Executing: uname -s stdout: Darwin ================================================================================ ================================================================================ Starting configure run at Mon, 21 Dec 2020 15:01:41 -0600 Configure Options: --configModules=PETSc.Configure --optionsModule=config.compilerOptions --download-chaco --download-ctetgen --download-exodusii --download-hdf5 --download-med --download-metis --download-mpich --download-mumps --download-netcdf --download-parmetis --download-pnetcdf --download-scalapack --download-triangle --download-zlib --prefix=/Users/jacobfaibussowitsch/NoSync/petscpackages --with-blaslapack --with-cc=clang --with-cxx=clang++ --with-fc=gfortran --with-gmp --with-mpfr --with-python-dir=/usr/local/opt/python/libexec/bin --with-zstd PETSC_ARCH=master-arch-darwin-c-debug Working directory: /Users/jacobfaibussowitsch/NoSync/petsc Machine platform: uname_result(system='Darwin', node='Jacobs-MacBook-Pro.local', release='20.2.0', version='Darwin Kernel Version 20.2.0: Wed Dec 2 20:39:59 PST 2020; root:xnu-7195.60.75~1/RELEASE_X86_64', machine='x86_64') Python version: 3.9.1 (default, Dec 17 2020, 10:08:12) [Clang 12.0.0 (clang-1200.0.32.27)] ================================================================================ Environmental variables SHELL=/bin/bash LSCOLORS=ExFxBxDxCxegedabagacad PETSC_PACK_DIR=/Users/jacobfaibussowitsch/NoSync/petscpackages XPC_FLAGS=0x0 TERM_PROGRAM_VERSION=440 GIT_PS1_SHOWUPSTREAM=auto PETSC_GIT_BRANCH_PREVIOUS=jacobf/2020-12-14/docs/port-website-to-sphinx __CFBundleIdentifier=com.apple.Terminal SSH_AUTH_SOCK=/private/tmp/com.apple.launchd.TlPIxcbS2n/Listeners GIT_PS1_SHOWDIRTYSTATE=1 mcsmasterx11=0 TERM_SESSION_ID=BF3E841D-6353-47E3-A27F-A58772A75384 EDITOR=emacsclient PWD=/Users/jacobfaibussowitsch/NoSync/petsc LOGNAME=jacobfaibussowitsch LOC=/Users/jacobfaibussowitsch/NoSync/petscdocs GIT_PS1_SHOWCOLORHINTS=1 alcftutorialdir=/home/jfaibussowitsch/petsc/src/ts/examples/tutorials HOME=/Users/jacobfaibussowitsch LANG=en_US.UTF-8 NO_SYNC_BASE=/Users/jacobfaibussowitsch/NoSync PETSC_GITLAB_USER_NAME=Jfaibussowitsch mcsmaster=0 LAMMPS_DIR=/Users/jacobfaibussowitsch/NoSync/lammps TMPDIR=/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/ PROMPT_COMMAND=prompt_command CLICOLOR=1 DOCKER_BUILDKIT=1 PETSC_DIR=/Users/jacobfaibussowitsch/NoSync/petsc SLEPC_DIR=/Users/jacobfaibussowitsch/NoSync/petsc/arch-slepc-lammps/externalpackages/git.slepc TERM=xterm-256color PETSC_GITLAB_PRIVATE_TOKEN=t48hzyzhw1mBX8Rzy7d8 WARP3D_HOME=/Users/jacobfaibussowitsch/NoSync/warp3d USER=jacobfaibussowitsch PETSC_GIT_BRANCH_PREFIX=jacobf LIBRARY_PATH=/usr/local/lib olcftutorialdir=/ccs/home/jfaibussow/petsc/src/ts/examples/tutorials PETSC_ARCH=master-arch-darwin-c-debug clustermaster=0 alcfmaster=0 DISPLAY=/private/tmp/com.apple.launchd.L4SfhQAcsj/org.macosforge.xquartz:0 SHLVL=1 XPC_SERVICE_NAME=0 LD_LIBRARY_PATH=/usr/local/lib PS1=[mast...debug]\[\][\[\]LOC\[(B\]\[\]]\[(B\]\[\033[36m\]$(parse_git_branch)\[\033[m\]@\[\033[33;1m\]\w\[\033[m\]$ LAMMPS_ARCH=custom_link PATH=/usr/local/opt/ccache/libexec:/usr/local/opt/gnu-sed/libexec/gnubin:/usr/local/bin:/Users/jacobfaibussowitsch/NoSync/petscpackages/bin:/usr/local/sbin:/Users/jacobfaibussowitsch/.cargo/bin:/usr/bin:/usr/sbin:/bin:/sbin:/usr/X11R6/bin:/opt/local/bin REMOTE_USER=jacobfaibussowitsch OLDPWD=/Users/jacobfaibussowitsch/NoSync/petsc TERM_PROGRAM=Apple_Terminal BASH_FUNC_parse_petsc_arch%%=() { new_petsc_arch=${PETSC_ARCH//"arch-"/}; maxlen=15; cutlen=4; shortstr=$(shorten_string ${new_petsc_arch} ${maxlen} ${cutlen}); if [[ "${CCACHE_DISABLE@a}" == *x* ]]; then echo "${PSYELLOW}${shortstr}${PSCLEAR}"; else echo "$shortstr"; fi } BASH_FUNC_pmaint%%=() { PREVDIR=`pwd`; echo "${PREVDIR}"; cd ${PETSC_DIR}; echo "RECONFIGURING ${PETSC_ARCH} $@"; python3 ./${PETSC_ARCH}/lib/petsc/conf/reconfigure-${PETSC_ARCH}.py $@; cd ${PREVDIR} } BASH_FUNC_spa%%=() { if [ $# -eq 0 ]; then spa_internal; else lenarches=${#MY_PETSC_ARCH_LIST[@]}; list2arch=("arch-darwin-c-debug" "64-arch-darwin-c-debug" "master-arch-darwin-c-debug" "arch-slepc-lammps" "arch-darwin-c-opt" "arch-darwin-c-clang-opt" "${PETSC_ARCH}"); if [ $1 -ge 0 ] || [ $1 -lt $lenarches ]; then echo ${list2arch[$1]}; export PETSC_ARCH=${list2arch[$1]}; fi; fi } _=/usr/local/bin/python3 __CF_USER_TEXT_ENCODING=0x1F5:0x0:0x0 Files in path provided by default path /usr/local/opt/ccache/libexec: gcc-4.9 c++-9 g++ c++-7 gcc-4.7 