186 ============================================================================================= TESTING: consistencyChecks from config.packages.ADOLC(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ADOLC(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.ADOLC 0.004187 ============================================================================================= TESTING: consistencyChecks from config.packages.openblas(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.openblas(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.openblas 0.004192 ============================================================================================= TESTING: consistencyChecks from config.packages.blis(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.blis(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.blis 0.004190 ============================================================================================= TESTING: consistencyChecks from config.packages.f2cblaslapack(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.f2cblaslapack(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.f2cblaslapack 0.003859 ============================================================================================= TESTING: consistencyChecks from config.packages.BlasLapack(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.BlasLapack(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:454) ================================================================================ Checking for BLAS and LAPACK in User specified BLAS/LAPACK library ============================================================================================= TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:109) Checking for BLAS and LAPACK symbols Checking for Fortran name mangling underscore on BLAS/LAPACK Checking for functions [ddot_] in library ['-lfjlapack'] ['-lfjprofmpif', '-Wl,-rpath,/usr/lib/gcc/aarch64-redhat-linux/8', '-L/usr/lib/gcc/aarch64-redhat-linux/8', '-ldl', '-Wl,-rpath,/opt/FJSVxtclanga/.common/MECA024/lib64', '-L/opt/FJSVxtclanga/.common/MECA024/lib64', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lmpi', '-lfjstring_internal', '-Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64', '-L/opt/FJSVxtclanga/tcsds-1.2.31/lib64', '-lfj90i', '-lfj90fmt_sve', '-lfj90f', '-lfjsrcinfo', '-lfjprofcore', '-lfjprofomp', '-lmpg', '-Wl,-rpath,/opt/FJSVxos/mmm/lib64', '-L/opt/FJSVxos/mmm/lib64', '-Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj', '-L/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj', '-lm', '-lrt', '-lpthread', '-lelf', '-lgcc_s'] ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.pthread -fPIC -Kfast,openmp -fopenmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest -fopenmp -fPIC -Kfast,openmp -fopenmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -lfjlapack -lfjprofmpif -Wl,-rpath,/usr/lib/gcc/aarch64-redhat-linux/8 -L/usr/lib/gcc/aarch64-redhat-linux/8 -ldl -Wl,-rpath,/opt/FJSVxtclanga/.common/MECA024/lib64 -L/opt/FJSVxtclanga/.common/MECA024/lib64 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lfjstring_internal -Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64 -L/opt/FJSVxtclanga/tcsds-1.2.31/lib64 -lfj90i -lfj90fmt_sve -lfj90f -lfjsrcinfo -lfjprofcore -lfjprofomp -lmpg -Wl,-rpath,/opt/FJSVxos/mmm/lib64 -L/opt/FJSVxos/mmm/lib64 -Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj -L/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj -lm -lrt -lpthread -lelf -lgcc_s -ldl Defined "HAVE_LIBFJLAPACK" to "1" Checking for functions [dgetrs_] in library ['-lfjlapack'] ['-lfjprofmpif', '-Wl,-rpath,/usr/lib/gcc/aarch64-redhat-linux/8', '-L/usr/lib/gcc/aarch64-redhat-linux/8', '-ldl', '-Wl,-rpath,/opt/FJSVxtclanga/.common/MECA024/lib64', '-L/opt/FJSVxtclanga/.common/MECA024/lib64', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lmpi', '-lfjstring_internal', '-Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64', '-L/opt/FJSVxtclanga/tcsds-1.2.31/lib64', '-lfj90i', '-lfj90fmt_sve', '-lfj90f', '-lfjsrcinfo', '-lfjprofcore', '-lfjprofomp', '-lmpg', '-Wl,-rpath,/opt/FJSVxos/mmm/lib64', '-L/opt/FJSVxos/mmm/lib64', '-Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj', '-L/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj', '-lm', '-lrt', '-lpthread', '-lelf', '-lgcc_s'] ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.pthread -fPIC -Kfast,openmp -fopenmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgetrs_(); static void _check_dgetrs_() { dgetrs_(); } int main() { _check_dgetrs_();; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest -fopenmp -fPIC -Kfast,openmp -fopenmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -lfjlapack -lfjprofmpif -Wl,-rpath,/usr/lib/gcc/aarch64-redhat-linux/8 -L/usr/lib/gcc/aarch64-redhat-linux/8 -ldl -Wl,-rpath,/opt/FJSVxtclanga/.common/MECA024/lib64 -L/opt/FJSVxtclanga/.common/MECA024/lib64 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lfjstring_internal -Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64 -L/opt/FJSVxtclanga/tcsds-1.2.31/lib64 -lfj90i -lfj90fmt_sve -lfj90f -lfjsrcinfo -lfjprofcore -lfjprofomp -lmpg -Wl,-rpath,/opt/FJSVxos/mmm/lib64 -L/opt/FJSVxos/mmm/lib64 -Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj -L/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj -lm -lrt -lpthread -lelf -lgcc_s -ldl Defined "HAVE_LIBFJLAPACK" to "1" Checking for functions [dgeev_] in library ['-lfjlapack'] ['-lfjprofmpif', '-Wl,-rpath,/usr/lib/gcc/aarch64-redhat-linux/8', '-L/usr/lib/gcc/aarch64-redhat-linux/8', '-ldl', '-Wl,-rpath,/opt/FJSVxtclanga/.common/MECA024/lib64', '-L/opt/FJSVxtclanga/.common/MECA024/lib64', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lmpi', '-lfjstring_internal', '-Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64', '-L/opt/FJSVxtclanga/tcsds-1.2.31/lib64', '-lfj90i', '-lfj90fmt_sve', '-lfj90f', '-lfjsrcinfo', '-lfjprofcore', '-lfjprofomp', '-lmpg', '-Wl,-rpath,/opt/FJSVxos/mmm/lib64', '-L/opt/FJSVxos/mmm/lib64', '-Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj', '-L/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj', '-lm', '-lrt', '-lpthread', '-lelf', '-lgcc_s'] ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.pthread -fPIC -Kfast,openmp -fopenmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgeev_(); static void _check_dgeev_() { dgeev_(); } int main() { _check_dgeev_();; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest -fopenmp -fPIC -Kfast,openmp -fopenmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -lfjlapack -lfjprofmpif -Wl,-rpath,/usr/lib/gcc/aarch64-redhat-linux/8 -L/usr/lib/gcc/aarch64-redhat-linux/8 -ldl -Wl,-rpath,/opt/FJSVxtclanga/.common/MECA024/lib64 -L/opt/FJSVxtclanga/.common/MECA024/lib64 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lfjstring_internal -Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64 -L/opt/FJSVxtclanga/tcsds-1.2.31/lib64 -lfj90i -lfj90fmt_sve -lfj90f -lfjsrcinfo -lfjprofcore -lfjprofomp -lmpg -Wl,-rpath,/opt/FJSVxos/mmm/lib64 -L/opt/FJSVxos/mmm/lib64 -Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj -L/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj -lm -lrt -lpthread -lelf -lgcc_s -ldl Defined "HAVE_LIBFJLAPACK" to "1" Found Fortran mangling on BLAS/LAPACK which is underscore Defined "BLASLAPACK_UNDERSCORE" to "1" ============================================================================================= TESTING: checkMKL from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:551) Check for Intel MKL library Checking for functions [mkl_set_num_threads] in library ['-lfjlapack', '-lfjprofmpif', '-Wl,-rpath,/usr/lib/gcc/aarch64-redhat-linux/8', '-L/usr/lib/gcc/aarch64-redhat-linux/8', '-ldl', '-Wl,-rpath,/opt/FJSVxtclanga/.common/MECA024/lib64', '-L/opt/FJSVxtclanga/.common/MECA024/lib64', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lmpi', '-lfjstring_internal', '-Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64', '-L/opt/FJSVxtclanga/tcsds-1.2.31/lib64', '-lfj90i', '-lfj90fmt_sve', '-lfj90f', '-lfjsrcinfo', '-lfjprofcore', '-lfjprofomp', '-lmpg', '-Wl,-rpath,/opt/FJSVxos/mmm/lib64', '-L/opt/FJSVxos/mmm/lib64', '-Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj', '-L/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj', '-lm', '-lrt', '-lpthread', '-lelf', '-lgcc_s'] [] ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.pthread -fPIC -Kfast,openmp -fopenmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char mkl_set_num_threads(); static void _check_mkl_set_num_threads() { mkl_set_num_threads(); } int main() { _check_mkl_set_num_threads();; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest -fopenmp -fPIC -Kfast,openmp -fopenmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -lfjlapack -lfjprofmpif -Wl,-rpath,/usr/lib/gcc/aarch64-redhat-linux/8 -L/usr/lib/gcc/aarch64-redhat-linux/8 -ldl -Wl,-rpath,/opt/FJSVxtclanga/.common/MECA024/lib64 -L/opt/FJSVxtclanga/.common/MECA024/lib64 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lfjstring_internal -Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64 -L/opt/FJSVxtclanga/tcsds-1.2.31/lib64 -lfj90i -lfj90fmt_sve -lfj90f -lfjsrcinfo -lfjprofcore -lfjprofomp -lmpg -Wl,-rpath,/opt/FJSVxos/mmm/lib64 -L/opt/FJSVxos/mmm/lib64 -Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj -L/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj -lm -lrt -lpthread -lelf -lgcc_s -ldl Possible ERROR while running linker: exit code 1 stderr: /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o: In function `_check_mkl_set_num_threads': /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.c:5: undefined reference to `mkl_set_num_threads' ============================================================================================= TESTING: checkESSL from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:589) Check for the IBM ESSL library Checking for functions [iessl] in library ['-lfjlapack', '-lfjprofmpif', '-Wl,-rpath,/usr/lib/gcc/aarch64-redhat-linux/8', '-L/usr/lib/gcc/aarch64-redhat-linux/8', '-ldl', '-Wl,-rpath,/opt/FJSVxtclanga/.common/MECA024/lib64', '-L/opt/FJSVxtclanga/.common/MECA024/lib64', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lmpi', '-lfjstring_internal', '-Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64', '-L/opt/FJSVxtclanga/tcsds-1.2.31/lib64', '-lfj90i', '-lfj90fmt_sve', '-lfj90f', '-lfjsrcinfo', '-lfjprofcore', '-lfjprofomp', '-lmpg', '-Wl,-rpath,/opt/FJSVxos/mmm/lib64', '-L/opt/FJSVxos/mmm/lib64', '-Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj', '-L/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj', '-lm', '-lrt', '-lpthread', '-lelf', '-lgcc_s'] [] ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.pthread -fPIC -Kfast,openmp -fopenmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char iessl(); static void _check_iessl() { iessl(); } int main() { _check_iessl();; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest -fopenmp -fPIC -Kfast,openmp -fopenmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -lfjlapack -lfjprofmpif -Wl,-rpath,/usr/lib/gcc/aarch64-redhat-linux/8 -L/usr/lib/gcc/aarch64-redhat-linux/8 -ldl -Wl,-rpath,/opt/FJSVxtclanga/.common/MECA024/lib64 -L/opt/FJSVxtclanga/.common/MECA024/lib64 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lfjstring_internal -Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64 -L/opt/FJSVxtclanga/tcsds-1.2.31/lib64 -lfj90i -lfj90fmt_sve -lfj90f -lfjsrcinfo -lfjprofcore -lfjprofomp -lmpg -Wl,-rpath,/opt/FJSVxos/mmm/lib64 -L/opt/FJSVxos/mmm/lib64 -Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj -L/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj -lm -lrt -lpthread -lelf -lgcc_s -ldl Possible ERROR while running linker: exit code 1 stderr: /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o: In function `_check_iessl': /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.c:5: undefined reference to `iessl' ============================================================================================= TESTING: checkPESSL from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:597) Check for the IBM PESSL library - and error out - if used instead of ESSL Checking for functions [ipessl] in library ['-lfjlapack', '-lfjprofmpif', '-Wl,-rpath,/usr/lib/gcc/aarch64-redhat-linux/8', '-L/usr/lib/gcc/aarch64-redhat-linux/8', '-ldl', '-Wl,-rpath,/opt/FJSVxtclanga/.common/MECA024/lib64', '-L/opt/FJSVxtclanga/.common/MECA024/lib64', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lmpi', '-lfjstring_internal', '-Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64', '-L/opt/FJSVxtclanga/tcsds-1.2.31/lib64', '-lfj90i', '-lfj90fmt_sve', '-lfj90f', '-lfjsrcinfo', '-lfjprofcore', '-lfjprofomp', '-lmpg', '-Wl,-rpath,/opt/FJSVxos/mmm/lib64', '-L/opt/FJSVxos/mmm/lib64', '-Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj', '-L/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj', '-lm', '-lrt', '-lpthread', '-lelf', '-lgcc_s'] [] ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.pthread -fPIC -Kfast,openmp -fopenmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ipessl(); static void _check_ipessl() { ipessl(); } int main() { _check_ipessl();; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest -fopenmp -fPIC -Kfast,openmp -fopenmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -lfjlapack -lfjprofmpif -Wl,-rpath,/usr/lib/gcc/aarch64-redhat-linux/8 -L/usr/lib/gcc/aarch64-redhat-linux/8 -ldl -Wl,-rpath,/opt/FJSVxtclanga/.common/MECA024/lib64 -L/opt/FJSVxtclanga/.common/MECA024/lib64 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lfjstring_internal -Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64 -L/opt/FJSVxtclanga/tcsds-1.2.31/lib64 -lfj90i -lfj90fmt_sve -lfj90f -lfjsrcinfo -lfjprofcore -lfjprofomp -lmpg -Wl,-rpath,/opt/FJSVxos/mmm/lib64 -L/opt/FJSVxos/mmm/lib64 -Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj -L/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj -lm -lrt -lpthread -lelf -lgcc_s -ldl Possible ERROR while running linker: exit code 1 stderr: /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o: In function `_check_ipessl': /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.c:5: undefined reference to `ipessl' ============================================================================================= TESTING: checkMissing from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:622) Check for missing LAPACK routines Checking for functions [dgelss_ dgerfs_ dgges_ dhgeqz_ dhseqr_ dorgqr_ dormqr_ dstebz_ dstegr_ dstein_ dsteqr_ dsytri_ dtgsen_ dtrsen_ dtrtrs_] in library ['-lfjlapack'] ['-lfjlapack', '-lfjprofmpif', '-Wl,-rpath,/usr/lib/gcc/aarch64-redhat-linux/8', '-L/usr/lib/gcc/aarch64-redhat-linux/8', '-ldl', '-Wl,-rpath,/opt/FJSVxtclanga/.common/MECA024/lib64', '-L/opt/FJSVxtclanga/.common/MECA024/lib64', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lmpi', '-lfjstring_internal', '-Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64', '-L/opt/FJSVxtclanga/tcsds-1.2.31/lib64', '-lfj90i', '-lfj90fmt_sve', '-lfj90f', '-lfjsrcinfo', '-lfjprofcore', '-lfjprofomp', '-lmpg', '-Wl,-rpath,/opt/FJSVxos/mmm/lib64', '-L/opt/FJSVxos/mmm/lib64', '-Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj', '-L/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj', '-lm', '-lrt', '-lpthread', '-lelf', '-lgcc_s'] ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.pthread -fPIC -Kfast,openmp -fopenmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgelss_(); static void _check_dgelss_() { dgelss_(); } char dgerfs_(); static void _check_dgerfs_() { dgerfs_(); } char dgges_(); static void _check_dgges_() { dgges_(); } char dhgeqz_(); static void _check_dhgeqz_() { dhgeqz_(); } char dhseqr_(); static void _check_dhseqr_() { dhseqr_(); } char dorgqr_(); static void _check_dorgqr_() { dorgqr_(); } char dormqr_(); static void _check_dormqr_() { dormqr_(); } char dstebz_(); static void _check_dstebz_() { dstebz_(); } char dstegr_(); static void _check_dstegr_() { dstegr_(); } char dstein_(); static void _check_dstein_() { dstein_(); } char dsteqr_(); static void _check_dsteqr_() { dsteqr_(); } char dsytri_(); static void _check_dsytri_() { dsytri_(); } char dtgsen_(); static void _check_dtgsen_() { dtgsen_(); } char dtrsen_(); static void _check_dtrsen_() { dtrsen_(); } char dtrtrs_(); static void _check_dtrtrs_() { dtrtrs_(); } int main() { _check_dgelss_(); _check_dgerfs_(); _check_dgges_(); _check_dhgeqz_(); _check_dhseqr_(); _check_dorgqr_(); _check_dormqr_(); _check_dstebz_(); _check_dstegr_(); _check_dstein_(); _check_dsteqr_(); _check_dsytri_(); _check_dtgsen_(); _check_dtrsen_(); _check_dtrtrs_();; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest -fopenmp -fPIC -Kfast,openmp -fopenmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -lfjlapack -lfjlapack -lfjprofmpif -Wl,-rpath,/usr/lib/gcc/aarch64-redhat-linux/8 -L/usr/lib/gcc/aarch64-redhat-linux/8 -ldl -Wl,-rpath,/opt/FJSVxtclanga/.common/MECA024/lib64 -L/opt/FJSVxtclanga/.common/MECA024/lib64 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lfjstring_internal -Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64 -L/opt/FJSVxtclanga/tcsds-1.2.31/lib64 -lfj90i -lfj90fmt_sve -lfj90f -lfjsrcinfo -lfjprofcore -lfjprofomp -lmpg -Wl,-rpath,/opt/FJSVxos/mmm/lib64 -L/opt/FJSVxos/mmm/lib64 -Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj -L/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj -lm -lrt -lpthread -lelf -lgcc_s -ldl Defined "HAVE_LIBFJLAPACK" to "1" ============================================================================================= TESTING: checklsame from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:638) Do the BLAS/LAPACK libraries have a valid lsame() function with correct binding. Checking for functions [lsame_] in library ['-lfjlapack', '-lfjprofmpif', '-Wl,-rpath,/usr/lib/gcc/aarch64-redhat-linux/8', '-L/usr/lib/gcc/aarch64-redhat-linux/8', '-ldl', '-Wl,-rpath,/opt/FJSVxtclanga/.common/MECA024/lib64', '-L/opt/FJSVxtclanga/.common/MECA024/lib64', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lmpi', '-lfjstring_internal', '-Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64', '-L/opt/FJSVxtclanga/tcsds-1.2.31/lib64', '-lfj90i', '-lfj90fmt_sve', '-lfj90f', '-lfjsrcinfo', '-lfjprofcore', '-lfjprofomp', '-lmpg', '-Wl,-rpath,/opt/FJSVxos/mmm/lib64', '-L/opt/FJSVxos/mmm/lib64', '-Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj', '-L/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj', '-lm', '-lrt', '-lpthread', '-lelf', '-lgcc_s'] [] ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.pthread -fPIC -Kfast,openmp -fopenmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char lsame_(); static void _check_lsame_() { lsame_(); } int main() { _check_lsame_();; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest -fopenmp -fPIC -Kfast,openmp -fopenmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -lfjlapack -lfjprofmpif -Wl,-rpath,/usr/lib/gcc/aarch64-redhat-linux/8 -L/usr/lib/gcc/aarch64-redhat-linux/8 -ldl -Wl,-rpath,/opt/FJSVxtclanga/.common/MECA024/lib64 -L/opt/FJSVxtclanga/.common/MECA024/lib64 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lfjstring_internal -Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64 -L/opt/FJSVxtclanga/tcsds-1.2.31/lib64 -lfj90i -lfj90fmt_sve -lfj90f -lfjsrcinfo -lfjprofcore -lfjprofomp -lmpg -Wl,-rpath,/opt/FJSVxos/mmm/lib64 -L/opt/FJSVxos/mmm/lib64 -Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj -L/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj -lm -lrt -lpthread -lelf -lgcc_s -ldl Defined "HAVE_LIBFJLAPACK" to "1" Defined "HAVE_LIBFJPROFMPIF" to "1" Defined "HAVE_LIBDL" to "1" Defined "HAVE_LIBMPI_USEMPIF08" to "1" Defined "HAVE_LIBMPI_USEMPI_IGNORE_TKR" to "1" Defined "HAVE_LIBMPI_MPIFH" to "1" Defined "HAVE_LIBMPI" to "1" Defined "HAVE_LIBFJSTRING_INTERNAL" to "1" Defined "HAVE_LIBFJ90I" to "1" Defined "HAVE_LIBFJ90FMT_SVE" to "1" Defined "HAVE_LIBFJ90F" to "1" Defined "HAVE_LIBFJSRCINFO" to "1" Defined "HAVE_LIBFJPROFCORE" to "1" Defined "HAVE_LIBFJPROFOMP" to "1" Defined "HAVE_LIBMPG" to "1" Defined "HAVE_LIBM" to "1" Defined "HAVE_LIBRT" to "1" Defined "HAVE_LIBPTHREAD" to "1" Defined "HAVE_LIBELF" to "1" Defined "HAVE_LIBGCC_S" to "1" ===== Checking compiler Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.pthread -fPIC -Kfast,openmp -fopenmp /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.c", line 5: warning: last line of file ends without a newline } ^ Source: #include "confdefs.h" #include "conffix.h" char *dgeev_(void); char* testroutine(void){return dgeev_(); }===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.pthread -fPIC -Kfast,openmp -fopenmp /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.c", line 5: warning: last line of file ends without a newline } ^ Source: #include "confdefs.h" #include "conffix.h" char *dgeev_(void); char* testroutine(void){return dgeev_(); }Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/libconftest.so -fopenmp -shared -fPIC -Kfast,openmp -fopenmp /home/ra010009/a04199/petsc-rz04nngc/config.setCompilers/conftest.o -Wl,-rpath,/usr/lib/gcc/aarch64-redhat-linux/8 -L/usr/lib/gcc/aarch64-redhat-linux/8 -Wl,-rpath,/opt/FJSVxtclanga/.common/MECA024/lib64 -L/opt/FJSVxtclanga/.common/MECA024/lib64 -Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64 -L/opt/FJSVxtclanga/tcsds-1.2.31/lib64 -Wl,-rpath,/opt/FJSVxos/mmm/lib64 -L/opt/FJSVxos/mmm/lib64 -Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj -L/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj -lfjlapack -lfjprofmpif -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lfjstring_internal -lfj90i -lfj90fmt_sve -lfj90f -lfjsrcinfo -lfjprofcore -lfjprofomp -lmpg -lm -lrt -lpthread -lelf -lgcc_s -ldl ============================================================================================= TESTING: checkRuntimeIssues from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:697) Determines if BLAS/LAPACK routines use 32 or 64 bit integers ======== Checking running linked program ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.packages.BlasLapack/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.pthread -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.BlasLapack -fPIC -Kfast,openmp -fopenmp /home/ra010009/a04199/petsc-rz04nngc/config.packages.BlasLapack/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { FILE *output = fopen("runtimetestoutput","w"); extern double ddot_(const int*,const double*,const int *,const double*,const int*); double x1mkl[4] = {3.0,5.0,7.0,9.0}; int one1mkl = 1,nmkl = 2; double dotresultmkl = 0; dotresultmkl = ddot_(&nmkl,x1mkl,&one1mkl,x1mkl,&one1mkl); fprintf(output, "-known-64-bit-blas-indices=%d",dotresultmkl != 34);; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.packages.BlasLapack/conftest -fopenmp -fPIC -Kfast,openmp -fopenmp /home/ra010009/a04199/petsc-rz04nngc/config.packages.BlasLapack/conftest.o -lfjlapack -lfjprofmpif -Wl,-rpath,/usr/lib/gcc/aarch64-redhat-linux/8 -L/usr/lib/gcc/aarch64-redhat-linux/8 -ldl -Wl,-rpath,/opt/FJSVxtclanga/.common/MECA024/lib64 -L/opt/FJSVxtclanga/.common/MECA024/lib64 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lfjstring_internal -Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64 -L/opt/FJSVxtclanga/tcsds-1.2.31/lib64 -lfj90i -lfj90fmt_sve -lfj90f -lfjsrcinfo -lfjprofcore -lfjprofomp -lmpg -Wl,-rpath,/opt/FJSVxos/mmm/lib64 -L/opt/FJSVxos/mmm/lib64 -Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj -L/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj -lm -lrt -lpthread -lelf -lgcc_s -ldl Testing executable /home/ra010009/a04199/petsc-rz04nngc/config.packages.BlasLapack/conftest to see if it can be run Executing: /home/ra010009/a04199/petsc-rz04nngc/config.packages.BlasLapack/conftest Running Executable with threads to time it out at 60 Executing: /home/ra010009/a04199/petsc-rz04nngc/config.packages.BlasLapack/conftest Checking