Executing: uname -s stdout: Linux ================================================================================ ================================================================================ Starting configure run at Wed, 14 Apr 2021 20:35:04 +0900 Configure Options: --configModules=PETSc.Configure --optionsModule=config.compilerOptions CC=mpifccpx CXX=mpiFCCpx CFLAGS="-L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack" CXXFLAGS="-L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack" COPTFLAGS=-Kfast CXXOPTFLAGS=-Kfast --with-fc=0 --package-prefix-hash=/home/ra010009/a04199/petsc-hash-pkgs --with-batch=1 --with-shared-libraries=yes --with-debugging=no --with-64-bit-indices=1 --download-p4est --download-zlib --download-kokkos --download-kokkos-kernels --with-make-np=8 PETSC_ARCH=arch-fugaku-fujitsu Working directory: /vol0004/ra010009/a04199/petsc Machine platform: uname_result(system='Linux', node='fn01sv05', release='4.18.0-193.el8.x86_64', version='#1 SMP Fri Mar 27 14:35:58 UTC 2020', machine='x86_64', processor='x86_64') Python version: 3.6.8 (default, Dec 5 2019, 15:45:45) [GCC 8.3.1 20191121 (Red Hat 8.3.1-5)] ================================================================================ Environmental variables LD_LIBRARY_PATH=/opt/FJSVxtclanga/tcsds-1.2.31/lib64:/vol0001/apps/arm-lib/arm-linux-compiler-20.1_Generic-AArch64_RHEL-7_aarch64-linux/lib:/vol0001/apps/arm-lib/arm-linux-compiler-20.1_Generic-AArch64_RHEL-7_aarch64-linux/lib/clang/9.0.1/armpl_links/lib:/vol0001/apps/arm-lib/armpl-20.1.0_A64FX_RHEL-7_arm-linux-compiler_20.1_aarch64-linux/lib:/vol0001/apps/arm-lib/gcc-9.2.0_Generic-AArch64_RHEL-7_aarch64-linux/lib64 LS_COLORS=rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;05;37;41:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.m4a=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.oga=01;36:*.opus=01;36:*.spx=01;36:*.xspf=01;36: SSH_CONNECTION=68.37.206.249 61396 134.160.188.29 22 MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LANG=en_US.utf8 HISTCONTROL=ignoredups DISPLAY=localhost:15.0 OPENSSH=/opt/local/openssh HOSTNAME=fn01sv05 PATH_modshare=/opt/FJSVxtclanga/tcsds-1.2.31/bin:1:/bin:1:/usr/sbin:1:/usr/bin:1:/usr/local/sbin:1:/opt/local/openssh/bin:1:/usr/share/Modules/bin:1:/usr/local/bin:1 LOADEDMODULES_modshare=lang/tcsds-1.2.31:1 PETSC_ARCH=arch-ci-linux-gcc-opt S_COLORS=auto LD_LIBRARY_PATH_modshare=/opt/FJSVxtclanga/tcsds-1.2.31/lib64:1 XDG_SESSION_ID=894689 MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl USER=a04199 ENV=/usr/share/Modules/init/profile.sh FJSVXTCLANGA=/opt/FJSVxtclanga/tcsds-1.2.31 PWD=/home/ra010009/a04199/petsc HOME=/home/ra010009/a04199 GIT_PS1_SHOWDIRTYSTATE=1 SSH_CLIENT=68.37.206.249 61396 22 BASH_ENV=/usr/share/Modules/init/bash _LMFILES__modshare=/work/Fugaku-environment/modulefiles/lang/tcsds-1.2.31:1 TMPDIR=/home/ra010009/a04199 LOADEDMODULES=lang/tcsds-1.2.31 GIT_PS1_SHOWUPSTREAM=auto SSH_TTY=/dev/pts/2 MAIL=/var/spool/mail/a04199 TERM=xterm SHELL=/bin/bash MANPATH_modshare=:1:/opt/FJSVxtclanga/tcsds-1.2.31/man:1 SHLVL=1 MANPATH=/opt/FJSVxtclanga/tcsds-1.2.31/man: MODULEPATH=/work/Fugaku-environment/modulefiles LOGNAME=a04199 DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/14199/bus XDG_RUNTIME_DIR=/run/user/14199 MODULEPATH_modshare=/work/Fugaku-environment/modulefiles:1 PATH=/opt/FJSVxtclanga/tcsds-1.2.31/bin:/opt/local/openssh/bin:/usr/share/Modules/bin:/opt/local/openssh/bin:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/home/ra010009/a04199/.local/bin:/home/ra010009/a04199/bin _LMFILES_=/work/Fugaku-environment/modulefiles/lang/tcsds-1.2.31 PS1=\A\[\033[;1m\]\[\033[35m\]$(ret=$?; [ $ret -ne 0 ] && echo -n " $ret")\[\033[;0m\] \[\033[35m\]$(__git_ps1 '%s') \[\033[32m\]\w\[\033[0m\]\$ MODULESHOME=/usr/share/Modules PETSC_DIR=/home/ra010009/a04199/petsc HISTSIZE=1000 LESSOPEN=||/usr/bin/lesspipe.sh %s BASH_FUNC_module%%=() { _moduleraw "$@" 2>&1 } BASH_FUNC_switchml%%=() { typeset swfound=1; if [ "${MODULES_USE_COMPAT_VERSION:-0}" = '1' ]; then typeset swname='main'; if [ -e /usr/share/Modules/libexec/modulecmd.tcl ]; then typeset swfound=0; unset MODULES_USE_COMPAT_VERSION; fi; else typeset swname='compatibility'; if [ -e /usr/share/Modules/libexec/modulecmd-compat ]; then typeset swfound=0; MODULES_USE_COMPAT_VERSION=1; export MODULES_USE_COMPAT_VERSION; fi; fi; if [ $swfound -eq 0 ]; then echo "Switching to Modules $swname version"; source /usr/share/Modules/init/bash; else echo "Cannot switch to Modules $swname version, command not found"; return 1; fi } BASH_FUNC__moduleraw%%=() { unset _mlre _mlIFS _mlshdbg; if [ "${MODULES_SILENT_SHELL_DEBUG:-0}" = '1' ]; then case "$-" in *v*x*) set +vx; _mlshdbg='vx' ;; *v*) set +v; _mlshdbg='v' ;; *x*) set +x; _mlshdbg='x' ;; *) _mlshdbg='' ;; esac; fi; if [ -n "${IFS+x}" ]; then _mlIFS=$IFS; fi; IFS=' '; for _mlv in ${MODULES_RUN_QUARANTINE:-}; do if [ "${_mlv}" = "${_mlv##*[!A-Za-z0-9_]}" -a "${_mlv}" = "${_mlv#[0-9]}" ]; then if [ -n "`eval 'echo ${'$_mlv'+x}'`" ]; then _mlre="${_mlre:-}${_mlv}_modquar='`eval 'echo ${'$_mlv'}'`' "; fi; _mlrv="MODULES_RUNENV_${_mlv}"; _mlre="${_mlre:-}${_mlv}='`eval 'echo ${'$_mlrv':-}'`' "; fi; done; if [ -n "${_mlre:-}" ]; then eval `eval ${_mlre}/usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl bash '"$@"'`; else eval `/usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl bash "$@"`; fi; _mlstatus=$?; if [ -n "${_mlIFS+x}" ]; then IFS=$_mlIFS; else unset IFS; fi; if [ -n "${_mlshdbg:-}" ]; then set -$_mlshdbg; fi; unset _mlre _mlv _mlrv _mlIFS _mlshdbg; return $_mlstatus } _=../arch-fugaku-fujitsu.py OLDPWD=/home/ra010009/a04199 Files in path provided by default path /opt/FJSVxtclanga/tcsds-1.2.31/bin: .default_opt_clang .help_clang_FCC .help_clang_fcc .help_frt .help_trad_FCC .help_trad_fcc FCCpx checklogpx fccpx fcvendianpx flistpx frtpx jwd_fortpx mpiFCCpx mpifccpx mpifrtpx mpijavac mpijavac.pl opal_wrapper fapppx fipppx fjdbg_summary /opt/local/openssh/bin: ssh scp ssh-add ssh-agent ssh-keygen ssh-keyscan sftp /usr/share/Modules/bin: add.modules createmodule.py createmodule.sh mkroot /opt/local/openssh/bin: ssh scp ssh-add ssh-agent ssh-keygen ssh-keyscan sftp /usr/local/bin: job_events idcheck show_affected_jobs last.rb lastfail.rb accountd accountj groupinfo jobhistory loginhistory pjstata pjstatj resourceadd resourcedel resourceinfo resourcemod userinfo set-fsgw-password /bin: nl-qdisc-delete catchsegv nl-qdisc-list gencat nl-route-add getconf nl-route-delete getent nl-route-get iconv getfacl ldd nl-route-list locale nl-rule-list localedef nl-tctree-list makedb nl-util-addr pldd trust sotruss whiptail sprof teamnl tzselect gdbm_dump alias gdbm_load bash gdbmtool bashbug efivar bashbug-64 setfacl bg ex cd unxz less command rvi fc rview fg xz awk getopts xzcat hash xzcmp jobs xzdec read vi sh xzdiff type xzegrep ulimit xzfgrep umask xzgrep unalias xzless wait xzmore xmlcatalog eqn gawk xmllint geqn tabs info gneqn gpg-error gnroff xmlwf gpic tic find groff xargs view sed grops p11-kit grotty egrep gsoelim fgrep gtbl toe grep gtroff which neqn tput file nroff cpio nl-class-list genl-ctrl-list diff cmp idiag-socket-details pic tset nf-ct-add nl-classid-lookup nf-ct-events post-grohtml nf-ct-list pre-grohtml nf-exp-add nl-cls-add [ nf-exp-delete preconv nf-exp-list soelim nf-log tbl arch nf-monitor troff nf-queue zsoelim nl-addr-add nl-cls-delete nl-addr-delete nl-monitor cat nl-addr-list nl-neigh-add comm nl-class-add nl-neigh-delete nl-class-delete nl-cls-list nl-neigh-list nl-fib-lookup nl-neightbl-list nl-link-enslave nl-link-stats cp nl-link-ifindex2name nl-pktloc-lookup nl-link-list nl-list-caches cut nl-link-name2ifindex nl-qdisc-add date nl-link-release chacl nl-link-set nl-list-sockets dd keyctl sha512sum diff3 sha384sum sdiff shred run-parts shuf top lessecho sleep lesskey sort w lesspipe.sh split ipcalc stat g13 captoinfo stdbuf clear stty gpg infocmp sum gpg2 infotocap sync gpgv reset tac cal pydoc3.6 tail chrt pyvenv-3.6 unversioned-python tee col b2sum test i386 base32 timeout base64 touch basename tr ipcs chcon true kill chgrp truncate chmod tsort chown tty last cksum uname csplit zless df zmore dir unexpand dircolors uniq look dirname znew du unlink echo kmod env users expand vdir lsns expr wc mesg factor who more false pwmake fmt whoami fold yes raw groups fips-mode-setup head fips-finish-install hostid pwscore id gpasswd install ca-legacy join update-ca-trust link csslint-0.6 ln chage logname free ls lastlog md5sum newgidmap mkdir newgrp mkfifo newuidmap mknod sg rev mktemp pgrep mv gio su nice pidof nl gapplication nohup gdbus nproc glib-compile-schemas numfmt pkill od gio-querymodules-64 paste gunzip pathchk gsettings pinky pmap pr gzexe printenv gzip ul printf ps ptx pwdx pwd zcat wall readlink zcmp ping realpath skill rm zdiff rmdir zegrep runcon slabtop seq zfgrep sha1sum zforce sha224sum zgrep sha256sum make-dummy-cert passwd systemd-path update-crypto-policies pflags systemd-run modulemd-validator-v1 snice tload uptime vmstat watch isosize openssl colcrt pip3 renew-dummy-cert lastb evmctl linux32 envsubst linux64 gettext logger gettext.sh login msgattrib lsblk msgcat lscpu msgcmp lsipc msgcomm lslocks msgconv lslogins msgen lsmem msgexec mcookie msgfilter mount msgfmt mountpoint msggrep namei msginit nsenter msgmerge prlimit msgunfmt rename msguniq renice ngettext colrm curl recode-sr-latin script xgettext column rpm dbus-binding-tool dmesg dnf dbus-monitor scriptreplay dbus-send lchsh setarch dbus-update-activation-environment eject chvt dbus-uuidgen chmem timedatectl dbus-cleanup-sockets setpriv dbus-daemon fallocate open dbus-run-session fincore rct dbus-test-tool setsid bond2team setterm teamd taskset teamdctl umount db_archive findmnt yum db_checkpoint uname26 db_deadlock unshare db_dump utmpdump db_dump185 flock scp db_hotbackup uuidgen db_load getopt sftp db_log_verify uuidparse db_printlog wdctl db_recover hexdump ssh db_replicate whereis db_stat write db_tuner x86_64 db_upgrade busctl db_verify coredumpctl dirmngr ionice sudo dirmngr-client hostnamectl gpg-agent ipcmk man gpg-connect-agent journalctl gpg-zip localectl gpgconf ipcrm tmon gpgparsemail loginctl gpgsplit resolvectl gpgv2 systemctl watchgnupg systemd-analyze lchfn systemd-cgls systemd-cat systemd-ask-password fipscheck gtar systemd-cgtop fipshmac systemd-delta ssh-keygen systemd-detect-virt mokutil systemd-escape quota systemd-firstboot quotasync systemd-inhibit python3.6m psfgettable systemd-machine-id-setup ndptool systemd-mount brotli systemd-notify nm-online systemd-resolve pip-3 psfxtable systemd-socket-activate easy_install-3 systemd-stdio-bridge nmcli systemd-sysusers rpm2archive systemd-tmpfiles python3 rpcbind systemd-tty-ask-password-agent rpm2cpio systemd-umount rpmdb grub2-editenv pydoc3 resizecons grub2-mkpasswd-pbkdf2 rpcinfo bootctl rpmkeys kernel-install rpmquery systemd-hwdb dnf-3 udevadm rpmverify linux-boot-prober rhn_register os-prober grub2-file grub2-fstest grub2-menulst2cfg grub2-glue-efi grub2-mkimage grub2-kbdcomp grub2-mkrelpath grub2-mkfont grub2-script-check grub2-mklayout secon grub2-mknetdir semodule_expand grub2-mkrescue semodule_link grub2-mkstandalone semodule_package grub2-syslinux2cfg kdumpctl pkaction dumpkeys pkcheck kbd_mode pkexec loadkeys pkttyagent pydoc-3 setkeycodes pkla-admin-identities pyvenv-3 setleds pkla-check-authorization setfont tracepath semodule_unpackage consolehelper unicode_start authselect usleep unicode_stop pyinotify easy_install-3.6 funzip tar sha1hmac sha224hmac sha256hmac sha384hmac sha512hmac deallocvt dracut fgconsole lsinitrd getkeycodes mkinitrd kbdinfo plymouth kbdrate cronnext loadunimap crontab pip-3.6 setmetamode sss_ssh_authorizedkeys pip3.6 setvtrgb sss_ssh_knownhostsproxy mapscrn dbxtool openvt pchrt ptaskset psfaddtable python3.6 modulemd-validator psfstriptable showconsolefont showkey vlock rhsm-debug rhsmcertd subscription-manager nmtui nmtui-connect nmtui-edit nmtui-hostname rsyslog-recover-qi.pl rngtest firewall-cmd firewall-offline-cmd ssh-add ssh-agent ssh-copy-id ssh-keyscan aulast aulastlog ausyscall auvirt ipmitool chronyc cvtsudoers sudoedit sudoreplay apropos catman lexgrog mandb manpath whatis chattr lsattr centrino-decode cpupower gpio-event-mon gpio-hammer iio_event_monitor iio_generic_buffer intel-speed-select kvm_stat lsgpio lsiio powernow-k8-decode turbostat x86_energy_perf_policy rescan-scsi-bus.sh scsi-rescan scsi_logging_level scsi_mandat scsi_readcap scsi_ready scsi_satl scsi_start scsi_stop scsi_temperature sg_bg_ctl sg_compare_and_write sg_copy_results sg_dd sg_decode_sense sg_emc_trespass sg_format sg_get_config sg_get_lba_status sg_ident sg_inq sg_logs sg_luns sg_map sg_map26 sg_modes sg_opcodes sg_persist sg_prevent sg_raw sg_rbuf sg_rdac sg_read sg_read_attr sg_read_block_limits sg_read_buffer sg_read_long sg_readcap sg_reassign sg_referrals sg_rep_zones sg_requests sg_reset sg_reset_wp sg_rmsn sg_rtpg sg_safte sg_sanitize sg_sat_identify sg_sat_phy_event sg_sat_read_gplog sg_sat_set_features sg_scan sg_seek sg_senddiag sg_ses sg_ses_microcode sg_start sg_stpg sg_stream_ctl sg_sync sg_test_rwbuf sg_timestamp sg_turs sg_unmap sg_verify sg_vpd sg_wr_mode sg_write_buffer sg_write_long sg_write_same sg_write_verify sg_write_x sg_xcopy sg_zone sginfo sgm_dd sgp_dd rsync unzipsfx zipgrep unzip zipinfo dnsdomainname domainname hostname nisdomainname ypdomainname lsscsi addr2line svrmGUI ar size perl as cpp perl5.26.3 c++filt encguess dwp pip2 piconv elfedit perldoc gprof pod2usage pjacl pod2man pjalter pod2text pjcheckf tclsh pjdel tclsh8.6 pjhold autoexpect pjmail dislocate pjrls expect pjshowrsc ftp-rfc pjshut kibitz pjsig lpunlock pjstat mkpasswd pjsub passmass pjwait rftp mpiexec.tcs_intel rlogin-cwd pjaexe timed-read pjexe timed-run pjpbind unbuffer pjrsh weather pjshowip xkibitz plestat gmake plexec make ld.bfd wget ld.gold dltest nm pcp isql objcopy iusql objdump odbc_config ranlib odbcinst readelf slencheck ld setup-nsssysinit strings strip c89 eu-ar setup-nsssysinit.sh c99 eu-elfcmp json_reformat gcov-tool json_verify gcc zstd pip-2 bunzip2 pip-2.7 bzcat pip2.7 cc eu-elflint easy_install-2 gcc-ar h2ph easy_install-2.7 bzcmp pydoc2 bzdiff pydoc2.7 bzegrep python2 bzfgrep python2.7 bzgrep dbpmda bzip2 pcp2csv bzip2recover pmafm bzless pmdate bzmore pmdiff gcore pmdumplog gdb dwz pmevent gstack pmfind pstack pmgenmap cifsiostat pmie iostat pmie2col mpstat pmieconf pidstat pminfo sadf h2xs pmjson sar cpan pmlc tapestat pmlogcheck crash pmlogconf gcc-nm wish pmlogextract ltrace pmlogger trace-cmd pmloglabel strace pmlogmv strace-log-merge pmlogsize gcc-ranlib f95 pmlogsummary ed lsof pmprobe red csh pmpython bc tcsh pmseries dc i2c pmsocks DumpEnvChk_ctl pmstat xsubpp pmstore prove pmtrace shasum pmval json_pp dstat zipdetails pmiostat pod2html pmrep fc-cache ncat nc fc-cache-64 guild fc-cat guile fc-conflist guile-tools fc-list guile2 gcov eu-nm guile2-tools gcov-dump mcra gdb-add-index fc-match stap-merge fc-pattern stap-report fc-query stapbpf fc-scan stapdyn fc-validate staprun crc32 stapsh eu-objdump zip corelist zipcloak update-mime-database zipnote dtrace zipsplit ptar mst stap ptardiff stap-prep ptargrep xsltproc patch pkgconf eu-addr2line pkg-config cairo-sphinx eu-ranlib x86_64-redhat-linux-gnu-pkg-config x86_64-redhat-linux-gcc x86_64-redhat-linux-gcc-8 gdk-pixbuf-query-loaders-64 gdk-pixbuf-thumbnailer gtk-update-icon-cache eu-elfclassify eu-elfcompress eu-findtextrel eu-make-debug-archive eu-readelf eu-size eu-stack eu-strings eu-strip eu-unstrip pzstd unzstd zstdcat zstdgrep zstdless zstdmt pl2pm splain perlbug perlthanks podselect podchecker ib_write_lat gr2fonttest raw_ethernet_bw fribidi raw_ethernet_fs_rate pango-list raw_ethernet_lat pango-view mstconfig annocheck mstcongestion built-by mstflint check-abi mstfwreset hardened rdma_xclient m4 run-on-binaries-in mstfwtrace perlivp mstmcra instmodsh mstmread libnetcfg mstmtserver enc2xs mstmwrite config_data rdma_xserver git cpan-mirrors mstprivhost gendiff mstregdump rpmbuild mstresourcedump rpmspec lfs_migrate lfs gtk-query-immodules-2.0-64 rcopy mlxdump_ext update-gtk-immodules mstvpd wish8.6 dimax_init gfortran flint memhog riostream phar migratepages flint_ext migspeed fwtrace numactl itrace numademo mdevices_info numastat rping php mlnx_conf_mgr.sh rdma_client mlxfwmanager mlnx_interface_mgr.sh rstream erb mlnx_dump_parser mft_uninstall.sh mlnx_perf mget_temp mlnx_qos mget_temp_ext mlx_fs_dump minit tc_wrap.py ucmatose ruby mpi-selector udaddy ab mpi-selector-menu udpong xxd hca_self_test.ofed mlx_fpga ofed_info ib_atomic_bw lua ofed_rpm_info ib_atomic_lat ibv_asyncwatch mlx_fpga_ext ibv_devices mlxburn ibv_devinfo ib_read_bw luac ibv_rc_pingpong ib_read_lat java ibv_srq_pingpong ib_send_bw jjs ibv_uc_pingpong ib_send_lat rmid ibv_ud_pingpong ib_write_bw jmod ibv_xsrq_pingpong mlxcables ibsim mlxcables_ext ib_acme mlxconfig cmtime mlxdump mckey rdma_server mlxfwreset raw_ethernet_burst_lat run_perftest_loopback run_perftest_multi_devices mlxfwstress mlxfwstress_ext mlxgearbox mlxi2c mlxlink mlxlink_ext mlxmcg mlxmdio mlxpci mlxphyburn mlxprivhost mlxreg mlxreg_ext mlxtrace mlxtrace_ext mlxuptime mlxvpd mremote mst_cable mst_ib_add mstdump mstop mtserver pckt_drop resourcedump resourceparse wqdump wqdump_ext dump2psl.pl dump2slvl.pl ibcongest ibdiagm.sh ibdiagnet ibdiagnet_csv2xml.py ibdiagpath ibdmchk ibdmtr ibgenperm ibnetsplit ibnlparse ibtopodiff ibdump vpi_tcpdump ucx_info ucx_perftest ucx_read_profile llio_transfer fefs_failover fefsstatd pcre2-config llobdstat checksctp llstat sctp_darn plot-llstat sctp_status aserver sctp_test autoconf withsctp autoheader libpng-config autom4te libpng16-config autoreconf png-fix-itxt autoscan pngfix autoupdate compile_et ifnames gss-client aclocal php-cgi jar aclocal-1.16 krb5-config automake phpize jcmd automake-1.16 sim_client hunspell uuclient secret-tool autopoint notify-send htdbm jdb gst-inspect-1.0 htdigest jfr gst-launch-1.0 htpasswd jmap gst-stats-1.0 httxt2dbm jps gst-typefind-1.0 logresolve rmic git-receive-pack gettextize git-shell desktop-file-edit git-upload-archive desktop-file-install git-upload-pack bwrap ccmake ttmkfdir ccmake3 dbilogstrip cmake dbiprof cmake3 orc-bugreport cpack m17n-conv cpack3 dotlockfile ctest ebrowse ctest3 emacsclient otfdump etags.emacs otflist gctags otftobdf pack200 otfview rmiregistry bdftopcf unpack200 fonttosfnt ispell mkfontdir aspell mkfontscale precat ucs2any phar.phar preunzip xorg-x11-fonts-update-dirs keytool run-with-aspell desktop-file-validate update-desktop-database prezip prezip-bin ipmi_ui spell fixcvsdiff nkf word-list-compress ipmicmd enchant-2 flipdiff X enchant-lsmod-2 ipmish broadwayd openipmi_eventd gtk-launch editdiff myproxy-info gtk-query-immodules-3.0-64 grepdiff Xorg WebKitWebDriver openipmicmd emacs-26.1 javac jaotc jlink jhsdb jarsigner javadoc javap jconsole jdeps jdeprscan jimage jinfo jrunscript jshell jstack jstat jstatd serialver openipmish fftw-wisdom interdiff cvt fftw-wisdom-to-conf lsdiff gtf fftwf-wisdom recountdiff gem fftwl-wisdom rediff lpr fftwq-wisdom rmcp_ping cups-config solterm rvim myproxy-init vim agentxtrap vimdiff snmpdf vimtutor snmpconf purge encode_keychange squidclient gsiscp c++ gsisftp g++ espdiff gsissh x86_64-redhat-linux-c++ filterdiff arpaname x86_64-redhat-linux-g++ splitdiff lp intltool-extract unwrapdiff lpq intltool-merge doxygen lprm intltool-prepare diffstat chfn intltool-update snmpbulkget intltoolize ctags chsh freetype-config byacc spax ncurses6-config yacc delv ncursesw6-config nslookup svn snmpbulkwalk svnadmin emacs pax svndumpfilter snmpdelta svnfsfs snmpget svnlook snmpgetnext svnrdump snmpinform svnserve snmpnetstat svnsync snmpping svnversion snmpps libtool snmpset libtoolize snmpstatus bison snmptable flex snmptest flex++ dig lex snmptls cscope net-snmp-create-v3-user cscope-indexer host ocs snmptop time snmpusm rpmsign snmptranslate envml modulecmd snmptrap swig snmpvacm combinediff snmpwalk dehtmldiff etags gsissh-keygen pdfdetach driverless grid-cert-diagnostics pdfsig srun grid-proxy-destroy pdftocairo Xvnc grid-proxy-info pdftohtml grid-proxy-init pdffonts foomatic-rip myproxy-change-pass-phrase pdftoppm myproxy-destroy pdfimages screen myproxy-get-delegation pdfinfo hwloc-bind myproxy-get-trustroots pdftops myproxy-logon pdftotext myproxy-retrieve pdfunite myproxy-store idn nsupdate iceauth xauth python pdfseparate hwloc-calc libwacom-list-local-devices sessreg setxkbmap showrgb xkbcomp xgamma libinput xhost killall xinput peekfd xkill prtstat xmodmap pslog xrandr pstree xrdb pstree.x11 pod2latex oddjob_request xrefresh ldapadd xset ldapcompare xsetpointer ldapdelete xsetroot ldapexop xstdcmap ldapmodify eps2eps ldapmodrdn ghostscript ldappasswd gs ldapsearch gsnd ldapurl pdf2dsc ldapwhoami pdf2ps cancel.cups ps2ascii lp.cups ps2epsi lpoptions ps2pdf lpq.cups ps2pdf12 lpr.cups ps2pdf13 lprm.cups ps2pdf14 lpstat.cups lpstat cancel GET hwloc-diff mailq.postfix HEAD hwloc-info newaliases.postfix POST hwloc-ls rmail.postfix mailq newaliases rmail ps2pdfwr mail ps2ps mailx ps2ps2 Mail cupstestdsc nail hwloc-patch at hwloc-ps atq cupstestppd atrm ppdc batch lwp-download xdg-desktop-icon lwp-dump xdg-desktop-menu ppdhtml xdg-email lwp-mirror xdg-icon-resource ppdi xdg-mime ppdmerge xdg-open lwp-request xdg-screensaver paperconf xdg-settings mcpp filebeat redhat_lsb_init ppdpo lsb_release run-singularity munge hwloc-annotate hwloc-assembler hwloc-assembler-remote hwloc-compress-dir hwloc-distances hwloc-distrib hwloc-gather-topology lstopo-no-graphics remunge unmunge sacct sacctmgr salloc sattach sbatch sbcast scancel scontrol scrontab sdiag sgather sinfo sprio squeue sreport sshare sstat strigger sview singularity vncviewer startx xinit vncconfig vncpasswd vncserver vncserver_wrapper x0vncserver evince evince-previewer evince-thumbnailer /usr/bin: nl-qdisc-delete catchsegv nl-qdisc-list gencat nl-route-add getconf nl-route-delete getent nl-route-get iconv getfacl ldd nl-route-list locale nl-rule-list localedef nl-tctree-list makedb nl-util-addr pldd trust sotruss whiptail sprof teamnl tzselect gdbm_dump alias gdbm_load bash gdbmtool bashbug efivar bashbug-64 setfacl bg ex cd unxz less command rvi fc rview fg xz awk getopts xzcat hash xzcmp jobs xzdec read vi sh xzdiff type xzegrep ulimit xzfgrep umask xzgrep unalias xzless wait xzmore xmlcatalog eqn gawk xmllint geqn tabs info gneqn gpg-error gnroff xmlwf gpic tic find groff xargs view sed grops p11-kit grotty egrep gsoelim fgrep gtbl toe grep gtroff which neqn tput file nroff cpio nl-class-list genl-ctrl-list diff cmp idiag-socket-details pic tset nf-ct-add nl-classid-lookup nf-ct-events post-grohtml nf-ct-list pre-grohtml nf-exp-add nl-cls-add [ nf-exp-delete preconv nf-exp-list soelim nf-log tbl arch nf-monitor troff nf-queue zsoelim nl-addr-add nl-cls-delete nl-addr-delete nl-monitor cat nl-addr-list nl-neigh-add comm nl-class-add nl-neigh-delete nl-class-delete nl-cls-list nl-neigh-list nl-fib-lookup nl-neightbl-list nl-link-enslave nl-link-stats cp nl-link-ifindex2name nl-pktloc-lookup nl-link-list nl-list-caches cut nl-link-name2ifindex nl-qdisc-add date nl-link-release chacl nl-link-set nl-list-sockets dd keyctl sha512sum diff3 sha384sum sdiff shred run-parts shuf top lessecho sleep lesskey sort w lesspipe.sh split ipcalc stat g13 captoinfo stdbuf clear stty gpg infocmp sum gpg2 infotocap sync gpgv reset tac cal pydoc3.6 tail chrt pyvenv-3.6 unversioned-python tee col b2sum test i386 base32 timeout base64 touch basename tr ipcs chcon true kill chgrp truncate chmod tsort chown tty last cksum uname csplit zless df zmore dir unexpand dircolors uniq look dirname znew du unlink echo kmod env users expand vdir lsns expr wc mesg factor who more false pwmake fmt whoami fold yes raw groups fips-mode-setup head fips-finish-install hostid pwscore id gpasswd install ca-legacy join update-ca-trust link csslint-0.6 ln chage logname free ls lastlog md5sum newgidmap mkdir newgrp mkfifo newuidmap mknod sg rev mktemp pgrep mv gio su nice pidof nl gapplication nohup gdbus nproc glib-compile-schemas numfmt pkill od gio-querymodules-64 paste gunzip pathchk gsettings pinky pmap pr gzexe printenv gzip ul printf ps ptx pwdx pwd zcat wall readlink zcmp ping realpath skill rm zdiff rmdir zegrep runcon slabtop seq zfgrep sha1sum zforce sha224sum zgrep sha256sum make-dummy-cert passwd systemd-path update-crypto-policies pflags systemd-run modulemd-validator-v1 snice tload uptime vmstat watch isosize openssl colcrt pip3 renew-dummy-cert lastb evmctl linux32 envsubst linux64 gettext logger gettext.sh login msgattrib lsblk msgcat lscpu msgcmp lsipc msgcomm lslocks msgconv lslogins msgen lsmem msgexec mcookie msgfilter mount msgfmt mountpoint msggrep namei msginit nsenter msgmerge prlimit msgunfmt rename msguniq renice ngettext colrm curl recode-sr-latin script xgettext column rpm dbus-binding-tool dmesg dnf dbus-monitor scriptreplay dbus-send lchsh setarch dbus-update-activation-environment eject chvt dbus-uuidgen chmem timedatectl dbus-cleanup-sockets setpriv dbus-daemon fallocate open dbus-run-session fincore rct dbus-test-tool setsid bond2team setterm teamd taskset teamdctl umount db_archive findmnt yum db_checkpoint uname26 db_deadlock unshare db_dump utmpdump db_dump185 flock scp db_hotbackup uuidgen db_load getopt sftp db_log_verify uuidparse db_printlog wdctl db_recover hexdump ssh db_replicate whereis db_stat write db_tuner x86_64 db_upgrade busctl db_verify coredumpctl dirmngr ionice sudo dirmngr-client hostnamectl gpg-agent ipcmk man gpg-connect-agent journalctl gpg-zip localectl gpgconf ipcrm tmon gpgparsemail loginctl gpgsplit resolvectl gpgv2 systemctl watchgnupg systemd-analyze lchfn systemd-cgls systemd-cat systemd-ask-password fipscheck gtar systemd-cgtop fipshmac systemd-delta ssh-keygen systemd-detect-virt mokutil systemd-escape quota systemd-firstboot quotasync systemd-inhibit python3.6m psfgettable systemd-machine-id-setup ndptool systemd-mount brotli systemd-notify nm-online systemd-resolve pip-3 psfxtable systemd-socket-activate easy_install-3 systemd-stdio-bridge nmcli systemd-sysusers rpm2archive systemd-tmpfiles python3 rpcbind systemd-tty-ask-password-agent rpm2cpio systemd-umount rpmdb grub2-editenv pydoc3 resizecons grub2-mkpasswd-pbkdf2 rpcinfo bootctl rpmkeys kernel-install rpmquery systemd-hwdb dnf-3 udevadm rpmverify linux-boot-prober rhn_register os-prober grub2-file grub2-fstest grub2-menulst2cfg grub2-glue-efi grub2-mkimage grub2-kbdcomp grub2-mkrelpath grub2-mkfont grub2-script-check grub2-mklayout secon grub2-mknetdir semodule_expand grub2-mkrescue semodule_link grub2-mkstandalone semodule_package grub2-syslinux2cfg kdumpctl pkaction dumpkeys pkcheck kbd_mode pkexec loadkeys pkttyagent pydoc-3 setkeycodes pkla-admin-identities pyvenv-3 setleds pkla-check-authorization setfont tracepath semodule_unpackage consolehelper unicode_start authselect usleep unicode_stop pyinotify easy_install-3.6 funzip tar sha1hmac sha224hmac sha256hmac sha384hmac sha512hmac deallocvt dracut fgconsole lsinitrd getkeycodes mkinitrd kbdinfo plymouth kbdrate cronnext loadunimap crontab pip-3.6 setmetamode sss_ssh_authorizedkeys pip3.6 setvtrgb sss_ssh_knownhostsproxy mapscrn dbxtool openvt pchrt ptaskset psfaddtable python3.6 modulemd-validator psfstriptable showconsolefont showkey vlock rhsm-debug rhsmcertd subscription-manager nmtui nmtui-connect nmtui-edit nmtui-hostname rsyslog-recover-qi.pl rngtest firewall-cmd firewall-offline-cmd ssh-add ssh-agent ssh-copy-id ssh-keyscan aulast aulastlog ausyscall auvirt ipmitool chronyc cvtsudoers sudoedit sudoreplay apropos catman lexgrog mandb manpath whatis chattr lsattr centrino-decode cpupower gpio-event-mon gpio-hammer iio_event_monitor iio_generic_buffer intel-speed-select kvm_stat lsgpio lsiio powernow-k8-decode turbostat x86_energy_perf_policy rescan-scsi-bus.sh scsi-rescan scsi_logging_level scsi_mandat scsi_readcap scsi_ready scsi_satl scsi_start scsi_stop scsi_temperature sg_bg_ctl sg_compare_and_write sg_copy_results sg_dd sg_decode_sense sg_emc_trespass sg_format sg_get_config sg_get_lba_status sg_ident sg_inq sg_logs sg_luns sg_map sg_map26 sg_modes sg_opcodes sg_persist sg_prevent sg_raw sg_rbuf sg_rdac sg_read sg_read_attr sg_read_block_limits sg_read_buffer sg_read_long sg_readcap sg_reassign sg_referrals sg_rep_zones sg_requests sg_reset sg_reset_wp sg_rmsn sg_rtpg sg_safte sg_sanitize sg_sat_identify sg_sat_phy_event sg_sat_read_gplog sg_sat_set_features sg_scan sg_seek sg_senddiag sg_ses sg_ses_microcode sg_start sg_stpg sg_stream_ctl sg_sync sg_test_rwbuf sg_timestamp sg_turs sg_unmap sg_verify sg_vpd sg_wr_mode sg_write_buffer sg_write_long sg_write_same sg_write_verify sg_write_x sg_xcopy sg_zone sginfo sgm_dd sgp_dd rsync unzipsfx zipgrep unzip zipinfo dnsdomainname domainname hostname nisdomainname ypdomainname lsscsi addr2line svrmGUI ar size perl as cpp perl5.26.3 c++filt encguess dwp pip2 piconv elfedit perldoc gprof pod2usage pjacl pod2man pjalter pod2text pjcheckf tclsh pjdel tclsh8.6 pjhold autoexpect pjmail dislocate pjrls expect pjshowrsc ftp-rfc pjshut kibitz pjsig lpunlock pjstat mkpasswd pjsub passmass pjwait rftp mpiexec.tcs_intel rlogin-cwd pjaexe timed-read pjexe timed-run pjpbind unbuffer pjrsh weather pjshowip xkibitz plestat gmake plexec make ld.bfd wget ld.gold dltest nm pcp isql objcopy iusql objdump odbc_config ranlib odbcinst readelf slencheck ld setup-nsssysinit strings strip c89 eu-ar setup-nsssysinit.sh c99 eu-elfcmp json_reformat gcov-tool json_verify gcc zstd pip-2 bunzip2 pip-2.7 bzcat pip2.7 cc eu-elflint easy_install-2 gcc-ar h2ph easy_install-2.7 bzcmp pydoc2 bzdiff pydoc2.7 bzegrep python2 bzfgrep python2.7 bzgrep dbpmda bzip2 pcp2csv bzip2recover pmafm bzless pmdate bzmore pmdiff gcore pmdumplog gdb dwz pmevent gstack pmfind pstack pmgenmap cifsiostat pmie iostat pmie2col mpstat pmieconf pidstat pminfo sadf h2xs pmjson sar cpan pmlc tapestat pmlogcheck crash pmlogconf gcc-nm wish pmlogextract ltrace pmlogger trace-cmd pmloglabel strace pmlogmv strace-log-merge pmlogsize gcc-ranlib f95 pmlogsummary ed lsof pmprobe red csh pmpython bc tcsh pmseries dc i2c pmsocks DumpEnvChk_ctl pmstat xsubpp pmstore prove pmtrace shasum pmval json_pp dstat zipdetails pmiostat pod2html pmrep fc-cache ncat nc fc-cache-64 guild fc-cat guile fc-conflist guile-tools fc-list guile2 gcov eu-nm guile2-tools gcov-dump mcra gdb-add-index fc-match stap-merge fc-pattern stap-report fc-query stapbpf fc-scan stapdyn fc-validate staprun crc32 stapsh eu-objdump zip corelist zipcloak update-mime-database zipnote dtrace zipsplit ptar mst stap ptardiff stap-prep ptargrep xsltproc patch pkgconf eu-addr2line pkg-config cairo-sphinx eu-ranlib x86_64-redhat-linux-gnu-pkg-config x86_64-redhat-linux-gcc x86_64-redhat-linux-gcc-8 gdk-pixbuf-query-loaders-64 gdk-pixbuf-thumbnailer gtk-update-icon-cache eu-elfclassify eu-elfcompress eu-findtextrel eu-make-debug-archive eu-readelf eu-size eu-stack eu-strings eu-strip eu-unstrip pzstd unzstd zstdcat zstdgrep zstdless zstdmt pl2pm splain perlbug perlthanks podselect podchecker ib_write_lat gr2fonttest raw_ethernet_bw fribidi raw_ethernet_fs_rate pango-list raw_ethernet_lat pango-view mstconfig annocheck mstcongestion built-by mstflint check-abi mstfwreset hardened rdma_xclient m4 run-on-binaries-in mstfwtrace perlivp mstmcra instmodsh mstmread libnetcfg mstmtserver enc2xs mstmwrite config_data rdma_xserver git cpan-mirrors mstprivhost gendiff mstregdump rpmbuild mstresourcedump rpmspec lfs_migrate lfs gtk-query-immodules-2.0-64 rcopy mlxdump_ext update-gtk-immodules mstvpd wish8.6 dimax_init gfortran flint memhog riostream phar migratepages flint_ext migspeed fwtrace numactl itrace numademo mdevices_info numastat rping php mlnx_conf_mgr.sh rdma_client mlxfwmanager mlnx_interface_mgr.sh rstream erb mlnx_dump_parser mft_uninstall.sh mlnx_perf mget_temp mlnx_qos mget_temp_ext mlx_fs_dump minit tc_wrap.py ucmatose ruby mpi-selector udaddy ab mpi-selector-menu udpong xxd hca_self_test.ofed mlx_fpga ofed_info ib_atomic_bw lua ofed_rpm_info ib_atomic_lat ibv_asyncwatch mlx_fpga_ext ibv_devices mlxburn ibv_devinfo ib_read_bw luac ibv_rc_pingpong ib_read_lat java ibv_srq_pingpong ib_send_bw jjs ibv_uc_pingpong ib_send_lat rmid ibv_ud_pingpong ib_write_bw jmod ibv_xsrq_pingpong mlxcables ibsim mlxcables_ext ib_acme mlxconfig cmtime mlxdump mckey rdma_server mlxfwreset raw_ethernet_burst_lat run_perftest_loopback run_perftest_multi_devices mlxfwstress mlxfwstress_ext mlxgearbox mlxi2c mlxlink mlxlink_ext mlxmcg mlxmdio mlxpci mlxphyburn mlxprivhost mlxreg mlxreg_ext mlxtrace mlxtrace_ext mlxuptime mlxvpd mremote mst_cable mst_ib_add mstdump mstop mtserver pckt_drop resourcedump resourceparse wqdump wqdump_ext dump2psl.pl dump2slvl.pl ibcongest ibdiagm.sh ibdiagnet ibdiagnet_csv2xml.py ibdiagpath ibdmchk ibdmtr ibgenperm ibnetsplit ibnlparse ibtopodiff ibdump vpi_tcpdump ucx_info ucx_perftest ucx_read_profile llio_transfer fefs_failover fefsstatd pcre2-config llobdstat checksctp llstat sctp_darn plot-llstat sctp_status aserver sctp_test autoconf withsctp autoheader libpng-config autom4te libpng16-config autoreconf png-fix-itxt autoscan pngfix autoupdate compile_et ifnames gss-client aclocal php-cgi jar aclocal-1.16 krb5-config automake phpize jcmd automake-1.16 sim_client hunspell uuclient secret-tool autopoint notify-send htdbm jdb gst-inspect-1.0 htdigest jfr gst-launch-1.0 htpasswd jmap gst-stats-1.0 httxt2dbm jps gst-typefind-1.0 logresolve rmic git-receive-pack gettextize git-shell desktop-file-edit git-upload-archive desktop-file-install git-upload-pack bwrap ccmake ttmkfdir ccmake3 dbilogstrip cmake dbiprof cmake3 orc-bugreport cpack m17n-conv cpack3 dotlockfile ctest ebrowse ctest3 emacsclient otfdump etags.emacs otflist gctags otftobdf pack200 otfview rmiregistry bdftopcf unpack200 fonttosfnt ispell mkfontdir aspell mkfontscale precat ucs2any phar.phar preunzip xorg-x11-fonts-update-dirs keytool run-with-aspell desktop-file-validate update-desktop-database prezip prezip-bin ipmi_ui spell fixcvsdiff nkf word-list-compress ipmicmd enchant-2 flipdiff X enchant-lsmod-2 ipmish broadwayd openipmi_eventd gtk-launch editdiff myproxy-info gtk-query-immodules-3.0-64 grepdiff Xorg WebKitWebDriver openipmicmd emacs-26.1 javac jaotc jlink jhsdb jarsigner javadoc javap jconsole jdeps jdeprscan jimage jinfo jrunscript jshell jstack jstat jstatd serialver openipmish fftw-wisdom interdiff cvt fftw-wisdom-to-conf lsdiff gtf fftwf-wisdom recountdiff gem fftwl-wisdom rediff lpr fftwq-wisdom rmcp_ping cups-config solterm rvim myproxy-init vim agentxtrap vimdiff snmpdf vimtutor snmpconf purge encode_keychange squidclient gsiscp c++ gsisftp g++ espdiff gsissh x86_64-redhat-linux-c++ filterdiff arpaname x86_64-redhat-linux-g++ splitdiff lp intltool-extract unwrapdiff lpq intltool-merge doxygen lprm intltool-prepare diffstat chfn intltool-update snmpbulkget intltoolize ctags chsh freetype-config byacc spax ncurses6-config yacc delv ncursesw6-config nslookup svn snmpbulkwalk svnadmin emacs pax svndumpfilter snmpdelta svnfsfs snmpget svnlook snmpgetnext svnrdump snmpinform svnserve snmpnetstat svnsync snmpping svnversion snmpps libtool snmpset libtoolize snmpstatus bison snmptable flex snmptest flex++ dig lex snmptls cscope net-snmp-create-v3-user cscope-indexer host ocs snmptop time snmpusm rpmsign snmptranslate envml modulecmd snmptrap swig snmpvacm combinediff snmpwalk dehtmldiff etags gsissh-keygen pdfdetach driverless grid-cert-diagnostics pdfsig srun grid-proxy-destroy pdftocairo Xvnc grid-proxy-info pdftohtml grid-proxy-init pdffonts foomatic-rip myproxy-change-pass-phrase pdftoppm myproxy-destroy pdfimages screen myproxy-get-delegation pdfinfo hwloc-bind myproxy-get-trustroots pdftops myproxy-logon pdftotext myproxy-retrieve pdfunite myproxy-store idn nsupdate iceauth xauth python pdfseparate hwloc-calc libwacom-list-local-devices sessreg setxkbmap showrgb xkbcomp xgamma libinput xhost killall xinput peekfd xkill prtstat xmodmap pslog xrandr pstree xrdb pstree.x11 pod2latex oddjob_request xrefresh ldapadd xset ldapcompare xsetpointer ldapdelete xsetroot ldapexop xstdcmap ldapmodify eps2eps ldapmodrdn ghostscript ldappasswd gs ldapsearch gsnd ldapurl pdf2dsc ldapwhoami pdf2ps cancel.cups ps2ascii lp.cups ps2epsi lpoptions ps2pdf lpq.cups ps2pdf12 lpr.cups ps2pdf13 lprm.cups ps2pdf14 lpstat.cups lpstat cancel GET hwloc-diff mailq.postfix HEAD hwloc-info newaliases.postfix POST hwloc-ls rmail.postfix mailq newaliases rmail ps2pdfwr mail ps2ps mailx ps2ps2 Mail cupstestdsc nail hwloc-patch at hwloc-ps atq cupstestppd atrm ppdc batch lwp-download xdg-desktop-icon lwp-dump xdg-desktop-menu ppdhtml xdg-email lwp-mirror xdg-icon-resource ppdi xdg-mime ppdmerge xdg-open lwp-request xdg-screensaver paperconf xdg-settings mcpp filebeat redhat_lsb_init ppdpo lsb_release run-singularity munge hwloc-annotate hwloc-assembler hwloc-assembler-remote hwloc-compress-dir hwloc-distances hwloc-distrib hwloc-gather-topology lstopo-no-graphics remunge unmunge sacct sacctmgr salloc sattach sbatch sbcast scancel scontrol scrontab sdiag sgather sinfo sprio squeue sreport sshare sstat strigger sview singularity vncviewer startx xinit vncconfig vncpasswd vncserver vncserver_wrapper x0vncserver evince evince-previewer evince-thumbnailer /usr/local/sbin: /usr/sbin: biosdecode g13-syshelp build-locale-archive pam_timestamp_check zdump lchage zic pwhistory_helper ldconfig pidof iconvconfig unix_update capsh sysctl getcap arpd fsck getpcaps bridge setcap adduser mkfs install-info chgpasswd lvm fix-info-dir ctstat chkconfig chpasswd halt alternatives groupadd init update-alternatives devlink ethtool genl sssd mksquashfs ifcfg unsquashfs lgroupadd nft ifstat ip6tables groupdel quot ip6tables-restore dmidecode lgroupdel ip6tables-restore-translate userdel ping ip6tables-save usermod rngd ip6tables-translate ip sshd iptables vigr lgroupmod iptables-apply vipw lid iptables-restore ownership lnewusers iptables-restore-translate depmod lshw iptables-save insmod iptables-translate lsmod xtables-monitor modinfo xtables-nft-multi lnstat ebtables modprobe ebtables-restore rmmod ebtables-save nstat ipset weak-modules key.dns_resolver rdma request-key routef avcstat routel getenforce rtacct getsebool cracklib-check matchpathcon cracklib-format sefcontext_compile cracklib-packer selabel_digest cracklib-unpacker selabel_lookup vpddecode lpasswd selabel_lookup_best_match useradd luseradd selabel_partial_match chroot luserdel selinux_check_access create-cracklib-dict selinuxconlist faillock selinuxdefcon mkhomedir_helper selinuxenabled pam_console_apply selinuxexeccon rtmon setenforce rtpr hdparm groupmems rtstat groupmod ss grpck tipc grpconv syspurpose grpunconv applygnupgdefaults newusers sasldblistusers2 pwck saslpasswd2 pwconv addgnupghome pwunconv blkdeactivate unix_chkpwd lusermod addpart agetty blkdiscard blkid blkzone blockdev cfdisk chcpu clock ctrlaltdel delpart fdformat fdisk findfs fsck.cramfs ifup fsck.minix fsfreeze fstrim hwclock ldattach losetup mkfs.cramfs mkfs.minix mkswap nologin partx