g++-4.5 gcc-4.0 g++-4.2 c++ g++-4.3 c++-6 gcc-4.6 g++-4.4 gcc-4.8 clang c++-8 g++-8 c++-4.4 c++-4.3 g++-6 c++-10 g++-7 c++-4.2 c++-4.5 g++-9 g++-3.3 gcc-5 g++3 gcc c++3 g++2 c++-3.3 g++-4.8 gcc-4.3 gcc-4.4 gcc-10 g++-4.6 gcc2 c++-5 gcc-4.5 g++-4.7 gcc-4.2 g++-4.0 g++-4.9 gcc3 c++-4.0 c++-4.7 c++-4.9 g++-5 g++-10 clang++ c++-4.8 c++-4.6 gcc-8 gcc-6 cc gcc-3.3 gcc-7 gcc-9 /usr/local/opt/gnu-sed/libexec/gnubin: sed /usr/local/bin: ppmtouil lto-dump-10 lzmainfo ncinfo xwdtopnm ppmtorgb3 pamtohdiff pbmtoppa md5sum unzstd gpgtar ccmake ppmtoyuvsplit gpgv pip3.9 gsha512sum msgconv pbmtonokia dot2gxl leaftoppm g-ir-compiler ndiff event_rpcgen.py gusers pnminvert pkg-config pbmpage pnmrotate bdftogd hwloc-compress-dir gprintenv gmknod rst2man.pyc pgmslice ppmshadow anytopnm asciitopgm jemalloc-config ppmtoppm pgmkernel tifftopnm msggrep pbmtoescp2 ppmcie gdk-pixbuf-pixdata ddbugtopbm pgmhist rawtoppm shuf gmake gdd webpng pnmcut aclocal pnmhistmap gtsort palmtopnm pamseq pcre2grep autopoint qdarkstyle fitstopnm prezip-bin pampick hwloc-bind pngtopam pzstd pambrighten helpdev ppmmix cppcheck wget grealpath g-ir-annotation-tool grmdir pnmtofits pamrecolor pgmmake pamaltsat x86_64-apple-darwin19-gcc-ranlib-10 pinentry jupyter-run pbmtog3 meshio-info cluster gfold pyjson5 gcc-ranlib-10 pbmtomrf git-gui pamtilt gnl nghttp sexp-conv greadlink gshred pbmtodjvurle gv2gml gmv xzdec tiffsplit pambayer gxl2dot ppmforge pnmtosgi ppmtojpeg wheel3 runcon gts2oogl mtvtoppm pamstretch fax2tiff tred pamfunc gmkdir ccache pcdovtoppm pylint rst2xetex.py msgcomm gdb gkill git-receive-pack pnmnoraw pycodestyle docker fc-list pnmpaste guniq pamsharpness unflatten thefuck ppmtoilbm gpr gtscompare acountry jupyter-nbextension lispmtopgm truncate gtester ppmrainbow rstpep2html.pyc pbmtopgm pnmtops pbmtocis autoscan notary gd2togif intercept-build 411toppm pip2 gfortran mm2gv asn1Decoding 2to3 pbmtoxbm ptx hyperkit ppmfade pamperspective python3 pnmtoddif pamfind ghead spyder png-fix-itxt nc4tonc3 dot gcov-dump-10 pamslice rst2latex.py gpg gfortran-10 c++-10 pamsharpmap ppmtotga pybabel pbmtowbmp pgmenhance pyrcc5 glink gstat jbigtopnm pgmtosbig cmake gdb-add-index rst2xetex.pyc gmktemp zstdless etags ppmflash gpgscm tiffdump gyes jlpm pamaddnoise nghttpx pytest pbmtogem ppmspread ppmddumpfont gsha1sum gitk easy_install fc-pattern ilbmtoppm pbmtox10bm pnmfile flake8 gdk-pixbuf-query-loaders kbxutil gawk-5.1.0 unxz ppmdmkfont less applygnupgdefaults pybtex-format nghttpd pbmtolps hwloc-distrib tiff2bw pammasksharpen jiv freetype-config pip3 gpg-error b2sum pgmnorm gr2fonttest awk gnutls-serv grm sunicontopnm pcre2test gdbus-codegen fc-validate pamtopdbimg cjpeg autom4te ipython nc3tonc4 ppmchange easy_install-3.8 pyls escp2topbm jpegtran guile-tools gvpack clang-format lstopo pbmminkowski libpng16-config gsha256sum yuvtoppm bashbug xzegrep ncat pinentry-tty gsettings gv2gxl emacs-27.1 VBoxManage pngfix zeisstopnm gfalse nano glib-compile-schemas pip_pypy3 webpmux pamscale pgmtopgm rst2odt.pyc fc-query tiffcmp undill pnmtopng cameratopam alphashape pnmtojpeg gwho gcov-tool-10 yuvsplittoppm gcut rasttopnm ppmtopjxl tiff2pdf pbmtoicon ebrowse pbmreduce ppmdist jupyter-notebook pamsistoaglyph twopi pbmtozinc unlzma gvdir pgmtexture pbmto4425 gdir ppmdim gchmod pbmpscale DRAWEXE ppmtopuzz ybmtopbm pbmtomgr pbmtopi3 hdifftopam pamexec ppmtowinicon diffimg analyze-build gbase32 pktopbm lz4cat pgmtolispm sha224sum aspell-import x86_64-apple-darwin19-c++-10 gdk-pixbuf-csource fiascotopnm pamdepth VBoxHeadless psktool hwloc-calc ghostid xxh64sum gnohup easy_install-3.9 gtr pnmarith pjtoppm gdirname xzfgrep pasteurize sirtopnm gtstemplate gsha384sum gchroot sphinx-build webpinfo gdtopng hwloc-info g-ir-generate libpng-config pspell-config exa pnmscalefixed qta-browser gdbm_dump pbmtomda docker-credential-ecr-login fltk-config isympy graphml2gv pamtompfont gpaste realpath gobject-query brushtopbm kubectl.docker gpgrt-config word-list-compress pnmsmooth asn1Coding pnmenlarge brew pnmtopclxl fstopgm pgmdeshadow ppmtopi1 f2py2.7 timeout ppmdcfont bmptopnm pnminterp g3topbm gpgsplit cpp-10 tac numfmt pamgetcolor gid pbmtoascii pnmcrop pnmtopalm pamsplit gpinky pbmlife pamundice xpmtoppm dirmngr lz4 autopep8 rletopnm pngtogd2 x86_64-apple-darwin19-gcc-ar-10 h2load rst2html.pyc rsync genv msgen sgitopnm rst2html4.pyc pbmtoepsi wheel sldtoppm patchwork prezip cython meshio-ascii unix2mac pnmflip eyuvtoppm nproc intercept-c++ autoupdate rst2html5.pyc