for 64 bit blas indices: result 0 ============================================================================================= TESTING: checkCHeaders from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:529) Check for cblas.h and lapacke.h ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['cblas.h', 'lapacke.h'] in [] Checking include with compiler flags var CPPFLAGS [] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.zlib -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.pthread -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.openmp /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Checking include with compiler flags var CPPFLAGS [] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.zlib -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.pthread -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.openmp /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['cblas.h', 'lapacke.h'] in [] ============================================================================================= TESTING: checkVersion from config.packages.BlasLapack(config/BuildSystem/config/package.py:1026) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.BlasLapack(config/BuildSystem/config/package.py:955) By default we don't care about checking if the library is shared child config.packages.BlasLapack 5.360692 ============================================================================================= TESTING: consistencyChecks from config.packages.sundials2(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.sundials2(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.sundials2 0.004517 ============================================================================================= TESTING: consistencyChecks from config.packages.spai(config/BuildSystem/config/packages/spai.py:53) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.spai(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.spai 0.016442 ============================================================================================= TESTING: consistencyChecks from config.packages.pARMS(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.pARMS(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.pARMS 0.004191 ============================================================================================= TESTING: consistencyChecks from config.packages.p4est(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.p4est(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.p4est(config/BuildSystem/config/package.py:897) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional p4est Looking for P4EST at git.p4est, hg.p4est or a directory starting with ['p4est'] Found a copy of P4EST in git.p4est Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Executing: ['git', 'cat-file', '-e', '1727693b446ee0c987be701320db0cd5de617cfc^{commit}'] Executing: ['git', 'rev-parse', '1727693b446ee0c987be701320db0cd5de617cfc'] stdout: 1727693b446ee0c987be701320db0cd5de617cfc Executing: ['git', '-c', 'user.name=petsc-configure', '-c', 'user.email=petsc@configure', 'stash'] stdout: No local changes to save Executing: ['git', 'clean', '-f', '-d', '-x'] stdout: Removing p4est.petscconf Removing pkg.gitcommit Executing: ['git', 'checkout', '-f', '1727693b446ee0c987be701320db0cd5de617cfc'] Looking for P4EST at git.p4est, hg.p4est or a directory starting with ['p4est'] Found a copy of P4EST in git.p4est Executing: ['git', 'submodule', 'update', '--init'] Executing: mpifrt -v Executing: mpifrt -V Executing: mpifrt --version stdout: frt (FRT) 4.5.0 20210226 Copyright FUJITSU LIMITED 2019-2021 Executing: mpifrt -V Executing: mpifrt --version stdout: frt (FRT) 4.5.0 20210226 Copyright FUJITSU LIMITED 2019-2021 Executing: mpifrt -V Executing: mpifrt --version stdout: frt (FRT) 4.5.0 20210226 Copyright FUJITSU LIMITED 2019-2021 Makefile /home/ra010009/a04199/petsc/arch-arm/lib/petsc/conf/pkg.conf.p4est has correct checksum Commit file /home/ra010009/a04199/petsc/arch-arm/lib/petsc/conf/pkg.gitcommit.p4est has correct checksum Do not need to rebuild P4EST Checking for library in Download P4EST: ['/home/ra010009/a04199/petsc/arch-arm/lib/libp4est.a', 'libsc.a'] Contents: ['lib', 'share', 'etc', 'include', 'externalpackages', 'bin', 'doc'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [p4est_init] in library ['/home/ra010009/a04199/petsc/arch-arm/lib/libp4est.a', 'libsc.a'] ['/home/ra010009/a04199/petsc/arch-arm/lib/libz.a', '-lfjlapack', '-lfjprofmpif', '-Wl,-rpath,/usr/lib/gcc/aarch64-redhat-linux/8', '-L/usr/lib/gcc/aarch64-redhat-linux/8', '-ldl', '-Wl,-rpath,/opt/FJSVxtclanga/.common/MECA024/lib64', '-L/opt/FJSVxtclanga/.common/MECA024/lib64', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lmpi', '-lfjstring_internal', '-Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64', '-L/opt/FJSVxtclanga/tcsds-1.2.31/lib64', '-lfj90i', '-lfj90fmt_sve', '-lfj90f', '-lfjsrcinfo', '-lfjprofcore', '-lfjprofomp', '-lmpg', '-Wl,-rpath,/opt/FJSVxos/mmm/lib64', '-L/opt/FJSVxos/mmm/lib64', '-Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj', '-L/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj', '-lm', '-lrt', '-lpthread', '-lelf', '-lgcc_s'] ===== Checking linker Executing: mpifcc -c -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-rz04nngc/config.compilerFlags -I/home/ra010009/a04199/petsc-rz04nngc/config.compilers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.closure -I/home/ra010009/a04199/petsc-rz04nngc/config.compilersFortran -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.functions -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-rz04nngc/config.utilities.missing -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-rz04nngc/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.pthread -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.BlasLapack -I/home/ra010009/a04199/petsc-rz04nngc/config.libraries -fPIC -Kfast,openmp -fopenmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char