pivot_root readprofile resizepart rfkill rtcwake runuser sfdisk sulogin swaplabel swapoff swapon switch_root wipefs zramctl semodule dmfilemapd sestatus dmsetup setfiles dmstats setsebool poweroff rpcbind reboot rpcinfo resolvconf rhn-profile-sync runlevel rhn_check-3.6 shutdown rhnsd telinit grub2-install grub2-get-kernel-settings grub2-rpm-sort grub2-set-bootflag grub2-reboot grub2-set-default genhomedircon grub2-set-password grub2-switch-to-blscfg grub2-setpassword rhn_check udevadm fixfiles grub2-ofpathname load_policy grub2-sparc64-setup rhnreg_ks-3.6 arping rhn_register-3.6 clockdiff subscription-manager ifenslave rhn-channel ping6 rhn_register rdisc rhnreg_ks tracepath spacewalk-channel tracepath6 dhclient userhelper dhclient-script virt-what grub2-mkconfig plymouth-set-default-theme kexec plymouthd makedumpfile crond mkdumprd anacron vmcore-dmesg sss_cache mount.nfs4 consoletype mount.nfs genhostid nfsdcltrack service rpc.statd gssproxy umount.nfs logrotate umount.nfs4 pethtool blkmapd pifconfig rhn-profile-sync-3.6 convertquota exportfs edquota mountstats quotacheck nfsconf quotaoff nfsconvert quotaon nfsidmap quotastats nfsiostat repquota nfsref setquota nfsstat xqmstats restorecon NetworkManager ifdown restorecon_xattr grub2-bios-setup installkernel grub2-probe rpc.gssd efibootdump spacewalk-channel-3.6 rpc.idmapd rpc.mountd rpc.nfsd rpcdebug showmount sm-notify start-statd grubby paclone pxinst pxinstd rsyslogd firewalld tuned tuned-adm auditctl auditd augenrules aureport ausearch autrace authconfig chronyd fsck.xfs mkfs.xfs xfs_admin xfs_bmap xfs_copy xfs_db iprconfig xfs_estimate xfs_freeze xfs_fsr xfs_growfs xfs_info xfs_io iprdbg xfs_logprint iprdump xfs_mdrestore iprinit xfs_metadump xfs_mkfile xfs_ncheck xfs_quota xfs_repair xfs_rtcp iprsos xfs_spaceman parted partprobe visudo lspci setpci iprupdate update-pciids accessdb irqbalance badblocks debugfs e2freefrag e2image e2undo e4crypt e4defrag filefrag fuse2fs logsave mklost+found resize2fs mke2fs dumpe2fs e2mmpstatus tune2fs mkfs.ext4 efibootmgr e2fsck fsck.ext2 fsck.ext3 fsck.ext4 mkfs.ext2 e2label mkfs.ext3 biosdevname cache_metadata_size fsadm rcaurad amCLI amDaemon cache_repair lvs _parscunit_client cache_restore _pasetbootparam thin_trim _pashowhard pluginviewer _pmexe saslauthd _pmgather testsaslauthd _pmscatter sosreport pachecker lvchange paclstmgr parscadm paconsole lvconvert padumpmgr pmrscadm paeventadm pmswaplog paledctl cache_writeback pamonitor_notice era_check pvck pamonitoradm era_dump pvs pamopluginadm pmsetjobinfo papwradm pmsetstats papwrctl pmswapstat parender era_invalidate parscunitadm era_restore vgck paserviceadm pxmrd pashowclst pxnrd pasnap pxsrd pastart padeadline pastop papjmadm pmexe pjm_sync_diskd pmgather papjmstatsadm pmscatter pjmd vgs pxeventd pdata_tools nvme pxmonitor_masterd thin_check lctl pxmonitor_slaved thin_delta ldev pxmonitor_subd pjmcmdd pxsystemadm thin_dump lst pxsystemadm_py2 thin_ls eecd pxsystemadm_py3 thin_metadata_size pxpwrwrap_monitord pjsd thin_repair lpc pmdumpjobinfo thin_restore atd pmalter lvcreate dmeventd lvdisplay cache_check lvextend cache_dump vgcfgrestore thin_rmap pmerls rdma-ndd fefs_sync vendor_pre_uninstall.sh ibqueryerrors pmjacladm ibroute pmpjmadm ibrouters pmpjmopt ibstat pmpjmsadm ibstatus pmpjmsopt ibswitches pmresume ibsysstat pmsuspend ibtracert pleio perfquery plesnap saquery pxpled lvmconfig lvmdiskscan lvmdump lvmpolld lvmsadc lvmsar lvreduce lvremove lvrename lvresize lvscan pvchange pvcreate pvdisplay pvmove pvremove pvresize pvscan vgcfgbackup sminfo vgchange smpdump vgconvert smpquery vgcreate vendstat vgdisplay ibacm vgexport opensm vgextend osmtest vgimport ibcacheedit vgimportclone sldd.sh vgmerge ibsrpdm vgmknodes run_srp_daemon vgreduce srp_daemon vgremove smparquery vgrename rshim vgscan llio_rtab vgsplit lliosnap tcpdump _fefs_mount tcpslice _fefs_purge mdadm evict_client mdmon fefs_checkstatus raid-check fefs_cqos_check.sh cocore fefs_ha fjsnap ibccconfig fjsnap_summary fefs_maintrouter mlnx-sf ibccquery mlnx_bf_configure ibclearcounters sysctl_perf_tuning ibclearerrors cma_roce_mode ibfindnodesusing.pl cma_roce_tos check_lft_balance.pl common_irq_affinity.sh ibhosts compat_gid_gen fefs_mkfs ib2ib_setup ibidsverify.pl ibdev2netdev iblinkinfo mlnx_affinity fefs_mount mlnx_tune fefs_rtab odp_stat.sh ibnetdiscover set_irq_affinity.sh dump_fts fefs_umount set_irq_affinity_bynode.sh dump_lfts.sh force_intr set_irq_affinity_cpulist.sh ibnodes setup_mr_cache.sh ibping show_counters fefs_setup show_gids node_exporter show_irq_affinity.sh dump_mfts.sh mount.lustre show_irq_affinity_hints.sh ibportstate ofed_uninstall.sh sysinfo-snapshot.py vendor_post_uninstall.sh ibaddr fefsconfig fefs_yaml2csv fefssnap ko2iblnd-probe l_getidentity ldlm_debug_upcall lhsmtool_posix ll_decode_linkea llverfs lnetctl lustre_o2ibs_config lustre_rmmod lustre_routes_config lustre_routes_conversion lustre_rsync routerstat apachectl fcgistarter htcacheclean httpd rotatelogs suexec gss-server sim_server uuserver unbound-anchor squid snmpd snmptrapd PCSysScan PrimeCollect SCConfig SCProfile SVclearLog SVreadLog eecdcp srvmagt SVforceVV biosagt busagt etheragt hdagt hpsimagt invagt meclear oemups osagt sc2agt securagt statusagt svupdateagt thragt unixagt vmeagt vmesnmpagt vvagt gsisshd ddns-confgen dnssec-checkds dnssec-coverage dnssec-dsfromkey dnssec-importkey dnssec-keyfromlabel dnssec-keygen dnssec-keymgr dnssec-revoke dnssec-settime dnssec-signzone dnssec-verify genrandom isc-hmac-fixup named-checkzone named-compilezone nsec3hash tsig-keygen unbound unbound-checkconf unbound-control unbound-control-setup unbound-host unbound-streamtcp fuser oddjobd cups-browsed lpc.cups hwloc-dump-hwdata postalias create-munge-key postcat postconf postdrop postfix postkick postlock postlog postmap postmulti postqueue postsuper reject sendmail.postfix smtp-sink smtp-source sendmail atrun lpmove redhat_lsb_trigger.x86_64 paperconfig accept cupsaccept cupsaddsmb cupsctl cupsd cupsdisable cupsenable cupsfilter cupsreject lpadmin lpinfo munged Warning accessing /home/ra010009/a04199/.local/bin gives errors: [Errno 2] No such file or directory: '/home/ra010009/a04199/.local/bin' Warning accessing /home/ra010009/a04199/bin gives errors: [Errno 2] No such file or directory: '/home/ra010009/a04199/bin' ============================================================================================= TESTING: configureExternalPackagesDir from config.framework(config/BuildSystem/config/framework.py:967) child config.utilities.macosFirewall 0.000004 ============================================================================================= TESTING: configureDebuggers from config.utilities.debuggers(config/BuildSystem/config/utilities/debuggers.py:21) Find a default debugger and determine its arguments Executing: uname -s stdout: Linux Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/gdb...not found Checking for program /opt/local/openssh/bin/gdb...not found Checking for program /usr/share/Modules/bin/gdb...not found Checking for program /opt/local/openssh/bin/gdb...not found Checking for program /usr/local/bin/gdb...not found Checking for program /bin/gdb...found Defined make macro "GDB" to "/bin/gdb" Defined "USE_DEBUGGER" to ""gdb"" Executing: uname -s stdout: Linux Defined make macro "DSYMUTIL" to "true" Executing: uname -s stdout: Linux child config.utilities.debuggers 0.012166 ============================================================================================= TESTING: configureDirectories from PETSc.options.petscdir(config/PETSc/options/petscdir.py:23) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 0 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 15 #define PETSC_VERSION_SUBMINOR 0 #define PETSC_VERSION_PATCH 0 #define PETSC_VERSION_DATE "unknown" #define PETSC_VERSION_GIT "unknown" #define PETSC_VERSION_DATE_GIT "unknown" #define PETSC_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_ PETSC_VERSION_EQ #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ child PETSc.options.petscdir 0.004093 ============================================================================================= TESTING: getDatafilespath from PETSc.options.dataFilesPath(config/PETSc/options/dataFilesPath.py:29) Checks what DATAFILESPATH should be child PETSc.options.dataFilesPath 0.000818 ============================================================================================= TESTING: configureGit from config.sourceControl(config/BuildSystem/config/sourceControl.py:24) Find the Git executable Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/git...not found Checking for program /opt/local/openssh/bin/git...not found Checking for program /usr/share/Modules/bin/git...not found Checking for program /opt/local/openssh/bin/git...not found Checking for program /usr/local/bin/git...not found Checking for program /bin/git...found Defined make macro "GIT" to "git" Executing: git --version stdout: git version 2.18.2 ============================================================================================= TESTING: configureMercurial from config.sourceControl(config/BuildSystem/config/sourceControl.py:35) Find the Mercurial executable Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/hg...not found Checking for program /opt/local/openssh/bin/hg...not found Checking for program /usr/share/Modules/bin/hg...not found Checking for program /opt/local/openssh/bin/hg...not found Checking for program /usr/local/bin/hg...not found Checking for program /bin/hg...not found Checking for program /usr/bin/hg...not found Checking for program /usr/local/sbin/hg...not found Checking for program /usr/sbin/hg...not found Checking for program /home/ra010009/a04199/.local/bin/hg...not found Checking for program /home/ra010009/a04199/bin/hg...not found Checking for program /home/ra010009/a04199/petsc/lib/petsc/bin/win32fe/hg...not found child config.sourceControl 0.007144 ============================================================================================= TESTING: configureInstallationMethod from PETSc.options.petscclone(config/PETSc/options/petscclone.py:20) lib/petsc/bin/maint exists. This appears to be a repository clone .git directory exists Executing: ['git', 'describe', '--match=v*'] stdout: v3.15.0-147-g35973a90ab Executing: ['git', 'log', '-1', '--pretty=format:%H'] stdout: 35973a90abcd8a78bb0c614bfac3956127cfae0b Executing: ['git', 'log', '-1', '--pretty=format:%ci'] stdout: 2021-04-13 09:07:58 -0400 Executing: ['git', 'rev-parse', '--abbrev-ref', 'HEAD'] stdout: adams/landau-gpu-opt Defined "VERSION_GIT" to ""v3.15.0-147-g35973a90ab"" Defined "VERSION_DATE_GIT" to ""2021-04-13 09:07:58 -0400"" Defined "VERSION_BRANCH_GIT" to ""adams/landau-gpu-opt"" child PETSc.options.petscclone 0.103270 ============================================================================================= TESTING: setNativeArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:31) ============================================================================================= TESTING: configureArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:43) Checks PETSC_ARCH and sets if not set ============================================================================================= Warning: PETSC_ARCH from environment does not match command-line or name of script. Warning: Using from command-line or name of script: arch-fugaku-fujitsu, ignoring environment: arch-ci-linux-gcc-opt ============================================================================================= configure hash file: arch-fugaku-fujitsu/lib/petsc/conf/configure-hash does not match, need to run configure Setting hashfile: arch-fugaku-fujitsu/lib/petsc/conf/configure-hash Deleting configure hash file: arch-fugaku-fujitsu/lib/petsc/conf/configure-hash Deleted configure hash file: arch-fugaku-fujitsu/lib/petsc/conf/configure-hash child PETSc.options.arch 0.074721 ============================================================================================= TESTING: setInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:39) setup installDir to either prefix or if that is not set to PETSC_DIR/PETSC_ARCH Defined make macro "PREFIXDIR" to "/home/ra010009/a04199/petsc-hash-pkgs/40131e" ============================================================================================= TESTING: saveReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:85) ============================================================================================= TESTING: cleanConfDir from PETSc.options.installDir(config/PETSc/options/installDir.py:78) ============================================================================================= TESTING: configureInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:62) Makes installDir subdirectories if it does not exist for both prefix install location and PETSc work install location Changed persistence directory to /home/ra010009/a04199/petsc/arch-fugaku-fujitsu/lib/petsc/conf ============================================================================================= TESTING: restoreReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:98) child PETSc.options.installDir 0.003191 ============================================================================================= TESTING: setExternalPackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:15) ============================================================================================= TESTING: cleanExternalpackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:22) child PETSc.options.externalpackagesdir 0.000860 ============================================================================================= TESTING: configureCLanguage from PETSc.options.languages(config/PETSc/options/languages.py:27) Choose whether to compile the PETSc library using a C or C++ compiler C language is C Defined "CLANGUAGE_C" to "1" Defined make macro "CLANGUAGE" to "C" child PETSc.options.languages 0.001094 ============================================================================================= TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1957) ============================================================================================= TESTING: checkEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1987) ============================================================================================= TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:1927) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ============================================================================================= TESTING: requireMpiLdPath from config.setCompilers(config/BuildSystem/config/setCompilers.py:1948) OpenMPI wrappers require LD_LIBRARY_PATH set ============================================================================================= TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:526) Initialize the compiler and linker flags Initialized CFLAGS to -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack Initialized CFLAGS to -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack Initialized LDFLAGS to Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Initialized HIPFLAGS to Initialized HIPFLAGS to Initialized LDFLAGS to Initialized SYCLCXXFLAGS to Initialized SYCLCXXFLAGS to Initialized LDFLAGS to Initialized CXXFLAGS to -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Initialized CPPFLAGS to Initialized FPPFLAGS to Initialized CUDAPPFLAGS to -Wno-deprecated-gpu-targets Initialized CXXPPFLAGS to Initialized HIPPPFLAGS to -Wno-deprecated-gpu-targets Initialized SYCLPPFLAGS to -Wno-deprecated-gpu-targets Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized HIPC_LINKER_FLAGS to [] Initialized SYCLCXX_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ============================================================================================= TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:701) Locate a functional C compiler Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/mpifccpx...found Defined make macro "CC" to "mpifccpx" ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /opt/FJSVxos/devkit/aarch64/bin/aarch64-linux-gnu-ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm Executing: mpifccpx --version stdout: fccpx (FCC) 4.5.0 20210304 simulating gcc version 6.1 Copyright FUJITSU LIMITED 2019-2021 Since MPI c compiler starts with mpi, force searches for other compilers to only look for MPI compilers ============================================================================================= TESTING: checkCPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:740) Locate a functional C preprocessor Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/mpifccpx...found Defined make macro "CPP" to "mpifccpx -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : ============================================================================================= TESTING: checkCUDACompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:776) Locate a functional CUDA compiler Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/nvcc...not found Checking for program /opt/local/openssh/bin/nvcc...not found Checking for program /usr/share/Modules/bin/nvcc...not found Checking for program /opt/local/openssh/bin/nvcc...not found Checking for program /usr/local/bin/nvcc...not found Checking for program /bin/nvcc...not found Checking for program /usr/bin/nvcc...not found Checking for program /usr/local/sbin/nvcc...not found Checking for program /usr/sbin/nvcc...not found Checking for program /home/ra010009/a04199/.local/bin/nvcc...not found Checking for program /home/ra010009/a04199/bin/nvcc...not found Checking for program /home/ra010009/a04199/petsc/lib/petsc/bin/win32fe/nvcc...not found Checking for program /Developer/NVIDIA/CUDA-6.5/bin/nvcc...not found Checking for program /home/ra010009/a04199/petsc/lib/petsc/bin/win32fe/nvcc...not found Unable to find programs ['nvcc'] providing listing of the specific search path Warning accessing /Developer/NVIDIA/CUDA-6.5/bin gives errors: must be str, not builtin_function_or_method Checking for program /usr/local/cuda/bin/nvcc...not found Checking for program /home/ra010009/a04199/petsc/lib/petsc/bin/win32fe/nvcc...not found Unable to find programs ['nvcc'] providing listing of the specific search path Warning accessing /usr/local/cuda/bin gives errors: must be str, not builtin_function_or_method ============================================================================================= TESTING: checkCUDAPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:816) Locate a functional CUDA preprocessor ============================================================================================= TESTING: checkHIPCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:850) Locate a functional HIP compiler Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/hipcc...not found Checking for program /opt/local/openssh/bin/hipcc...not found Checking for program /usr/share/Modules/bin/hipcc...not found Checking for program /opt/local/openssh/bin/hipcc...not found Checking for program /usr/local/bin/hipcc...not found Checking for program /bin/hipcc...not found Checking for program /usr/bin/hipcc...not found Checking for program /usr/local/sbin/hipcc...not found Checking for program /usr/sbin/hipcc...not found Checking for program /home/ra010009/a04199/.local/bin/hipcc...not found Checking for program /home/ra010009/a04199/bin/hipcc...not found Checking for program /home/ra010009/a04199/petsc/lib/petsc/bin/win32fe/hipcc...not found Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/opt/rocm/bin/hipcc...not found Checking for program /opt/local/openssh/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/share/Modules/bin/opt/rocm/bin/hipcc...not found Checking for program /opt/local/openssh/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/local/bin/opt/rocm/bin/hipcc...not found Checking for program /bin/opt/rocm/bin/hipcc...not found Checking for program /usr/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/local/sbin/opt/rocm/bin/hipcc...not found Checking for program /usr/sbin/opt/rocm/bin/hipcc...not found Checking for program /home/ra010009/a04199/.local/bin/opt/rocm/bin/hipcc...not found Checking for program /home/ra010009/a04199/bin/opt/rocm/bin/hipcc...not found Checking for program /home/ra010009/a04199/petsc/lib/petsc/bin/win32fe/opt/rocm/bin/hipcc...not found ============================================================================================= TESTING: checkHIPPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:886) Placeholder for now ============================================================================================= TESTING: checkSYCLCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:907) Locate a functional SYCL compiler ============================================================================================= TESTING: checkSYCLPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:933) Placeholder for now ============================================================================================= TESTING: checkCxxCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:1020) Locate a functional Cxx compiler Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/mpiFCCpx...found Defined make macro "CXX" to "mpiFCCpx" ===== Checking compiler Executing: mpiFCCpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ===== Checking linker Executing: mpiFCCpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpiFCCpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o ===== Checking linker Executing: mpiFCCpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpiFCCpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /opt/FJSVxos/devkit/aarch64/bin/aarch64-linux-gnu-ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm Executing: mpiFCCpx --version stdout: FCCpx (FCC) 4.5.0 20210304 simulating gcc version 6.1 Copyright FUJITSU LIMITED 2019-2021 ============================================================================================= TESTING: checkCxxPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:1061) Locate a functional Cxx preprocessor Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/mpiFCCpx...found Defined make macro "CXXPP" to "mpiFCCpx -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpiFCCpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.cc Preprocess stderr before filtering: : Preprocess stderr after filtering: : ============================================================================================= TESTING: checkFortranCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:1160) Locate a functional Fortran compiler ============================================================================================= TESTING: checkLargeFileIO from config.setCompilers(config/BuildSystem/config/setCompilers.py:1366) ============================================================================================= TESTING: checkArchiver from config.setCompilers(config/BuildSystem/config/setCompilers.py:1465) Check that the archiver exists and can make a library usable by the compiler Executing: ar -V stdout: GNU ar version 2.30-73.el8 Copyright (C) 2018 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar version 2.30-73.el8 Copyright (C) 2018 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/ar...not found Checking for program /opt/local/openssh/bin/ar...not found Checking for program /usr/share/Modules/bin/ar...not found Checking for program /opt/local/openssh/bin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /bin/ar...found Defined make macro "AR" to "/bin/ar" Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/ranlib...not found Checking for program /opt/local/openssh/bin/ranlib...not found Checking for program /usr/share/Modules/bin/ranlib...not found Checking for program /opt/local/openssh/bin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /bin/ranlib...found Defined make macro "RANLIB" to "/bin/ranlib -c" Executing: /bin/ar cr /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/libconf1.a /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conf1.o Executing: /bin/ranlib -c /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/libconf1.a Possible ERROR while running ranlib: stderr: /bin/ranlib: invalid option -- 'c' Ranlib is not functional with your archiver. Try --with-ranlib=true if ranlib is unnecessary. Executing: ar -V stdout: GNU ar version 2.30-73.el8 Copyright (C) 2018 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar version 2.30-73.el8 Copyright (C) 2018 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/ar...not found Checking for program /opt/local/openssh/bin/ar...not found Checking for program /usr/share/Modules/bin/ar...not found Checking for program /opt/local/openssh/bin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /bin/ar...found Defined make macro "AR" to "/bin/ar" Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/ranlib...not found Checking for program /opt/local/openssh/bin/ranlib...not found Checking for program /usr/share/Modules/bin/ranlib...not found Checking for program /opt/local/openssh/bin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /bin/ranlib...found Defined make macro "RANLIB" to "/bin/ranlib" Executing: /bin/ar cr /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/libconf1.a /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conf1.o Executing: /bin/ranlib /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/libconf1.a ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o -L/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -lconf1 Defined make macro "AR_FLAGS" to "cr" Defined make macro "AR_LIB_SUFFIX" to "a" ============================================================================================= TESTING: checkArchiverRecipeArgfile from config.setCompilers(config/BuildSystem/config/setCompilers.py:1529) Checks if AR handles @ notation Executing: /bin/ar cr checkRecipeArgfile.a @checkRecipeArgfile.args Defined make macro "AR_ARGFILE" to "yes" ============================================================================================= TESTING: checkSharedLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1609) Check that the linker can produce shared libraries Executing: uname -s stdout: Linux Checking shared linker mpifccpx using flags ['-shared'] Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/mpifccpx...found Defined make macro "LD_SHARED" to "mpifccpx" Executing: mpifccpx --help | head -n 20 stdout: USAGE fccpx [ -Nnoclang ] [ option ... ] filename ... fcc [ -Nnoclang ] [ option ... ] filename ... OPTIONS General compiler options [ -# ] [ -### ] [ -A- ] [ -Aname[(tokens)] ] [ -B{dynamic|static} ] [ -C ] [ -Dname[=tokens] ] [ -E ] [ -H ] [ -Idir ] [ -Ldir ] [ -M ] [ -MD ] [ -MF filename ] [ -MM ] [ -MMD ] [ -MP ] [ -MT target ] [ -Nopt ] [ -P ] [ -Qc ] [ -S ] [ -SSL2 ] [ -SSL2BLAMP ] [ -Uname ] [ -Wtool,arg1[,arg2]... ] [ -Yitem,dir ] [ -c ] [ {-g|-g0} ] [ -lname ] [ -mt ] [ -o pathname ] [ -shared ] Message options [ -V ] [ {-help|--help} ] [ -j ] [ -w ] Optimization options Executing: mpifccpx -show stdout: fccpx -Kident_mpi -I/opt/FJSVxtclanga/.common/MELI024/include/mpi/fujitsu -pthread -L/opt/FJSVxtclanga/.common/MELI024/lib64 -lmpi -lfjstring_internal Trying C compiler flag -PIC Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -PIC /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: fccpx: -P is invalidated because -E is not specified. Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -PIC fccpx: -P is invalidated because -E is not specified. Added C compiler flag -PIC Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -PIC /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: fccpx: -P is invalidated because -E is not specified. Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest -shared -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -PIC /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o Possible ERROR while running linker: stderr: fccpx: -P is invalidated because -E is not specified. Valid C linker flag -shared ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -PIC /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: fccpx: -P is invalidated because -E is not specified. Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/libconftest.so -shared -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -PIC /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 1 stderr: fccpx: -P is invalidated because -E is not specified. /opt/FJSVxos/devkit/aarch64/bin/aarch64-linux-gnu-ld: /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o: relocation R_AARCH64_ADR_PREL_PG_HI21 against symbol `stdout@@GLIBC_2.17' which may bind externally can not be used when making a shared object; recompile with -fPIC /opt/FJSVxos/devkit/aarch64/bin/aarch64-linux-gnu-ld: /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o(.text+0x18): unresolvable R_AARCH64_ADR_PREL_PG_HI21 relocation against symbol `stdout@@GLIBC_2.17' /opt/FJSVxos/devkit/aarch64/bin/aarch64-linux-gnu-ld: final link failed: Bad value Rejected C compiler flag -PIC because it was not compatible with shared linker mpifccpx using flags ['-shared'] Trying C compiler flag -fPIC Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC Added C compiler flag -fPIC Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest -shared -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o Valid C linker flag -shared ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/libconftest.so -shared -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(void); int main() { int ret = foo(); if (ret) {} ; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o -L/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -lconftest Using shared linker mpifccpx with flags ['-shared'] and library extension so Executing: uname -s stdout: Linux Executing: uname -s stdout: Linux ============================================================================================= TESTING: checkPIC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1309) Determine the PIC option for each compiler Executing: mpiFCCpx --help | head -n 20 stdout: USAGE FCCpx [ -Nnoclang ] [ option ... ] filename ... FCC [ -Nnoclang ] [ option ... ] filename ... OPTIONS General compiler options [ -# ] [ -### ] [ -A- ] [ -Aname[(tokens)] ] [ -B{dynamic|static} ] [ -C ] [ -Dname[=tokens] ] [ -E ] [ -H ] [ -Idir ] [ -Ldir ] [ -M ] [ -MD ] [ -MF filename ] [ -MM ] [ -MMD ] [ -MP ] [ -MT target ] [ -Nopt ] [ -P ] [ -Qc ] [ -S ] [ -SSL2 ] [ -SSL2BLAMP ] [ -Uname ] [ -Wtool,arg1[,arg2]... ] [ -Yitem,dir ] [ -c ] [ {-g|-g0} ] [ -lname ] [ -mt ] [ -o pathname ] [ -shared ] Message options [ -V ] [ {-help|--help} ] [ -j ] [ -w ] [{--brief_diagnos- tics|--no_brief_diagnostics}] [ --diag_error tag[,tag]... ] [ --diag_suppress tag[,tag]... ] [ --display_error_number ] [ Executing: mpiFCCpx -show stdout: FCCpx -Kident_mpi -I/opt/FJSVxtclanga/.common/MELI024/include/mpi/fujitsu -pthread -L/opt/FJSVxtclanga/.common/MELI024/lib64 -lmpi_cxx -lmpi -lfjstring_internal Trying Cxx compiler flag -PIC for PIC code Executing: mpiFCCpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -PIC /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.cc Possible ERROR while running compiler: stderr: FCCpx: -P is invalidated because -E is not specified. Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -PIC FCCpx: -P is invalidated because -E is not specified. Added Cxx compiler flag -PIC ===== Checking linker Executing: mpiFCCpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -PIC /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.cc Possible ERROR while running compiler: stderr: FCCpx: -P is invalidated because -E is not specified. Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/libconftest.so -shared -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 1 stderr: /opt/FJSVxos/devkit/aarch64/bin/aarch64-linux-gnu-ld: /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o: relocation R_AARCH64_ADR_PREL_PG_HI21 against symbol `stdout@@GLIBC_2.17' which may bind externally can not be used when making a shared object; recompile with -fPIC /opt/FJSVxos/devkit/aarch64/bin/aarch64-linux-gnu-ld: /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o(.text+0x18): unresolvable R_AARCH64_ADR_PREL_PG_HI21 relocation against symbol `stdout@@GLIBC_2.17' /opt/FJSVxos/devkit/aarch64/bin/aarch64-linux-gnu-ld: final link failed: Bad value Rejected Cxx compiler flag -PIC because shared linker cannot handle it Trying Cxx compiler flag -fPIC for PIC code Executing: mpiFCCpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC Added Cxx compiler flag -fPIC ===== Checking linker Executing: mpiFCCpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/libconftest.so -shared -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o Accepted Cxx compiler flag -fPIC for PIC code ============================================================================================= TESTING: checkSharedLinkerPaths from config.setCompilers(config/BuildSystem/config/setCompilers.py:1722) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Executing: uname -s stdout: Linux Executing: mpifccpx -V Trying C linker flag -Wl,-rpath, Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest -Wl,-rpath,/vol0004/ra010009/a04199/petsc -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o Valid C linker flag -Wl,-rpath,/vol0004/ra010009/a04199/petsc Executing: uname -s stdout: Linux Executing: mpifccpx -V Trying Cxx linker flag -Wl,-rpath, Executing: mpiFCCpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpiFCCpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest -Wl,-rpath,/vol0004/ra010009/a04199/petsc -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-rpath,/vol0004/ra010009/a04199/petsc ============================================================================================= TESTING: checkLibC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1761) Test whether we need to explicitly include libc in shared linking - Mac OSX requires an explicit reference to libc for shared linking ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {void *chunk = malloc(31); free(chunk); return 0;} Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/libconftest.so -shared -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o Shared linking does not require an explicit libc reference ============================================================================================= TESTING: checkDynamicLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1807) Check that the linker can dynamicaly load shared libraries Checking for header: dlfcn.