pnmtosir gln sccmap pambackground g-ir-inspect rst2odt_prepstyles.py manweb gbasename rg pdbimgtopam jpeg2ktopam pnmtotiff pamshadedrelief git-upload-archive mdatopbm ppmtoeyuv ppmntsc djpeg meshio-compress picttoppm gtruncate stdbuf giftopnm rst2latex.pyc pnmindex analyze-cc pnmshear pnmtile pydocstyle annotate msgmerge pamtopnm happrox pamunlookup pamlevels tiffcrop mac2unix neotoppm wbmptopbm isort scan-build pbmtobbnbg gvmap __pycache__ pamrgbatopng rlatopam pgmramp rsync-ssl pnmcomp pamtooctaveimg gio-querymodules docker-credential-osxkeychain nping zstdgrep pamtohtmltbl chcon gcp pcdindex ppmtoneo fribidi ppmtosixel pnmtorast gts2dxf pnmhisteq gemtopbm idle3 gls gtrue gchown python3.9-config gdcmpgif preunzip nettle-pbkdf2 envsubst xz ppmdither pi1toppm pampaintspill spctoppm cairo-trace VirtualBox x86_64-apple-darwin19-gcc-nm-10 pbmtomatrixorbital gdparttopng mgrtopbm gsync fluid gnutls-cli-debug ximtoppm glib-compile-resources python3.9 guptime chardetect pamtogif ppmtoacad vboxwebsrv ksba-config msginit emacs draw.sh rai gsum emacsclient bash gtac adig pamdice macptopbm pamtosvg pbmtogo VBoxDTrace pkcs1-conv neato ppmtolj ppmtoxpm gexpand gruncon gpathchk img2webp hwloc-ls pamstretch-gen pbmmask meshio-decompress fuck yapf ppmglobe tiffdither sputoppm cmuwmtopbm gcc-10 htop pngtopnm pamstereogram python3-config f2py ipython3 git-citool tiffset automake-1.16 npth-config pip pamflip pfmtopam avstopam f2py3.8 vboximg-mount tgatoppm gnutls-certtool giftogd2 pbmtextps pypy3.6 pango-view ppmpat pamtoxvmini hpcdtoppm gnice pi3topbm pbmtoepson pnmnorm ppmtobmp gecho tiff2ps pnmtoxwd gdu futurize gb2sum pamcrater libassuan-config delaunay osage pango-list hb-ot-shape-closure qrttoppm gts2stl ppmtoarbtxt ppm3d adnshost gtouch gpgsm hwloc-patch pamcomp gmkfifo lzless cistopbm pamedge pyreverse gdf gvgen easy_install_pypy3 gjoin proxytrack pbmtoatk rst2html4.py f2py3.7 ppmtoterm vbox-img tiffinfo docker-credential-desktop jupyter-nbconvert gtest cairo-sphinx ppmdraw pnmconvol epylint gmd5sum black-primer pgmoil gresource bioradtopgm git-gui--askpass jsonschema psidtopgm f2py3.9 gunexpand pamtopfm gsort xxhsum ocsptool adnslogres pamtojpeg2k pamwipeout pamsummcol jpegtopnm glibtool com.docker.cli gsed hipstopgm ppmtopict xxh128sum keyring gawk cppcheck-htmlreport ahost gettext pnmcat pgmminkowski gvpr gtester-report nop pc1toppm gshuf pgmabel gfmt atktopbm ppmtogif pbmclean glibtoolize ppmrelief gettext.sh ctest intercept-cc aclocal-1.16 jupyter-troubleshoot custom.sh pamfixtrunc webhttrack xzless pal2rgb cygdb xxh32sum zstd gunlink VBoxBalloonCtrl msgcmp lzcmp sphinx-apidoc pnmstitch jeprof circo pcre2-config rst2html5.py gd2topng ppmtoicr watchgnupg gcsplit pydoc3.9 pygmentize xzcat pamhue mrftopbm gxl2gv g[ jupyter-migrate gwhoami pamthreshold autoreconf pamstack gsplit g-ir-scanner VBoxAutostart gseq gpg-agent gcc-nm-10 sha1sum pbmtocmuwm adnsresfilter wrjpgcom pnmtofiasco sha256sum meshio-binary ppmquant g++-10 autoconf lz4c pbmtoplot pbmmake pnmtotiffcmyk gcc-ar-10 pamtoavs pbmtosunicon pamsumm pnmpsnr gdircolors aspell vpnkit ppmtopgm msgcat acyclic pbmtopk gml2gv zstdcat tabulate pgmbentley autoheader hwloc-gather-cpuid gpg-error-config gtscheck pamendian imginfo rawtopgm ginstall pcretest gsha224sum p11tool recode-sr-latin VBoxBugReport glib-gettextize xzcmp shred pybtex-convert pamtofits gouldtoppm lzcat pnmtorle pamoil gpg-connect-agent pbmtoibm23xx git-credential-osxkeychain watch sfdp gpgconf gc pgmmedian nettle-hash hwloc-diff dirmngr-client analyze-c++ sha384sum gdk-pixbuf-thumbnailer pammixinterlace pbmtopsg3 lstopo-no-graphics DRAWEXE-7.5.0 fc-cache unlz4 env.sh gcomm ppmtopj pampop9 gtty pnmremap gcksum hwloc-ps gdbus pcxtoppm zstdmt gexpr gbase64 dumpsexp fc-cat meshio-convert gwc rename ppmtospu git-cvsserver ppmcolors ppmtoleaf addgnupghome rst2s5.pyc VirtualBoxVM lzdiff blackd idle3.9 pgmtost4 dijkstra cask pypy3 pip2.7 pnmtopnm pgmedge pamvalidate gdbmtool sbigtopgm gnproc msgexec jupyter-console rst2xml.py pyuic5 pamtotiff glib-genmarshal pcre-config ngettext git-clang-format ppmhist base32 dot_builtins prune rst2odt.py winicontoppm git-shell adnsheloex pgmmorphconv pamlookup gcov-10 dwebp x86_64-apple-darwin19-gcc-10.2.0 xbmtopbm ppmtoyuv f2py2 gptx ppmtomap pgmcrater gtimeout dos2unix subl ifnames pnmalias pinky pnmcolormap hostid pammixmulti pgmtopbm rsvg-convert pbmto10x x86_64-apple-darwin19-g++-10 unix2dos ppmtopcx srptool gd2copypal ppmrough ppmmake jupyter-serverextension