p4est_init(); static void _check_p4est_init() { p4est_init(); } int main() { _check_p4est_init();; return 0; } Executing: mpifcc -o /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest -fopenmp -fPIC -Kfast,openmp -fopenmp /home/ra010009/a04199/petsc-rz04nngc/config.libraries/conftest.o -Wl,-rpath,/home/ra010009/a04199/petsc/arch-arm/lib -L/home/ra010009/a04199/petsc/arch-arm/lib -lp4est -lsc -Wl,-rpath,/home/ra010009/a04199/petsc/arch-arm/lib -L/home/ra010009/a04199/petsc/arch-arm/lib -lz -lfjlapack -lfjprofmpif -Wl,-rpath,/usr/lib/gcc/aarch64-redhat-linux/8 -L/usr/lib/gcc/aarch64-redhat-linux/8 -ldl -Wl,-rpath,/opt/FJSVxtclanga/.common/MECA024/lib64 -L/opt/FJSVxtclanga/.common/MECA024/lib64 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lfjstring_internal -Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64 -L/opt/FJSVxtclanga/tcsds-1.2.31/lib64 -lfj90i -lfj90fmt_sve -lfj90f -lfjsrcinfo -lfjprofcore -lfjprofomp -lmpg -Wl,-rpath,/opt/FJSVxos/mmm/lib64 -L/opt/FJSVxos/mmm/lib64 -Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj -L/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj -lm -lrt -lpthread -lelf -lgcc_s -ldl Defined "HAVE_LIBP4EST" to "1" Defined "HAVE_LIBSC" to "1" Checking for optional headers [] in Download P4EST: ['/home/ra010009/a04199/petsc/arch-arm/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/home/ra010009/a04199/petsc/arch-arm/include'] Found header files [] in ['/home/ra010009/a04199/petsc/arch-arm/include'] Checking for headers ['p4est_bits.h'] in Download P4EST: ['/home/ra010009/a04199/petsc/arch-arm/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['p4est_bits.h'] in ['/home/ra010009/a04199/petsc/arch-arm/include'] Checking include with compiler flags var CPPFLAGS ['/home/ra010009/a04199/petsc/arch-arm/include', '/home/ra010009/a04199/petsc/arch-arm/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifcc -E -I/home/ra010009/a04199/petsc-rz04nngc/config.setCompilers -I/home/ra010009/a04199/petsc-rz04nngc/config.types -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.valgrind -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.MPI -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.zlib -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.pthread -I/home/ra010009/a04199/petsc-rz04nngc/config.headers -I/home/ra010009/a04199/petsc-rz04nngc/config.packages.openmp -I/home/ra010009/a04199/petsc/arch-arm/include -I/home/ra010009/a04199/petsc/arch-arm/include /home/ra010009/a04199/petsc-rz04nngc/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['p4est_bits.h'] in ['/home/ra010009/a04199/petsc/arch-arm/include'] ============================================================================================= TESTING: checkVersion from config.packages.p4est(config/BuildSystem/config/package.py:1026) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.p4est(config/BuildSystem/config/package.py:955) By default we don't care about checking if the library is shared child config.packages.p4est 2.307253 ============================================================================================= TESTING: consistencyChecks from config.packages.mkl_sparse_optimize(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.mkl_sparse_optimize(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.mkl_sparse_optimize(config/BuildSystem/config/packages/mkl_sparse_optimize.py:48) ============================================================================================= TESTING: checkVersion from config.packages.mkl_sparse_optimize(config/BuildSystem/config/package.py:1026) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.mkl_sparse_optimize(config/BuildSystem/config/package.py:955) By default we don't care about checking if the library is shared child config.packages.mkl_sparse_optimize 0.006603 ============================================================================================= TESTING: consistencyChecks from config.packages.mkl_cpardiso(config/BuildSystem/config/packages/mkl_cpardiso.py:20) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mkl_cpardiso(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.mkl_cpardiso 0.019553 ============================================================================================= TESTING: consistencyChecks from config.packages.kokkos(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.kokkos(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.kokkos(config/BuildSystem/config/packages/kokkos.py:168) ================================================================================== Checking for a functional kokkos Looking for KOKKOS at git.kokkos, hg.kokkos or a directory starting with ['kokkos'] Found a copy of KOKKOS in git.kokkos Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Executing: ['git', 'cat-file', '-e', '3.2.00^{commit}'] Executing: ['git', 'rev-parse', '3.2.00'] stdout: 03ded4e816da5927b946065b005ebfdf38e5a438 Executing: ['git', '-c', 'user.name=petsc-configure', '-c', 'user.email=petsc@configure', 'stash'] stdout: No local changes to save Executing: ['git', 'clean', '-f', '-d', '-x'] stdout: Removing kokkos.petscconf Removing petsc-build/ Removing pkg.gitcommit Executing: ['git', 'checkout', '-f', '03ded4e816da5927b946065b005ebfdf38e5a438'] Executing: mpifrt -V Executing: mpifrt --version stdout: frt (FRT) 4.5.0 20210226 Copyright FUJITSU LIMITED 2019-2021 Executing: mpifrt -V Executing: mpifrt --version stdout: frt (FRT) 4.5.0 20210226 Copyright FUJITSU LIMITED 2019-2021 Executing: mpifrt -V Executing: mpifrt --version stdout: frt (FRT) 4.5.0 20210226 Copyright FUJITSU LIMITED 2019-2021 Removing configure arguments ['-DCMAKE_CXX_STANDARD=14'] Have to rebuild KOKKOS, /vol0004/ra010009/a04199/petsc/arch-arm/externalpackages/git.kokkos/kokkos.petscconf != /home/ra010009/a04199/petsc/arch-arm/lib/petsc/conf/pkg.conf.kokkos ============================================================================================= Configuring KOKKOS with cmake; this may