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_DLFCN_H" to "1" Checking for functions [dlopen dlsym dlclose] in library ['dl'] [] ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } char dlsym(); static void _check_dlsym() { dlsym(); } char dlclose(); static void _check_dlclose() { dlclose(); } int main() { _check_dlopen(); _check_dlsym(); _check_dlclose();; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -ldl Defined "HAVE_LIBDL" to "1" Adding ['dl'] to LIBS Executing: uname -s stdout: Linux Checking dynamic linker mpifccpx using flags ['-shared'] Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/mpifccpx...found Defined make macro "DYNAMICLINKER" to "mpifccpx" Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest -shared -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o -ldl Valid C linker flag -shared ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("test");return 0;} Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/libconftest.so -shared -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o -ldl ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { void *handle = dlopen("/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/libconftest.so", 0); int (*foo)(void) = (int (*)(void)) dlsym(handle, "foo"); if (!foo) { printf("Could not load symbol\n"); return -1; } if ((*foo)()) { printf("Invalid return from foo()\n"); return -1; } if (dlclose(handle)) { printf("Could not close library\n"); return -1; } ; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o -ldl Using dynamic linker mpifccpx with flags ['-shared'] and library extension so ============================================================================================= TESTING: output from config.setCompilers(config/BuildSystem/config/setCompilers.py:1856) Output module data as defines and substitutions Substituting "CC" with "mpifccpx" Substituting "CFLAGS" with "-L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC" Defined make macro "CC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "CPP" with "mpifccpx -E" Substituting "CPPFLAGS" with "" Substituting "CXX" with "mpiFCCpx" Substituting "CXX_CXXFLAGS" with " -fPIC" Substituting "CXXFLAGS" with "-L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack" Substituting "CXX_LINKER_SLFLAG" with "-Wl,-rpath," Substituting "CXXPP" with "mpiFCCpx -E" Substituting "CXXPPFLAGS" with "" Substituting "FC" with "" Substituting "LDFLAGS" with "" Substituting "LIBS" with "-ldl " Substituting "SHARED_LIBRARY_FLAG" with "-shared" child config.setCompilers 46.339476 ============================================================================================= TESTING: configureIndexSize from PETSc.options.indexTypes(config/PETSc/options/indexTypes.py:39) Defined "USE_64BIT_INDICES" to "1" Checking for functions [__floatdidf] in library ['-lgcc_s.1'] [] ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char __floatdidf(); static void _check___floatdidf() { __floatdidf(); } int main() { _check___floatdidf();; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -lgcc_s.1 -ldl Possible ERROR while running linker: exit code 1 stderr: /opt/FJSVxos/devkit/aarch64/bin/aarch64-linux-gnu-ld: cannot find -lgcc_s.1 Defined make macro "PETSC_INDEX_SIZE" to "64" child PETSc.options.indexTypes 5.786783 ============================================================================================= TESTING: configureCompilerFlags from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:82) Get the default compiler flags Defined make macro "C_VERSION" to "fccpx (FCC) 4.5.0 20210304" Ignoring default options which were overridden using --CFLAGS -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack Trying C compiler flag -Kfast Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast Added C compiler flag -Kfast Defined make macro "Cxx_VERSION" to "FCCpx (FCC) 4.5.0 20210304" Ignoring default options which were overridden using --CXXFLAGS -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack Trying Cxx compiler flag -Kfast Executing: mpiFCCpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -Kfast -fPIC /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -Kfast Added Cxx compiler flag -Kfast ============================================================================================= TESTING: checkIntelHardwareSupport from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:173) Use Linux/MacOS commands to determine what operations the hardware supports Executing: lscpu stdout: Architecture: x86_64 CPU op-mode(s): 32-bit, 64-bit Byte Order: Little Endian CPU(s): 64 On-line CPU(s) list: 0-63 Thread(s) per core: 2 Core(s) per socket: 16 Socket(s): 2 NUMA node(s): 4 Vendor ID: GenuineIntel CPU family: 6 Model: 85 Model name: Intel(R) Xeon(R) Gold 6242 CPU @ 2.80GHz Stepping: 7 CPU MHz: 2536.620 CPU max MHz: 2800.0000 CPU min MHz: 1200.0000 BogoMIPS: 5600.00 Virtualization: VT-x L1d cache: 32K L1i cache: 32K L2 cache: 1024K L3 cache: 22528K NUMA node0 CPU(s): 0-3,8-11,32-35,40-43 NUMA node1 CPU(s): 4-7,12-15,36-39,44-47 NUMA node2 CPU(s): 16-19,24-27,48-51,56-59 NUMA node3 CPU(s): 20-23,28-31,52-55,60-63 Flags: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc art arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer aes xsave avx f16c rdrand lahf_lm abm 3dnowprefetch cpuid_fault epb cat_l3 cdp_l3 invpcid_single intel_ppin ssbd mba ibrs ibpb stibp ibrs_enhanced tpr_shadow vnmi flexpriority ept vpid fsgsbase tsc_adjust bmi1 hle avx2 smep bmi2 erms invpcid rtm cqm mpx rdt_a avx512f avx512dq rdseed adx smap clflushopt clwb intel_pt avx512cd avx512bw avx512vl xsaveopt xsavec xgetbv1 xsaves cqm_llc cqm_occup_llc cqm_mbm_total cqm_mbm_local dtherm arat pln pts hwp hwp_act_window hwp_epp hwp_pkg_req pku ospke avx512_vnni md_clear flush_l1d arch_capabilities ============================================================================================= TESTING: checkCompilerMacros from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:164) Save the list of CPP macros defined by the C and C++ compiler, does not work for all compilers Executing: mpifccpx -c -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags/conftest.c -E -dM stdout: #define __CHAR_BIT__ 8 #define __PRAGMA_REDEFINE_EXTNAME 1 #define __STDC__ 1 #define __STDC_VERSION__ 201112L #define __STDC_NO_ATOMICS__ 1 #define __STDC_UTF_16__ 1 #define __STDC_UTF_32__ 1 #define __STDC_HOSTED__ 1 #define __EDG__ 1 #define __EDG_VERSION__ 500 #define __EDG_SIZE_TYPE__ unsigned long #define __EDG_PTRDIFF_TYPE__ long #define __GNUC_STDC_INLINE__ 1 #define __GNUC__ 6 #define __GNUC_MINOR__ 1 #define __GNUC_PATCHLEVEL__ 0 #define __VERSION__ "EDG gcc 6.1 mode" #define __CHAR16_TYPE__ unsigned short #define __CHAR32_TYPE__ unsigned int #define __ATOMIC_RELAXED 0 #define __ATOMIC_CONSUME 1 #define __ATOMIC_ACQUIRE 2 #define __ATOMIC_RELEASE 3 #define __ATOMIC_ACQ_REL 4 #define __ATOMIC_SEQ_CST 5 #define __GCC_ATOMIC_BOOL_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR16_T_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR32_T_LOCK_FREE 2 #define __GCC_ATOMIC_WCHAR_T_LOCK_FREE 2 #define __GCC_ATOMIC_SHORT_LOCK_FREE 2 #define __GCC_ATOMIC_INT_LOCK_FREE 2 #define __GCC_ATOMIC_LONG_LOCK_FREE 2 #define __GCC_ATOMIC_LLONG_LOCK_FREE 2 #define __GCC_ATOMIC_POINTER_LOCK_FREE 2 #define __STDC_NO_THREADS__ 1 #define __unix__ 1 #define __PTRDIFF_TYPE__ long int #define __SIZE_TYPE__ long unsigned int #define __WCHAR_TYPE__ int #define __linux__ 1 #define unix 1 #define linux 1 #define __FUJITSU 1 #define __FCC_major__ 4 #define __FCC_minor__ 5 #define __FCC_patchlevel__ 0 #define __FCC_version__ "4.5.0" #define __aarch64__ 1 #define __unix 1 #define __fcc_version__ 0x800 #define __fcc_version 800 #define __USER_LABEL_PREFIX__ #define __OPTIMIZE__ 1 #define __ARM_ARCH 8 #define __ARM_FEATURE_SVE 1 #define __FP_FAST_FMA 1 #define __ELF__ 1 #define __linux 1 #define __LIBC_6B 1 #define __LP64__ 1 #define _LP64 1 #define __PIC__ 2 #define __pic__ 2 #define __uint128_t long double #define __builtin_assume_aligned(address,align) (address) Executing: mpiFCCpx -c -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -Kfast -fPIC /home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags/conftest.cc -E -dM stdout: #define __CHAR_BIT__ 8 #define __PRAGMA_REDEFINE_EXTNAME 1 #define __STDC__ 1 #define __STDC_HOSTED__ 1 #define __cplusplus 201402L #define _WCHAR_T 1 #define __CHAR16_T_AND_CHAR32_T 1 #define _BOOL 1 #define __ARRAY_OPERATORS 1 #define __EXCEPTIONS 1 #define __RTTI 1 #define __PLACEMENT_DELETE 1 #define __FJ_RUNTIME_USES_NAMESPACES 1 #define __EDG_IA64_ABI 1 #define __cpp_hex_float 201603L #define __cpp_initializer_lists 200806L #define __cpp_sized_deallocation 201309L #define __cpp_unicode_characters 200704L #define __cpp_aggregate_nsdmi 201304L #define __cpp_alias_templates 200704L #define __cpp_attributes 200809L #define __cpp_binary_literals 201304L #define __cpp_decltype 200707L #define __cpp_decltype_auto 201304L #define __cpp_delegating_constructors 200604L #define __cpp_exceptions 199711L #define __cpp_generic_lambdas 201304L #define __cpp_inheriting_constructors 200802L #define __cpp_init_captures 201304L #define __cpp_lambdas 200907L #define __cpp_nsdmi 200809L #define __cpp_raw_strings 200710L #define __cpp_ref_qualifiers 200710L #define __cpp_return_type_deduction 201304L #define __cpp_rtti 199711L #define __cpp_rvalue_references 200610L #define __cpp_threadsafe_static_init 200806L #define __cpp_unicode_literals 200710L #define __cpp_user_defined_literals 200809L #define __cpp_variable_templates 201304L #define __cpp_variadic_templates 200704L #define __cpp_enumerator_attributes 201411L #define __cpp_constexpr 201304L #define __cpp_range_based_for 200907L #define __cpp_static_assert 201411L #define __EDG_TYPE_TRAITS_ENABLED 1 #define __VARIADIC_TEMPLATES 1 #define __STDCPP_THREADS__ 1 #define __EDG_CONSTEXPR_ENABLED__ 1 #define __EDG__ 1 #define __EDG_VERSION__ 500 #define __EDG_SIZE_TYPE__ unsigned long #define __EDG_PTRDIFF_TYPE__ long #define __GNUG__ 6 #define __GXX_RTTI 1 #define __GNUC_STDC_INLINE__ 1 #define __GNUC__ 6 #define __GNUC_MINOR__ 1 #define __GNUC_PATCHLEVEL__ 0 #define __VERSION__ "EDG g++ 6.1 mode" #define __CHAR16_TYPE__ unsigned short #define __CHAR32_TYPE__ unsigned int #define __ATOMIC_RELAXED 0 #define __ATOMIC_CONSUME 1 #define __ATOMIC_ACQUIRE 2 #define __ATOMIC_RELEASE 3 #define __ATOMIC_ACQ_REL 4 #define __ATOMIC_SEQ_CST 5 #define __GCC_ATOMIC_BOOL_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR16_T_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR32_T_LOCK_FREE 2 #define __GCC_ATOMIC_WCHAR_T_LOCK_FREE 2 #define __GCC_ATOMIC_SHORT_LOCK_FREE 2 #define __GCC_ATOMIC_INT_LOCK_FREE 2 #define __GCC_ATOMIC_LONG_LOCK_FREE 2 #define __GCC_ATOMIC_LLONG_LOCK_FREE 2 #define __GCC_ATOMIC_POINTER_LOCK_FREE 2 #define __unix__ 1 #define __PTRDIFF_TYPE__ long int #define __SIZE_TYPE__ long unsigned int #define __WCHAR_TYPE__ int #define __linux__ 1 #define _GNU_SOURCE 1 #define unix 1 #define linux 1 #define __FUJITSU 1 #define __FCC_major__ 4 #define __FCC_minor__ 5 #define __FCC_patchlevel__ 0 #define __FCC_version__ "4.5.0" #define __aarch64__ 1 #define __unix 1 #define __FCC_VERSION 800 #define __USER_LABEL_PREFIX__ #define __OPTIMIZE__ 1 #define __ARM_ARCH 8 #define __ARM_FEATURE_SVE 1 #define __FP_FAST_FMA 1 #define __ELF__ 1 #define __linux 1 #define __LIBC_6B 1 #define _LP64 1 #define __LP64__ 1 #define __PIC__ 2 #define __pic__ 2 #define __uint128_t long double #define __builtin_assume_aligned(address,align) (address) child config.compilerFlags 5.660923 Executing: mpifccpx --help | head -n 20 stdout: USAGE fccpx [ -Nnoclang ] [ option ... ] filename ... fcc [ -Nnoclang ] [ option ... ] filename ... OPTIONS General compiler options [ -# ] [ -### ] [ -A- ] [ -Aname[(tokens)] ] [ -B{dynamic|static} ] [ -C ] [ -Dname[=tokens] ] [ -E ] [ -H ] [ -Idir ] [ -Ldir ] [ -M ] [ -MD ] [ -MF filename ] [ -MM ] [ -MMD ] [ -MP ] [ -MT target ] [ -Nopt ] [ -P ] [ -Qc ] [ -S ] [ -SSL2 ] [ -SSL2BLAMP ] [ -Uname ] [ -Wtool,arg1[,arg2]... ] [ -Yitem,dir ] [ -c ] [ {-g|-g0} ] [ -lname ] [ -mt ] [ -o pathname ] [ -shared ] Message options [ -V ] [ {-help|--help} ] [ -j ] [ -w ] Optimization options ============================================================================================= TESTING: checkC99Flag from config.compilers(config/BuildSystem/config/compilers.py:1429) Check for -std=c99 or equivalent flag Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.c", line 7: warning: variable "x" was set but never used float x[2],y; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { float x[2],y; y = FLT_ROUNDS; // c++ comment int j = 2; for (int i=0; i<2; i++){ x[i] = i*j*y; } ; return 0; } Output from compiling with -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast "/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.c", line 7: warning: variable "x" was set but never used float x[2],y; ^ Accepted C99 compile flag: ============================================================================================= TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:158) Check for the C/CXX restrict keyword Executing: mpifccpx -V ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/conftest.c Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.compilers/conftest.c", line 5: warning: variable "x" was declared but never referenced float * __restrict x;; ^ Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set C restrict keyword to __restrict Defined "C_RESTRICT" to "__restrict" ============================================================================================= TESTING: checkCFormatting from config.compilers(config/BuildSystem/config/compilers.py:413) Activate format string checking if using the GNU compilers ============================================================================================= TESTING: checkCInline from config.compilers(config/BuildSystem/config/compilers.py:128) Check for C inline keyword ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set C Inline keyword to inline Defined "C_INLINE" to "inline" ============================================================================================= TESTING: checkDynamicLoadFlag from config.compilers(config/BuildSystem/config/compilers.py:424) Checks that dlopen() takes RTLD_XXX, and defines PETSC_HAVE_RTLD_XXX if it does ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LAZY);dlopen(libname, RTLD_NOW);dlopen(libname, RTLD_LOCAL);dlopen(libname, RTLD_GLOBAL); ; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_LAZY" to "1" Defined "HAVE_RTLD_NOW" to "1" Defined "HAVE_RTLD_LOCAL" to "1" Defined "HAVE_RTLD_GLOBAL" to "1" ============================================================================================= TESTING: checkCLibraries from config.compilers(config/BuildSystem/config/compilers.py:222) Determines the libraries needed to link with C compiled code ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void asub(void) {char s[16];printf("testing %s",s);} ===== Checking linker Executing: mpiFCCpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -Kfast -fPIC /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/conftest.cc Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.compilers/conftest.cc", line 5: warning: last line of file ends without a newline ^ Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Executing: mpiFCCpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/conftest.o /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/confc.o -ldl C libraries are not needed when using C++ linker ============================================================================================= TESTING: checkDependencyGenerationFlag from config.compilers(config/BuildSystem/config/compilers.py:1380) Check if -MMD works for dependency generation, and add it if it does Trying C compiler flag -MMD -MP Rejected C compiler flag -MMD -MP because no dependency file (/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.d) was generated Trying C compiler flag -MMD Rejected C compiler flag -MMD because no dependency file (/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.d) was generated Trying C compiler flag -xMMD Rejected C compiler flag -xMMD because no dependency file (/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.d) was generated Trying C compiler flag -qmakedep=gcc Rejected C compiler flag -qmakedep=gcc Trying C compiler flag -MD Rejected C compiler flag -MD because no dependency file (/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.d) was generated Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -MMD -MP /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -MMD -MP Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -MMD /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -MMD Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -xMMD /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -xMMD Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -qmakedep=gcc /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: fccpx: warning: -qmakedep=gcc is unrecognized option. Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -qmakedep=gcc fccpx: warning: -qmakedep=gcc is unrecognized option. Rejecting compiler flag -qmakedep=gcc due to fccpx: warning: -qmakedep=gcc is unrecognized option. Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -MD /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -MD Trying Cxx compiler flag -MMD -MP Rejected Cxx compiler flag -MMD -MP because no dependency file (/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.d) was generated Trying Cxx compiler flag -MMD Rejected Cxx compiler flag -MMD because no dependency file (/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.d) was generated Trying Cxx compiler flag -xMMD Rejected Cxx compiler flag -xMMD because no dependency file (/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.d) was generated Trying Cxx compiler flag -qmakedep=gcc Rejected Cxx compiler flag -qmakedep=gcc Trying Cxx compiler flag -MD Rejected Cxx compiler flag -MD because no dependency file (/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.d) was generated Executing: mpiFCCpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -Kfast -fPIC -MMD -MP /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -MMD -MP Executing: mpiFCCpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -Kfast -fPIC -MMD /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -MMD Executing: mpiFCCpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -Kfast -fPIC -xMMD /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -xMMD Executing: mpiFCCpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -Kfast -fPIC -qmakedep=gcc /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.cc Possible ERROR while running compiler: stderr: FCCpx: warning: -qmakedep=gcc is unrecognized option. Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -qmakedep=gcc FCCpx: warning: -qmakedep=gcc is unrecognized option. Rejecting compiler flag -qmakedep=gcc due to FCCpx: warning: -qmakedep=gcc is unrecognized option. Executing: mpiFCCpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -Kfast -fPIC -MD /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Output from compiling with -fPIC -MD Executing: mpiFCCpx --help | head -n 20 stdout: USAGE FCCpx [ -Nnoclang ] [ option ... ] filename ... FCC [ -Nnoclang ] [ option ... ] filename ... OPTIONS General compiler options [ -# ] [ -### ] [ -A- ] [ -Aname[(tokens)] ] [ -B{dynamic|static} ] [ -C ] [ -Dname[=tokens] ] [ -E ] [ -H ] [ -Idir ] [ -Ldir ] [ -M ] [ -MD ] [ -MF filename ] [ -MM ] [ -MMD ] [ -MP ] [ -MT target ] [ -Nopt ] [ -P ] [ -Qc ] [ -S ] [ -SSL2 ] [ -SSL2BLAMP ] [ -Uname ] [ -Wtool,arg1[,arg2]... ] [ -Yitem,dir ] [ -c ] [ {-g|-g0} ] [ -lname ] [ -mt ] [ -o pathname ] [ -shared ] Message options [ -V ] [ {-help|--help} ] [ -j ] [ -w ] [{--brief_diagnos- tics|--no_brief_diagnostics}] [ --diag_error tag[,tag]... ] [ --diag_suppress tag[,tag]... ] [ --display_error_number ] [ ============================================================================================= TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:158) Check for the C/CXX restrict keyword Executing: mpifccpx -V ===== Checking compiler Executing: mpiFCCpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -Kfast -fPIC /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/conftest.cc Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.compilers/conftest.cc", line 5: warning: variable "x" was declared but never referenced float * __restrict x;; ^ Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set Cxx restrict keyword to __restrict Defined "CXX_RESTRICT" to "__restrict" ============================================================================================= TESTING: checkCxxDialect from config.compilers(config/BuildSystem/config/compilers.py:471) Determine the CXX dialect supported by the compiler(language) [and correspoding compiler option - if any]. isGNU indicates if the compiler is g++. -with--dialect can take options: auto: use highest dialect configure can determine cxx17: [future?] cxx14: gnu++14 or c++14 cxx11: gnu++11 or c++11 0: disable CxxDialect check and use compiler default checkCxxDialect: checking CXX14 for Cxx with flag: Defined "HAVE_CXX_DIALECT_CXX14" to "1" Defined "HAVE_CXX_DIALECT_CXX11" to "1" Executing: mpiFCCpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -Kfast -fPIC /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.cc Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.cc", line 22: warning: statement is unreachable return 0; ^ Source: #include "confdefs.h" #include "conffix.h" #include #include #include template constexpr T Cubed( T x ) { return x*x*x; } int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); std::cout << x; constexpr std::complex I(0.0,1.0); auto lambda = [](auto x, auto y) {return x + y;}; return lambda(3,4) + (int)std::real(I); ; return 0; } Output from compiling with -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -Kfast "/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.cc", line 22: warning: statement is unreachable return 0; ^ ============================================================================================= TESTING: checkCxxOptionalExtensions from config.compilers(config/BuildSystem/config/compilers.py:443) Check whether the C++ compiler (IBM xlC, OSF5) need special flag for .c files which contain C++ Executing: mpiFCCpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -Kfast -fPIC /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Output from compiling with -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -Kfast ============================================================================================= TESTING: checkCxxInline from config.compilers(config/BuildSystem/config/compilers.py:143) Check for C++ inline keyword ===== Checking compiler Executing: mpiFCCpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -Kfast -fPIC /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set Cxx Inline keyword to inline Defined "CXX_INLINE" to "inline" ============================================================================================= TESTING: checkCxxLibraries from config.compilers(config/BuildSystem/config/compilers.py:566) Determines the libraries needed to link with C++ from C and Fortran ===== Checking compiler Executing: mpiFCCpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -Kfast -fPIC /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/conftest.c Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.compilers/conftest.c", line 5: warning: last line of file ends without a newline ^ Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/conftest.o /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/confc.o -ldl Possible ERROR while running linker: exit code 1 stderr: /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/confc.o: In function `asub()': /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/conftest.cc:7: undefined reference to `__cxa_allocate_exception' /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/conftest.cc:7: undefined reference to `typeinfo for int' /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/conftest.cc:7: undefined reference to `typeinfo for int' /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/conftest.cc:7: undefined reference to `__cxa_throw' /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/conftest.cc:7: undefined reference to `__cxa_get_exception_ptr' /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/conftest.cc:7: undefined reference to `__cxa_begin_catch' /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/conftest.cc:7: undefined reference to `std::__1::cout' /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/conftest.cc:7: undefined reference to `std::__1::cout' /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/conftest.cc:7: undefined reference to `__cxa_end_catch' /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/conftest.cc:7: undefined reference to `__cxa_end_catch' /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/confc.o: In function `std::__1::basic_string, std::__1::allocator >::basic_string(unsigned long, char)': /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/string:2164: undefined reference to `std::__1::basic_string, std::__1::allocator >::__init(unsigned long, char)' /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/confc.o: In function `std::__1::ostreambuf_iterator > std::__1::__pad_and_output >(std::__1::ostreambuf_iterator >, char const*, char const*, char const*, std::__1::ios_base&, char)': /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/locale:1510: undefined reference to `std::__1::basic_string, std::__1::allocator >::~basic_string()' /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/locale:1510: undefined reference to `std::__1::basic_string, std::__1::allocator >::~basic_string()' /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/locale:1512: undefined reference to `std::__1::basic_string, std::__1::allocator >::~basic_string()' /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/confc.o: In function `std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long)': /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/ostream:751: undefined reference to `std::__1::basic_ostream >::sentry::sentry(std::__1::basic_ostream >&)' /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/confc.o: In function `std::__1::basic_ios >::widen(char) const': /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/ios:734: undefined reference to `std::__1::ios_base::getloc() const' /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/confc.o: In function `std::__1::ctype const& std::__1::use_facet >(std::__1::locale const&)': /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/__locale:186: undefined reference to `std::__1::ctype::id' /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/__locale:186: undefined reference to `std::__1::ctype::id' /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/__locale:186: undefined reference to `std::__1::locale::use_facet(std::__1::locale::id&) const' /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/confc.o: In function `std::__1::basic_ios >::widen(char) const': /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/ios:734: undefined reference to `std::__1::locale::~locale()' /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/ios:734: undefined reference to `std::__1::locale::~locale()' /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/confc.o: In function `std::__1::ios_base::setstate(unsigned int)': /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/ios:524: undefined reference to `std::__1::ios_base::clear(unsigned int)' /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/confc.o: In function `std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long)': /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/ostream:764: undefined reference to `std::__1::basic_ostream >::sentry::~sentry()' /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/ostream:764: undefined reference to `__cxa_begin_catch' /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/ostream:769: undefined reference to `std::__1::ios_base::__set_badbit_and_consider_rethrow()' /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/ostream:769: undefined reference to `__cxa_end_catch' /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/ostream:770: undefined reference to `__cxa_end_catch' /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/ostream:766: undefined reference to `std::__1::basic_ostream >::sentry::~sentry()' /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/confc.o: In function `std::__1::__deallocate(void*)': /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/new:174: undefined reference to `operator delete(void*)' /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/confc.o:(.data.DW.ref.__gxx_personality_v0[DW.ref.__gxx_personality_v0]+0x0): undefined reference to `__gxx_personality_v0' /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/confc.o:(.data.DW.ref._ZTIi[DW.ref._ZTIi]+0x0): undefined reference to `typeinfo for int' Executing: uname -s stdout: Linux ===== Checking compiler Executing: mpiFCCpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -Kfast -fPIC /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/conftest.c Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.compilers/conftest.c", line 5: warning: last line of file ends without a newline ^ Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/conftest.o /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/confc.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/confc.o: In function `asub()': /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/conftest.cc:7: undefined reference to `std::__1::cout' /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/conftest.cc:7: undefined reference to `std::__1::cout' /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/confc.o: In function `std::__1::basic_string, std::__1::allocator >::basic_string(unsigned long, char)': /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/string:2164: undefined reference to `std::__1::basic_string, std::__1::allocator >::__init(unsigned long, char)' /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/confc.o: In function `std::__1::ostreambuf_iterator > std::__1::__pad_and_output >(std::__1::ostreambuf_iterator >, char const*, char const*, char const*, std::__1::ios_base&, char)': /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/locale:1510: undefined reference to `std::__1::basic_string, std::__1::allocator >::~basic_string()' /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/locale:1510: undefined reference to `std::__1::basic_string, std::__1::allocator >::~basic_string()' /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/locale:1512: undefined reference to `std::__1::basic_string, std::__1::allocator >::~basic_string()' /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/confc.o: In function `std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long)': /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/ostream:751: undefined reference to `std::__1::basic_ostream >::sentry::sentry(std::__1::basic_ostream >&)' /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/confc.o: In function `std::__1::basic_ios >::widen(char) const': /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/ios:734: undefined reference to `std::__1::ios_base::getloc() const' /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/confc.o: In function `std::__1::ctype const& std::__1::use_facet >(std::__1::locale const&)': /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/__locale:186: undefined reference to `std::__1::ctype::id' /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/__locale:186: undefined reference to `std::__1::ctype::id' /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/__locale:186: undefined reference to `std::__1::locale::use_facet(std::__1::locale::id&) const' /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/confc.o: In function `std::__1::basic_ios >::widen(char) const': /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/ios:734: undefined reference to `std::__1::locale::~locale()' /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/ios:734: undefined reference to `std::__1::locale::~locale()' /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/confc.o: In function `std::__1::ios_base::setstate(unsigned int)': /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/ios:524: undefined reference to `std::__1::ios_base::clear(unsigned int)' /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/confc.o: In function `std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long)': /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/ostream:764: undefined reference to `std::__1::basic_ostream >::sentry::~sentry()' /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/ostream:769: undefined reference to `std::__1::ios_base::__set_badbit_and_consider_rethrow()' /opt/FJSVxtclanga/tcsds-1.2.31/bin/../include/libc++/v371/ostream:766: undefined reference to `std::__1::basic_ostream >::sentry::~sentry()' C++ code cannot directly be linked with C linker using -lstdc++, therefore will determine needed C++ libraries Executing: mpiFCCpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -Kfast -fPIC /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpiFCCpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/conftest -v -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/conftest.o -ldl stdout: GNU ld version 2.30-49.el8 /opt/FJSVxos/devkit/aarch64/bin/aarch64-linux-gnu-ld --build-id --sysroot=/opt/FJSVxos/devkit/aarch64/rfs --eh-frame-hdr -m aarch64linux -dynamic-linker /lib/ld-linux-aarch64.so.1 /opt/FJSVxos/devkit/aarch64/rfs/usr/lib64/crt1.o /opt/FJSVxos/devkit/aarch64/rfs/usr/lib64/crti.o /opt/FJSVxos/devkit/aarch64/lib/gcc/aarch64-linux-gnu/8/crtbegin.o -lfjprofmpi -L/opt/FJSVxos/devkit/aarch64/lib/gcc/aarch64-linux-gnu/8 -o /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/conftest -v -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/conftest.o -ldl -L/opt/FJSVxtclanga/.common/MELI024/lib64 -lmpi_cxx -lmpi -lfjstring_internal -L/opt/FJSVxos/devkit/aarch64/lib/gcc/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/lib/../lib64 /opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64/fjcrt0.o /opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64/fjlang08.o /opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64/fjfz.o /opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64/fjhpctag.o -L/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64 -lfj90i -lfj90fmt_sve -lfj90f -lfjsrcinfo -lfjcrt -lfjprofcore -lfjprofomp -lfjc++ -lfjc++abi -lfjdemgl -L/opt/FJSVxos/devkit/aarch64/rfs/usr/lib64 -L/opt/FJSVxos/devkit/aarch64/rfs/opt/FJSVxos/mmm/lib64 -L/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64/nofjobj -T/opt/FJSVxos/devkit/aarch64/rfs/opt/FJSVxos/mmm/util/bss-2mb.lds -lmpg -lm -lrt -lpthread -lelf -lz -ldl -lgcc_s -lgcc -lc -lgcc_s -lgcc -lc /opt/FJSVxos/devkit/aarch64/lib/gcc/aarch64-linux-gnu/8/crtend.o /opt/FJSVxos/devkit/aarch64/rfs/usr/lib64/crtn.o Possible ERROR while running linker: stdout: GNU ld version 2.30-49.el8 /opt/FJSVxos/devkit/aarch64/bin/aarch64-linux-gnu-ld --build-id --sysroot=/opt/FJSVxos/devkit/aarch64/rfs --eh-frame-hdr -m aarch64linux -dynamic-linker /lib/ld-linux-aarch64.so.1 /opt/FJSVxos/devkit/aarch64/rfs/usr/lib64/crt1.o /opt/FJSVxos/devkit/aarch64/rfs/usr/lib64/crti.o /opt/FJSVxos/devkit/aarch64/lib/gcc/aarch64-linux-gnu/8/crtbegin.o -lfjprofmpi -L/opt/FJSVxos/devkit/aarch64/lib/gcc/aarch64-linux-gnu/8 -o /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/conftest -v -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/conftest.o -ldl -L/opt/FJSVxtclanga/.common/MELI024/lib64 -lmpi_cxx -lmpi -lfjstring_internal -L/opt/FJSVxos/devkit/aarch64/lib/gcc/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/lib/../lib64 /opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64/fjcrt0.o /opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64/fjlang08.o /opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64/fjfz.o /opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64/fjhpctag.o -L/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64 -lfj90i -lfj90fmt_sve -lfj90f -lfjsrcinfo -lfjcrt -lfjprofcore -lfjprofomp -lfjc++ -lfjc++abi -lfjdemgl -L/opt/FJSVxos/devkit/aarch64/rfs/usr/lib64 -L/opt/FJSVxos/devkit/aarch64/rfs/opt/FJSVxos/mmm/lib64 -L/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64/nofjobj -T/opt/FJSVxos/devkit/aarch64/rfs/opt/FJSVxos/mmm/util/bss-2mb.lds -lmpg -lm -lrt -lpthread -lelf -lz -ldl -lgcc_s -lgcc -lc -lgcc_s -lgcc -lc /opt/FJSVxos/devkit/aarch64/lib/gcc/aarch64-linux-gnu/8/crtend.o /opt/FJSVxos/devkit/aarch64/rfs/usr/lib64/crtn.ostderr: FCCpx: Fujitsu C/C++ Compiler 4.5.0 tcsds-1.2.31 simulating gcc version 6.1 compilers: Checking arg GNU compilers: Unknown arg GNU compilers: Checking arg ld compilers: Unknown arg ld compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 2.30-49.el8 compilers: Unknown arg 2.30-49.el8 compilers: Checking arg /opt/FJSVxos/devkit/aarch64/bin/aarch64-linux-gnu-ld compilers: Unknown arg /opt/FJSVxos/devkit/aarch64/bin/aarch64-linux-gnu-ld compilers: Checking arg --build-id compilers: Unknown arg --build-id compilers: Checking arg --sysroot=/opt/FJSVxos/devkit/aarch64/rfs compilers: Unknown arg --sysroot=/opt/FJSVxos/devkit/aarch64/rfs compilers: Checking arg --eh-frame-hdr compilers: Unknown arg --eh-frame-hdr compilers: Checking arg -m compilers: Unknown arg -m compilers: Checking arg aarch64linux compilers: Unknown arg aarch64linux compilers: Checking arg -dynamic-linker compilers: Unknown arg -dynamic-linker compilers: Checking arg /lib/ld-linux-aarch64.so.1 compilers: Unknown arg /lib/ld-linux-aarch64.so.1 compilers: Checking arg /opt/FJSVxos/devkit/aarch64/rfs/usr/lib64/crt1.o compilers: Unknown arg /opt/FJSVxos/devkit/aarch64/rfs/usr/lib64/crt1.o compilers: Checking arg /opt/FJSVxos/devkit/aarch64/rfs/usr/lib64/crti.o compilers: Unknown arg /opt/FJSVxos/devkit/aarch64/rfs/usr/lib64/crti.o compilers: Checking arg /opt/FJSVxos/devkit/aarch64/lib/gcc/aarch64-linux-gnu/8/crtbegin.o compilers: Unknown arg /opt/FJSVxos/devkit/aarch64/lib/gcc/aarch64-linux-gnu/8/crtbegin.o compilers: Checking arg -lfjprofmpi compilers: Found library: -lfjprofmpi compilers: Checking arg -L/opt/FJSVxos/devkit/aarch64/lib/gcc/aarch64-linux-gnu/8 compilers: Found library directory: -L/opt/FJSVxos/devkit/aarch64/lib/gcc/aarch64-linux-gnu/8 compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/conftest compilers: Unknown arg /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/conftest compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg -L compilers: Found -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 compilers: Checking arg -lfjlapack compilers: Found library: -lfjlapack compilers: Checking arg /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/conftest.o compilers: Unknown arg /home/ra010009/a04199/petsc-3a1s51fh/config.compilers/conftest.o compilers: Checking arg -ldl compilers: Found library: -ldl compilers: Checking arg -L/opt/FJSVxtclanga/.common/MELI024/lib64 compilers: Found library directory: -L/opt/FJSVxtclanga/.common/MELI024/lib64 compilers: Checking arg -lmpi_cxx compilers: Found library: -lmpi_cxx compilers: Checking arg -lmpi compilers: Found library: -lmpi compilers: Checking arg -lfjstring_internal compilers: Found library: -lfjstring_internal compilers: Checking arg -L/opt/FJSVxos/devkit/aarch64/lib/gcc/aarch64-linux-gnu/8/../../../../aarch64-linux-gnu/lib/../lib64 compilers: Found library directory: -L/opt/FJSVxos/devkit/aarch64/aarch64-linux-gnu/lib64 compilers: Checking arg /opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64/fjcrt0.o compilers: Unknown arg /opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64/fjcrt0.o compilers: Checking arg /opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64/fjlang08.o compilers: Unknown arg /opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64/fjlang08.o compilers: Checking arg /opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64/fjfz.o compilers: Unknown arg /opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64/fjfz.o compilers: Checking arg /opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64/fjhpctag.o compilers: Unknown arg /opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64/fjhpctag.o compilers: Checking arg -L/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64 compilers: Found library directory: -L/opt/FJSVxtclanga/tcsds-1.2.31/lib64 compilers: Checking arg -lfj90i compilers: Found library: -lfj90i compilers: Checking arg -lfj90fmt_sve compilers: Found library: -lfj90fmt_sve compilers: Checking arg -lfj90f compilers: Found library: -lfj90f compilers: Checking arg -lfjsrcinfo compilers: Found library: -lfjsrcinfo compilers: Checking arg -lfjcrt compilers: Found library: -lfjcrt compilers: Checking arg -lfjprofcore compilers: Found library: -lfjprofcore compilers: Checking arg -lfjprofomp compilers: Found library: -lfjprofomp compilers: Checking arg -lfjc++ compilers: Found library: -lfjc++ compilers: Checking arg -lfjc++abi compilers: Found library: -lfjc++abi compilers: Checking arg -lfjdemgl compilers: Found library: -lfjdemgl compilers: Checking arg -L/opt/FJSVxos/devkit/aarch64/rfs/usr/lib64 compilers: Found library directory: -L/opt/FJSVxos/devkit/aarch64/rfs/usr/lib64 compilers: Checking arg -L/opt/FJSVxos/devkit/aarch64/rfs/opt/FJSVxos/mmm/lib64 compilers: Found library directory: -L/opt/FJSVxos/devkit/aarch64/rfs/opt/FJSVxos/mmm/lib64 compilers: Checking arg -L/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib64/nofjobj compilers: Found library directory: -L/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj compilers: Checking arg -T/opt/FJSVxos/devkit/aarch64/rfs/opt/FJSVxos/mmm/util/bss-2mb.lds compilers: Unknown arg -T/opt/FJSVxos/devkit/aarch64/rfs/opt/FJSVxos/mmm/util/bss-2mb.lds compilers: Checking arg -lmpg compilers: Found library: -lmpg compilers: Checking arg -lm compilers: Found library: -lm compilers: Checking arg -lrt compilers: Found library: -lrt compilers: Checking arg -lpthread compilers: Found library: -lpthread compilers: Checking arg -lelf compilers: Found library: -lelf compilers: Checking arg -lz compilers: Found library: -lz compilers: Checking arg -ldl compilers: Checking arg -lgcc_s compilers: Found library: -lgcc_s compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg -lc compilers: Skipping system library: -lc compilers: Checking arg -lgcc_s compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg -lc compilers: Skipping system library: -lc compilers: Checking arg /opt/FJSVxos/devkit/aarch64/lib/gcc/aarch64-linux-gnu/8/crtend.o compilers: Unknown arg /opt/FJSVxos/devkit/aarch64/lib/gcc/aarch64-linux-gnu/8/crtend.o compilers: Checking arg /opt/FJSVxos/devkit/aarch64/rfs/usr/lib64/crtn.o compilers: Unknown arg /opt/FJSVxos/devkit/aarch64/rfs/usr/lib64/crtn.o compilers: Checking arg FCCpx: compilers: Unknown arg FCCpx: compilers: Checking arg Fujitsu compilers: Unknown arg Fujitsu compilers: Checking arg C/C++ compilers: Unknown arg C/C++ compilers: Checking arg Compiler compilers: Unknown arg Compiler compilers: Checking arg 4.5.0 compilers: Unknown arg 4.5.0 compilers: Checking arg tcsds-1.2.31 compilers: Unknown arg tcsds-1.2.31 compilers: Checking arg simulating compilers: Unknown arg simulating compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 6.1 compilers: Unknown arg 6.1 compilers: Libraries needed to link Cxx code with another linker: ['-lfjprofmpi', '-Wl,-rpath,/opt/FJSVxos/devkit/aarch64/lib/gcc/aarch64-linux-gnu/8', '-L/opt/FJSVxos/devkit/aarch64/lib/gcc/aarch64-linux-gnu/8', '-Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.29/lib64', '-L/opt/FJSVxtclanga/tcsds-1.2.29/lib64', '-lfjlapack', '-ldl', '-Wl,-rpath,/opt/FJSVxtclanga/.common/MELI024/lib64', '-L/opt/FJSVxtclanga/.common/MELI024/lib64', '-lmpi_cxx', '-lmpi', '-lfjstring_internal', '-Wl,-rpath,/opt/FJSVxos/devkit/aarch64/aarch64-linux-gnu/lib64', '-L/opt/FJSVxos/devkit/aarch64/aarch64-linux-gnu/lib64', '-Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64', '-L/opt/FJSVxtclanga/tcsds-1.2.31/lib64', '-lfj90i', '-lfj90fmt_sve', '-lfj90f', '-lfjsrcinfo', '-lfjcrt', '-lfjprofcore', '-lfjprofomp', '-lfjc++', '-lfjc++abi', '-lfjdemgl', '-Wl,-rpath,/opt/FJSVxos/devkit/aarch64/rfs/usr/lib64', '-L/opt/FJSVxos/devkit/aarch64/rfs/usr/lib64', '-Wl,-rpath,/opt/FJSVxos/devkit/aarch64/rfs/opt/FJSVxos/mmm/lib64', '-L/opt/FJSVxos/devkit/aarch64/rfs/opt/FJSVxos/mmm/lib64', '-Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj', '-L/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj', '-lmpg', '-lm', '-lrt', '-lpthread', '-lelf', '-lz', '-lgcc_s'] compilers: Check that Cxx libraries can be used with C as linker ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o -lfjprofmpi -Wl,-rpath,/opt/FJSVxos/devkit/aarch64/lib/gcc/aarch64-linux-gnu/8 -L/opt/FJSVxos/devkit/aarch64/lib/gcc/aarch64-linux-gnu/8 -Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.29/lib64 -L/opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -ldl -Wl,-rpath,/opt/FJSVxtclanga/.common/MELI024/lib64 -L/opt/FJSVxtclanga/.common/MELI024/lib64 -lmpi_cxx -lmpi -lfjstring_internal -Wl,-rpath,/opt/FJSVxos/devkit/aarch64/aarch64-linux-gnu/lib64 -L/opt/FJSVxos/devkit/aarch64/aarch64-linux-gnu/lib64 -Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64 -L/opt/FJSVxtclanga/tcsds-1.2.31/lib64 -lfj90i -lfj90fmt_sve -lfj90f -lfjsrcinfo -lfjcrt -lfjprofcore -lfjprofomp -lfjc++ -lfjc++abi -lfjdemgl -Wl,-rpath,/opt/FJSVxos/devkit/aarch64/rfs/usr/lib64 -L/opt/FJSVxos/devkit/aarch64/rfs/usr/lib64 -Wl,-rpath,/opt/FJSVxos/devkit/aarch64/rfs/opt/FJSVxos/mmm/lib64 -L/opt/FJSVxos/devkit/aarch64/rfs/opt/FJSVxos/mmm/lib64 -Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj -L/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj -lmpg -lm -lrt -lpthread -lelf -lz -lgcc_s -ldl ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o -lfjprofmpi -Wl,-rpath,/opt/FJSVxos/devkit/aarch64/lib/gcc/aarch64-linux-gnu/8 -L/opt/FJSVxos/devkit/aarch64/lib/gcc/aarch64-linux-gnu/8 -Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.29/lib64 -L/opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -ldl -Wl,-rpath,/opt/FJSVxtclanga/.common/MELI024/lib64 -L/opt/FJSVxtclanga/.common/MELI024/lib64 -lmpi_cxx -lmpi -lfjstring_internal -Wl,-rpath,/opt/FJSVxos/devkit/aarch64/aarch64-linux-gnu/lib64 -L/opt/FJSVxos/devkit/aarch64/aarch64-linux-gnu/lib64 -Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64 -L/opt/FJSVxtclanga/tcsds-1.2.31/lib64 -lfj90i -lfj90fmt_sve -lfj90f -lfjsrcinfo -lfjcrt -lfjprofcore -lfjprofomp -lfjc++ -lfjc++abi -lfjdemgl -Wl,-rpath,/opt/FJSVxos/devkit/aarch64/rfs/usr/lib64 -L/opt/FJSVxos/devkit/aarch64/rfs/usr/lib64 -Wl,-rpath,/opt/FJSVxos/devkit/aarch64/rfs/opt/FJSVxos/mmm/lib64 -L/opt/FJSVxos/devkit/aarch64/rfs/opt/FJSVxos/mmm/lib64 -Wl,-rpath,/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj -L/opt/FJSVxtclanga/tcsds-1.2.31/lib64/nofjobj -lmpg -lm -lrt -lpthread -lelf -lz -lgcc_s -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /opt/FJSVxos/devkit/aarch64/bin/aarch64-linux-gnu-ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm Executing: mpiFCCpx -V ============================================================================================= TESTING: setupFrameworkCompilers from config.compilers(config/BuildSystem/config/compilers.py:1506) child config.compilers 14.458782 ============================================================================================= TESTING: configureClosure from config.utilities.closure(config/BuildSystem/config/utilities/closure.py:17) Determine if Apple ^close syntax is supported in C ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure/conftest.c Possible ERROR while running compiler: exit code 2 stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure/conftest.c", line 6: error: expected an identifier int (^closure)(int);; ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include int main() { int (^closure)(int);; return 0; } Compile failed inside link child config.utilities.closure 0.063342 child config.compilersFortran 0.000034 ============================================================================================= TESTING: checkStdC from config.headers(config/BuildSystem/config/headers.py:105) ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c ============================================================================================= TESTING: checkStat from config.headers(config/BuildSystem/config/headers.py:138) Checks whether stat file-mode macros are broken, and defines STAT_MACROS_BROKEN if they are Preprocessing source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(S_ISBLK) && defined(S_IFDIR) # if S_ISBLK (S_IFDIR) You lose. # endif #endif #if defined(S_ISBLK) && defined(S_IFCHR) # if S_ISBLK (S_IFCHR) You lose. # endif #endif #if defined(S_ISLNK) && defined(S_IFREG) # if S_ISLNK (S_IFREG) You lose. # endif #endif #if defined(S_ISSOCK) && defined(S_IFREG) # if S_ISSOCK (S_IFREG) You lose. # endif #endif Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c ============================================================================================= TESTING: checkSysWait from config.headers(config/BuildSystem/config/headers.py:173) Check for POSIX.1 compatible sys/wait.h, and defines HAVE_SYS_WAIT_H if found ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifndef WEXITSTATUS #define WEXITSTATUS(stat_val) ((unsigned)(stat_val) >> 8) #endif #ifndef WIFEXITED #define WIFEXITED(stat_val) (((stat_val) & 255) == 0) #endif int main() { int s; wait (&s); s = WIFEXITED (s) ? WEXITSTATUS (s) : 1; ; return 0; } Defined "HAVE_SYS_WAIT_H" to "1" ============================================================================================= TESTING: checkTime from config.headers(config/BuildSystem/config/headers.py:195) Checks if you can safely include both and , and if so defines TIME_WITH_SYS_TIME Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_TIME_H" to "1" Checking for header: sys/time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TIME_H" to "1" ============================================================================================= TESTING: checkMath from config.headers(config/BuildSystem/config/headers.py:201) Checks for the math headers and defines Checking for header: math.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double pi = M_PI; if (pi); ; return 0; } Found math #defines, like M_PI ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SETJMP_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib/fcc.pre" #pragma unknown_control_flow(_setjmp) #pragma unknown_control_flow(__setjmp) #pragma unknown_control_flow(__sigsetjmp) #pragma unknown_control_flow(vfork) # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/confdefs.h" # 2 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conffix.h" # 3 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "dos.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "dos.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c". : Preprocess stderr after filtering: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "dos.h" #include ^1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c".: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FCNTL_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FLOAT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib/fcc.pre" #pragma unknown_control_flow(_setjmp) #pragma unknown_control_flow(__setjmp) #pragma unknown_control_flow(__sigsetjmp) #pragma unknown_control_flow(vfork) # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/confdefs.h" # 2 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conffix.h" # 3 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "io.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "io.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c". : Preprocess stderr after filtering: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "io.h" #include ^1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c".: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_MALLOC_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_PWD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_STRINGS_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_UNISTD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_SYSINFO_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib/fcc.pre" #pragma unknown_control_flow(_setjmp) #pragma unknown_control_flow(__setjmp) #pragma unknown_control_flow(__sigsetjmp) #pragma unknown_control_flow(vfork) # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/confdefs.h" # 2 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conffix.h" # 3 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "machine/endian.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "machine/endian.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c". : Preprocess stderr after filtering: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "machine/endian.h" #include ^1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c".: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_PARAM_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_PROCFS_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_RESOURCE_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib/fcc.pre" #pragma unknown_control_flow(_setjmp) #pragma unknown_control_flow(__setjmp) #pragma unknown_control_flow(__sigsetjmp) #pragma unknown_control_flow(vfork) # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/confdefs.h" # 2 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conffix.h" # 3 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "sys/systeminfo.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "sys/systeminfo.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c". : Preprocess stderr after filtering: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "sys/systeminfo.h" #include ^1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c".: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TIMES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_UTSNAME_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_SOCKET_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_WAIT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_NETINET_IN_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_NETDB_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: direct.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib/fcc.pre" #pragma unknown_control_flow(_setjmp) #pragma unknown_control_flow(__setjmp) #pragma unknown_control_flow(__sigsetjmp) #pragma unknown_control_flow(vfork) # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/confdefs.h" # 2 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conffix.h" # 3 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "direct.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "direct.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c". : Preprocess stderr after filtering: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "direct.h" #include ^1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c".: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_TIME_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib/fcc.pre" #pragma unknown_control_flow(_setjmp) #pragma unknown_control_flow(__setjmp) #pragma unknown_control_flow(__sigsetjmp) #pragma unknown_control_flow(vfork) # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/confdefs.h" # 2 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conffix.h" # 3 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "Ws2tcpip.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "Ws2tcpip.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c". : Preprocess stderr after filtering: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "Ws2tcpip.h" #include ^1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c".: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TYPES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib/fcc.pre" #pragma unknown_control_flow(_setjmp) #pragma unknown_control_flow(__setjmp) #pragma unknown_control_flow(__sigsetjmp) #pragma unknown_control_flow(vfork) # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/confdefs.h" # 2 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conffix.h" # 3 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "WindowsX.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "WindowsX.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c". : Preprocess stderr after filtering: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "WindowsX.h" #include ^1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c".: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FLOAT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib/fcc.pre" #pragma unknown_control_flow(_setjmp) #pragma unknown_control_flow(__setjmp) #pragma unknown_control_flow(__sigsetjmp) #pragma unknown_control_flow(vfork) # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/confdefs.h" # 2 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conffix.h" # 3 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "ieeefp.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "ieeefp.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c". : Preprocess stderr after filtering: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "ieeefp.h" #include ^1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c".: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_STDINT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_PTHREAD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: inttypes.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_INTTYPES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: immintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib/fcc.pre" #pragma unknown_control_flow(_setjmp) #pragma unknown_control_flow(__setjmp) #pragma unknown_control_flow(__sigsetjmp) #pragma unknown_control_flow(vfork) # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/confdefs.h" # 2 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conffix.h" # 3 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "immintrin.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "immintrin.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c". : Preprocess stderr after filtering: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "immintrin.h" #include ^1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c".: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: zmmintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib/fcc.pre" #pragma unknown_control_flow(_setjmp) #pragma unknown_control_flow(__setjmp) #pragma unknown_control_flow(__sigsetjmp) #pragma unknown_control_flow(vfork) # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/confdefs.h" # 2 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conffix.h" # 3 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "zmmintrin.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "zmmintrin.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c". : Preprocess stderr after filtering: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "zmmintrin.h" #include ^1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c".: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SETJMP_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib/fcc.pre" #pragma unknown_control_flow(_setjmp) #pragma unknown_control_flow(__setjmp) #pragma unknown_control_flow(__sigsetjmp) #pragma unknown_control_flow(vfork) # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/confdefs.h" # 2 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conffix.h" # 3 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "dos.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "dos.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c". : Preprocess stderr after filtering: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "dos.h" #include ^1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c".: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FCNTL_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FLOAT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib/fcc.pre" #pragma unknown_control_flow(_setjmp) #pragma unknown_control_flow(__setjmp) #pragma unknown_control_flow(__sigsetjmp) #pragma unknown_control_flow(vfork) # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/confdefs.h" # 2 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conffix.h" # 3 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "io.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "io.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c". : Preprocess stderr after filtering: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "io.h" #include ^1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c".: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_MALLOC_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_PWD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_STRINGS_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_UNISTD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_SYSINFO_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib/fcc.pre" #pragma unknown_control_flow(_setjmp) #pragma unknown_control_flow(__setjmp) #pragma unknown_control_flow(__sigsetjmp) #pragma unknown_control_flow(vfork) # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/confdefs.h" # 2 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conffix.h" # 3 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "machine/endian.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "machine/endian.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c". : Preprocess stderr after filtering: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "machine/endian.h" #include ^1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c".: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_PARAM_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_PROCFS_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_RESOURCE_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib/fcc.pre" #pragma unknown_control_flow(_setjmp) #pragma unknown_control_flow(__setjmp) #pragma unknown_control_flow(__sigsetjmp) #pragma unknown_control_flow(vfork) # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/confdefs.h" # 2 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conffix.h" # 3 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "sys/systeminfo.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "sys/systeminfo.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c". : Preprocess stderr after filtering: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "sys/systeminfo.h" #include ^1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c".: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TIMES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_UTSNAME_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_SOCKET_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_WAIT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_NETINET_IN_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_NETDB_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: direct.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib/fcc.pre" #pragma unknown_control_flow(_setjmp) #pragma unknown_control_flow(__setjmp) #pragma unknown_control_flow(__sigsetjmp) #pragma unknown_control_flow(vfork) # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/confdefs.h" # 2 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conffix.h" # 3 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "direct.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "direct.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c". : Preprocess stderr after filtering: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "direct.h" #include ^1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c".: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_TIME_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib/fcc.pre" #pragma unknown_control_flow(_setjmp) #pragma unknown_control_flow(__setjmp) #pragma unknown_control_flow(__sigsetjmp) #pragma unknown_control_flow(vfork) # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/confdefs.h" # 2 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conffix.h" # 3 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "Ws2tcpip.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "Ws2tcpip.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c". : Preprocess stderr after filtering: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "Ws2tcpip.h" #include ^1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c".: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TYPES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib/fcc.pre" #pragma unknown_control_flow(_setjmp) #pragma unknown_control_flow(__setjmp) #pragma unknown_control_flow(__sigsetjmp) #pragma unknown_control_flow(vfork) # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/confdefs.h" # 2 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conffix.h" # 3 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "WindowsX.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "WindowsX.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c". : Preprocess stderr after filtering: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "WindowsX.h" #include ^1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c".: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FLOAT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib/fcc.pre" #pragma unknown_control_flow(_setjmp) #pragma unknown_control_flow(__setjmp) #pragma unknown_control_flow(__sigsetjmp) #pragma unknown_control_flow(vfork) # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/confdefs.h" # 2 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conffix.h" # 3 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "ieeefp.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "ieeefp.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c". : Preprocess stderr after filtering: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "ieeefp.h" #include ^1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c".: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_STDINT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_PTHREAD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: inttypes.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_INTTYPES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: immintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib/fcc.pre" #pragma unknown_control_flow(_setjmp) #pragma unknown_control_flow(__setjmp) #pragma unknown_control_flow(__sigsetjmp) #pragma unknown_control_flow(vfork) # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/confdefs.h" # 2 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conffix.h" # 3 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "immintrin.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "immintrin.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c". : Preprocess stderr after filtering: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "immintrin.h" #include ^1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c".: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: zmmintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib/fcc.pre" #pragma unknown_control_flow(_setjmp) #pragma unknown_control_flow(__setjmp) #pragma unknown_control_flow(__sigsetjmp) #pragma unknown_control_flow(vfork) # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/confdefs.h" # 2 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conffix.h" # 3 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "zmmintrin.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "zmmintrin.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c". : Preprocess stderr after filtering: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "zmmintrin.h" #include ^1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c".: ============================================================================================= TESTING: checkRecursiveMacros from config.headers(config/BuildSystem/config/headers.py:216) Checks that the preprocessor allows recursive macros, and if not defines HAVE_BROKEN_RECURSIVE_MACRO ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void a(int i, int j) {} #define a(b) a(b,__LINE__) int main() { a(0); ; return 0; } child config.headers 4.255977 ============================================================================================= TESTING: configureCacheDetails from config.utilities.cacheDetails(config/BuildSystem/config/utilities/cacheDetails.py:78) Try to determine the size and associativity of the cache. ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { ; return 0; } Skipping determination of LEVEL1_DCACHE_LINESIZE in batch mode, using default 32 Defined "LEVEL1_DCACHE_LINESIZE" to "32" child config.utilities.cacheDetails 0.099845 ============================================================================================= TESTING: check_struct_sigaction from config.types(config/BuildSystem/config/types.py:42) Checks if "struct sigaction" exists in signal.h. This check is for C89 check. Checking for type: struct sigaction ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.types/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.types/conftest.c Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.types/conftest.c", line 11: warning: variable "a" was declared but never referenced struct sigaction a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { struct sigaction a;; return 0; } struct sigaction found Defined "HAVE_STRUCT_SIGACTION" to "1" ============================================================================================= TESTING: check__int64 from config.types(config/BuildSystem/config/types.py:48) Checks if __int64 exists. This is primarily for windows. Checking for type: __int64 ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.types/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.types/conftest.c Possible ERROR while running compiler: exit code 2 stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.types/conftest.c", line 11: error: identifier "__int64" is undefined __int64 a;; ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.types/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { __int64 a;; return 0; } __int64 found ============================================================================================= TESTING: checkSizeTypes from config.types(config/BuildSystem/config/types.py:54) Checks for types associated with sizes, such as size_t. Checking for type: size_t ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.types/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.types/conftest.c Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.types/conftest.c", line 11: warning: variable "a" was declared but never referenced size_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { size_t a;; return 0; } size_t found ============================================================================================= TESTING: checkFileTypes from config.types(config/BuildSystem/config/types.py:64) Checks for types associated with files, such as mode_t, off_t, etc. Checking for type: mode_t ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.types/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.types/conftest.c Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.types/conftest.c", line 11: warning: variable "a" was declared but never referenced mode_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { mode_t a;; return 0; } mode_t found Checking for type: off_t ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.types/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.types/conftest.c Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.types/conftest.c", line 11: warning: variable "a" was declared but never referenced off_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { off_t a;; return 0; } off_t found ============================================================================================= TESTING: checkIntegerTypes from config.types(config/BuildSystem/config/types.py:59) Checks for types associated with integers, such as int32_t. Checking for type: int32_t ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.types/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.types/conftest.c Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.types/conftest.c", line 11: warning: variable "a" was declared but never referenced int32_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { int32_t a;; return 0; } int32_t found ============================================================================================= TESTING: checkPID from config.types(config/BuildSystem/config/types.py:70) Checks for pid_t, and defines it if necessary Checking for type: pid_t ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.types/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.types/conftest.c Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.types/conftest.c", line 11: warning: variable "a" was declared but never referenced pid_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { pid_t a;; return 0; } pid_t found ============================================================================================= TESTING: checkUID from config.types(config/BuildSystem/config/types.py:74) Checks for uid_t and gid_t, and defines them if necessary Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.types /home/ra010009/a04199/petsc-3a1s51fh/config.types/conftest.c ============================================================================================= TESTING: checkC99Complex from config.types(config/BuildSystem/config/types.py:81) Check for complex numbers in in C99 std Note that since PETSc source code uses _Complex we test specifically for that, not complex ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.types/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.types/conftest.c Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.types/conftest.c", line 6: warning: variable "x" was set but never used double _Complex x; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.types/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.types/conftest.c Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.types/conftest.c", line 6: warning: variable "x" was set but never used double _Complex x; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.types/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.types/conftest.o -ldl Defined "HAVE_C99_COMPLEX" to "1" ============================================================================================= TESTING: checkCxxComplex from config.types(config/BuildSystem/config/types.py:92) Check for complex numbers in namespace std ===== Checking linker Executing: mpiFCCpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.types/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -Kfast -fPIC /home/ra010009/a04199/petsc-3a1s51fh/config.types/conftest.cc Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.types/conftest.cc", line 6: warning: variable "x" was declared but never referenced std::complex x; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { std::complex x; ; return 0; } Executing: mpiFCCpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.types/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.types/conftest.o -ldl Defined "HAVE_CXX_COMPLEX" to "1" ============================================================================================= TESTING: checkConst from config.types(config/BuildSystem/config/types.py:103) Checks for working const, and if not found defines it to empty string ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.types/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.types/conftest.c Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.types/conftest.c", line 25: warning: variable "x" is used before its value is set if (x[0]); ^ "/home/ra010009/a04199/petsc-3a1s51fh/config.types/conftest.c", line 30: warning: variable "t" is used before its value is set *t++ = 0; ^ "/home/ra010009/a04199/petsc-3a1s51fh/config.types/conftest.c", line 46: warning: variable "b" is used before its value is set struct s *b; b->j = 5; ^ Source: #include "confdefs.h" #include "conffix.h" int main() { /* Ultrix mips cc rejects this. */ typedef int charset[2]; const charset x; /* SunOS 4.1.1 cc rejects this. */ char const *const *ccp; char **p; /* NEC SVR4.0.2 mips cc rejects this. */ struct point {int x, y;}; static struct point const zero = {0,0}; /* AIX XL C 1.02.0.0 rejects this. It does not let you subtract one const X* pointer from another in an arm of an if-expression whose if-part is not a constant expression */ const char *g = "string"; ccp = &g + (g ? g-g : 0); /* HPUX 7.0 cc rejects these. */ ++ccp; p = (char**) ccp; ccp = (char const *const *) p; /* This section avoids unused variable warnings */ if (zero.x); if (x[0]); { /* SCO 3.2v4 cc rejects this. */ char *t; char const *s = 0 ? (char *) 0 : (char const *) 0; *t++ = 0; if (*s); } { /* Someone thinks the Sun supposedly-ANSI compiler will reject this. */ int x[] = {25, 17}; const int *foo = &x[0]; ++foo; } { /* Sun SC1.0 ANSI compiler rejects this -- but not the above. */ typedef const int *iptr; iptr p = 0; ++p; } { /* AIX XL C 1.02.0.0 rejects this saying "k.c", line 2.27: 1506-025 (S) Operand must be a modifiable lvalue. */ struct s { int j; const int *ap[3]; }; struct s *b; b->j = 5; } { /* ULTRIX-32 V3.1 (Rev 9) vcc rejects this */ const int foo = 10; /* Get rid of unused variable warning */ if (foo); } ; return 0; } ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: void * ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.types/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(void *)==8)*2-1]; Defined "SIZEOF_VOID_P" to "8" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: short ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.types/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(short)==2)*2-1]; Defined "SIZEOF_SHORT" to "2" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: int ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.types/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(int)==4)*2-1]; Defined "SIZEOF_INT" to "4" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.types/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(long)==8)*2-1]; Defined "SIZEOF_LONG" to "8" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long long ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.types/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(long long)==8)*2-1]; Defined "SIZEOF_LONG_LONG" to "8" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: enum ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.types/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(enum{ENUM_DUMMY})==4)*2-1]; Defined "SIZEOF_ENUM" to "4" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: size_t ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.types/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(size_t)==8)*2-1]; Defined "SIZEOF_SIZE_T" to "8" Defined "USING_64BIT_PTR" to "1" ============================================================================================= TESTING: checkVisibility from config.types(config/BuildSystem/config/types.py:193) ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.types/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { __attribute__((visibility ("default"))) int foo(void);; return 0; } Defined "USE_VISIBILITY_C" to "1" ===== Checking compiler Executing: mpiFCCpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.types/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -Kfast -fPIC /home/ra010009/a04199/petsc-3a1s51fh/config.types/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { __attribute__((visibility ("default"))) int foo(void);; return 0; } Defined "USE_VISIBILITY_CXX" to "1" ============================================================================================= TESTING: checkMaxPathLen from config.types(config/BuildSystem/config/types.py:215) Determining PETSC_MAX_PATH_LEN ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.types/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(MAXPATHLEN) # define PETSC_MAX_PATH_LEN MAXPATHLEN #elif defined(MAX_PATH) # define PETSC_MAX_PATH_LEN MAX_PATH #elif defined(_MAX_PATH) # define PETSC_MAX_PATH_LEN _MAX_PATH #else # define PETSC_MAX_PATH_LEN 4096 #endif #define xstr(s) str(s) #define str(s) #s char petsc_max_path_len[] = xstr(PETSC_MAX_PATH_LEN); int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(MAXPATHLEN) # define PETSC_MAX_PATH_LEN MAXPATHLEN #elif defined(MAX_PATH) # define PETSC_MAX_PATH_LEN MAX_PATH #elif defined(_MAX_PATH) # define PETSC_MAX_PATH_LEN _MAX_PATH #else # define PETSC_MAX_PATH_LEN 4096 #endif #define xstr(s) str(s) #define str(s) #s char petsc_max_path_len[] = xstr(PETSC_MAX_PATH_LEN); Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.types /home/ra010009/a04199/petsc-3a1s51fh/config.types/conftest.c Defined "MAX_PATH_LEN" to "4096" child config.types 7.188619 ============================================================================================= TESTING: configureMemAlign from PETSc.options.memAlign(config/PETSc/options/memAlign.py:29) Choose alignment Defined "MEMALIGN" to "16" Memory alignment is 16 child PETSc.options.memAlign 0.001544 ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -lfpe -ldl Possible ERROR while running linker: exit code 1 stderr: /opt/FJSVxos/devkit/aarch64/bin/aarch64-linux-gnu-ld: cannot find -lfpe ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -lsocket -lnsl -ldl Possible ERROR while running linker: exit code 1 stderr: /opt/FJSVxos/devkit/aarch64/bin/aarch64-linux-gnu-ld: cannot find -lsocket /opt/FJSVxos/devkit/aarch64/bin/aarch64-linux-gnu-ld: cannot find -lnsl ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -lfpe -ldl Possible ERROR while running linker: exit code 1 stderr: /opt/FJSVxos/devkit/aarch64/bin/aarch64-linux-gnu-ld: cannot find -lfpe ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -lsocket -lnsl -ldl Possible ERROR while running linker: exit code 1 stderr: /opt/FJSVxos/devkit/aarch64/bin/aarch64-linux-gnu-ld: cannot find -lsocket /opt/FJSVxos/devkit/aarch64/bin/aarch64-linux-gnu-ld: cannot find -lnsl ============================================================================================= TESTING: checkMath from config.libraries(config/BuildSystem/config/libraries.py:264) Check for sin() in libm, the math library Checking for functions [sin floor log10 pow] in library [''] [] ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include double sin(double); static void _check_sin() { double x,y; scanf("%lf",&x); y = sin(x); printf("%f",y); ; } #include double floor(double); static void _check_floor() { double x,y; scanf("%lf",&x); y = floor(x); printf("%f",y); ; } #include double log10(double); static void _check_log10() { double x,y; scanf("%lf",&x); y = log10(x); printf("%f",y); ; } #include double pow(double, double); static void _check_pow() { double x,y; scanf("%lf",&x); y = pow(x,x); printf("%f",y); ; } int main() { _check_sin(); _check_floor(); _check_log10(); _check_pow();; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -ldl CheckMath: using math library [] ============================================================================================= TESTING: checkMathErf from config.libraries(config/BuildSystem/config/libraries.py:283) Check for erf() in libm, the math library Checking for functions [erf] in library [] [] ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.c Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.c", line 5: warning: variable "y" was set but never used static void _check_erf() { double (*checkErf)(double) = erf;double x = 0,y; y = (*checkErf)(x); } ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_erf() { double (*checkErf)(double) = erf;double x = 0,y; y = (*checkErf)(x); } int main() { _check_erf();; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -ldl erf() found Defined "HAVE_ERF" to "1" ============================================================================================= TESTING: checkMathTgamma from config.libraries(config/BuildSystem/config/libraries.py:292) Check for tgamma() in libm, the math library Checking for functions [tgamma] in library [] [] ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.c Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.c", line 5: warning: variable "y" was set but never used static void _check_tgamma() { double (*checkTgamma)(double) = tgamma;double x = 0,y; y = (*checkTgamma)(x); } ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_tgamma() { double (*checkTgamma)(double) = tgamma;double x = 0,y; y = (*checkTgamma)(x); } int main() { _check_tgamma();; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -ldl tgamma() found Defined "HAVE_TGAMMA" to "1" ============================================================================================= TESTING: checkMathLgamma from config.libraries(config/BuildSystem/config/libraries.py:301) Check for lgamma() in libm, the math library Checking for functions [lgamma] in library [] [] ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include #include static void _check_lgamma() { double (*checkLgamma)(double) = lgamma;double x = 1,y; y = (*checkLgamma)(x);if (y != 0.) abort(); } int main() { _check_lgamma();; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -ldl lgamma() found Defined "HAVE_LGAMMA" to "1" ============================================================================================= TESTING: checkMathFenv from config.libraries(config/BuildSystem/config/libraries.py:314) Checks if can be used with FE_DFL_ENV Checking for functions [fesetenv] in library [] [] ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_fesetenv() { fesetenv(FE_DFL_ENV);; } int main() { _check_fesetenv();; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -ldl Defined "HAVE_FENV_H" to "1" ============================================================================================= TESTING: checkMathLog2 from config.libraries(config/BuildSystem/config/libraries.py:322) Check for log2() in libm, the math library Checking for functions [log2] in library [] [] ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_log2() { double (*checkLog2)(double) = log2; double x = 2.5, y = (*checkLog2)(x); } int main() { _check_log2();; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -ldl log2() found Defined "HAVE_LOG2" to "1" ============================================================================================= TESTING: checkRealtime from config.libraries(config/BuildSystem/config/libraries.py:331) Check for presence of clock_gettime() in realtime library (POSIX Realtime extensions) Checking for functions [clock_gettime] in library [''] [] ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_clock_gettime() { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; } int main() { _check_clock_gettime();; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -ldl realtime functions are linked in by default ============================================================================================= TESTING: checkDynamic from config.libraries(config/BuildSystem/config/libraries.py:347) Check for the header and libraries necessary for dynamic library manipulation Checking for functions [dlopen] in library ['dl'] [] ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } int main() { _check_dlopen();; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -ldl -ldl Defined "HAVE_LIBDL" to "1" Checking for header: dlfcn.