gpwd lzmadec iptest3 fax2ps pnmmercator stl2gts rgb3toppm fc-match pnmgamma infotopam gtail lzgrep gts-config docker-compose msgunfmt pnmtoplainpnm lessecho pamdeinterlace pamgradient pnmsplit lesskey tiffcp fdp nmap lzmore cythonize xvminitoppm git-upload-pack run-with-aspell jupyter-trust pamfile danetool nettle-lfib-stream pnmnlfilt pybtex pamtouil gchcon virtualenv pamtodjvurle pgmtofs pngtogd pnmmargin bcomps pamchannel pnmquantall pbmtomacp f2py3 pbmtext diffmerge pnmpad ppmwheel glogname ppmlabel thinkjettopbm pnmquant pbmupc kubectl msgfilter guname winicontopam pamtosrf pamditherbw pbmtoptx pgmnoise pbmtolj gtee lzfgrep pamarith npx black gstty rst2pseudoxml.py ccomps fc-conflist gchgrp gcat glib-mkenums jupyter-qtconsole rst2xml.pyc xzmore asn1Parser hb-view pnmdepth pammosaicknit idn2 ppmquantall cwebp rmtrash tiffmedian 2to3-3.9 transform ppmshift yuy2topam pinentry-curses yat2m pamenlarge watchmedo xzgrep pamgauss rst2s5.py guile pydoc3 jupyter-kernelspec pamtotga hb-shape ggroups precat guile-snarf rst2odt_prepstyles.pyc pbmtoln03 pstopnm libgcrypt-config ppmtompeg jupyter-kernel jupyter jupyter-bundlerextension edgepaint svgtopam rst2html.py rst2pseudoxml.pyc lzma iptest rst2man.py mpicalc gdbm_load gsleep hmac256 pamcut jasper gemtopnm pbmtoybm spottopgm pamfix sha512sum p11-kit st4topgm gfactor npm srftopam py.test sphinx-quickstart gpg-wks-server pnmmontage x86_64-apple-darwin19-gfortran-10 htsserver pylupdate5 rdjpgcom jemalloc.sh ppmbrighten automake icontopbm lzegrep git cpack raw2tiff pamtris msgfmt ppmtoapplevol god gnutls-cli pgmtoppm gprintf guile-config custom_clang_64.sh ppm2tiff rstpep2html.py xzdiff msgattrib symilar gvcolor get_objgraph gstdbuf imgcmp pcregrep sphinx-autogen tiff2rgba x86_64-apple-darwin19-gcc-10 pamtopam pamrubber pamtowinicon ppmtoascii gnumfmt xgettext symcryptrun hb-subset ppmtv ppmtomitsu imgtoppm gio hwloc-annotate pamtopng gbasenc ppmnorm pyflakes ppmcolormask pamtable pnmscale gpgparsemail .keepme fc-scan gettextize guild VBoxVRDP msguniq bmptoppm pnmtojbig rnano httrack gdate /Users/jacobfaibussowitsch/NoSync/petscpackages/bin: h5perf mpif90 hydra_pmi_proxy h5copy h52gif h5pcc h5perf_serial pnetcdf-config mpirun cdfdiff h5unjam mpiexec.hydra mdump2 ncmpigen h5stat h5ls nccopy gif2h5 mdump3 h5jam mdump pnetcdf_version mpivars ncoffsets ncvalidator h5mkgrp mpif77 h5format_convert h5repack mpichversion mpicc h5watch h5pfc ncmpidiff medimport parkill ncdump mpicxx h5diff h5clear xmdump h5redeploy h5debug ph5diff h5repart h5import hydra_persist mpiexec xmdump2 nc-config mpic++ mpifort ncgen3 hydra_nameserver ncmpidump ncgen xmdump3 h5dump medconforme /usr/local/sbin: unbound-anchor unbound-checkconf unbound-control unbound unbound-control-setup unbound-host .keepme /Users/jacobfaibussowitsch/.cargo/bin: rls rustdoc cargo clippy-driver cargo-miri rust-lldb cargo-clippy rustc cargo-fmt rustup rustfmt rust-gdb /usr/bin: ptargrep5.30 uux cpan BuildStrings loads.d htmltree5.30 write lwp-mirror5.30 indent bzip2recover hdiutil top javah tee binhex5.18.pl xip wsimport bzfgrep qlmanage snmptranslate split chsh stty.pl xml2man pl2pm5.30 iprofiler man lpoptions tabs smtpd2.7.py rview lsvfs zgrep dbiprof zmore corelist5.28 cpanp-run-perl pod2usage5.30 gcov package-stash-conflicts5.30 iptab5.28 dbiprof5.30 vim idle2.7 mandoc_soelim macerror5.18 xjc lwp-request5.18 bzmore pp5.28 package-stash-conflicts cancel apply bzgrep umask g++ 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lwp-download5.28 hiutil ip2cc5.30 csdiagnose pip3 enc2xs5.18 lastwords rmid podchecker5.18 sed ld dbilogstrip5.30 awk ip2cc syscallbyproc.d snmpstatus uudecode psm UnRezWack fmt perlthanks5.18 zipdetails5.28 zless xslt-config sdef pod2man5.18 ncctl config_data5.28 jmc encguess5.28 pod2text bashbug mail chpass sips xcrun bzcmp lldb python2.7-config piconv5.28 chfn ipcount newaliases nano eyapp5.18 pfbtops lam pod2readme5.30 ipptool irb ipcount5.28 ptardiff bzless perlbug5.28 sysdiagnose logname tset chgrp cu grops printenv unvis grotty shasum5.30 atq seq fc AssetCacheManagerUtil colldef net-server5.30 jdb perl5.30 wish uname hpmdiagnose timer_analyser.d jstack parl unzip stty5.18.pl db_stat rmiregistry json_pp ptardiff5.30 zprint kinit mib2c podchecker5.28 od bsdtar perl findrule tbtdiagnose mcxquery lwp-download ppdpo crontab reset kextutil par5.30.pl bzcat dbicadmin ex perlthanks5.28 perlbug zipdetails5.18 jvisualvm footprint pod2man5.28 json_xs5.28 lsappinfo eqn db_load