<html><head><meta http-equiv="Content-Type" content="text/html; charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class=""><br class=""><div><br class=""><blockquote type="cite" class=""><div class="">On 11 Mar 2021, at 6:16 AM, Barry Smith <<a href="mailto:bsmith@petsc.dev" class="">bsmith@petsc.dev</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><meta http-equiv="Content-Type" content="text/html; charset=us-ascii" class=""><div style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class=""><div class=""><br class=""></div> Eric,<div class=""><br class=""></div><div class=""> Sorry about not being more immediate. We still have this in our active email so you don't need to submit individual issues. We'll try to get to them as soon as we can.</div></div></div></blockquote><div><br class=""></div><div>Indeed, I’m still trying to figure this out.</div><div>I realized that some of my configure flags were different than yours, e.g., no --with-memalign.</div><div>I’ve also added SuperLU_DIST to my installation.</div><div>Still, I can’t reproduce any issue.</div><div>I will continue looking into this, it appears I’m seeing some valgrind errors, but I don’t know if this is some side effect of OpenMPI not being valgrind-clean (last time I checked, there was no error with MPICH).</div><div><br class=""></div><div>Thank you for your patience,</div><div>Pierre</div><div><br class=""></div><div><div>/usr/bin/gmake -f gmakefile test test-fail=1</div><div>Using MAKEFLAGS: test-fail=1</div><div> TEST arch-linux2-c-opt-ompi/tests/counts/snes_tutorials-ex12_quad_hpddm_reuse_baij.counts</div><div> ok snes_tutorials-ex12_quad_hpddm_reuse_baij</div><div> ok diff-snes_tutorials-ex12_quad_hpddm_reuse_baij</div><div> TEST arch-linux2-c-opt-ompi/tests/counts/ksp_ksp_tests-ex33_superlu_dist_2.counts</div><div> ok ksp_ksp_tests-ex33_superlu_dist_2</div><div> ok diff-ksp_ksp_tests-ex33_superlu_dist_2</div><div> TEST arch-linux2-c-opt-ompi/tests/counts/ksp_ksp_tests-ex49_superlu_dist.counts</div><div> ok ksp_ksp_tests-ex49_superlu_dist+nsize-1herm-0_conv-0</div><div> ok diff-ksp_ksp_tests-ex49_superlu_dist+nsize-1herm-0_conv-0</div><div> ok ksp_ksp_tests-ex49_superlu_dist+nsize-1herm-0_conv-1</div><div> ok diff-ksp_ksp_tests-ex49_superlu_dist+nsize-1herm-0_conv-1</div><div> ok ksp_ksp_tests-ex49_superlu_dist+nsize-1herm-1_conv-0</div><div> ok diff-ksp_ksp_tests-ex49_superlu_dist+nsize-1herm-1_conv-0</div><div> ok ksp_ksp_tests-ex49_superlu_dist+nsize-1herm-1_conv-1</div><div> ok diff-ksp_ksp_tests-ex49_superlu_dist+nsize-1herm-1_conv-1</div><div> ok ksp_ksp_tests-ex49_superlu_dist+nsize-4herm-0_conv-0</div><div> ok diff-ksp_ksp_tests-ex49_superlu_dist+nsize-4herm-0_conv-0</div><div> ok ksp_ksp_tests-ex49_superlu_dist+nsize-4herm-0_conv-1</div><div> ok diff-ksp_ksp_tests-ex49_superlu_dist+nsize-4herm-0_conv-1</div><div> ok ksp_ksp_tests-ex49_superlu_dist+nsize-4herm-1_conv-0</div><div> ok diff-ksp_ksp_tests-ex49_superlu_dist+nsize-4herm-1_conv-0</div><div> ok ksp_ksp_tests-ex49_superlu_dist+nsize-4herm-1_conv-1</div><div> ok diff-ksp_ksp_tests-ex49_superlu_dist+nsize-4herm-1_conv-1</div><div> TEST arch-linux2-c-opt-ompi/tests/counts/ksp_ksp_tutorials-ex50_tut_2.counts</div><div> ok ksp_ksp_tutorials-ex50_tut_2</div><div> ok diff-ksp_ksp_tutorials-ex50_tut_2</div><div> TEST arch-linux2-c-opt-ompi/tests/counts/ksp_ksp_tests-ex33_superlu_dist.counts</div><div> ok ksp_ksp_tests-ex33_superlu_dist</div><div> ok diff-ksp_ksp_tests-ex33_superlu_dist</div><div> TEST