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.types /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_DLFCN_H" to "1" child config.libraries 31.580428 ============================================================================================= TESTING: configureLibraryOptions from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:38) Sets PETSC_USE_DEBUG, PETSC_USE_INFO, PETSC_USE_LOG, PETSC_USE_CTABLE, PETSC_USE_FORTRAN_KERNELS, and PETSC_USE_AVX512_KERNELS Defined "USE_LOG" to "1" Executing: mpifccpx -qversion Defined "USE_MALLOC_COALESCED" to "1" Defined "USE_INFO" to "1" Defined "USE_CTABLE" to "1" Defined "USE_BACKWARD_LOOP" to "1" **********Checking if running on BGL/IBM detected Checking for functions [bgl_perfctr_void] in library [''] [] ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char bgl_perfctr_void(); static void _check_bgl_perfctr_void() { bgl_perfctr_void(); } int main() { _check_bgl_perfctr_void();; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -ldl Possible ERROR while running linker: exit code 1 stderr: /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o: In function `_check_bgl_perfctr_void': /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.c:5: undefined reference to `bgl_perfctr_void' Checking for functions [ADIOI_BGL_Open] in library [''] [] ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ADIOI_BGL_Open(); static void _check_ADIOI_BGL_Open() { ADIOI_BGL_Open(); } int main() { _check_ADIOI_BGL_Open();; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -ldl Possible ERROR while running linker: exit code 1 stderr: /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o: In function `_check_ADIOI_BGL_Open': /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.c:5: undefined reference to `ADIOI_BGL_Open' *********BGL/IBM test failure Defined "USE_AVX512_KERNELS" to "1" Defined "Alignx(a,b)" to " " ============================================================================================= TESTING: configureISColorValueType from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:99) Sets PETSC_IS_COLORING_VALUE_TYPE, PETSC_MPIU_IS_COLORING_VALUE_TYPE, and PETSC_IS_COLORING_MAX as required by ISColoring Defined "MPIU_IS_COLORING_VALUE_TYPE" to "MPI_UNSIGNED_SHORT" Defined "IS_COLORING_MAX" to "USHRT_MAX" Defined "IS_COLORING_VALUE_TYPE" to "short" Defined "IS_COLORING_VALUE_TYPE_F" to "integer2" child PETSc.options.libraryOptions 9.218028 child config.atomics 0.000013 ============================================================================================= TESTING: checkSysinfo from config.functions(config/BuildSystem/config/functions.py:106) Check whether sysinfo takes three arguments, and if it does define HAVE_SYSINFO_3ARG Checking for functions [sysinfo] ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysinfo(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sysinfo) || defined (__stub___sysinfo) sysinfo_will_always_fail_with_ENOSYS(); #else sysinfo(); #endif ; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -ldl Defined "HAVE_SYSINFO" to "1" ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c Possible ERROR while running compiler: exit code 4 stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c", line 9: catastrophic error: #error directive: "Cannot check sysinfo without special headers" # error "Cannot check sysinfo without special headers" ^ 1 catastrophic error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c". Compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #ifdef HAVE_SYS_SYSINFO_H # include #elif defined(HAVE_SYS_SYSTEMINFO_H) # include #else # error "Cannot check sysinfo without special headers" #endif int main() { char buf[10]; long count=10; sysinfo(1, buf, count); ; return 0; } Compile failed inside link ============================================================================================= TESTING: checkVPrintf from config.functions(config/BuildSystem/config/functions.py:125) Checks whether vprintf requires a char * last argument, and if it does defines HAVE_VPRINTF_CHAR ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c", line 8: warning: variable "Argp" is used before its value is set vprintf( "%d", Argp ); ^ Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vprintf( "%d", Argp ); ; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -ldl ============================================================================================= TESTING: checkVFPrintf from config.functions(config/BuildSystem/config/functions.py:131) Checks whether vfprintf requires a char * last argument, and if it does defines HAVE_VFPRINTF_CHAR ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c", line 8: warning: variable "Argp" is used before its value is set vfprintf(stdout, "%d", Argp ); ^ Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vfprintf(stdout, "%d", Argp ); ; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -ldl ============================================================================================= TESTING: checkVSNPrintf from config.functions(config/BuildSystem/config/functions.py:137) Checks whether vsnprintf requires a char * last argument, and if it does defines HAVE_VSNPRINTF_CHAR ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c", line 8: warning: variable "Argp" is used before its value is set vsnprintf(str,5, "%d", Argp ); ^ Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp;char str[6]; vsnprintf(str,5, "%d", Argp ); ; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -ldl Defined "HAVE_VSNPRINTF" to "1" ============================================================================================= TESTING: checkNanosleep from config.functions(config/BuildSystem/config/functions.py:167) Check for functional nanosleep() - as time.h behaves differently for different compiler flags - like -std=c89 ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { struct timespec tp; tp.tv_sec = 0; tp.tv_nsec = (long)(1e9); nanosleep(&tp,0); ; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -ldl Defined "HAVE_NANOSLEEP" to "1" ============================================================================================= TESTING: checkMemmove from config.functions(config/BuildSystem/config/functions.py:173) Check for functional memmove() - as MS VC requires correct includes to for this test ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { char c1[1], c2[1] = "c"; size_t n=1; memmove(c1,c2,n); ; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -ldl Defined "HAVE_MEMMOVE" to "1" ============================================================================================= TESTING: checkSignalHandlerType from config.functions(config/BuildSystem/config/functions.py:143) Checks the type of C++ signals handlers, and defines SIGNAL_CAST to the correct value ===== Checking linker Executing: mpiFCCpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -Kfast -fPIC /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include static void myhandler(int sig) {} int main() { signal(SIGFPE,myhandler); ; return 0; } Executing: mpiFCCpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -ldl Defined "SIGNAL_CAST" to " " ============================================================================================= TESTING: checkFreeReturnType from config.functions(config/BuildSystem/config/functions.py:153) Checks whether free returns void or int, and defines HAVE_FREE_RETURN_INT ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c Possible ERROR while running compiler: exit code 2 stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c", line 6: warning: variable "p" is used before its value is set int ierr; void *p; ierr = free(p); return 0; ^ "/home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c", line 6: error: a value of type "void" cannot be assigned to an entity of type "int" int ierr; void *p; ierr = free(p); return 0; ^ "/home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c", line 8: warning: statement is unreachable return 0; ^ "/home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c", line 6: warning: variable "ierr" was set but never used int ierr; void *p; ierr = free(p); return 0; ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ierr; void *p; ierr = free(p); return 0; ; return 0; } Compile failed inside link ============================================================================================= TESTING: checkVariableArgumentLists from config.functions(config/BuildSystem/config/functions.py:159) Checks whether the variable argument list functionality is working ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c", line 7: warning: variable "l2" is used before its value is set va_copy(l1, l2); ^ in expansion of macro "va_copy" at line 7 "/home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c", line 10: warning: statement is unreachable return 0; ^ "/home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c", line 6: warning: variable "l1" was set but never used va_list l1, l2; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { va_list l1, l2; va_copy(l1, l2); return 0; ; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -ldl Defined "HAVE_VA_COPY" to "1" ============================================================================================= TESTING: checkClassify from config.functions(config/BuildSystem/config/functions.py:85) Recursive decompose to rapidly classify functions as found or missing To confirm that a function is missing, we require a compile/link failure with only that function in a compilation unit. In contrast, we can confirm that many functions are present by compiling them all together in a large compilation unit. We optimistically compile everything together, then trim all functions that were named in the error message and bisect the result. The trimming is only an optimization to increase the likelihood of a big-batch compile succeeding; we do not rely on the compiler naming missing functions. Checking for functions [bzero gethostbyname sbreak getpagesize gethostname _access _sleep clock usleep rand memalign _set_output_format realpath dlsym fpresetsticky strcasecmp drand48 PXFGETARG socket getwd uname snprintf dlerror time getdomainname getrusage lseek _pipe getcwd _snprintf readlink fork fpsetsticky dlclose _getcwd sleep stricmp dlopen _mkdir popen _lseek access] ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char bzero(); char gethostbyname(); char sbreak(); char getpagesize(); char gethostname(); char _access(); char _sleep(); char clock(); char usleep(); char rand(); char memalign(); char _set_output_format(); char realpath(); char dlsym(); char fpresetsticky(); char strcasecmp(); char drand48(); char PXFGETARG(); char socket(); char getwd(); char uname(); char snprintf(); char dlerror(); char time(); char getdomainname(); char getrusage(); char lseek(); char _pipe(); char getcwd(); char _snprintf(); char readlink(); char fork(); char fpsetsticky(); char dlclose(); char _getcwd(); char sleep(); char stricmp(); char dlopen(); char _mkdir(); char popen(); char _lseek(); char access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_fpresetsticky) || defined (__stub___fpresetsticky) fpresetsticky_will_always_fail_with_ENOSYS(); #else fpresetsticky(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif #if defined (__stub__pipe) || defined (__stub____pipe) _pipe_will_always_fail_with_ENOSYS(); #else _pipe(); #endif #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_fpsetsticky) || defined (__stub___fpsetsticky) fpsetsticky_will_always_fail_with_ENOSYS(); #else fpsetsticky(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub__mkdir) || defined (__stub____mkdir) _mkdir_will_always_fail_with_ENOSYS(); #else _mkdir(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif ; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -ldl Possible ERROR while running linker: exit code 1 stderr: /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o: In function `main': /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c:179: warning: the `getwd' function is dangerous and should not be used. /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c:77: undefined reference to `sbreak' /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c:95: undefined reference to `_access' /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c:101: undefined reference to `_sleep' /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c:131: undefined reference to `_set_output_format' /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c:149: undefined reference to `fpresetsticky' /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c:167: undefined reference to `PXFGETARG' /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c:227: undefined reference to `_pipe' /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c:239: undefined reference to `_snprintf' /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c:257: undefined reference to `fpsetsticky' /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c:269: undefined reference to `_getcwd' /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c:281: undefined reference to `stricmp' /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c:293: undefined reference to `_mkdir' /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c:305: undefined reference to `_lseek' Checking for functions [bzero gethostbyname getpagesize gethostname clock usleep rand memalign realpath dlsym strcasecmp] ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char bzero(); char gethostbyname(); char getpagesize(); char gethostname(); char clock(); char usleep(); char rand(); char memalign(); char realpath(); char dlsym(); char strcasecmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif ; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -ldl Defined "HAVE_BZERO" to "1" Defined "HAVE_GETHOSTBYNAME" to "1" Defined "HAVE_GETPAGESIZE" to "1" Defined "HAVE_GETHOSTNAME" to "1" Defined "HAVE_CLOCK" to "1" Defined "HAVE_USLEEP" to "1" Defined "HAVE_RAND" to "1" Defined "HAVE_MEMALIGN" to "1" Defined "HAVE_REALPATH" to "1" Defined "HAVE_DLSYM" to "1" Defined "HAVE_STRCASECMP" to "1" Checking for functions [drand48 socket uname dlerror time getdomainname getrusage readlink fork dlclose dlopen popen] ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char drand48(); char socket(); char uname(); char dlerror(); char time(); char getdomainname(); char getrusage(); char readlink(); char fork(); char dlclose(); char dlopen(); char popen(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif ; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -ldl Defined "HAVE_DRAND48" to "1" Defined "HAVE_SOCKET" to "1" Defined "HAVE_UNAME" to "1" Defined "HAVE_DLERROR" to "1" Defined "HAVE_TIME" to "1" Defined "HAVE_GETDOMAINNAME" to "1" Defined "HAVE_GETRUSAGE" to "1" Defined "HAVE_READLINK" to "1" Defined "HAVE_FORK" to "1" Defined "HAVE_DLCLOSE" to "1" Defined "HAVE_DLOPEN" to "1" Defined "HAVE_POPEN" to "1" Checking for functions [sbreak] ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif ; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -ldl Possible ERROR while running linker: exit code 1 stderr: /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o: In function `main': /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c:24: undefined reference to `sbreak' Checking for functions [_access] ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif ; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -ldl Possible ERROR while running linker: exit code 1 stderr: /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o: In function `main': /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c:24: undefined reference to `_access' Checking for functions [_sleep] ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif ; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -ldl Possible ERROR while running linker: exit code 1 stderr: /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o: In function `main': /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c:24: undefined reference to `_sleep' Checking for functions [_set_output_format] ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _set_output_format(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif ; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -ldl Possible ERROR while running linker: exit code 1 stderr: /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o: In function `main': /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c:24: undefined reference to `_set_output_format' Checking for functions [fpresetsticky] ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fpresetsticky(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fpresetsticky) || defined (__stub___fpresetsticky) fpresetsticky_will_always_fail_with_ENOSYS(); #else fpresetsticky(); #endif ; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -ldl Possible ERROR while running linker: exit code 1 stderr: /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o: In function `main': /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c:24: undefined reference to `fpresetsticky' Checking for functions [PXFGETARG] ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif ; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -ldl Possible ERROR while running linker: exit code 1 stderr: /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o: In function `main': /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c:24: undefined reference to `PXFGETARG' Checking for functions [getwd] ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif ; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -ldl Possible ERROR while running linker: stderr: /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o: In function `main': /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c:24: warning: the `getwd' function is dangerous and should not be used. Defined "HAVE_GETWD" to "1" Checking for functions [snprintf] ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif ; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -ldl Defined "HAVE_SNPRINTF" to "1" Checking for functions [lseek] ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif ; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -ldl Defined "HAVE_LSEEK" to "1" Checking for functions [_pipe] ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _pipe(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__pipe) || defined (__stub____pipe) _pipe_will_always_fail_with_ENOSYS(); #else _pipe(); #endif ; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -ldl Possible ERROR while running linker: exit code 1 stderr: /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o: In function `main': /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c:24: undefined reference to `_pipe' Checking for functions [getcwd] ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif ; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -ldl Defined "HAVE_GETCWD" to "1" Checking for functions [_snprintf] ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif ; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -ldl Possible ERROR while running linker: exit code 1 stderr: /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o: In function `main': /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c:24: undefined reference to `_snprintf' Checking for functions [fpsetsticky] ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fpsetsticky(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fpsetsticky) || defined (__stub___fpsetsticky) fpsetsticky_will_always_fail_with_ENOSYS(); #else fpsetsticky(); #endif ; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -ldl Possible ERROR while running linker: exit code 1 stderr: /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o: In function `main': /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c:24: undefined reference to `fpsetsticky' Checking for functions [_getcwd] ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif ; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -ldl Possible ERROR while running linker: exit code 1 stderr: /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o: In function `main': /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c:24: undefined reference to `_getcwd' Checking for functions [sleep] ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif ; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -ldl Defined "HAVE_SLEEP" to "1" Checking for functions [stricmp] ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -ldl Possible ERROR while running linker: exit code 1 stderr: /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o: In function `main': /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c:24: undefined reference to `stricmp' Checking for functions [_mkdir] ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _mkdir(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__mkdir) || defined (__stub____mkdir) _mkdir_will_always_fail_with_ENOSYS(); #else _mkdir(); #endif ; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -ldl Possible ERROR while running linker: exit code 1 stderr: /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o: In function `main': /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c:24: undefined reference to `_mkdir' Checking for functions [_lseek] ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif ; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -ldl Possible ERROR while running linker: exit code 1 stderr: /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o: In function `main': /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c:24: undefined reference to `_lseek' Checking for functions [access] ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif ; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -ldl Defined "HAVE_ACCESS" to "1" ============================================================================================= TESTING: checkMmap from config.functions(config/BuildSystem/config/functions.py:179) Check for functional mmap() to allocate shared memory and define HAVE_MMAP ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { int fd; fd=open("/tmp/file",O_RDWR); mmap((void*)0,100,PROT_READ|PROT_WRITE,MAP_SHARED,fd,0); ; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.functions/conftest.o -ldl Defined "HAVE_MMAP" to "1" child config.functions 113.232671 ============================================================================================= TESTING: configureMemorySize from config.utilities.getResidentSetSize(config/BuildSystem/config/utilities/getResidentSetSize.py:31) Try to determine how to measure the memory usage child config.utilities.getResidentSetSize 0.001718 child config.utilities.fortranCommandLine 0.000010 ============================================================================================= TESTING: configureFPTrap from config.utilities.FPTrap(config/BuildSystem/config/utilities/FPTrap.py:27) Checking the handling of floating point traps Checking for header: sigfpe.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.types /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib/fcc.pre" #pragma unknown_control_flow(_setjmp) #pragma unknown_control_flow(__setjmp) #pragma unknown_control_flow(__sigsetjmp) #pragma unknown_control_flow(vfork) # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/confdefs.h" # 2 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conffix.h" # 3 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "sigfpe.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "sigfpe.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c". : Preprocess stderr after filtering: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "sigfpe.h" #include ^1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c".: Checking for header: fpxcp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.types /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib/fcc.pre" #pragma unknown_control_flow(_setjmp) #pragma unknown_control_flow(__setjmp) #pragma unknown_control_flow(__sigsetjmp) #pragma unknown_control_flow(vfork) # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/confdefs.h" # 2 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conffix.h" # 3 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "fpxcp.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "fpxcp.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c". : Preprocess stderr after filtering: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "fpxcp.h" #include ^1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c".: Checking for header: floatingpoint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.types /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib/fcc.pre" #pragma unknown_control_flow(_setjmp) #pragma unknown_control_flow(__setjmp) #pragma unknown_control_flow(__sigsetjmp) #pragma unknown_control_flow(vfork) # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/confdefs.h" # 2 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conffix.h" # 3 "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c" stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "floatingpoint.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "floatingpoint.h" #include ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c". : Preprocess stderr after filtering: "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c", line 3: error: cannot open source file "floatingpoint.h" #include ^1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c".: child config.utilities.FPTrap 0.136551 ============================================================================================= TESTING: configureFeatureTestMacros from config.utilities.featureTestMacros(config/BuildSystem/config/utilities/featureTestMacros.py:13) Checks if certain feature test macros are support ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros/conftest.c Possible ERROR while running compiler: exit code 4 stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros/conftest.c", line 4: catastrophic error: cannot open source file "sysctl.h" #include ^ 1 catastrophic error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros/conftest.c". Compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #define _POSIX_C_SOURCE 200112L #include int main() { ; return 0; } ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #include int main() { ; return 0; } Defined "_BSD_SOURCE" to "1" ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _DEFAULT_SOURCE #include int main() { ; return 0; } Defined "_DEFAULT_SOURCE" to "1" ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include int main() { cpu_set_t mset; CPU_ZERO(&mset);; return 0; } Defined "_GNU_SOURCE" to "1" ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include #include int main() { Dl_info info; if (dladdr(exit, &info));; return 0; } Defined "_GNU_SOURCE" to "1" child config.utilities.featureTestMacros 0.553459 ============================================================================================= TESTING: configureMissingUtypeTypedefs from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:55) Checks if u_short is undefined ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing/conftest.c", line 6: warning: variable "foo" was declared but never referenced u_short foo; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { u_short foo; ; return 0; } ============================================================================================= TESTING: configureMissingFunctions from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:61) Checks for SOCKETS ============================================================================================= TESTING: configureMissingSignals from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:79) Check for missing signals, and define MISSING_ if necessary ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGABRT; if (i); ; return 0; } ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGALRM; if (i); ; return 0; } ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGBUS; if (i); ; return 0; } ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCHLD; if (i); ; return 0; } ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCONT; if (i); ; return 0; } ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGFPE; if (i); ; return 0; } ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGHUP; if (i); ; return 0; } ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGILL; if (i); ; return 0; } ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGINT; if (i); ; return 0; } ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGKILL; if (i); ; return 0; } ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGPIPE; if (i); ; return 0; } ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGQUIT; if (i); ; return 0; } ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSEGV; if (i); ; return 0; } ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSTOP; if (i); ; return 0; } ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSYS; if (i); ; return 0; } ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTERM; if (i); ; return 0; } ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTRAP; if (i); ; return 0; } ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTSTP; if (i); ; return 0; } ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGURG; if (i); ; return 0; } ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR1; if (i); ; return 0; } ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR2; if (i); ; return 0; } ============================================================================================= TESTING: configureMissingGetdomainnamePrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:96) ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } ===== Checking linker Executing: mpiFCCpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -Kfast -fPIC /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Executing: mpiFCCpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing/conftest.o -ldl ============================================================================================= TESTING: configureMissingSrandPrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:121) ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #include int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } ===== Checking linker Executing: mpiFCCpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -Kfast -fPIC /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #include int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Executing: mpiFCCpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing/conftest.o -ldl child config.utilities.missing 6.777331 ============================================================================================= TESTING: checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:34) ============================================================================================= TESTING: configureSharedLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:49) Checks whether shared libraries should be used, for which you must - Specify --with-shared-libraries - Have found a working shared linker Defines PETSC_USE_SHARED_LIBRARIES if they are used Executing: uname -s stdout: Linux Defined make rule "shared_arch" with dependencies "shared_linux" and code [] Defined make macro "SONAME_FUNCTION" to "$(1).so.