fwkdp piconv read ipcount5.18 perlbug5.18 snmpusm piconv5.18 execsnoop pagesize lp base64 ptargrep eyapp5.28 jar h2ph readlink opensnoop rake rvim jcmd dmc vimtutor phar perldoc5.30 xgettext5.30.pl from prove newproc.d gencat mdutil znew podchecker mcxrefresh colrm dbilogstrip pagestuff crlrefresh headerdoc2html lwp-dump5.18 tbl jrunscript find2perl filtercalltree afhash sandbox-exec snmpvacm stapler fwkpfv sftp wc jps rsync osacompile hdxml2manxml gzcat dbiproxy5.18 delv thermal pico podselect5.18 IOMFB_FDR_Loader pydoc2.7 shasum comm resolveLinks dbicadmin5.30 lpq java bundle gzip zipcloak git-upload-archive xml2-config encode_keychange traptoemail gcc smbutil diff ri pythonw2.7 agvtool cksum indxbib segedit zipnote parldyn5.28 ptar printf soelim AssetCacheTetheratorUtil column ldapexop ippfind syscallbysysc.d groups dwarfdump ppdc rs spfd config_data slogin latency lsm h2ph5.30 xar db_codegen dns-sd lwp-dump5.28 tab2space dbiproxy5.28 avconvert xsubpp5.30 jhsdb unzipsfx podselect5.28 treereg parl5.30 csreq whatis gperf php iconutil zipsplit lwp-dump pathopens.d xattr-2.7 tail whois nsupdate crc32 ldapdelete grep moose-outdated5.30 pstopdf rwbytype.d script pod2text5.30 vtool more ldapwhoami pl2pm h2ph5.18 ncinit tkmib cal afplay 2to3- addftinfo time ssh-agent afktool gcore pwhich javap xed uuname javaws texindex env pr head python-config scandeps5.28.pl xsubpp5.18 dsymutil clear manpath apropos units redo_prebinding info curl-config kgetcred rev SplitForks uniq tclsh binhex5.30.pl dbicadmin5.28 productsign mklocale pod2text5.18 defaults tic zip uulog atrm curl wdutil agentxtrap db_verify servertool newgrp timerfires rpcgen swcutil perlthanks post-grohtml moose-outdated5.18 parldyn5.30 snmpnetstat lastcomm getconf kpasswd vis dbiproxy instruments hpftodit ipcrm pic bputil net-snmp-config cpanp otool format-sql h2ph5.28 lwp-dump5.30 killall patch gdiffmk tailspin su ul compression_tool dbiproxy5.30 tkcon xsubpp5.28 ssh podselect5.30 kdestroy snmpgetnext type scandeps5.18.pl parl5.28 cpan2dist msgs xsubpp jhat CpMac tidy tftp easy_install-2.7 assetutil AssetCacheLocatorUtil orbd usbcfwflasher dbicadmin5.18 ktrace DeRez textutil xgettext.pl automator wsgen stat perldoc javac xcsdiagnose mdfind grodvi mdls codesign_allocate lookbib mddiagnose snmpbulkwalk keytool fileproviderctl binhex.pl dtruss dserr tiff2icns mandoc moose-outdated5.28 pbpaste policytool pod2text5.28 actool heap sum lskq dbilogstrip5.28 macbinary debinhex5.28.pl ncdestroy nc snmptrap tsort uuencode cpp swift batch sqlite3 make dig ptardiff5.18 zipdetails5.30 macerror infocmp apt trimforce nm flex++ osadecompile IOAccelMemory config_data5.30 ssh-add machine encguess5.30 wish8.5 screen snmpget piconv5.30 pcsctest codesign atos llvm-gcc mailq arch ssh-keygen snmptable kill.d pod2readme5.28 ditto getopts users snmpbulkget ipcount5.30 sdp perlbug5.30 shasum5.28 showmount taskinfo ar perldoc5.18 who mktemp unifdef yaa cut imptrace pack200 net-server5.28 ippeveprinter hdid dc biff perl5.28 mailx odutil jsadebugd xargs tkpp texi2dvi debinhex5.18.pl priclass.d ptardiff5.28 topsysproc nl podchecker5.30 dbilogstrip5.18 view jjs spfquery sample bg lipo seeksize.d eyapp clang++ setuids.d aa shlock symbols perlthanks5.30 pod2man5.30 afmtodit gzexe mkdep json_xs5.30 genstrings at what sdx m4 asa iptab format-sql5.18 swiftc nfsstat eyapp5.30 uupick ipcs pod2readme5.18 pluginkit as MvMac net-server5.18 fold gnumake perl5.18 log tmutil checknr certtool python2.7 vmmap shasum5.18 h2xs csrutil shar perldoc5.28 ldappasswd lkbib ResMerger bitesize.d db_checkpoint funzip power_report.sh iosnoop atsutil osalang dirname pod2man enc2xs treereg5.28 moo-outdated xgettext5.28.pl iopending infokey ncal cpan5.28 chflags fg rwbypid.d jmap dscl leaks splain5.18 nbdst mnthome jshell dsexport mdimport parldyn id procsystime cd quota uuto fuser dsimport csgather json_pp5.28 git-shell ldapsearch command snmp-bridge-mib egrep notifyutil cc dsmemberutil podselect pod2html5.28 grn psed whereis tccutil a2p find jstat zcat ip2cc5.18 unifdefall jlink enc2xs5.30 nroff pridist.d size timesyncanalyse libnetcfg5.28 par5.28.pl uttype uustat snmpwalk llvm-g++ scp instmodsh5.18 tnameserv true afinfo hidutil ldapadd pwpolicy profiles yacc kswitch xcodebuild tkpp5.30 jobs c89 sudo update_mcdp29xx bioutil splain5.28 tmdiagnose plockstat xgettext5.18.pl serialver afida pgrep yes lessecho sdiff afscexpand treereg5.18 spfquery5.30 cpan5.18 db_deadlock ldapcompare unexpand prove5.30 