arch-linux2-c-opt-ompi/tests/counts/snes_tutorials-ex56_hypre.counts</div><div> ok snes_tutorials-ex56_hypre</div><div> ok diff-snes_tutorials-ex56_hypre</div><div> TEST arch-linux2-c-opt-ompi/tests/counts/ksp_ksp_tutorials-ex56_2.counts</div><div> ok ksp_ksp_tutorials-ex56_2</div><div> ok diff-ksp_ksp_tutorials-ex56_2</div><div> TEST arch-linux2-c-opt-ompi/tests/counts/snes_tutorials-ex17_3d_q3_trig_elas.counts</div><div> ok snes_tutorials-ex17_3d_q3_trig_elas</div><div> ok diff-snes_tutorials-ex17_3d_q3_trig_elas</div><div> TEST arch-linux2-c-opt-ompi/tests/counts/snes_tutorials-ex12_quad_hpddm_reuse_threshold_baij.counts</div><div> ok snes_tutorials-ex12_quad_hpddm_reuse_threshold_baij</div><div> ok diff-snes_tutorials-ex12_quad_hpddm_reuse_threshold_baij</div><div> TEST arch-linux2-c-opt-ompi/tests/counts/ksp_ksp_tutorials-ex5_superlu_dist_3.counts</div><div>not ok ksp_ksp_tutorials-ex5_superlu_dist_3 # Error code: 1</div><div>#<span class="Apple-tab-span" style="white-space:pre"> </span>srun: error: Unable to create step for job 1426755: More processors requested than permitted</div><div> ok ksp_ksp_tutorials-ex5_superlu_dist_3 # SKIP Command failed so no diff</div><div> TEST arch-linux2-c-opt-ompi/tests/counts/ksp_ksp_tutorials-ex5f_superlu_dist.counts</div><div> ok ksp_ksp_tutorials-ex5f_superlu_dist # SKIP Fortran required for this test</div><div> TEST arch-linux2-c-opt-ompi/tests/counts/snes_tutorials-ex12_tri_parmetis_hpddm_baij.counts</div><div> ok snes_tutorials-ex12_tri_parmetis_hpddm_baij</div><div> ok diff-snes_tutorials-ex12_tri_parmetis_hpddm_baij</div><div> TEST arch-linux2-c-opt-ompi/tests/counts/snes_tutorials-ex19_tut_3.counts</div><div> ok snes_tutorials-ex19_tut_3</div><div> ok diff-snes_tutorials-ex19_tut_3</div><div> TEST arch-linux2-c-opt-ompi/tests/counts/snes_tutorials-ex17_3d_q3_trig_vlap.counts</div><div> ok snes_tutorials-ex17_3d_q3_trig_vlap</div><div> ok diff-snes_tutorials-ex17_3d_q3_trig_vlap</div><div> TEST arch-linux2-c-opt-ompi/tests/counts/ksp_ksp_tutorials-ex5f_superlu_dist_3.counts</div><div> ok ksp_ksp_tutorials-ex5f_superlu_dist_3 # SKIP Fortran required for this test</div><div> TEST arch-linux2-c-opt-ompi/tests/counts/snes_tutorials-ex19_superlu_dist.counts</div><div> ok snes_tutorials-ex19_superlu_dist</div><div> ok diff-snes_tutorials-ex19_superlu_dist</div><div> TEST arch-linux2-c-opt-ompi/tests/counts/snes_tutorials-ex56_attach_mat_nearnullspace-1_bddc_approx_hypre.counts</div><div> ok snes_tutorials-ex56_attach_mat_nearnullspace-1_bddc_approx_hypre</div><div> ok diff-snes_tutorials-ex56_attach_mat_nearnullspace-1_bddc_approx_hypre</div><div> TEST arch-linux2-c-opt-ompi/tests/counts/ksp_ksp_tutorials-ex49_hypre_nullspace.counts</div><div> ok ksp_ksp_tutorials-ex49_hypre_nullspace</div><div> ok diff-ksp_ksp_tutorials-ex49_hypre_nullspace</div><div> TEST arch-linux2-c-opt-ompi/tests/counts/snes_tutorials-ex19_superlu_dist_2.counts</div><div> ok snes_tutorials-ex19_superlu_dist_2</div><div> ok diff-snes_tutorials-ex19_superlu_dist_2</div><div> TEST arch-linux2-c-opt-ompi/tests/counts/ksp_ksp_tutorials-ex5_superlu_dist_2.counts</div><div>not ok ksp_ksp_tutorials-ex5_superlu_dist_2 # Error code: 1</div><div>#<span class="Apple-tab-span" style="white-space:pre"> </span>srun: error: Unable to create step for job 1426755: More processors requested than permitted</div><div> ok ksp_ksp_tutorials-ex5_superlu_dist_2 # SKIP Command failed so no diff</div><div> TEST