$(2)" Defined make macro "SL_LINKER_FUNCTION" to "-shared -Wl,-soname,$(call SONAME_FUNCTION,$(notdir $(1)),$(2))" Executing: mpifccpx -v Defined make macro "BUILDSHAREDLIB" to "yes" Defined "USE_SHARED_LIBRARIES" to "1" ============================================================================================= TESTING: configureDynamicLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:94) Checks whether dynamic loading is available (with dlfcn.h and libdl) Defined "HAVE_DYNAMIC_LIBRARIES" to "1" ============================================================================================= TESTING: configureSerializedFunctions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:100) Defines PETSC_SERIALIZE_FUNCTIONS if they are used Requires shared libraries ============================================================================================= TESTING: checkSymbolResolution from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:109) Checks that dladdr() works ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.sharedLibraries/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.sharedLibraries -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.sharedLibraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include #include int main() { Dl_info info; if (dladdr(exit, &info)); ; return 0; } Defined "HAVE_DLADDR" to "1" child PETSc.options.sharedLibraries 0.158431 ============================================================================================= TESTING: configureScalarType from PETSc.options.scalarTypes(config/PETSc/options/scalarTypes.py:40) Choose between real and complex numbers Scalar type is real ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnormal(b); ; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes/conftest.o -ldl Defined "HAVE_ISNORMAL" to "1" ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnan(b); ; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes/conftest.o -ldl Defined "HAVE_ISNAN" to "1" ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isinf(b); ; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes/conftest.o -ldl Defined "HAVE_ISINF" to "1" ============================================================================================= TESTING: configurePrecision from PETSc.options.scalarTypes(config/PETSc/options/scalarTypes.py:81) Set the default real number precision for PETSc objects Checking C compiler works with __float128 Checking for functions [logq] in library ['quadmath'] [] ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.c Possible ERROR while running compiler: exit code 4 stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.c", line 4: catastrophic error: cannot open source file "quadmath.h" #include ^ 1 catastrophic error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.c". Compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_logq() { __float128 f; logq(f);; } int main() { _check_logq();; return 0; } Compile failed inside link Defined "USE_REAL_DOUBLE" to "1" Defined make macro "PETSC_SCALAR_SIZE" to "64" Precision is double child PETSc.options.scalarTypes 3.312476 ============================================================================================= TESTING: configureMkdir from config.programs(config/BuildSystem/config/programs.py:22) Make sure we can have mkdir automatically make intermediate directories Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/mkdir...not found Checking for program /opt/local/openssh/bin/mkdir...not found Checking for program /usr/share/Modules/bin/mkdir...not found Checking for program /opt/local/openssh/bin/mkdir...not found Checking for program /usr/local/bin/mkdir...not found Checking for program /bin/mkdir...found Executing: /bin/mkdir -p .conftest/tmp Adding -p flag to /bin/mkdir -p to automatically create directories Defined make macro "MKDIR" to "/bin/mkdir -p" ============================================================================================= TESTING: configureAutoreconf from config.programs(config/BuildSystem/config/programs.py:44) Check for autoreconf Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/autoreconf...not found Checking for program /opt/local/openssh/bin/autoreconf...not found Checking for program /usr/share/Modules/bin/autoreconf...not found Checking for program /opt/local/openssh/bin/autoreconf...not found Checking for program /usr/local/bin/autoreconf...not found Checking for program /bin/autoreconf...found Executing: ['/bin/autoreconf'] autoreconf test successful! Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/libtoolize...not found Checking for program /opt/local/openssh/bin/libtoolize...not found Checking for program /usr/share/Modules/bin/libtoolize...not found Checking for program /opt/local/openssh/bin/libtoolize...not found Checking for program /usr/local/bin/libtoolize...not found Checking for program /bin/libtoolize...found ============================================================================================= TESTING: configurePrograms from config.programs(config/BuildSystem/config/programs.py:71) Check for the programs needed to build and run PETSc Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/bash...not found Checking for program /opt/local/openssh/bin/bash...not found Checking for program /usr/share/Modules/bin/bash...not found Checking for program /opt/local/openssh/bin/bash...not found Checking for program /usr/local/bin/bash...not found Checking for program /bin/bash...found Defined make macro "SHELL" to "/bin/bash" Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/sed...not found Checking for program /opt/local/openssh/bin/sed...not found Checking for program /usr/share/Modules/bin/sed...not found Checking for program /opt/local/openssh/bin/sed...not found Checking for program /usr/local/bin/sed...not found Checking for program /bin/sed...found Defined make macro "SED" to "/bin/sed" Executing: /bin/sed -i s/sed/sd/g "/home/ra010009/a04199/petsc-3a1s51fh/config.programs/sed1" Adding SEDINPLACE cmd: /bin/sed -i Defined make macro "SEDINPLACE" to "/bin/sed -i" Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/mv...not found Checking for program /opt/local/openssh/bin/mv...not found Checking for program /usr/share/Modules/bin/mv...not found Checking for program /opt/local/openssh/bin/mv...not found Checking for program /usr/local/bin/mv...not found Checking for program /bin/mv...found Defined make macro "MV" to "/bin/mv" Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/cp...not found Checking for program /opt/local/openssh/bin/cp...not found Checking for program /usr/share/Modules/bin/cp...not found Checking for program /opt/local/openssh/bin/cp...not found Checking for program /usr/local/bin/cp...not found Checking for program /bin/cp...found Defined make macro "CP" to "/bin/cp" Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/grep...not found Checking for program /opt/local/openssh/bin/grep...not found Checking for program /usr/share/Modules/bin/grep...not found Checking for program /opt/local/openssh/bin/grep...not found Checking for program /usr/local/bin/grep...not found Checking for program /bin/grep...found Defined make macro "GREP" to "/bin/grep" Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/rm...not found Checking for program /opt/local/openssh/bin/rm...not found Checking for program /usr/share/Modules/bin/rm...not found Checking for program /opt/local/openssh/bin/rm...not found Checking for program /usr/local/bin/rm...not found Checking for program /bin/rm...found Defined make macro "RM" to "/bin/rm -f" Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/diff...not found Checking for program /opt/local/openssh/bin/diff...not found Checking for program /usr/share/Modules/bin/diff...not found Checking for program /opt/local/openssh/bin/diff...not found Checking for program /usr/local/bin/diff...not found Checking for program /bin/diff...found Executing: "/bin/diff" -w "/home/ra010009/a04199/petsc-3a1s51fh/config.programs/diff1" "/home/ra010009/a04199/petsc-3a1s51fh/config.programs/diff2" Defined make macro "DIFF" to "/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /home/ra010009/a04199/petsc/lib/petsc/bin/win32fe/ps...not found Unable to find programs ['ps'] providing listing of the specific search path Warning accessing /usr/ucb gives errors: must be str, not builtin_function_or_method Warning accessing /usr/usb gives errors: must be str, not builtin_function_or_method Defined make macro "PYTHON" to "/bin/python" Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/m4...not found Checking for program /opt/local/openssh/bin/m4...not found Checking for program /usr/share/Modules/bin/m4...not found Checking for program /opt/local/openssh/bin/m4...not found Checking for program /usr/local/bin/m4...not found Checking for program /bin/m4...found Defined make macro "M4" to "/bin/m4" child config.programs 3.277722 ============================================================================================= TESTING: consistencyChecks from config.packages.make(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.make(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default ============================================================================================= TESTING: configureMake from config.packages.make(config/BuildSystem/config/packages/make.py:96) Check Guesses for GNU make Executing: gmake --version stdout: GNU Make 4.2.1 Built for x86_64-redhat-linux-gnu Copyright (C) 1988-2016 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/gmake...not found Checking for program /opt/local/openssh/bin/gmake...not found Checking for program /usr/share/Modules/bin/gmake...not found Checking for program /opt/local/openssh/bin/gmake...not found Checking for program /usr/local/bin/gmake...not found Checking for program /bin/gmake...found Defined make macro "MAKE" to "/bin/gmake" Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/make...not found Checking for program /opt/local/openssh/bin/make...not found Checking for program /usr/share/Modules/bin/make...not found Checking for program /opt/local/openssh/bin/make...not found Checking for program /usr/local/bin/make...not found Checking for program /bin/make...found Defined make macro "MAKE_USER" to "make" ============================================================================================= TESTING: setupGNUMake from config.packages.make(config/BuildSystem/config/packages/make.py:150) Setup other GNU make stuff Executing: uname -s stdout: Linux Executing: uname -s stdout: Linux Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC})" and code [] Defined make rule "libcxx" with dependencies "${LIBNAME}(${OBJSCXX})" and code [] Defined make rule "libcu" with dependencies "${LIBNAME}(${OBJSCU})" and code [] Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} Defined make macro "OMAKE_PRINTDIR " to "/bin/gmake --print-directory" Defined make macro "OMAKE" to "/bin/gmake --no-print-directory" Defined make macro "MAKE_PAR_OUT_FLG" to "--output-sync=recurse" ============================================================================================= TESTING: configureMakeNP from config.packages.make(config/BuildSystem/config/packages/make.py:197) check no of cores on the build machine [perhaps to do make '-j ncores'] module multiprocessing found 64 cores: using make_np = 40 using user-provided make_np = 8 Defined make macro "MAKE_NP" to "8" Defined make macro "MAKE_TEST_NP" to "27" Defined make macro "MAKE_LOAD" to "96.0" Defined make macro "NPMAX" to "64" child config.packages.make 0.026729 ============================================================================================= TESTING: consistencyChecks from config.packages.X(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.X(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.X(config/BuildSystem/config/package.py:897) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional X Checking for library in Compiler specific search X: [] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [XSetWMName] in library [] [] ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char XSetWMName(); static void _check_XSetWMName() { XSetWMName(); } int main() { _check_XSetWMName();; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -ldl Possible ERROR while running linker: exit code 1 stderr: /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o: In function `_check_XSetWMName': /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.c:5: undefined reference to `XSetWMName' Checking for library in Compiler specific search X: ['libX11.a'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [XSetWMName] in library ['libX11.a'] [] ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char XSetWMName(); static void _check_XSetWMName() { XSetWMName(); } int main() { _check_XSetWMName();; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -lX11 -ldl Defined "HAVE_LIBX11" to "1" Checking for optional headers [] in Compiler specific search X: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in [] Found header files [] in [] Checking for headers ['X11/Xlib.h'] in Compiler specific search X: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['X11/Xlib.h'] in [] Checking include with compiler flags var CPPFLAGS [] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.types /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['X11/Xlib.h'] in [] ============================================================================================= TESTING: checkVersion from config.packages.X(config/BuildSystem/config/package.py:1026) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version For x unable to run preprocessor to obtain version information, skipping version check ============================================================================================= TESTING: checkSharedLibrary from config.packages.X(config/BuildSystem/config/package.py:955) By default we don't care about checking if the library is shared child config.packages.X 3.368255 ============================================================================================= TESTING: consistencyChecks from config.packages.hwloc(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.hwloc(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.hwloc 0.002034 ============================================================================================= TESTING: consistencyChecks from config.packages.valgrind(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: configureLibrary from config.packages.valgrind(config/BuildSystem/config/package.py:897) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional valgrind Not checking for library in Compiler specific search VALGRIND: [] because no functions given to check for ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for optional headers [] in Compiler specific search VALGRIND: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in [] Found header files [] in [] Checking for headers ['valgrind/valgrind.h'] in Compiler specific search VALGRIND: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in [] Checking include with compiler flags var CPPFLAGS [] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.types /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['valgrind/valgrind.h'] in [] ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { RUNNING_ON_VALGRIND; ; return 0; } Defined "HAVE_VALGRIND" to "1" Executing: uname -s stdout: Linux Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "valgrind/config.h" ;petscpkgver(VERSION); Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind /home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind/conftest.c Possible ERROR while running preprocessor: exit code 2 stdout: # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind/conftest.c" # 1 "/opt/FJSVxtclanga/tcsds-1.2.31/bin/../lib/fcc.pre" #pragma unknown_control_flow(_setjmp) #pragma unknown_control_flow(__setjmp) #pragma unknown_control_flow(__sigsetjmp) #pragma unknown_control_flow(vfork) # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind/conftest.c" # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind/confdefs.h" # 2 "/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind/conftest.c" # 1 "/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind/conffix.h" # 3 "/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind/conftest.c" ;petscpkgver(VERSION); stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind/conftest.c", line 3: error: cannot open source file "valgrind/config.h" #include "valgrind/config.h" ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include "valgrind/config.h" ;petscpkgver(VERSION); For valgrind need <= VERSION <= For valgrind unable to convert version string to tuple, skipping version check child config.packages.valgrind 0.208797 ============================================================================================= TESTING: consistencyChecks from config.packages.thrust(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.thrust(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.thrust 0.001523 ============================================================================================= TESTING: consistencyChecks from config.packages.cuda(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.cuda(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.cuda 0.000924 ============================================================================================= TESTING: consistencyChecks from config.packages.OpenMPI(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.OpenMPI(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.OpenMPI 0.001032 ============================================================================================= TESTING: consistencyChecks from config.packages.MPICH(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.MPICH(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.MPICH 0.001871 ============================================================================================= TESTING: consistencyChecks from config.packages.MPI(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.MPI(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:691) ================================================================================== Checking for a functional MPI Checking for library in Compiler specific search MPI: [] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library [] [] ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -ldl Checking for optional headers [] in Compiler specific search MPI: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in [] Found header files [] in [] Checking for headers ['mpi.h'] in Compiler specific search MPI: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['mpi.h'] in [] Checking include with compiler flags var CPPFLAGS [] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['mpi.h'] in [] Defined "HAVE_MPI_F90MODULE_VISIBILITY" to "1" ============================================================================================= TESTING: checkMPIDistro from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:544) Determine if MPICH_NUMVERSION, OMPI_MAJOR_VERSION or MSMPI_VER exist in mpi.h Used for consistency checking of MPI installation at compile time ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 2 stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.c", line 4: error: identifier "I_MPI_VERSION" is undefined const char *mpich_ver = I_MPI_VERSION; ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include const char *mpich_ver = I_MPI_VERSION; int main() { ; return 0; } ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 2 stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.c", line 4: error: identifier "I_MPI_NUMVERSION" is undefined int mpich_ver = I_MPI_NUMVERSION; ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = I_MPI_NUMVERSION; int main() { ; return 0; } ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 2 stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.c", line 4: error: identifier "MVAPICH2_NUMVERSION" is undefined int mpich_ver = MVAPICH2_NUMVERSION; ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MVAPICH2_NUMVERSION; int main() { ; return 0; } ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 2 stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.c", line 4: error: identifier "MPICH_NUMVERSION" is undefined int mpich_ver = MPICH_NUMVERSION; ^ 1 error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.c". Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MPICH_NUMVERSION; int main() { ; return 0; } ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int ompi_major = OMPI_MAJOR_VERSION; int ompi_minor = OMPI_MINOR_VERSION; int ompi_release = OMPI_RELEASE_VERSION; int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include int ompi_major = OMPI_MAJOR_VERSION; int ompi_minor = OMPI_MINOR_VERSION; int ompi_release = OMPI_RELEASE_VERSION; Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.c Defined "HAVE_OMPI_MAJOR_VERSION" to "4" Defined "HAVE_OMPI_MINOR_VERSION" to "0" Defined "HAVE_OMPI_RELEASE_VERSION" to "1" Executing: uname -s stdout: Linux ============================================================================================= TESTING: configureMPI2 from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:332) Check for functions added to the interface in MPI-2 ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int flag;if (MPI_Finalized(&flag)); ; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.o -ldl Defined "HAVE_MPI_FINALIZED" to "1" ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Allreduce(MPI_IN_PLACE,0, 1, MPI_INT, MPI_SUM, MPI_COMM_SELF)); ; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.o -ldl Defined "HAVE_MPI_IN_PLACE" to "1" ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int count=2; int blocklens[2]={0,1}; MPI_Aint indices[2]={0,1}; MPI_Datatype old_types[2]={MPI_INT,MPI_DOUBLE}; MPI_Datatype *newtype = 0; if (MPI_Type_create_struct(count, blocklens, indices, old_types, newtype)); ; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.o -ldl ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm_errhandler_fn * p_err_fun = 0; MPI_Errhandler * p_errhandler = 0; if (MPI_Comm_create_errhandler(p_err_fun,p_errhandler)); ; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.o -ldl ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_set_errhandler(MPI_COMM_WORLD,MPI_ERRORS_RETURN)); ; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.o -ldl ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Reduce_local(0, 0, 0, MPI_INT, MPI_SUM));; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.o -ldl Defined "HAVE_MPI_REDUCE_LOCAL" to "1" ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { char version[MPI_MAX_LIBRARY_VERSION_STRING];int verlen;if (MPI_Get_library_version(version,&verlen)); ; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.o -ldl Defined "HAVE_MPI_GET_LIBRARY_VERSION" to "1" ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int base[100]; MPI_Win win; if (MPI_Win_create(base,100,4,MPI_INFO_NULL,MPI_COMM_WORLD,&win)); ; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.o -ldl Defined "HAVE_MPI_WIN_CREATE" to "1" ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.c", line 6: warning: variable "win" is used before its value is set int ptr[1]; MPI_Win win; if (MPI_Accumulate(ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_REPLACE,win)); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ptr[1]; MPI_Win win; if (MPI_Accumulate(ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_REPLACE,win)); ; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.o -ldl Defined "HAVE_MPI_ONE_SIDED" to "1" ============================================================================================= TESTING: configureMPI3 from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:379) Check for functions added to the interface in MPI-3 ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm scomm; MPI_Aint size=128; int disp_unit=8,*baseptr; MPI_Win win; if (MPI_Comm_split_type(MPI_COMM_WORLD, MPI_COMM_TYPE_SHARED, 0, MPI_INFO_NULL, &scomm)); if (MPI_Win_allocate_shared(size,disp_unit,MPI_INFO_NULL,MPI_COMM_WORLD,&baseptr,&win)); if (MPI_Win_shared_query(win,0,&size,&disp_unit,&baseptr)); ; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.o -ldl Defined "HAVE_MPI_PROCESS_SHARED_MEMORY" to "1" ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int send=0,recv,counts[2]={1,1},displs[2]={1,2}; MPI_Request req; if (MPI_Iscatter(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Iscatterv(&send,counts,displs,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Igather(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Igatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Iallgather(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); if (MPI_Iallgatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,MPI_COMM_WORLD,&req)); if (MPI_Ialltoall(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); ; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.o -ldl Defined "HAVE_MPI_NONBLOCKING_COLLECTIVES" to "1" ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm distcomm; MPI_Request req; if (MPI_Dist_graph_create_adjacent(MPI_COMM_WORLD,0,0,MPI_WEIGHTS_EMPTY,0,0,MPI_WEIGHTS_EMPTY,MPI_INFO_NULL,0,&distcomm)); if (MPI_Neighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm)); if (MPI_Ineighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm,&req)); ; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.o -ldl Defined "HAVE_MPI_NEIGHBORHOOD_COLLECTIVES" to "1" ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 4 stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.c", line 7: catastrophic error: #error directive: This OpenMPI is not CUDA-aware #error This OpenMPI is not CUDA-aware ^ 1 catastrophic error detected in the compilation of "/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.c". Compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(MPIX_CUDA_AWARE_SUPPORT) && MPIX_CUDA_AWARE_SUPPORT #else #error This OpenMPI is not CUDA-aware #endif int main() { ; return 0; } ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.c", line 6: warning: variable "win" is used before its value is set int ptr[1]; MPI_Win win; if (MPI_Get_accumulate(ptr,1,MPI_INT,ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_SUM,win)); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ptr[1]; MPI_Win win; if (MPI_Get_accumulate(ptr,1,MPI_INT,ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_SUM,win)); ; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.o -ldl Defined "HAVE_MPI_GET_ACCUMULATE" to "1" ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.c", line 6: warning: variable "win" is used before its value is set int ptr[1]; MPI_Win win; MPI_Request req; if (MPI_Rget(ptr,1,MPI_INT,0,1,1,MPI_INT,win,&req)); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ptr[1]; MPI_Win win; MPI_Request req; if (MPI_Rget(ptr,1,MPI_INT,0,1,1,MPI_INT,win,&req)); ; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.o -ldl Defined "HAVE_MPI_RGET" to "1" ============================================================================================= TESTING: configureMPIEXEC from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:177) Checking for location of mpiexec Defined make macro "MPIEXEC" to "Not_appropriate_for_batch_systems_You_must_use_your_batch_system_to_submit_MPI_jobs_speak_with_your_local_sys_admin" ============================================================================================= TESTING: configureMPITypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:426) Checking for MPI Datatype handles ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_LONG_DOUBLE, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Defined "HAVE_MPI_LONG_DOUBLE" to "1" ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_INT64_T, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Defined "HAVE_MPI_INT64_T" to "1" ============================================================================================= TESTING: SGIMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:472) Returns true if SGI MPI is used Checking for functions [MPI_SGI_barrier] in library [] [] ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_SGI_barrier(); static void _check_MPI_SGI_barrier() { MPI_SGI_barrier(); } int main() { _check_MPI_SGI_barrier();; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -ldl Possible ERROR while running linker: exit code 1 stderr: /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o: In function `_check_MPI_SGI_barrier': /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.c:5: undefined reference to `MPI_SGI_barrier' SGI MPI test failure ============================================================================================= TESTING: CxxMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:482) Make sure C++ can compile and link Checking for header mpi.h Checking for C++ MPI_Finalize() Checking for functions [MPI_Finalize] in library [] [] ===== Checking linker Executing: mpiFCCpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -Kfast -fPIC /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.cc Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.cc", line 5: warning: variable "ierr" was set but never used static void _check_MPI_Finalize() { int ierr; ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_MPI_Finalize() { int ierr; ierr = MPI_Finalize();; } int main() { _check_MPI_Finalize();; return 0; } Executing: mpiFCCpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -ldl ============================================================================================= TESTING: FortranMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:498) Make sure fortran include [mpif.h] and library symbols are found ============================================================================================= TESTING: configureIO from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:520) Check for the functions in MPI/IO - Define HAVE_MPIIO if they are present - Some older MPI 1 implementations are missing these ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.c", line 12: warning: variable "fh" is used before its value is set if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); ^ "/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.c", line 12: warning: variable "buf" is used before its value is set if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); ^ "/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.c", line 18: warning: variable "disp" is used before its value is set if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); ^ "/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.c", line 18: warning: variable "info" is used before its value is set if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Aint lb, extent; if (MPI_Type_get_extent(MPI_INT, &lb, &extent)); MPI_File fh; void *buf; MPI_Status status; if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)); MPI_Offset disp; MPI_Info info; if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); if (MPI_File_open(MPI_COMM_SELF, "", 0, info, &fh)); if (MPI_File_close(&fh)); ; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.o -ldl Defined "HAVE_MPIIO" to "1" ============================================================================================= TESTING: findMPIInc from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:624) Find MPI include paths from "mpicc -show" and use with CUDAC_FLAGS ============================================================================================= TESTING: PetscArchMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:666) Checking for functions [MPI_Type_get_envelope MPI_Type_dup MPI_Init_thread MPI_Iallreduce MPI_Ibarrier MPI_Finalized MPI_Exscan MPI_Reduce_scatter MPI_Reduce_scatter_block] in library [] [] ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Type_get_envelope(); static void _check_MPI_Type_get_envelope() { MPI_Type_get_envelope(); } char MPI_Type_dup(); static void _check_MPI_Type_dup() { MPI_Type_dup(); } char MPI_Init_thread(); static void _check_MPI_Init_thread() { MPI_Init_thread(); } char MPI_Iallreduce(); static void _check_MPI_Iallreduce() { MPI_Iallreduce(); } char MPI_Ibarrier(); static void _check_MPI_Ibarrier() { MPI_Ibarrier(); } char MPI_Finalized(); static void _check_MPI_Finalized() { MPI_Finalized(); } char MPI_Exscan(); static void _check_MPI_Exscan() { MPI_Exscan(); } char MPI_Reduce_scatter(); static void _check_MPI_Reduce_scatter() { MPI_Reduce_scatter(); } char MPI_Reduce_scatter_block(); static void _check_MPI_Reduce_scatter_block() { MPI_Reduce_scatter_block(); } int main() { _check_MPI_Type_get_envelope(); _check_MPI_Type_dup(); _check_MPI_Init_thread(); _check_MPI_Iallreduce(); _check_MPI_Ibarrier(); _check_MPI_Finalized(); _check_MPI_Exscan(); _check_MPI_Reduce_scatter(); _check_MPI_Reduce_scatter_block();; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -ldl Defined "HAVE_MPI_TYPE_GET_ENVELOPE" to "1" Defined "HAVE_MPI_TYPE_DUP" to "1" Defined "HAVE_MPI_INIT_THREAD" to "1" Defined "HAVE_MPI_IALLREDUCE" to "1" Defined "HAVE_MPI_IBARRIER" to "1" Defined "HAVE_MPI_FINALIZED" to "1" Defined "HAVE_MPI_EXSCAN" to "1" Defined "HAVE_MPI_REDUCE_SCATTER" to "1" Defined "HAVE_MPI_REDUCE_SCATTER_BLOCK" to "1" Checking for functions [MPIX_Iallreduce] in library [] [] ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIX_Iallreduce(); static void _check_MPIX_Iallreduce() { MPIX_Iallreduce(); } int main() { _check_MPIX_Iallreduce();; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -ldl Possible ERROR while running linker: exit code 1 stderr: /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o: In function `_check_MPIX_Iallreduce': /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.c:5: undefined reference to `MPIX_Iallreduce' Checking for functions [MPIX_Ibarrier] in library [] [] ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIX_Ibarrier(); static void _check_MPIX_Ibarrier() { MPIX_Ibarrier(); } int main() { _check_MPIX_Ibarrier();; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -ldl Possible ERROR while running linker: exit code 1 stderr: /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o: In function `_check_MPIX_Ibarrier': /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.c:5: undefined reference to `MPIX_Ibarrier' ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.c", line 6: warning: variable "combiner" was declared but never referenced int combiner = MPI_COMBINER_DUP;; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_DUP;; return 0; } Defined "HAVE_MPI_COMBINER_DUP" to "1" ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.c", line 6: warning: variable "combiner" was declared but never referenced int combiner = MPI_COMBINER_CONTIGUOUS;; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_CONTIGUOUS;; return 0; } Defined "HAVE_MPI_COMBINER_CONTIGUOUS" to "1" ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.c", line 6: warning: variable "combiner" was declared but never referenced int combiner = MPI_COMBINER_NAMED;; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_NAMED;; return 0; } Defined "HAVE_MPI_COMBINER_NAMED" to "1" ============================================================================================= TESTING: checkVersion from config.packages.MPI(config/BuildSystem/config/package.py:1026) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "mpi.h" ;petscpkgver(MPI_VERSION); Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI /home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI/conftest.c For mpi need 2 <= 3 <= ============================================================================================= TESTING: checkSharedLibrary from config.packages.MPI(config/BuildSystem/config/package.py:955) By default we don't care about checking if the library is shared child config.packages.MPI 25.112841 ============================================================================================= TESTING: consistencyChecks from config.packages.zstd(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.zstd(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.zstd 0.001519 ============================================================================================= TESTING: consistencyChecks from config.packages.yaml(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.yaml(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.yaml 0.001037 ============================================================================================= TESTING: consistencyChecks from config.packages.sycl(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.sycl(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.sycl 0.000927 ============================================================================================= TESTING: consistencyChecks from config.packages.ssl(config/BuildSystem/config/packages/ssl.py:31) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ssl(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.ssl 0.001577 ============================================================================================= TESTING: consistencyChecks from config.packages.sprng(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.sprng(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.sprng 0.001023 Not a clone of PETSc or no Fortran compiler or fortran-bindings disabled, don't need Sowing child config.packages.sowing 0.000597 ============================================================================================= TESTING: consistencyChecks from config.packages.revolve(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.revolve(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.revolve 0.001046 ============================================================================================= TESTING: consistencyChecks from config.packages.radau5(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.radau5(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.radau5 0.001062 ============================================================================================= TESTING: consistencyChecks from config.packages.pami(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.pami(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.pami 0.000921 ============================================================================================= TESTING: consistencyChecks from config.packages.opengles(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.opengles(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.opengles 0.000923 ============================================================================================= TESTING: consistencyChecks from config.packages.opencl(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.opencl(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.opencl 0.000915 ============================================================================================= TESTING: consistencyChecks from config.packages.muparser(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.muparser(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.muparser 0.000996 ============================================================================================= TESTING: consistencyChecks from config.packages.mpe(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mpe(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.mpe 0.001064 ============================================================================================= TESTING: consistencyChecks from config.packages.memkind(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.memkind(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.memkind 0.000901 ============================================================================================= TESTING: consistencyChecks from config.packages.libmesh(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.libmesh(config/BuildSystem/config/packages/libmesh.py:76) Defined make rule "libmesh-build" with dependencies "" and code [] Defined make rule "libmesh-install" with dependencies "" and code [] child config.packages.libmesh 0.001706 ============================================================================================= TESTING: consistencyChecks from config.packages.moose(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.moose(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.moose 0.000985 ============================================================================================= TESTING: consistencyChecks from config.packages.libjpeg(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.libjpeg(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.libjpeg 0.001040 Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/lgrind...not found Checking for program /opt/local/openssh/bin/lgrind...not found Checking for program /usr/share/Modules/bin/lgrind...not found Checking for program /opt/local/openssh/bin/lgrind...not found Checking for program /usr/local/bin/lgrind...not found Checking for program /bin/lgrind...not found Checking for program /usr/bin/lgrind...not found Checking for program /usr/local/sbin/lgrind...not found Checking for program /usr/sbin/lgrind...not found Checking for program /home/ra010009/a04199/.local/bin/lgrind...not found Checking for program /home/ra010009/a04199/bin/lgrind...not found Checking for program /home/ra010009/a04199/petsc/lib/petsc/bin/win32fe/lgrind...not found child config.packages.lgrind 0.000787 ============================================================================================= TESTING: consistencyChecks from config.packages.hip(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.hip(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.hip 0.000964 child config.packages.gmsh 0.000153 ============================================================================================= TESTING: consistencyChecks from config.packages.gmp(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.gmp(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.gmp 0.001018 ============================================================================================= TESTING: consistencyChecks from config.packages.mpfr(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mpfr(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.mpfr 0.001013 ============================================================================================= TESTING: consistencyChecks from config.packages.giflib(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.giflib(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.giflib 0.000996 ============================================================================================= TESTING: consistencyChecks from config.packages.cub(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.cub(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.cub 0.001032 ============================================================================================= TESTING: consistencyChecks from config.packages.ctetgen(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ctetgen(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.ctetgen 0.001001 ============================================================================================= TESTING: consistencyChecks from config.packages.concurrencykit(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.concurrencykit(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.concurrencykit 0.001041 ============================================================================================= TESTING: locateC2html from config.packages.c2html(config/BuildSystem/config/packages/c2html.py:30) Looking for default C2html executable Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/c2html...not found Checking for program /opt/local/openssh/bin/c2html...not found Checking for program /usr/share/Modules/bin/c2html...not found Checking for program /opt/local/openssh/bin/c2html...not found Checking for program /usr/local/bin/c2html...not found Checking for program /bin/c2html...not found Checking for program /usr/bin/c2html...not found Checking for program /usr/local/sbin/c2html...not found Checking for program /usr/sbin/c2html...not found Checking for program /home/ra010009/a04199/.local/bin/c2html...not found Checking for program /home/ra010009/a04199/bin/c2html...not found Checking for program /home/ra010009/a04199/petsc/lib/petsc/bin/win32fe/c2html...not found child config.packages.c2html 0.002483 ============================================================================================= TESTING: consistencyChecks from config.packages.boost(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.boost(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.boost 0.001057 ============================================================================================= TESTING: consistencyChecks from config.packages.silo(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.silo(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.silo 0.001076 ============================================================================================= TESTING: consistencyChecks from config.packages.Random123(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Random123(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.Random123 0.001001 ============================================================================================= TESTING: consistencyChecks from config.packages.PARTY(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.PARTY(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.PARTY 0.000984 ============================================================================================= TESTING: consistencyChecks from config.packages.NVSHMEM(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.NVSHMEM(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.NVSHMEM 0.000937 ============================================================================================= TESTING: consistencyChecks from config.packages.Matlab(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Matlab(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.Matlab 0.000851 ============================================================================================= TESTING: consistencyChecks from config.packages.MatlabEngine(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.MatlabEngine(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.MatlabEngine 0.000917 ============================================================================================= TESTING: consistencyChecks from config.packages.Mathematica(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Mathematica(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.Mathematica 0.000911 ============================================================================================= TESTING: consistencyChecks from config.packages.regex(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.regex(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.regex(config/BuildSystem/config/package.py:897) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional regex Checking for library in Compiler specific search REGEX: [] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [regexec regcomp regfree] in library [] [] ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char regexec(); static void _check_regexec() { regexec(); } char regcomp(); static void _check_regcomp() { regcomp(); } char regfree(); static void _check_regfree() { regfree(); } int main() { _check_regexec(); _check_regcomp(); _check_regfree();; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -ldl Checking for optional headers [] in Compiler specific search REGEX: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in [] Found header files [] in [] Checking for headers ['regex.h'] in Compiler specific search REGEX: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['regex.h'] in [] Checking include with compiler flags var CPPFLAGS [] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['regex.h'] in [] ============================================================================================= TESTING: checkVersion from config.packages.regex(config/BuildSystem/config/package.py:1026) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.regex(config/BuildSystem/config/package.py:955) By default we don't care about checking if the library is shared child config.packages.regex 3.280019 ============================================================================================= TESTING: consistencyChecks from config.packages.libceed(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.libceed(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.libceed 0.001522 Defined "PYTHON_EXE" to ""/bin/python"" Executing: /bin/python -c "import Cython" Executing: /bin/python -c "import numpy" child config.packages.python 0.040863 ============================================================================================= TESTING: consistencyChecks from config.packages.petsc4py(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.petsc4py(config/BuildSystem/config/packages/petsc4py.py:125) Defined make rule "petsc4py-build" with dependencies "" and code [] Defined make rule "petsc4py-install" with dependencies "" and code [] Defined make rule "petsc4pytest" with dependencies "" and code [] child config.packages.petsc4py 0.002269 ============================================================================================= TESTING: consistencyChecks from config.packages.mpi4py(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mpi4py(config/BuildSystem/config/packages/mpi4py.py:79) Defined make rule "mpi4py-build" with dependencies "" and code [] Defined make rule "mpi4py-install" with dependencies "" and code [] child config.packages.mpi4py 0.002175 ============================================================================================= TESTING: consistencyChecks from config.packages.slepc(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.slepc(config/BuildSystem/config/packages/slepc.py:97) Defined make rule "slepc-build" with dependencies "" and code [] Defined make rule "slepc-install" with dependencies "" and code [] child config.packages.slepc 0.001839 ============================================================================================= TESTING: consistencyChecks from config.packages.opengl(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.opengl(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.opengl 0.000939 ============================================================================================= TESTING: consistencyChecks from config.packages.glut(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.glut(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.glut 0.000905 ============================================================================================= TESTING: consistencyChecks from config.packages.GLVis(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.GLVis(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.GLVis 0.001035 ============================================================================================= TESTING: consistencyChecks from config.packages.CoDiPack(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.CoDiPack(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.CoDiPack 0.001018 ============================================================================================= TESTING: consistencyChecks from config.packages.adblaslapack(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.adblaslapack(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.adblaslapack 0.001012 child config.packages.cxxlibs 0.000031 ============================================================================================= TESTING: locateCMake from config.packages.cmake(config/BuildSystem/config/packages/cmake.py:48) Looking for default CMake executable Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/cmake...not found Checking for program /opt/local/openssh/bin/cmake...not found Checking for program /usr/share/Modules/bin/cmake...not found Checking for program /opt/local/openssh/bin/cmake...not found Checking for program /usr/local/bin/cmake...not found Checking for program /bin/cmake...found Defined make macro "CMAKE" to "/bin/cmake" Looking for default CTest executable Checking for program /opt/FJSVxtclanga/tcsds-1.2.31/bin/ctest...not found Checking for program /opt/local/openssh/bin/ctest...not found Checking for program /usr/share/Modules/bin/ctest...not found Checking for program /opt/local/openssh/bin/ctest...not found Checking for program /usr/local/bin/ctest...not found Checking for program /bin/ctest...found Defined make macro "CTEST" to "/bin/ctest" Executing: /bin/cmake --version stdout: cmake version 3.11.4 CMake suite maintained and supported by Kitware (kitware.com/cmake). cmake version found 3.11.4 child config.packages.cmake 0.030091 ============================================================================================= TESTING: consistencyChecks from config.packages.unittestcpp(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.unittestcpp(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.unittestcpp 0.001445 ============================================================================================= TESTING: consistencyChecks from config.packages.googletest(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.googletest(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.googletest 0.001052 ============================================================================================= TESTING: consistencyChecks from config.packages.eigen(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.eigen(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.eigen 0.001027 ============================================================================================= TESTING: consistencyChecks from config.packages.szlib(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.szlib(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.szlib 0.001030 ============================================================================================= TESTING: consistencyChecks from config.packages.zlib(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.zlib(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.zlib(config/BuildSystem/config/package.py:897) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional zlib Looking for ZLIB at git.zlib, hg.zlib or a directory starting with ['zlib'] Could not locate an existing copy of ZLIB: [] Downloading zlib ============================================================================================= Trying to download http://www.zlib.net/zlib-1.2.11.tar.gz for ZLIB ============================================================================================= install: Retrieving http://www.zlib.net/zlib-1.2.11.tar.gz as tarball to /vol0004/ra010009/a04199/petsc/arch-fugaku-fujitsu/externalpackages/_d_zlib-1.2.11.tar.gz Extracting /vol0004/ra010009/a04199/petsc/arch-fugaku-fujitsu/externalpackages/_d_zlib-1.2.11.tar.gz Executing: cd /vol0004/ra010009/a04199/petsc/arch-fugaku-fujitsu/externalpackages; chmod -R a+r zlib-1.2.11;find zlib-1.2.11 -type d -name "*" -exec chmod a+rx {} \; Looking for ZLIB at git.zlib, hg.zlib or a directory starting with ['zlib'] Found a copy of ZLIB in zlib-1.2.11 ZLIB was just downloaded, forcing a rebuild because cannot determine if package has changed zlibDir = /vol0004/ra010009/a04199/petsc/arch-fugaku-fujitsu/externalpackages/zlib-1.2.11 installDir /home/ra010009/a04199/petsc-hash-pkgs/40131e ============================================================================================= Building and installing zlib; this may take several minutes ============================================================================================= Executing: cd /vol0004/ra010009/a04199/petsc/arch-fugaku-fujitsu/externalpackages/zlib-1.2.11 && CC="mpifccpx" CFLAGS="-L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast" prefix="/home/ra010009/a04199/petsc-hash-pkgs/40131e" ./configure && /bin/gmake -j8 -l96.0 && /bin/gmake install stdout: Checking for shared library support... Building shared library libz.so.1.2.11 with mpifccpx. Checking for size_t... Yes. Checking for off64_t... Yes. Checking for fseeko... Yes. Checking for strerror... Yes. Checking for unistd.h... Yes. Checking for stdarg.h... Yes. Checking whether to use vs[n]printf() or s[n]printf()... using vs[n]printf(). Checking for vsnprintf() in stdio.h... Yes. Checking for return value of vsnprintf()... Yes. Checking for attribute(visibility) support... Yes. mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -I. -c -o example.o test/example.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o adler32.o adler32.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o crc32.o crc32.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o deflate.o deflate.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o infback.o infback.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o inffast.o inffast.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o inflate.o inflate.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o inftrees.o inftrees.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o trees.o trees.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o zutil.o zutil.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o compress.o compress.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o uncompr.o uncompr.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o gzclose.o gzclose.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o gzlib.o gzlib.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o gzread.o gzread.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o gzwrite.o gzwrite.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -I. -c -o minigzip.o test/minigzip.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DPIC -c -o objs/adler32.o adler32.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DPIC -c -o objs/crc32.o crc32.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DPIC -c -o objs/deflate.o deflate.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DPIC -c -o objs/infback.o infback.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DPIC -c -o objs/inffast.o inffast.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DPIC -c -o objs/inflate.o inflate.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DPIC -c -o objs/inftrees.o inftrees.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DPIC -c -o objs/trees.o trees.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DPIC -c -o objs/zutil.o zutil.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DPIC -c -o objs/compress.o compress.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DPIC -c -o objs/uncompr.o uncompr.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DPIC -c -o objs/gzclose.o gzclose.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DPIC -c -o objs/gzlib.o gzlib.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DPIC -c -o objs/gzread.o gzread.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DPIC -c -o objs/gzwrite.o gzwrite.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -I. -D_FILE_OFFSET_BITS=64 -c -o example64.o test/example.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -I. -D_FILE_OFFSET_BITS=64 -c -o minigzip64.o test/minigzip.c ar rc libz.a adler32.o crc32.o deflate.o infback.o inffast.o inflate.o inftrees.o trees.o zutil.o compress.o uncompr.o gzclose.o gzlib.o gzread.o gzwrite.o mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -o example example.o -L. libz.a mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -o minigzip minigzip.o -L. libz.a mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -o minigzip64 minigzip64.o -L. libz.a mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -o example64 example64.o -L. libz.a mpifccpx -shared -Wl,-soname,libz.so.1,--version-script,zlib.map -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -o libz.so.1.2.11 adler32.lo crc32.lo deflate.lo infback.lo inffast.lo inflate.lo inftrees.lo trees.lo zutil.lo compress.lo uncompr.lo gzclose.lo gzlib.lo gzread.lo gzwrite.lo -lc rm -f libz.so libz.so.1 ln -s libz.so.1.2.11 libz.so ln -s libz.so.1.2.11 libz.so.1 mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -o examplesh example.o -L. libz.so.1.2.11 mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -o minigzipsh minigzip.o -L. libz.so.1.2.11 rm -f /home/ra010009/a04199/petsc-hash-pkgs/40131e/lib/libz.a cp libz.a /home/ra010009/a04199/petsc-hash-pkgs/40131e/lib chmod 644 /home/ra010009/a04199/petsc-hash-pkgs/40131e/lib/libz.a cp libz.so.1.2.11 /home/ra010009/a04199/petsc-hash-pkgs/40131e/lib chmod 755 /home/ra010009/a04199/petsc-hash-pkgs/40131e/lib/libz.so.1.2.11 rm -f /home/ra010009/a04199/petsc-hash-pkgs/40131e/share/man/man3/zlib.3 cp zlib.3 /home/ra010009/a04199/petsc-hash-pkgs/40131e/share/man/man3 chmod 644 /home/ra010009/a04199/petsc-hash-pkgs/40131e/share/man/man3/zlib.3 rm -f /home/ra010009/a04199/petsc-hash-pkgs/40131e/lib/pkgconfig/zlib.pc cp zlib.pc /home/ra010009/a04199/petsc-hash-pkgs/40131e/lib/pkgconfig chmod 644 /home/ra010009/a04199/petsc-hash-pkgs/40131e/lib/pkgconfig/zlib.pc rm -f /home/ra010009/a04199/petsc-hash-pkgs/40131e/include/zlib.h /home/ra010009/a04199/petsc-hash-pkgs/40131e/include/zconf.h cp zlib.h zconf.h /home/ra010009/a04199/petsc-hash-pkgs/40131e/include chmod 644 /home/ra010009/a04199/petsc-hash-pkgs/40131e/include/zlib.h /home/ra010009/a04199/petsc-hash-pkgs/40131e/include/zconf.h ********Output of running make on ZLIB follows ******* Checking for shared library support... Building shared library libz.so.1.2.11 with mpifccpx. Checking for size_t... Yes. Checking for off64_t... Yes. Checking for fseeko... Yes. Checking for strerror... Yes. Checking for unistd.h... Yes. Checking for stdarg.h... Yes. Checking whether to use vs[n]printf() or s[n]printf()... using vs[n]printf(). Checking for vsnprintf() in stdio.h... Yes. Checking for return value of vsnprintf()... Yes. Checking for attribute(visibility) support... Yes. mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -I. -c -o example.o test/example.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o adler32.o adler32.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o crc32.o crc32.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o deflate.o deflate.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o infback.o infback.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o inffast.o inffast.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o inflate.o inflate.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o inftrees.o inftrees.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o trees.o trees.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o zutil.o zutil.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o compress.o compress.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o uncompr.o uncompr.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o gzclose.o gzclose.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o gzlib.o gzlib.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o gzread.o gzread.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o gzwrite.o gzwrite.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -I. -c -o minigzip.o test/minigzip.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DPIC -c -o objs/adler32.o adler32.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DPIC -c -o objs/crc32.o crc32.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DPIC -c -o objs/deflate.o deflate.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DPIC -c -o objs/infback.o infback.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DPIC -c -o objs/inffast.o inffast.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DPIC -c -o objs/inflate.o inflate.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DPIC -c -o objs/inftrees.o inftrees.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DPIC -c -o objs/trees.o trees.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DPIC -c -o objs/zutil.o zutil.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DPIC -c -o objs/compress.o compress.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DPIC -c -o objs/uncompr.o uncompr.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DPIC -c -o objs/gzclose.o gzclose.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DPIC -c -o objs/gzlib.o gzlib.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DPIC -c -o objs/gzread.o gzread.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DPIC -c -o objs/gzwrite.o gzwrite.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -I. -D_FILE_OFFSET_BITS=64 -c -o example64.o test/example.c mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -I. -D_FILE_OFFSET_BITS=64 -c -o minigzip64.o test/minigzip.c ar rc libz.a adler32.o crc32.o deflate.o infback.o inffast.o inflate.o inftrees.o trees.o zutil.o compress.o uncompr.o gzclose.o gzlib.o gzread.o gzwrite.o mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -o example example.o -L. libz.a mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -o minigzip minigzip.o -L. libz.a mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -o minigzip64 minigzip64.o -L. libz.a mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -o example64 example64.o -L. libz.a mpifccpx -shared -Wl,-soname,libz.so.1,--version-script,zlib.map -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -o libz.so.1.2.11 adler32.lo crc32.lo deflate.lo infback.lo inffast.lo inflate.lo inftrees.lo trees.lo zutil.lo compress.lo uncompr.lo gzclose.lo gzlib.lo gzread.lo gzwrite.lo -lc rm -f libz.so libz.so.1 ln -s libz.so.1.2.11 libz.so ln -s libz.so.1.2.11 libz.so.1 mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -o examplesh example.o -L. libz.so.1.2.11 mpifccpx -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -o minigzipsh minigzip.o -L. libz.so.1.2.11 rm -f /home/ra010009/a04199/petsc-hash-pkgs/40131e/lib/libz.a cp libz.a /home/ra010009/a04199/petsc-hash-pkgs/40131e/lib chmod 644 /home/ra010009/a04199/petsc-hash-pkgs/40131e/lib/libz.a cp libz.so.1.2.11 /home/ra010009/a04199/petsc-hash-pkgs/40131e/lib chmod 755 /home/ra010009/a04199/petsc-hash-pkgs/40131e/lib/libz.so.1.2.11 rm -f /home/ra010009/a04199/petsc-hash-pkgs/40131e/share/man/man3/zlib.3 cp zlib.3 /home/ra010009/a04199/petsc-hash-pkgs/40131e/share/man/man3 chmod 644 /home/ra010009/a04199/petsc-hash-pkgs/40131e/share/man/man3/zlib.3 rm -f /home/ra010009/a04199/petsc-hash-pkgs/40131e/lib/pkgconfig/zlib.pc cp zlib.pc /home/ra010009/a04199/petsc-hash-pkgs/40131e/lib/pkgconfig chmod 644 /home/ra010009/a04199/petsc-hash-pkgs/40131e/lib/pkgconfig/zlib.pc rm -f /home/ra010009/a04199/petsc-hash-pkgs/40131e/include/zlib.h /home/ra010009/a04199/petsc-hash-pkgs/40131e/include/zconf.h cp zlib.h zconf.h /home/ra010009/a04199/petsc-hash-pkgs/40131e/include chmod 644 /home/ra010009/a04199/petsc-hash-pkgs/40131e/include/zlib.h /home/ra010009/a04199/petsc-hash-pkgs/40131e/include/zconf.h"crc32.c", line 225: warning: statement is unreachable crc = crc ^ 0xffffffffUL; ^ "gzread.c", line 317: warning: integer conversion resulted in a change of sign n = -1; ^ "crc32.c", line 225: warning: statement is unreachable crc = crc ^ 0xffffffffUL; ^ "gzread.c", line 317: warning: integer conversion resulted in a change of sign n = -1; ^ ********End of Output of running make on ZLIB ******* Checking for library in Download ZLIB: ['/home/ra010009/a04199/petsc-hash-pkgs/40131e/lib/libz.a'] Contents: ['lib', 'share', 'include'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [compress uncompress] in library ['/home/ra010009/a04199/petsc-hash-pkgs/40131e/lib/libz.a'] [] ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char compress(); static void _check_compress() { compress(); } char uncompress(); static void _check_uncompress() { uncompress(); } int main() { _check_compress(); _check_uncompress();; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -Wl,-rpath,/home/ra010009/a04199/petsc-hash-pkgs/40131e/lib -L/home/ra010009/a04199/petsc-hash-pkgs/40131e/lib -lz -ldl Defined "HAVE_LIBZ" to "1" Checking for optional headers [] in Download ZLIB: ['/home/ra010009/a04199/petsc-hash-pkgs/40131e/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/home/ra010009/a04199/petsc-hash-pkgs/40131e/include'] Found header files [] in ['/home/ra010009/a04199/petsc-hash-pkgs/40131e/include'] Checking for headers ['zlib.h'] in Download ZLIB: ['/home/ra010009/a04199/petsc-hash-pkgs/40131e/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['zlib.h'] in ['/home/ra010009/a04199/petsc-hash-pkgs/40131e/include'] Checking include with compiler flags var CPPFLAGS ['/home/ra010009/a04199/petsc-hash-pkgs/40131e/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI -I/home/ra010009/a04199/petsc-hash-pkgs/40131e/include /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['zlib.h'] in ['/home/ra010009/a04199/petsc-hash-pkgs/40131e/include'] ============================================================================================= TESTING: checkVersion from config.packages.zlib(config/BuildSystem/config/package.py:1026) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "zlib.h" ;petscpkgver(ZLIB_VERSION); Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.zlib -I/home/ra010009/a04199/petsc-hash-pkgs/40131e/include /home/ra010009/a04199/petsc-3a1s51fh/config.packages.zlib/conftest.c For zlib need <= 1.2.11 <= ============================================================================================= TESTING: checkSharedLibrary from config.packages.zlib(config/BuildSystem/config/package.py:955) By default we don't care about checking if the library is shared child config.packages.zlib 11.611792 child config.packages.mathlib 0.000040 ============================================================================================= TESTING: consistencyChecks from config.packages.tetgen(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.tetgen(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.tetgen 0.001504 ============================================================================================= TESTING: consistencyChecks from config.packages.tchem(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.tchem(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.tchem 0.001028 ============================================================================================= TESTING: consistencyChecks from config.packages.saws(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.saws(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.saws 0.001070 ============================================================================================= TESTING: consistencyChecks from config.packages.libpng(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.libpng(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.libpng 0.001041 ============================================================================================= TESTING: consistencyChecks from config.packages.combblas(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.combblas(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.combblas 0.001043 ============================================================================================= TESTING: consistencyChecks from config.packages.Triangle(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Triangle(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.Triangle 0.001023 ============================================================================================= TESTING: consistencyChecks from config.packages.metis(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.metis(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.metis 0.001019 ============================================================================================= TESTING: consistencyChecks from config.packages.pragmatic(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.pragmatic(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.pragmatic 0.001026 ============================================================================================= TESTING: consistencyChecks from config.packages.parmetis(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.parmetis(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.parmetis 0.000989 ============================================================================================= TESTING: consistencyChecks from config.packages.Chaco(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Chaco(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.Chaco 0.001043 Executing: uname -s stdout: Linux ============================================================================================= TESTING: consistencyChecks from config.packages.hdf5(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.hdf5(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.hdf5 0.005763 ============================================================================================= TESTING: consistencyChecks from config.packages.med(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.med(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.med 0.001022 ============================================================================================= TESTING: consistencyChecks from config.packages.cgns(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.cgns(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.cgns 0.000953 ============================================================================================= TESTING: consistencyChecks from config.packages.ascem-io(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ascem-io(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.ascem-io 0.001000 ============================================================================================= TESTING: consistencyChecks from config.packages.pflotran(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.pflotran(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.pflotran 0.000994 ============================================================================================= TESTING: consistencyChecks from config.packages.alquimia(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.alquimia(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.alquimia 0.001030 ============================================================================================= TESTING: consistencyChecks from config.packages.SAMRAI(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.SAMRAI(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.SAMRAI 0.001033 child config.packages.flibs 0.000036 ============================================================================================= TESTING: consistencyChecks from config.packages.pnetcdf(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.pnetcdf(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.pnetcdf 0.001045 ============================================================================================= TESTING: consistencyChecks from config.packages.netcdf(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.netcdf(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.netcdf 0.000994 ============================================================================================= TESTING: consistencyChecks from config.packages.exodusii(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.exodusii(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.exodusii 0.001009 ============================================================================================= TESTING: consistencyChecks from config.packages.fblaslapack(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.fblaslapack(config/BuildSystem/config/packages/fblaslapack.py:27) The Apple Accelerate library uses threads that valgrind cannot handle Executing: uname -s stdout: Linux child config.packages.fblaslapack 0.004703 ============================================================================================= TESTING: consistencyChecks from config.packages.pthread(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.pthread(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.pthread(config/BuildSystem/config/packages/pthread.py:20) Checks for pthread_barrier_t, cpu_set_t, and sys/sysctl.h ================================================================================== Checking for a functional pthread Checking for library in Compiler specific search PTHREAD: [] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [pthread_create] in library [] [] ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char pthread_create(); static void _check_pthread_create() { pthread_create(); } int main() { _check_pthread_create();; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -ldl Checking for optional headers [] in Compiler specific search PTHREAD: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in [] Found header files [] in [] Checking for headers ['pthread.h'] in Compiler specific search PTHREAD: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['pthread.h'] in [] Checking include with compiler flags var CPPFLAGS [] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.zlib -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['pthread.h'] in [] ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.packages.pthread/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.pthread -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.packages.pthread/conftest.c Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.packages.pthread/conftest.c", line 6: warning: variable "a" was declared but never referenced pthread_barrier_t *a; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { pthread_barrier_t *a; ; return 0; } Defined "HAVE_PTHREAD_BARRIER_T" to "1" ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.packages.pthread/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.pthread -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.packages.pthread/conftest.c Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.packages.pthread/conftest.c", line 6: warning: variable "a" was declared but never referenced cpu_set_t *a; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { cpu_set_t *a; ; return 0; } Defined "HAVE_SCHED_CPU_SET_T" to "1" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.zlib -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.pthread /home/ra010009/a04199/petsc-3a1s51fh/config.packages.pthread/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_SYSCTL_H" to "1" ============================================================================================= TESTING: checkVersion from config.packages.pthread(config/BuildSystem/config/package.py:1026) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.pthread(config/BuildSystem/config/package.py:955) By default we don't care about checking if the library is shared child config.packages.pthread 2.775267 ============================================================================================= TESTING: consistencyChecks from config.packages.egads(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.egads(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.egads 0.001449 ============================================================================================= TESTING: consistencyChecks from config.packages.PTScotch(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.PTScotch(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.PTScotch 0.001050 ============================================================================================= TESTING: consistencyChecks from config.packages.mmg(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mmg(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.mmg 0.001014 ============================================================================================= TESTING: consistencyChecks from config.packages.parmmg(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.parmmg(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.parmmg 0.001038 ============================================================================================= TESTING: consistencyChecks from