perlivp5.30 git-upload-pack ssh-copy-id grolj4 fixproc debinhex.pl lorder pod2html5.18 ranlib javadoc tput fgrep par.pl json_pp5.18 sigdist.d ppdhtml libnetcfg5.18 auval erb dappprof openssl instmodsh5.28 drutil jinfo ip2cc5.28 lwp-download5.30 splain pmset xmlcatalog zcmp ptargrep5.28 lwp-mirror5.28 rwsnoop jstatd htmltree5.28 lpr layerutil snmptest mib2c-update grog creatbyproc.d pstruct fdesetup flex hostinfo jcontrol MergePef lpstat SetFile pl2pm5.28 pod2html rebase tar rdoc uptime s2p pidpersec.d xpath5.18 schemagen avmediainfo corelist5.30 pod2usage5.28 dbiprof5.28 iptab5.30 cvcp package-stash-conflicts5.28 false zegrep memory_pressure pp5.30 uncompress lwp-request ncurses5.4-config findrule5.28 sampleproc db_recover ptar5.28 h2xs5.28 nmedit filebyproc.d bison tclsh8.5 jdeps productbuild zipinfo diffstat login db_dump smtpd.py cpuctl cpu_profiler.d which bundler iopattern finger mig sntp klist open GetFileInfo kmutil localedef ruby stringdups htmltree ptargrep5.18 git tr lwp-mirror5.18 htmltree5.18 banner leave jconsole paste RezWack moo-outdated5.18 bzip2 pod2usage5.18 uucp passwd dbiprof5.18 package-stash-conflicts5.18 macerror5.30 uuidgen pl2pm5.18 install_name_tool cmpdylib makeinfo php-config zfgrep xpath5.28 snfsdefrag zipdetails look findrule5.18 col dscacheutil ptar5.18 lwp-request5.30 zforce lwp-mirror malloc_history cpio nohup kcc ulimit rails bspatch RezDet hotspot.d cvaffinity gatherheaderdoc ppdi pcap-config jpackage avmetareadwrite update_dyld_shared_cache_root_mode gen_bridge_metadata gem spfd5.30 opendiff crc325.30 h2xs5.18 talk expect jimage lockstat dapptrace install-info xattr w gunzip /usr/sbin: dsconfigad htdbm netbiosd postlock systemsoundserverd dseditgroup avbdeviced rpcinfo BootCacheControl weakpass_edit periodic accton wfsctl postalias slapacl edquota sndiskmove pdisk amt lpadmin fdisk sysadminctl networksetup envvars ktutil setquota otctl php-fpm dnctl mDNSResponder iRATBW.mlmodelc repquota cupsfilter checkgid uuconv sharing vifs ac racoon dsenableroot xsanctl kdcsetup aslmanager screencapture htdigest rtsold chat DevToolsSecurity applecamerad logresolve cvdbset KernelEventAgent gpt scutil ioreg ab traceroute6 pwd_mkdb sysctl appsleepd sshd mDNSResponderHelper authserver appleh13camerad postmulti lsof pkgutil slapindex sc_auth ioclasscount uucico firmwarepasswd rarpd tsig-keygen kadmin.local syslogd taskpolicy filecoordinationd dot_clean PasswordService systemsetup zdump snmpd ndp coreaudiod rpcbind praudit usernoted postkick postcat netstat lpc slapadd krbservicesetup slapconfig rtadvd httxt2dbm distnoted mtree cupsdisable lpmove disktool purge rpc.statd cupsctl DirectoryService notifyd klist_cdhashes dtrace kextcache cupsd dbmmanage languagesetup skywalkctl mkpassdb postconf createhomedir ocspd iostat cvdb sa rpc.lockd uuxqt mkfile softwareupdate unsetpassword zic nfs4mapid postsuper htpasswd rotatelogs universalaccessd audit httpd bluetoothaudiod slapauth slappasswd localemanager asr cvupdatefs bless cvgather xscertadmin visudo uusched dsconfigldap smbdiagnose cfprefsd auditd uuchk cvfsck kextfind diskutil cvfsid sso_util vsdbutil ddns-confgen ioalloccount uasysdiagnose dev_mkdb hdik slapdn vpnd postqueue setkey tpctl repairHomePermissions spindump cupsreject traceroute quotaoff newsyslog postfix cvfsdb snmptrapd chroot arp cupsaccept nvram chown mkextunpack postlog installer pppd httpd-wrapper system_profiler fcgistarter bluetoothd slapschema kadmin spray cvversions kextlibs tcpdump xartutil securityd nlcontrol quotaon spctl vipw gssd slaptest automount scselect envvars-std graphicssession ckksctl lpinfo smbd serverinfo cvmkfs postmap postdrop cupsenable cron systemstats bnepd kextstat snquota cvlabel sendmail systemkeychain kcditto slapcat ipconfig auditreduce cvadmin WirelessRadioManagerd apachectl htcacheclean /bin: cat echo launchctl df pwd test csh wait4path unlink sleep stty date ed expr pax bash kill sh ps link tcsh dd mkdir ksh hostname dash rmdir mv ln ls cp sync zsh chmod rm [ /sbin: mount_hfs mount_apfs md5 fsck mount_udf quotacheck mount_cd9660 ping fsck_exfat mount_exfat fsck_udf shutdown route mount_webdav fsck_hfs nfsd reboot nfsiod fsck_cs fsck_apfs fstyp_msdos disklabel mount_msdos fsck_msdos ifconfig halt mount_9p mount_ntfs rtsol newfs_apfs umount fstyp kextunload mpioutil fstyp_ntfs emond mount_nfs newfs_udf mount_ftp pfctl mknod fstyp_udf dmesg mount fibreconfig fstyp_hfs newfs_hfs dynamic_pager launchd newfs_exfat apfs_unlockfv