take several minutes ============================================================================================= Executing: /home/ra010009/a04199/petsc/arch-arm/bin/cmake .. -DCMAKE_INSTALL_PREFIX=/home/ra010009/a04199/petsc/arch-arm -DCMAKE_INSTALL_NAME_DIR:STRING="/home/ra010009/a04199/petsc/arch-arm/lib" -DCMAKE_INSTALL_LIBDIR:STRING="lib" -DCMAKE_VERBOSE_MAKEFILE=1 -DCMAKE_BUILD_TYPE=Release -DCMAKE_C_COMPILER="mpifcc" -DMPI_C_COMPILER="mpifcc" -DCMAKE_AR=/usr/bin/ar -DCMAKE_RANLIB=/usr/bin/ranlib -DCMAKE_C_FLAGS:STRING="-fPIC -Kfast,openmp -fopenmp" -DCMAKE_C_FLAGS_DEBUG:STRING="-fPIC -Kfast,openmp -fopenmp" -DCMAKE_C_FLAGS_RELEASE:STRING="-fPIC -Kfast,openmp -fopenmp" -DCMAKE_CXX_COMPILER="mpiFCC" -DMPI_CXX_COMPILER="mpiFCC" -DCMAKE_CXX_FLAGS:STRING="-Kfast,openmp -fopenmp -fPIC -fopenmp" -DCMAKE_CXX_FLAGS_DEBUG:STRING="-Kfast,openmp -fopenmp -fPIC -fopenmp" -DCMAKE_CXX_FLAGS_RELEASE:STRING="-Kfast,openmp -fopenmp -fPIC -fopenmp" -DCMAKE_Fortran_COMPILER="mpifrt" -DMPI_Fortran_COMPILER="mpifrt" -DCMAKE_Fortran_FLAGS:STRING="-fPIC -O -fopenmp" -DCMAKE_Fortran_FLAGS_DEBUG:STRING="-fPIC -O -fopenmp" -DCMAKE_Fortran_FLAGS_RELEASE:STRING="-fPIC -O -fopenmp" -DCMAKE_EXE_LINKER_FLAGS:STRING=" -fopenmp" -DBUILD_SHARED_LIBS:BOOL=ON -DUSE_XSDK_DEFAULTS=YES -DXSDK_ENABLE_DEBUG=NO -DCMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=ON -DCMAKE_BUILD_WITH_INSTALL_RPATH:BOOL=ON -DKokkos_ENABLE_MPI=ON -DKokkos_ENABLE_SERIAL=ON -DKokkos_ENABLE_OPENMP=ON -DCMAKE_CXX_STANDARD="14" -DCMAKE_BUILD_TYPE=Release -DBUILD_TESTING=OFF -DKokkos_ENABLE_LIBDL=OFF -DKokkos_ENABLE_OPENMP=ON -DKokkos_ENABLE_AGGRESSIVE_VECTORIZATION=ON stdout: -- Setting default Kokkos CXX standard to 14 -- The CXX compiler identification is Fujitsu -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /opt/FJSVxtclanga/tcsds-1.2.31/bin/mpiFCC - skipped -- Setting policy CMP0074 to use _ROOT variables -- The project name is: Kokkos -- Configuring incomplete, errors occurred! See also "/vol0004/ra010009/a04199/petsc/arch-arm/externalpackages/git.kokkos/petsc-build/CMakeFiles/CMakeOutput.log". Error configuring KOKKOS with cmake Could not execute "['/home/ra010009/a04199/petsc/arch-arm/bin/cmake .. -DCMAKE_INSTALL_PREFIX=/home/ra010009/a04199/petsc/arch-arm -DCMAKE_INSTALL_NAME_DIR:STRING="/home/ra010009/a04199/petsc/arch-arm/lib" -DCMAKE_INSTALL_LIBDIR:STRING="lib" -DCMAKE_VERBOSE_MAKEFILE=1 -DCMAKE_BUILD_TYPE=Release -DCMAKE_C_COMPILER="mpifcc" -DMPI_C_COMPILER="mpifcc" -DCMAKE_AR=/usr/bin/ar -DCMAKE_RANLIB=/usr/bin/ranlib -DCMAKE_C_FLAGS:STRING="-fPIC -Kfast,openmp -fopenmp" -DCMAKE_C_FLAGS_DEBUG:STRING="-fPIC -Kfast,openmp -fopenmp" -DCMAKE_C_FLAGS_RELEASE:STRING="-fPIC -Kfast,openmp -fopenmp" -DCMAKE_CXX_COMPILER="mpiFCC" -DMPI_CXX_COMPILER="mpiFCC" -DCMAKE_CXX_FLAGS:STRING="-Kfast,openmp -fopenmp -fPIC -fopenmp" -DCMAKE_CXX_FLAGS_DEBUG:STRING="-Kfast,openmp -fopenmp -fPIC -fopenmp" -DCMAKE_CXX_FLAGS_RELEASE:STRING="-Kfast,openmp -fopenmp -fPIC -fopenmp" -DCMAKE_Fortran_COMPILER="mpifrt" -DMPI_Fortran_COMPILER="mpifrt" -DCMAKE_Fortran_FLAGS:STRING="-fPIC -O -fopenmp" -DCMAKE_Fortran_FLAGS_DEBUG:STRING="-fPIC -O -fopenmp" -DCMAKE_Fortran_FLAGS_RELEASE:STRING="-fPIC -O -fopenmp" -DCMAKE_EXE_LINKER_FLAGS:STRING=" -fopenmp" -DBUILD_SHARED_LIBS:BOOL=ON -DUSE_XSDK_DEFAULTS=YES -DXSDK_ENABLE_DEBUG=NO -DCMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=ON -DCMAKE_BUILD_WITH_INSTALL_RPATH:BOOL=ON -DKokkos_ENABLE_MPI=ON -DKokkos_ENABLE_SERIAL=ON -DKokkos_ENABLE_OPENMP=ON -DCMAKE_CXX_STANDARD="14" -DCMAKE_BUILD_TYPE=Release -DBUILD_TESTING=OFF -DKokkos_ENABLE_LIBDL=OFF -DKokkos_ENABLE_OPENMP=ON -DKokkos_ENABLE_AGGRESSIVE_VECTORIZATION=ON']": -- Setting default Kokkos CXX standard to 14 -- The CXX compiler identification is Fujitsu -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /opt/FJSVxtclanga/tcsds-1.2.31/bin/mpiFCC - skipped -- Setting policy CMP0074 to use _ROOT variables -- The project name is: Kokkos -- Configuring incomplete, errors occurred! See also "/vol0004/ra010009/a04199/petsc/arch-arm/externalpackages/git.kokkos/petsc-build/CMakeFiles/CMakeOutput.log".CMake Error at cmake/kokkos_compiler_id.cmake:129 (STRING): STRING sub-command REPLACE requires at least four arguments. Call Stack (most recent call first): cmake/kokkos_tribits.cmake:174 (INCLUDE) CMakeLists.txt:166 (KOKKOS_SETUP_BUILD_ENVIRONMENT) CMake Warning at cmake/kokkos_test_cxx_std.cmake:47 (MESSAGE): C++14 is not supported as a compiler feature. We will choose custom flags for now, but this behavior has been deprecated. Please open an issue at https://github.com/kokkos/kokkos/issues reporting that Fujitsu failed for 14, preferrably including your CMake command. Call Stack (most recent call first): cmake/kokkos_test_cxx_std.cmake:73 (kokkos_set_cxx_standard_feature) cmake/kokkos_tribits.cmake:201 (INCLUDE) CMakeLists.txt:166 (KOKKOS_SETUP_BUILD_ENVIRONMENT) CMake Error at cmake/kokkos_test_cxx_std.cmake:53 (MESSAGE): Compiler Fujitsu should support cxx_std_14, but CMake reports feature not supported Call Stack (most recent call first): cmake/kokkos_test_cxx_std.cmake:73 (kokkos_set_cxx_standard_feature) cmake/kokkos_tribits.cmake:201 (INCLUDE) CMakeLists.txt:166 (KOKKOS_SETUP_BUILD_ENVIRONMENT) **** Configure header /home/ra010009/a04199/petsc-rz04nngc/confdefs.