config.packages.Zoltan(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Zoltan(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.Zoltan 0.001000 ============================================================================================= TESTING: consistencyChecks from config.packages.ADIOS(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ADIOS(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.ADIOS 0.001008 ============================================================================================= TESTING: consistencyChecks from config.packages.openmp(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.openmp(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.openmp 0.000922 ============================================================================================= TESTING: consistencyChecks from config.packages.viennacl(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.viennacl(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.viennacl 0.001001 ============================================================================================= TESTING: consistencyChecks from config.packages.ColPack(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ColPack(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.ColPack 0.001009 ============================================================================================= TESTING: consistencyChecks from config.packages.ADOLC(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ADOLC(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.ADOLC 0.001008 ============================================================================================= TESTING: consistencyChecks from config.packages.openblas(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.openblas(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.openblas 0.000988 ============================================================================================= TESTING: consistencyChecks from config.packages.blis(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.blis(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.blis 0.001002 ============================================================================================= TESTING: consistencyChecks from config.packages.f2cblaslapack(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.f2cblaslapack(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.f2cblaslapack 0.000966 ============================================================================================= TESTING: consistencyChecks from config.packages.BlasLapack(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.BlasLapack(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:454) ================================================================================ Checking for BLAS and LAPACK in Default compiler libraries ============================================================================================= TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:109) Checking for BLAS and LAPACK symbols Checking for Fortran name mangling unchanged on BLAS/LAPACK Checking for functions [ddot] in library [''] [] ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.pthread -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot(); static void _check_ddot() { ddot(); } int main() { _check_ddot();; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -ldl Possible ERROR while running linker: exit code 1 stderr: /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o: In function `_check_ddot': /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.c:5: undefined reference to `ddot' Checking for underscore name mangling on BLAS/LAPACK Checking for functions [ddot_] in library [''] [] ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.pthread -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -ldl Checking for functions [dgetrs_] in library [''] [''] ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.pthread -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgetrs_(); static void _check_dgetrs_() { dgetrs_(); } int main() { _check_dgetrs_();; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -ldl Checking for functions [dgeev_] in library [''] [''] ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.pthread -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgeev_(); static void _check_dgeev_() { dgeev_(); } int main() { _check_dgeev_();; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -ldl Found underscore name mangling on BLAS/LAPACK Defined "BLASLAPACK_UNDERSCORE" to "1" ============================================================================================= TESTING: checkMKL from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:551) Check for Intel MKL library Checking for functions [mkl_set_num_threads] in library [] [] ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.pthread -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char mkl_set_num_threads(); static void _check_mkl_set_num_threads() { mkl_set_num_threads(); } int main() { _check_mkl_set_num_threads();; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -ldl Possible ERROR while running linker: exit code 1 stderr: /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o: In function `_check_mkl_set_num_threads': /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.c:5: undefined reference to `mkl_set_num_threads' ============================================================================================= TESTING: checkESSL from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:589) Check for the IBM ESSL library Checking for functions [iessl] in library [] [] ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.pthread -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char iessl(); static void _check_iessl() { iessl(); } int main() { _check_iessl();; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -ldl Possible ERROR while running linker: exit code 1 stderr: /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o: In function `_check_iessl': /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.c:5: undefined reference to `iessl' ============================================================================================= TESTING: checkPESSL from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:597) Check for the IBM PESSL library - and error out - if used instead of ESSL Checking for functions [ipessl] in library [] [] ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.pthread -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ipessl(); static void _check_ipessl() { ipessl(); } int main() { _check_ipessl();; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -ldl Possible ERROR while running linker: exit code 1 stderr: /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o: In function `_check_ipessl': /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.c:5: undefined reference to `ipessl' ============================================================================================= TESTING: checkMissing from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:622) Check for missing LAPACK routines Checking for functions [dgelss_ dgerfs_ dgges_ dhgeqz_ dhseqr_ dorgqr_ dormqr_ dstebz_ dstegr_ dstein_ dsteqr_ dsytri_ dtgsen_ dtrsen_ dtrtrs_] in library [''] [''] ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.pthread -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgelss_(); static void _check_dgelss_() { dgelss_(); } char dgerfs_(); static void _check_dgerfs_() { dgerfs_(); } char dgges_(); static void _check_dgges_() { dgges_(); } char dhgeqz_(); static void _check_dhgeqz_() { dhgeqz_(); } char dhseqr_(); static void _check_dhseqr_() { dhseqr_(); } char dorgqr_(); static void _check_dorgqr_() { dorgqr_(); } char dormqr_(); static void _check_dormqr_() { dormqr_(); } char dstebz_(); static void _check_dstebz_() { dstebz_(); } char dstegr_(); static void _check_dstegr_() { dstegr_(); } char dstein_(); static void _check_dstein_() { dstein_(); } char dsteqr_(); static void _check_dsteqr_() { dsteqr_(); } char dsytri_(); static void _check_dsytri_() { dsytri_(); } char dtgsen_(); static void _check_dtgsen_() { dtgsen_(); } char dtrsen_(); static void _check_dtrsen_() { dtrsen_(); } char dtrtrs_(); static void _check_dtrtrs_() { dtrtrs_(); } int main() { _check_dgelss_(); _check_dgerfs_(); _check_dgges_(); _check_dhgeqz_(); _check_dhseqr_(); _check_dorgqr_(); _check_dormqr_(); _check_dstebz_(); _check_dstegr_(); _check_dstein_(); _check_dsteqr_(); _check_dsytri_(); _check_dtgsen_(); _check_dtrsen_(); _check_dtrtrs_();; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -ldl ============================================================================================= TESTING: checklsame from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:638) Do the BLAS/LAPACK libraries have a valid lsame() function with correct binding. Checking for functions [lsame_] in library [] [] ===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.pthread -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char lsame_(); static void _check_lsame_() { lsame_(); } int main() { _check_lsame_();; return 0; } Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.libraries/conftest.o -ldl ===== Checking compiler Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.pthread -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.c", line 5: warning: last line of file ends without a newline } ^ Source: #include "confdefs.h" #include "conffix.h" char *dgeev_(void); char* testroutine(void){return dgeev_(); }===== Checking linker Executing: mpifccpx -c -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilerFlags -I/home/ra010009/a04199/petsc-3a1s51fh/config.compilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.closure -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.cacheDetails -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.functions -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.featureTestMacros -I/home/ra010009/a04199/petsc-3a1s51fh/config.utilities.missing -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.sharedLibraries -I/home/ra010009/a04199/petsc-3a1s51fh/PETSc.options.scalarTypes -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.libraries -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.pthread -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: "/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.c", line 5: warning: last line of file ends without a newline } ^ Source: #include "confdefs.h" #include "conffix.h" char *dgeev_(void); char* testroutine(void){return dgeev_(); }Executing: mpifccpx -o /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/libconftest.so -shared -L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast /home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers/conftest.o -ldl ============================================================================================= TESTING: checkRuntimeIssues from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:697) Determines if BLAS/LAPACK routines use 32 or 64 bit integers ============================================================================================= ***** WARNING: Cannot determine if BLAS/LAPACK uses 32 bit or 64 bit integers in batch-mode! Assuming 32 bit integers. Run with --known-64-bit-blas-indices if you know they are 64 bit. Run with --known-64-bit-blas-indices=0 to remove this warning message ***** ============================================================================================= In batch mode with unknown size of BLAS/LAPACK defaulting to 32 bit ============================================================================================= TESTING: checkCHeaders from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:529) Check for cblas.h and lapacke.h ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['cblas.h', 'lapacke.h'] in [] Checking include with compiler flags var CPPFLAGS [] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.zlib -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.pthread -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Checking include with compiler flags var CPPFLAGS [] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpifccpx -E -I/home/ra010009/a04199/petsc-3a1s51fh/config.setCompilers -I/home/ra010009/a04199/petsc-3a1s51fh/config.types -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.valgrind -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.MPI -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.zlib -I/home/ra010009/a04199/petsc-3a1s51fh/config.packages.pthread -I/home/ra010009/a04199/petsc-3a1s51fh/config.headers /home/ra010009/a04199/petsc-3a1s51fh/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['cblas.h', 'lapacke.h'] in [] ============================================================================================= TESTING: checkVersion from config.packages.BlasLapack(config/BuildSystem/config/package.py:1026) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.BlasLapack(config/BuildSystem/config/package.py:955) By default we don't care about checking if the library is shared child config.packages.BlasLapack 20.938656 ============================================================================================= TESTING: consistencyChecks from config.packages.sundials2(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.sundials2(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.sundials2 0.001572 ============================================================================================= TESTING: consistencyChecks from config.packages.spai(config/BuildSystem/config/packages/spai.py:53) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.spai(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.spai 0.001702 ============================================================================================= TESTING: consistencyChecks from config.packages.pARMS(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.pARMS(config/BuildSystem/config/package.py:959) Called if --with-packagename=0; does nothing by default child config.packages.pARMS 0.001113 ============================================================================================= TESTING: consistencyChecks from config.packages.p4est(config/BuildSystem/config/package.py:963) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.p4est(config/BuildSystem/config/package.py:872) ============================================================================================= TESTING: configureLibrary from config.packages.p4est(config/BuildSystem/config/package.py:897) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional p4est Looking for P4EST at git.p4est, hg.p4est or a directory starting with ['p4est'] Could not locate an existing copy of P4EST: ['zlib-1.2.11'] Downloading p4est ============================================================================================= Trying to download git://https://github.com/tisaac/p4est for P4EST ============================================================================================= install: Retrieving git://https://github.com/tisaac/p4est as git repo Executing: git clone https://github.com/tisaac/p4est /vol0004/ra010009/a04199/petsc/arch-fugaku-fujitsu/externalpackages/git.p4est Looking for P4EST at git.p4est, hg.p4est or a directory starting with ['p4est'] Found a copy of P4EST in git.p4est Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Executing: ['git', 'cat-file', '-e', '1727693b446ee0c987be701320db0cd5de617cfc^{commit}'] Executing: ['git', 'rev-parse', '1727693b446ee0c987be701320db0cd5de617cfc'] stdout: 1727693b446ee0c987be701320db0cd5de617cfc Executing: ['git', '-c', 'user.name=petsc-configure', '-c', 'user.email=petsc@configure', 'stash'] stdout: No local changes to save Executing: ['git', 'clean', '-f', '-d', '-x'] Executing: ['git', 'checkout', '-f', '1727693b446ee0c987be701320db0cd5de617cfc'] Looking for P4EST at git.p4est, hg.p4est or a directory starting with ['p4est'] Found a copy of P4EST in git.p4est Executing: ['git', 'submodule', 'update', '--init'] stdout: Submodule path 'sc': checked out 'f2c88cf80ca9dfc5038f0ac26a01d5015305dca2' P4EST was just downloaded, forcing a rebuild because cannot determine if package has changed ============================================================================================= Trying to bootstrap p4est using autotools; this may take several minutes ============================================================================================= Executing: ./bootstrap stdout: Running bootstrap in subdirectory sc --- This is the bootstrap script for libsc --- It is NOT required to run bootstrap to build from a tar.gz archive Development requires a libtool recent enough to contain LT_INIT (2.2 works) Current directory is /vol0004/ra010009/a04199/petsc/arch-fugaku-fujitsu/externalpackages/git.p4est/sc libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'build-aux'. libtoolize: copying file 'build-aux/config.guess' libtoolize: copying file 'build-aux/config.sub' libtoolize: copying file 'build-aux/install-sh' libtoolize: copying file 'build-aux/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'config'. libtoolize: copying file 'config/libtool.m4' libtoolize: copying file 'config/ltoptions.m4' libtoolize: copying file 'config/ltsugar.m4' libtoolize: copying file 'config/ltversion.m4' libtoolize: copying file 'config/lt~obsolete.m4' --- This is the bootstrap script for p4est --- Current directory is /vol0004/ra010009/a04199/petsc/arch-fugaku-fujitsu/externalpackages/git.p4est libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'build-aux'. libtoolize: copying file 'build-aux/config.guess' libtoolize: copying file 'build-aux/config.sub' libtoolize: copying file 'build-aux/install-sh' libtoolize: copying file 'build-aux/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'config'. libtoolize: copying file 'config/libtool.m4' libtoolize: copying file 'config/ltoptions.m4' libtoolize: copying file 'config/ltsugar.m4' libtoolize: copying file 'config/ltversion.m4' libtoolize: copying file 'config/lt~obsolete.m4' ============================================================================================= Running configure on P4EST; this may take several minutes ============================================================================================= Executing: ./configure --prefix=/home/ra010009/a04199/petsc-hash-pkgs/40131e MAKE=/bin/gmake --libdir=/home/ra010009/a04199/petsc-hash-pkgs/40131e/lib CC="mpifccpx" CFLAGS="-L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast" AR="/bin/ar" ARFLAGS="cr" CXX="mpiFCCpx" CXXFLAGS="-L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -Kfast -fPIC" --disable-fortran --disable-fc --disable-f77 --disable-f90 --enable-shared --enable-mpi CPPFLAGS="-I/home/ra010009/a04199/petsc-hash-pkgs/40131e/include" LIBS="-Wl,-rpath,/home/ra010009/a04199/petsc-hash-pkgs/40131e/lib -L/home/ra010009/a04199/petsc-hash-pkgs/40131e/lib -lz" --enable-memalign=16 stdout: checking for a BSD-compatible install... /bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether /bin/gmake sets $(MAKE)... yes checking whether /bin/gmake supports nested variables... yes checking whether /bin/gmake supports nested variables... (cached) yes checking for a sed that does not truncate output... /bin/sed checking Major version... 2 checking Minor version... 0 checking Point version... 7-1727 o--------------------------------------- | Checking options o--------------------------------------- o--------------------------------------- | Checking MPI and related programs o--------------------------------------- checking whether we are using MPI... yes checking whether we are using MPI I/O... yes checking whether we are using MPI_Init_thread... yes checking for mpiexec... no checking for mpirun... no configure: F77 set to mpif77 configure: FC set to mpif90 configure: CC set to mpifccpx configure: CXX set to mpiFCCpx checking whether the Fortran 77 compiler works... no Error running configure on P4EST: Could not execute "['./configure --prefix=/home/ra010009/a04199/petsc-hash-pkgs/40131e MAKE=/bin/gmake --libdir=/home/ra010009/a04199/petsc-hash-pkgs/40131e/lib CC="mpifccpx" CFLAGS="-L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast" AR="/bin/ar" ARFLAGS="cr" CXX="mpiFCCpx" CXXFLAGS="-L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -Kfast -fPIC" --disable-fortran --disable-fc --disable-f77 --disable-f90 --enable-shared --enable-mpi CPPFLAGS="-I/home/ra010009/a04199/petsc-hash-pkgs/40131e/include" LIBS="-Wl,-rpath,/home/ra010009/a04199/petsc-hash-pkgs/40131e/lib -L/home/ra010009/a04199/petsc-hash-pkgs/40131e/lib -lz" --enable-memalign=16']": checking for a BSD-compatible install... /bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether /bin/gmake sets $(MAKE)... yes checking whether /bin/gmake supports nested variables... yes checking whether /bin/gmake supports nested variables... (cached) yes checking for a sed that does not truncate output... /bin/sed checking Major version... 2 checking Minor version... 0 checking Point version... 7-1727 o--------------------------------------- | Checking options o--------------------------------------- o--------------------------------------- | Checking MPI and related programs o--------------------------------------- checking whether we are using MPI... yes checking whether we are using MPI I/O... yes checking whether we are using MPI_Init_thread... yes checking for mpiexec... no checking for mpirun... no configure: F77 set to mpif77 configure: FC set to mpif90 configure: CC set to mpifccpx configure: CXX set to mpiFCCpx checking whether the Fortran 77 compiler works... noconfigure: error: in `/vol0004/ra010009/a04199/petsc/arch-fugaku-fujitsu/externalpackages/git.p4est': configure: error: Fortran 77 compiler cannot create executables See `config.log' for more details Output in config.log for P4EST: This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by p4est configure 2.0.7-1727, which was generated by GNU Autoconf 2.69. Invocation command line was $ ./configure --prefix=/home/ra010009/a04199/petsc-hash-pkgs/40131e MAKE=/bin/gmake --libdir=/home/ra010009/a04199/petsc-hash-pkgs/40131e/lib CC=mpifccpx CFLAGS=-L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast AR=/bin/ar ARFLAGS=cr CXX=mpiFCCpx CXXFLAGS=-L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -Kfast -fPIC --disable-fortran --disable-fc --disable-f77 --disable-f90 --enable-shared --enable-mpi CPPFLAGS=-I/home/ra010009/a04199/petsc-hash-pkgs/40131e/include LIBS=-Wl,-rpath,/home/ra010009/a04199/petsc-hash-pkgs/40131e/lib -L/home/ra010009/a04199/petsc-hash-pkgs/40131e/lib -lz --enable-memalign=16 ## --------- ## ## Platform. ## ## --------- ## hostname = fn01sv05 uname -m = x86_64 uname -r = 4.18.0-193.el8.x86_64 uname -s = Linux uname -v = #1 SMP Fri Mar 27 14:35:58 UTC 2020 /usr/bin/uname -p = x86_64 /bin/uname -X = unknown /bin/arch = x86_64 /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /opt/FJSVxtclanga/tcsds-1.2.31/bin PATH: /opt/local/openssh/bin PATH: /usr/share/Modules/bin PATH: /opt/local/openssh/bin PATH: /usr/local/bin PATH: /bin PATH: /usr/bin PATH: /usr/local/sbin PATH: /usr/sbin PATH: /home/ra010009/a04199/.local/bin PATH: /home/ra010009/a04199/bin ## ----------- ## ## Core tests. ## ## ----------- ## configure:3002: checking for a BSD-compatible install configure:3070: result: /bin/install -c configure:3081: checking whether build environment is sane configure:3136: result: yes configure:3287: checking for a thread-safe mkdir -p configure:3326: result: /bin/mkdir -p configure:3333: checking for gawk configure:3349: found /bin/gawk configure:3360: result: gawk configure:3371: checking whether /bin/gmake sets $(MAKE) configure:3393: result: yes configure:3422: checking whether /bin/gmake supports nested variables configure:3439: result: yes configure:3576: checking whether /bin/gmake supports nested variables configure:3593: result: yes configure:3604: checking for a sed that does not truncate output configure:3668: result: /bin/sed configure:3679: checking Major version configure:3681: result: 2 configure:3683: checking Minor version configure:3685: result: 0 configure:3687: checking Point version configure:3689: result: 7-1727 configure:3922: checking whether we are using MPI configure:3924: result: yes configure:3941: checking whether we are using MPI I/O configure:3943: result: yes configure:3960: checking whether we are using MPI_Init_thread configure:3962: result: yes configure:3972: checking for mpiexec configure:4002: result: no configure:3972: checking for mpirun configure:4002: result: no configure:4036: F77 set to mpif77 configure:4043: FC set to mpif90 configure:4049: CC set to mpifccpx configure:4055: CXX set to mpiFCCpx configure:4308: checking for Fortran 77 compiler version configure:4317: mpif77 --version >&5 ./configure: line 4319: mpif77: command not found configure:4328: $? = 127 configure:4317: mpif77 -v >&5 ./configure: line 4319: mpif77: command not found configure:4328: $? = 127 configure:4317: mpif77 -V >&5 ./configure: line 4319: mpif77: command not found configure:4328: $? = 127 configure:4317: mpif77 -qversion >&5 ./configure: line 4319: mpif77: command not found configure:4328: $? = 127 configure:4343: checking whether the Fortran 77 compiler works configure:4365: mpif77 conftest.f -Wl,-rpath,/home/ra010009/a04199/petsc-hash-pkgs/40131e/lib -L/home/ra010009/a04199/petsc-hash-pkgs/40131e/lib -lz >&5 ./configure: line 4367: mpif77: command not found configure:4369: $? = 127 configure:4407: result: no configure: failed program was: | program main | | end configure:4412: error: in `/vol0004/ra010009/a04199/petsc/arch-fugaku-fujitsu/externalpackages/git.p4est': configure:4414: error: Fortran 77 compiler cannot create executables See `config.log' for more details ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set=set ac_cv_env_CC_value=mpifccpx ac_cv_env_CFLAGS_set=set ac_cv_env_CFLAGS_value='-L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast' ac_cv_env_CPPFLAGS_set=set ac_cv_env_CPPFLAGS_value=-I/home/ra010009/a04199/petsc-hash-pkgs/40131e/include ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set=set ac_cv_env_CXXFLAGS_value='-L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -Kfast -fPIC' ac_cv_env_CXX_set=set ac_cv_env_CXX_value=mpiFCCpx ac_cv_env_F77_set= ac_cv_env_F77_value= ac_cv_env_FCFLAGS_set= ac_cv_env_FCFLAGS_value= ac_cv_env_FC_set= ac_cv_env_FC_value= ac_cv_env_FFLAGS_set= ac_cv_env_FFLAGS_value= ac_cv_env_LDFLAGS_set= ac_cv_env_LDFLAGS_value= ac_cv_env_LIBS_set=set ac_cv_env_LIBS_value='-Wl,-rpath,/home/ra010009/a04199/petsc-hash-pkgs/40131e/lib -L/home/ra010009/a04199/petsc-hash-pkgs/40131e/lib -lz' ac_cv_env_LT_SYS_LIBRARY_PATH_set= ac_cv_env_LT_SYS_LIBRARY_PATH_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_path_SED=/bin/sed ac_cv_path_install='/bin/install -c' ac_cv_path_mkdir=/bin/mkdir ac_cv_prog_AWK=gawk ac_cv_prog_make__bin_gmake_set=yes am_cv_make_support_nested_variables=yes ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='${SHELL} /vol0004/ra010009/a04199/petsc/arch-fugaku-fujitsu/externalpackages/git.p4est/build-aux/missing aclocal-1.16' AMDEPBACKSLASH='' AMDEP_FALSE='' AMDEP_TRUE='' AMTAR='$${TAR-tar}' AM_BACKSLASH='\' AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)' AM_DEFAULT_VERBOSITY='1' AM_V='$(V)' AR='/bin/ar' AUTOCONF='${SHELL} /vol0004/ra010009/a04199/petsc/arch-fugaku-fujitsu/externalpackages/git.p4est/build-aux/missing autoconf' AUTOHEADER='${SHELL} /vol0004/ra010009/a04199/petsc/arch-fugaku-fujitsu/externalpackages/git.p4est/build-aux/missing autoheader' AUTOMAKE='${SHELL} /vol0004/ra010009/a04199/petsc/arch-fugaku-fujitsu/externalpackages/git.p4est/build-aux/missing automake-1.16' AWK='gawk' CC='mpifccpx' CCDEPMODE='' CFLAGS='-L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -fPIC -Kfast' CPP='' CPPFLAGS='-I/home/ra010009/a04199/petsc-hash-pkgs/40131e/include' CXX='mpiFCCpx' CXXCPP='' CXXDEPMODE='' CXXFLAGS='-L /opt/FJSVxtclanga/tcsds-1.2.29/lib64 -lfjlapack -Kfast -fPIC' CYGPATH_W='echo' C_VERSION='' DEFS='' DEPDIR='' DLLTOOL='' DSYMUTIL='' DUMPBIN='' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='' EXEEXT='' F77='mpif77' FC='mpif90' FCFLAGS='' FCLIBS='' FFLAGS='' FGREP='' FLIBS='' GREP='' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' LD='' LDFLAGS='' LIBOBJS='' LIBS='-Wl,-rpath,/home/ra010009/a04199/petsc-hash-pkgs/40131e/lib -L/home/ra010009/a04199/petsc-hash-pkgs/40131e/lib -lz' LIBTOOL='' LINT='' LINT_FALSE='' LINT_FLAGS='' LINT_TRUE='' LIPO='' LN_S='' LTLIBOBJS='' LT_SYS_LIBRARY_PATH='' MAKEINFO='${SHELL} /vol0004/ra010009/a04199/petsc/arch-fugaku-fujitsu/externalpackages/git.p4est/build-aux/missing makeinfo' MANIFEST_TOOL='' MKDIR_P='/bin/mkdir -p' MPI_INCLUDES='' MPI_INCLUDE_PATH='' NM='' NMEDIT='' OBJDUMP='' OBJEXT='' OTOOL64='' OTOOL='' P4EST_DISTCLEAN='' P4EST_DIST_DENY_FALSE='' P4EST_DIST_DENY_TRUE='' P4EST_ENABLE_BUILD_2D_FALSE='#' P4EST_ENABLE_BUILD_2D_TRUE='' P4EST_ENABLE_BUILD_3D_FALSE='#' P4EST_ENABLE_BUILD_3D_TRUE='' P4EST_ENABLE_BUILD_P6EST_FALSE='#' P4EST_ENABLE_BUILD_P6EST_TRUE='' P4EST_ENABLE_DEBUG_FALSE='' P4EST_ENABLE_DEBUG_TRUE='#' P4EST_ENABLE_MEMALIGN_FALSE='' P4EST_ENABLE_MEMALIGN_TRUE='' P4EST_ENABLE_MPIIO_FALSE='#' P4EST_ENABLE_MPIIO_TRUE='' P4EST_ENABLE_MPITHREAD_FALSE='#' P4EST_ENABLE_MPITHREAD_TRUE='' P4EST_ENABLE_MPI_FALSE='#' P4EST_ENABLE_MPI_TRUE='' P4EST_ENABLE_OPENMP_FALSE='' P4EST_ENABLE_OPENMP_TRUE='' P4EST_ENABLE_PTHREAD_FALSE='' P4EST_ENABLE_PTHREAD_TRUE='' P4EST_ENABLE_VTK_BINARY_FALSE='#' P4EST_ENABLE_VTK_BINARY_TRUE='' P4EST_ENABLE_VTK_COMPRESSION_FALSE='#' P4EST_ENABLE_VTK_COMPRESSION_TRUE='' P4EST_ENABLE_VTK_DOUBLES_FALSE='' P4EST_ENABLE_VTK_DOUBLES_TRUE='#' P4EST_F77_COMPILER='' P4EST_FC_COMPILER='' P4EST_HAVE_LPTHREAD_FALSE='' P4EST_HAVE_LPTHREAD_TRUE='' P4EST_HAVE_LUA_FALSE='' P4EST_HAVE_LUA_TRUE='' P4EST_HAVE_OPENMP_FALSE='' P4EST_HAVE_OPENMP_TRUE='' P4EST_HAVE_ZLIB_FALSE='' P4EST_HAVE_ZLIB_TRUE='' P4EST_MPIRUN='' P4EST_MPIRUN_FALSE='' P4EST_MPIRUN_TRUE='#' P4EST_MPI_TEST_FLAGS='' P4EST_PETSC_INCLUDE_DIRS='' P4EST_PETSC_LINK_LIBS='' P4EST_PROVIDE_GETOPT_FALSE='' P4EST_PROVIDE_GETOPT_TRUE='' P4EST_PROVIDE_OBSTACK_FALSE='' P4EST_PROVIDE_OBSTACK_TRUE='' P4EST_SC_AMFLAGS='' P4EST_SC_CPPFLAGS='' P4EST_SC_LDADD='' P4EST_SC_MK_INCLUDE='' P4EST_SC_MK_USE_FALSE='' P4EST_SC_MK_USE_TRUE='' P4EST_SC_SUBDIR='' P4EST_WITH_BLAS_FALSE='' P4EST_WITH_BLAS_TRUE='' P4EST_WITH_LAPACK_FALSE='' P4EST_WITH_LAPACK_TRUE='' P4EST_WITH_METIS_FALSE='' P4EST_WITH_METIS_TRUE='' P4EST_WITH_PETSC_FALSE='' P4EST_WITH_PETSC_TRUE='' P4EST_WITH_SC_FALSE='' P4EST_WITH_SC_TRUE='' PACKAGE='p4est' PACKAGE_BUGREPORT='info@p4est.org' PACKAGE_NAME='p4est' PACKAGE_PREFIX='P4EST' PACKAGE_STRING='p4est 2.0.7-1727' PACKAGE_TARNAME='p4est' PACKAGE_URL='' PACKAGE_VERSION='2.0.7-1727' PATH_SEPARATOR=':' PETSCARCH_PROG='' RANLIB='' SED='/bin/sed' SET_MAKE='' SHELL='/bin/sh' STRIP='' VERSION='2.0.7-1727' ac_ct_AR='' ac_ct_CC='' ac_ct_CXX='' ac_ct_DUMPBIN='' ac_ct_F77='' ac_ct_FC='' am__EXEEXT_FALSE='' am__EXEEXT_TRUE='' am__fastdepCC_FALSE='' am__fastdepCC_TRUE='' am__fastdepCXX_FALSE='' am__fastdepCXX_TRUE='' am__include='' am__isrc='' am__leading_dot='.' am__nodep='' am__quote='' am__tar='$${TAR-tar} chof - "$$tardir"' am__untar='$${TAR-tar} xf -' bindir='${exec_prefix}/bin' build='' build_alias='' build_cpu='' build_os='' build_vendor='' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix='NONE' host='' host_alias='' host_cpu='' host_os='' host_vendor='' htmldir='${docdir}' includedir='${prefix}/include' infodir='${datarootdir}/info' install_sh='${SHELL} /vol0004/ra010009/a04199/petsc/arch-fugaku-fujitsu/externalpackages/git.p4est/build-aux/install-sh' libdir='/home/ra010009/a04199/petsc-hash-pkgs/40131e/lib' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' mandir='${datarootdir}/man' mkdir_p='$(MKDIR_P)' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='/home/ra010009/a04199/petsc-hash-pkgs/40131e' program_transform_name='s,x,x,' psdir='${docdir}' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' subdirs='' sysconfdir='${prefix}/etc' target_alias='' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define PACKAGE_NAME "p4est" #define PACKAGE_TARNAME "p4est" #define PACKAGE_VERSION "2.0.7-1727" #define PACKAGE_STRING "p4est 2.0.7-1727" #define PACKAGE_BUGREPORT "info@p4est.org" #define PACKAGE_URL "" #define PACKAGE "p4est" #define VERSION "2.0.7-1727" #define VERSION_MAJOR 2 #define VERSION_MINOR 0 #define VERSION_POINT 7-1727 #define VTK_BINARY 1 #define ENABLE_VTK_BINARY 1 #define VTK_COMPRESSION 1 #define ENABLE_VTK_COMPRESSION 1 #define BUILD_2D 1 #define ENABLE_BUILD_2D 1 #define BUILD_3D 1 #define ENABLE_BUILD_3D 1 #define BUILD_P6EST 1 #define ENABLE_BUILD_P6EST 1 #define MPI 1 #define ENABLE_MPI 1 #define MPIIO 1 #define ENABLE_MPIIO 1 #define ENABLE_MPITHREAD 1 configure: exit 77 **** Configure header /home/ra010009/a04199/petsc-3a1s51fh/confdefs.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #define PETSC_Alignx(a,b) #define PETSC_BLASLAPACK_UNDERSCORE 1 #define PETSC_CLANGUAGE_C 1 #define PETSC_CXX_INLINE inline #define PETSC_CXX_RESTRICT __restrict #define PETSC_C_INLINE inline #define PETSC_C_RESTRICT __restrict #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_BZERO 1 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_HAVE_CXX_DIALECT_CXX11 1 #define PETSC_HAVE_CXX_DIALECT_CXX14 1 #define PETSC_HAVE_DLADDR 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_HAVE_ERF 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_FENV_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_GETWD 1 #define PETSC_HAVE_INTTYPES_H 1 #define PETSC_HAVE_ISINF 1 #define PETSC_HAVE_ISNAN 1 #define PETSC_HAVE_ISNORMAL 1 #define PETSC_HAVE_LGAMMA 1 #define PETSC_HAVE_LOG2 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_MALLOC_H 1 #define PETSC_HAVE_MEMALIGN 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE_MMAP 1 #define PETSC_HAVE_MPIIO 1 #define PETSC_HAVE_MPI_COMBINER_CONTIGUOUS 1 #define PETSC_HAVE_MPI_COMBINER_DUP 1 #define PETSC_HAVE_MPI_COMBINER_NAMED 1 #define PETSC_HAVE_MPI_EXSCAN 1 #define PETSC_HAVE_MPI_F90MODULE_VISIBILITY 1 #define PETSC_HAVE_MPI_FINALIZED 1 #define PETSC_HAVE_MPI_GET_ACCUMULATE 1 #define PETSC_HAVE_MPI_GET_LIBRARY_VERSION 1 #define PETSC_HAVE_MPI_IALLREDUCE 1 #define PETSC_HAVE_MPI_IBARRIER 1 #define PETSC_HAVE_MPI_INIT_THREAD 1 #define PETSC_HAVE_MPI_INT64_T 1 #define PETSC_HAVE_MPI_IN_PLACE 1 #define PETSC_HAVE_MPI_LONG_DOUBLE 1 #define PETSC_HAVE_MPI_NEIGHBORHOOD_COLLECTIVES 1 #define PETSC_HAVE_MPI_NONBLOCKING_COLLECTIVES 1 #define PETSC_HAVE_MPI_ONE_SIDED 1 #define PETSC_HAVE_MPI_PROCESS_SHARED_MEMORY 1 #define PETSC_HAVE_MPI_REDUCE_LOCAL 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER_BLOCK 1 #define PETSC_HAVE_MPI_RGET 1 #define PETSC_HAVE_MPI_TYPE_DUP 1 #define PETSC_HAVE_MPI_TYPE_GET_ENVELOPE 1 #define PETSC_HAVE_MPI_WIN_CREATE 1 #define PETSC_HAVE_NANOSLEEP 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_OMPI_MAJOR_VERSION 4 #define PETSC_HAVE_OMPI_MINOR_VERSION 0 #define PETSC_HAVE_OMPI_RELEASE_VERSION 1 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_PTHREAD_BARRIER_T 1 #define PETSC_HAVE_PTHREAD_H 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_SCHED_CPU_SET_T 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_STRUCT_SIGACTION 1 #define PETSC_HAVE_SYSINFO 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_SYS_PROCFS_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_SYS_SYSCTL_H 1 #define PETSC_HAVE_SYS_SYSINFO_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_USLEEP 1 #define PETSC_HAVE_VALGRIND 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_IS_COLORING_MAX USHRT_MAX #define PETSC_IS_COLORING_VALUE_TYPE short #define PETSC_IS_COLORING_VALUE_TYPE_F integer2 #define PETSC_LEVEL1_DCACHE_LINESIZE 32 #define PETSC_MAX_PATH_LEN 4096 #define PETSC_MEMALIGN 16 #define PETSC_MPIU_IS_COLORING_VALUE_TYPE MPI_UNSIGNED_SHORT #define PETSC_PYTHON_EXE "/bin/python" #define PETSC_SIGNAL_CAST #define PETSC_SIZEOF_ENUM 4 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG 8 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_USE_64BIT_INDICES 1 #define PETSC_USE_AVX512_KERNELS 1 #define PETSC_USE_BACKWARD_LOOP 1 #define PETSC_USE_CTABLE 1 #define PETSC_USE_DEBUGGER "gdb" #define PETSC_USE_INFO 1 #define PETSC_USE_LOG 1 #define PETSC_USE_MALLOC_COALESCED 1 #define PETSC_USE_REAL_DOUBLE 1 #define PETSC_USE_SHARED_LIBRARIES 1 #define PETSC_USE_VISIBILITY_C 1 #define PETSC_USE_VISIBILITY_CXX 1 #define PETSC_USING_64BIT_PTR 1 #define PETSC_VERSION_BRANCH_GIT "adams/landau-gpu-opt" #define PETSC_VERSION_DATE_GIT "2021-04-13 09:07:58 -0400" #define PETSC_VERSION_GIT "v3.15.0-147-g35973a90ab" #define PETSC__BSD_SOURCE 1 #define PETSC__DEFAULT_SOURCE 1 #define PETSC__GNU_SOURCE 1 #endif **** C specific Configure header /home/ra010009/a04199/petsc-3a1s51fh/conffix.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #if defined(__cplusplus) extern "C" { } #else #endif #endif ******************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): ------------------------------------------------------------------------------- Error running configure on P4EST ******************************************************************************* File "/vol0004/ra010009/a04199/petsc/config/configure.py", line 458, in petsc_configure framework.configure(out = sys.stdout) File "/vol0004/ra010009/a04199/petsc/config/BuildSystem/config/framework.py", line 1289, in configure self.processChildren() File "/vol0004/ra010009/a04199/petsc/config/BuildSystem/config/framework.py", line 1277, in processChildren self.serialEvaluation(self.childGraph) File "/vol0004/ra010009/a04199/petsc/config/BuildSystem/config/framework.py", line 1252, in serialEvaluation child.configure() File "/vol0004/ra010009/a04199/petsc/config/BuildSystem/config/package.py", line 1146, in configure self.executeTest(self.configureLibrary) File "/vol0004/ra010009/a04199/petsc/config/BuildSystem/config/base.py", line 138, in executeTest ret = test(*args,**kargs) File "/vol0004/ra010009/a04199/petsc/config/BuildSystem/config/package.py", line 904, in configureLibrary for location, directory, lib, incl in self.generateGuesses(): File "/vol0004/ra010009/a04199/petsc/config/BuildSystem/config/package.py", line 478, in generateGuesses d = self.checkDownload() File "/vol0004/ra010009/a04199/petsc/config/BuildSystem/config/package.py", line 612, in checkDownload return self.getInstallDir() File "/vol0004/ra010009/a04199/petsc/config/BuildSystem/config/package.py", line 367, in getInstallDir installDir = self.Install() File "/vol0004/ra010009/a04199/petsc/config/BuildSystem/config/package.py", line 1682, in Install raise RuntimeError('Error running configure on ' + self.PACKAGE) ================================================================================ Finishing configure run at Wed, 14 Apr 2021 20:40:51 +0900 ================================================================================