apfs_hfs_convert nologin mount_afp mount_smbfs mount_tmpfs ping6 kextload mount_cddafs mount_fdesc newfs_msdos mount_acfs mount_devfs /usr/X11R6/bin: xfs xfsinfo atobm xdpyinfo showrgb xlsfonts editres fonttosfnt xfontsel xclock xmore xman xmag xrefresh fc-list xdmshell xauth twm cxpm mkfontdir xclipboard png-fix-itxt ucs2any xterm bdftruncate xsetroot xmessage xcursorgen fc-pattern xkbvleds xkbbell freetype-config Xephyr fc-validate bitmap libpng16-config pngfix fc-query xkbprint luit xhost gtf listres x11perf Xorg libpng-config koi8rxterm xpr xstdcmap xgc mkfontscale setxkbmap xinit Xquartz xbacklight xdm xcmsdb xdpr xfindproxy xrdb xlsclients xprop xkeystone xeyes Xvfb Xnest xev startx xkbwatch xscope xfd sessreg xwud lndir xinput xconsole glxinfo sxpm xsetmode Xfake fslsfonts xcompmgr xrandr bmtoa xwd xmodmap glxgears fc-cache iceauth cvt xcutsel bdftopcf fc-cat xsetpointer xkbevd quartz-wm xsm appres xset xlsatoms fc-match oclock x11perfcomp resize showfont xditview xwininfo xvinfo xcalc xgamma makedepend viewres ico X gccmakedep xedit smproxy xkill xkbcomp xload font_cache xmh xlogo fstobdf uxterm fc-scan /opt/local/bin: idle 2to3 python3 daemondo pydoc python python3m-config sphinx-build idle3 python-config python3-config sphinx-apidoc 2to3-3 portmirror pyvenv port port_cutleaves portindex pydoc3 sphinx-quickstart portf python3m port-tclsh sphinx-autogen ============================================================================================= TESTING: configureExternalPackagesDir from config.framework(config/BuildSystem/config/framework.py:965) child config.utilities.macosFirewall 0.000067 ============================================================================================= TESTING: configureDebuggers from config.utilities.debuggers(config/BuildSystem/config/utilities/debuggers.py:21) Find a default debugger and determine its arguments Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS Checking for program /usr/local/opt/ccache/libexec/lldb...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/lldb...not found Checking for program /usr/local/bin/lldb...not found Checking for program /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/lldb...not found Checking for program /usr/local/sbin/lldb...not found Checking for program /Users/jacobfaibussowitsch/.cargo/bin/lldb...not found Checking for program /usr/bin/lldb...found Defined make macro "LLDB" to "/usr/bin/lldb" Defined "USE_DEBUGGER" to ""lldb"" Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS Checking for program /usr/local/opt/ccache/libexec/dsymutil...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/dsymutil...not found Checking for program /usr/local/bin/dsymutil...not found Checking for program /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/dsymutil...not found Checking for program /usr/local/sbin/dsymutil...not found Checking for program /Users/jacobfaibussowitsch/.cargo/bin/dsymutil...not found Checking for program /usr/bin/dsymutil...found Defined make macro "DSYMUTIL" to "/usr/bin/dsymutil" Defined make macro "DSYMUTIL" to "/usr/bin/dsymutil" Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS Defined "DO_NOT_SWAP_CHILD_FOR_DEBUGGER" to "1" child config.utilities.debuggers 0.026879 ============================================================================================= TESTING: configureDirectories from PETSc.options.petscdir(config/PETSc/options/petscdir.py:23) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 0 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 14 #define PETSC_VERSION_SUBMINOR 2 #define PETSC_VERSION_PATCH 0 #define PETSC_VERSION_DATE "unknown" #define PETSC_VERSION_GIT "unknown" #define PETSC_VERSION_DATE_GIT "unknown" #define PETSC_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_ PETSC_VERSION_EQ #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ child PETSc.options.petscdir 0.004047 ============================================================================================= TESTING: getDatafilespath from PETSc.options.dataFilesPath(config/PETSc/options/dataFilesPath.py:29) Checks what DATAFILESPATH should be child PETSc.options.dataFilesPath 0.001257 ============================================================================================= TESTING: configureGit from config.sourceControl(config/BuildSystem/config/sourceControl.py:24) Find the Git executable Checking for program /usr/local/opt/ccache/libexec/git...