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #define PETSC_Alignx(a,b) #define PETSC_BLASLAPACK_UNDERSCORE 1 #define PETSC_CLANGUAGE_C 1 #define PETSC_CXX_INLINE inline #define PETSC_CXX_RESTRICT __restrict #define PETSC_C_INLINE inline #define PETSC_C_RESTRICT __restrict #define PETSC_FORTRAN_CHARLEN_T int #define PETSC_FORTRAN_TYPE_INITIALIZE = -2 #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_BZERO 1 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_HAVE_CXX_DIALECT_CXX11 1 #define PETSC_HAVE_CXX_DIALECT_CXX14 1 #define PETSC_HAVE_DLADDR 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_HAVE_ERF 1 #define PETSC_HAVE_F90_2PTR_ARG 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_FENV_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_FORTRAN_FLUSH 1 #define PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT 1 #define PETSC_HAVE_FORTRAN_TYPE_STAR 1 #define PETSC_HAVE_FORTRAN_UNDERSCORE 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_GETWD 1 #define PETSC_HAVE_INTTYPES_H 1 #define PETSC_HAVE_ISINF 1 #define PETSC_HAVE_ISNAN 1 #define PETSC_HAVE_ISNORMAL 1 #define PETSC_HAVE_LGAMMA 1 #define PETSC_HAVE_LOG2 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_MALLOC_H 1 #define PETSC_HAVE_MEMALIGN 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE_MMAP 1 #define PETSC_HAVE_MPIIO 1 #define PETSC_HAVE_MPI_COMBINER_CONTIGUOUS 1 #define PETSC_HAVE_MPI_COMBINER_DUP 1 #define PETSC_HAVE_MPI_COMBINER_NAMED 1 #define PETSC_HAVE_MPI_EXSCAN 1 #define PETSC_HAVE_MPI_F90MODULE 1 #define PETSC_HAVE_MPI_F90MODULE_VISIBILITY 1 #define PETSC_HAVE_MPI_FINALIZED 1 #define PETSC_HAVE_MPI_GET_ACCUMULATE 1 #define PETSC_HAVE_MPI_GET_LIBRARY_VERSION 1 #define PETSC_HAVE_MPI_IALLREDUCE 1 #define PETSC_HAVE_MPI_IBARRIER 1 #define PETSC_HAVE_MPI_INIT_THREAD 1 #define PETSC_HAVE_MPI_INT64_T 1 #define PETSC_HAVE_MPI_IN_PLACE 1 #define PETSC_HAVE_MPI_LONG_DOUBLE 1 #define PETSC_HAVE_MPI_NEIGHBORHOOD_COLLECTIVES 1 #define PETSC_HAVE_MPI_NONBLOCKING_COLLECTIVES 1 #define PETSC_HAVE_MPI_ONE_SIDED 1 #define PETSC_HAVE_MPI_PROCESS_SHARED_MEMORY 1 #define PETSC_HAVE_MPI_REDUCE_LOCAL 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER_BLOCK 1 #define PETSC_HAVE_MPI_RGET 1 #define PETSC_HAVE_MPI_TYPE_DUP 1 #define PETSC_HAVE_MPI_TYPE_GET_ENVELOPE 1 #define PETSC_HAVE_MPI_WIN_CREATE 1 #define PETSC_HAVE_NANOSLEEP 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_OMPI_MAJOR_VERSION 4 #define PETSC_HAVE_OMPI_MINOR_VERSION 0 #define PETSC_HAVE_OMPI_RELEASE_VERSION 1 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_PTHREAD_BARRIER_T 1 #define PETSC_HAVE_PTHREAD_H 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_SCHED_CPU_SET_T 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_STRUCT_SIGACTION 1 #define PETSC_HAVE_SYSINFO 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_SYS_PROCFS_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_SYS_SYSCTL_H 1 #define PETSC_HAVE_SYS_SYSINFO_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_USLEEP 1 #define PETSC_HAVE_VALGRIND 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_IS_COLORING_MAX USHRT_MAX #define PETSC_IS_COLORING_VALUE_TYPE short #define PETSC_IS_COLORING_VALUE_TYPE_F integer2 #define PETSC_LEVEL1_DCACHE_LINESIZE 256 #define PETSC_MAX_PATH_LEN 4096 #define PETSC_MEMALIGN 16 #define PETSC_MPIU_IS_COLORING_VALUE_TYPE MPI_UNSIGNED_SHORT #define PETSC_PYTHON_EXE "/usr/bin/python3" #define PETSC_SIGNAL_CAST #define PETSC_SIZEOF_ENUM 4 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG 8 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_USE_AVX512_KERNELS 1 #define PETSC_USE_BACKWARD_LOOP 1 #define PETSC_USE_CTABLE 1 #define PETSC_USE_DEBUGGER "gdb" #define PETSC_USE_INFO 1 #define PETSC_USE_LOG 1 #define PETSC_USE_MALLOC_COALESCED 1 #define PETSC_USE_PROC_FOR_SIZE 1 #define PETSC_USE_REAL_DOUBLE 1 #define PETSC_USE_SHARED_LIBRARIES 1 #define PETSC_USE_VISIBILITY_C 1 #define PETSC_USE_VISIBILITY_CXX 1 #define PETSC_USING_64BIT_PTR 1 #define PETSC_USING_F2003 1 #define PETSC_USING_F90FREEFORM 1 #define PETSC_VERSION_BRANCH_GIT "adams/landau-gpu-opt" #define PETSC_VERSION_DATE_GIT "2021-04-13 09:07:58 -0400" #define PETSC_VERSION_GIT "v3.15.0-147-g35973a90ab" #define PETSC__BSD_SOURCE 1 #define PETSC__DEFAULT_SOURCE 1 #define PETSC__GNU_SOURCE 1 #endif **** C specific Configure header /home/ra010009/a04199/petsc-rz04nngc/conffix.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #if defined(__cplusplus) extern "C" { } #else #endif #endif ******************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): ------------------------------------------------------------------------------- Error configuring KOKKOS with cmake ******************************************************************************* File "/vol0004/ra010009/a04199/petsc/config/configure.py", line 458, in petsc_configure framework.configure(out = sys.stdout) File "/vol0004/ra010009/a04199/petsc/config/BuildSystem/config/framework.py", line 1289, in configure self.processChildren() File "/vol0004/ra010009/a04199/petsc/config/BuildSystem/config/framework.py", line 1277, in processChildren self.serialEvaluation(self.childGraph) File "/vol0004/ra010009/a04199/petsc/config/BuildSystem/config/framework.py", line 1252, in serialEvaluation child.configure() File "/vol0004/ra010009/a04199/petsc/config/BuildSystem/config/package.py", line 1146, in configure self.executeTest(self.configureLibrary) File "/vol0004/ra010009/a04199/petsc/config/BuildSystem/config/base.py", line 138, in executeTest ret = test(*args,**kargs) File "/vol0004/ra010009/a04199/petsc/config/BuildSystem/config/packages/kokkos.py", line 170, in configureLibrary config.package.CMakePackage.configureLibrary(self) File "/vol0004/ra010009/a04199/petsc/config/BuildSystem/config/package.py", line 904, in configureLibrary for location, directory, lib, incl in self.generateGuesses(): File "/vol0004/ra010009/a04199/petsc/config/BuildSystem/config/package.py", line 478, in generateGuesses d = self.checkDownload() File "/vol0004/ra010009/a04199/petsc/config/BuildSystem/config/package.py", line 612, in checkDownload return self.getInstallDir() File "/vol0004/ra010009/a04199/petsc/config/BuildSystem/config/package.py", line 367, in getInstallDir installDir = self.Install() File "/vol0004/ra010009/a04199/petsc/config/BuildSystem/config/package.py", line 1792, in Install raise RuntimeError('Error configuring '+self.PACKAGE+' with cmake') ================================================================================ Finishing configure run at Thu, 15 Apr 2021 07:30:23 +0900 ================================================================================