arch-linux2-c-opt-ompi/tests/counts/snes_tutorials-ex56_attach_mat_nearnullspace-0_bddc_approx_hypre.counts</div><div> ok snes_tutorials-ex56_attach_mat_nearnullspace-0_bddc_approx_hypre</div><div> ok diff-snes_tutorials-ex56_attach_mat_nearnullspace-0_bddc_approx_hypre</div><div> TEST arch-linux2-c-opt-ompi/tests/counts/ksp_ksp_tutorials-ex64_1.counts</div><div> ok ksp_ksp_tutorials-ex64_1</div><div> ok diff-ksp_ksp_tutorials-ex64_1</div><div> TEST arch-linux2-c-opt-ompi/tests/counts/ksp_ksp_tutorials-ex5_superlu_dist.counts</div><div>not ok ksp_ksp_tutorials-ex5_superlu_dist # Error code: 1</div><div>#<span class="Apple-tab-span" style="white-space:pre"> </span>srun: error: Unable to create step for job 1426755: More processors requested than permitted</div><div> ok ksp_ksp_tutorials-ex5_superlu_dist # SKIP Command failed so no diff</div><div> TEST arch-linux2-c-opt-ompi/tests/counts/ksp_ksp_tutorials-ex5f_superlu_dist_2.counts</div><div> ok ksp_ksp_tutorials-ex5f_superlu_dist_2 # SKIP Fortran required for this test</div></div><br class=""><blockquote type="cite" class=""><div class=""><div style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class=""><div class=""> Barry</div><div class=""><br class=""><div class=""><br class=""><blockquote type="cite" class=""><div class="">On Mar 10, 2021, at 11:03 PM, Eric Chamberland <<a href="mailto:Eric.Chamberland@giref.ulaval.ca" class="">Eric.Chamberland@giref.ulaval.ca</a>> wrote:</div><br class="Apple-interchange-newline"><div class="">
<meta http-equiv="Content-Type" content="text/html; charset=UTF-8" class="">
<div class=""><p class="">Barry,</p><p class="">to get a some follow up on --with-openmp=1 failures, shall I open
gitlab issues for:</p><p class="">a) all hypre failures giving <span style="white-space: pre-wrap;" class="">DIVERGED_INDEFINITE_PC</span></p><p class=""><span style="white-space: pre-wrap;" class="">b) all superlu_dist failures giving different results with </span><span style="white-space: pre-wrap;" class=""><span style="white-space: pre-wrap;" class="">initia and "Exceeded timeout limit of 60 s"</span></span></p><p class=""><span style="white-space: pre-wrap;" class=""><span style="white-space: pre-wrap;" class="">c) hpddm failures "free(): invalid next size (fast)" and "Segmentation Violation"
</span></span></p><p class=""><span style="white-space: pre-wrap;" class=""><span style="white-space: pre-wrap;" class="">d) all tao's </span></span><span style="white-space: pre-wrap;" class=""><span style="white-space: pre-wrap;" class=""><span style="white-space: pre-wrap;" class=""><span style="white-space: pre-wrap;" class="">"Exceeded timeout limit of 60 s"</span></span></span></span></p><p class=""><span style="white-space: pre-wrap;" class=""><span style="white-space: pre-wrap;" class=""><span style="white-space: pre-wrap;" class=""><span style="white-space: pre-wrap;" class="">I don't see how I could do all these debugging by myself...</span></span></span></span></p><p class=""><span style="white-space: pre-wrap;" class=""><span style="white-space: pre-wrap;" class=""><span style="white-space: pre-wrap;" class=""><span style="white-space: pre-wrap;" class="">Thanks,</span></span></span></span></p><p class=""><span style="white-space: pre-wrap;" class=""><span style="white-space: pre-wrap;" class=""><span style="white-space: pre-wrap;" class=""><span style="white-space: pre-wrap;" class="">Eric
</span></span></span></span></p>
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