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/git...not found Checking for program /usr/local/bin/git...found Defined make macro "GIT" to "git" Executing: git --version stdout: git version 2.29.2 ============================================================================================= TESTING: configureMercurial from config.sourceControl(config/BuildSystem/config/sourceControl.py:35) Find the Mercurial executable Checking for program /usr/local/opt/ccache/libexec/hg...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/hg...not found Checking for program /usr/local/bin/hg...not found Checking for program /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/hg...not found Checking for program /usr/local/sbin/hg...not found Checking for program /Users/jacobfaibussowitsch/.cargo/bin/hg...not found Checking for program /usr/bin/hg...not found Checking for program /usr/sbin/hg...not found Checking for program /bin/hg...not found Checking for program /sbin/hg...not found Checking for program /usr/X11R6/bin/hg...not found Checking for program /opt/local/bin/hg...not found Checking for program /Users/jacobfaibussowitsch/NoSync/petsc/lib/petsc/bin/win32fe/hg...not found child config.sourceControl 0.013211 ============================================================================================= TESTING: configureInstallationMethod from PETSc.options.petscclone(config/PETSc/options/petscclone.py:20) lib/petsc/bin/maint exists. This appears to be a repository clone .git directory exists Executing: ['git', 'describe', '--match=v*'] stdout: v3.14.2-315-ga02893ccf2 Executing: ['git', 'log', '-1', '--pretty=format:%H'] stdout: a02893ccf275e4e9eab1b8a64959ed567773a402 Executing: ['git', 'log', '-1', '--pretty=format:%ci'] stdout: 2020-12-21 19:21:21 +0000 Executing: ['git', 'rev-parse', '--abbrev-ref', 'HEAD'] stdout: master Defined "VERSION_GIT" to ""v3.14.2-315-ga02893ccf2"" Defined "VERSION_DATE_GIT" to ""2020-12-21 19:21:21 +0000"" Defined "VERSION_BRANCH_GIT" to ""master"" child PETSc.options.petscclone 0.050188 ============================================================================================= TESTING: setNativeArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:31) ============================================================================================= TESTING: configureArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:43) Checks PETSC_ARCH and sets if not set configure hash file: master-arch-darwin-c-debug/lib/petsc/conf/configure-hash does not match, need to run configure Setting hashfile: master-arch-darwin-c-debug/lib/petsc/conf/configure-hash Deleting configure hash file: master-arch-darwin-c-debug/lib/petsc/conf/configure-hash Deleted configure hash file: master-arch-darwin-c-debug/lib/petsc/conf/configure-hash child PETSc.options.arch 0.080020 ============================================================================================= TESTING: setInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:39) setup installDir to either prefix or if that is not set to PETSC_DIR/PETSC_ARCH Defined make macro "PREFIXDIR" to "/Users/jacobfaibussowitsch/NoSync/petscpackages" ============================================================================================= TESTING: saveReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:85) ============================================================================================= TESTING: cleanConfDir from PETSc.options.installDir(config/PETSc/options/installDir.py:78) ============================================================================================= TESTING: configureInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:62) Makes installDir subdirectories if it does not exist for both prefix install location and PETSc work install location Changed persistence directory to /Users/jacobfaibussowitsch/NoSync/petsc/master-arch-darwin-c-debug/lib/petsc/conf ============================================================================================= TESTING: restoreReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:98) child PETSc.options.installDir 0.002630 ============================================================================================= TESTING: setExternalPackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:15) ============================================================================================= TESTING: cleanExternalpackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:22) child PETSc.options.externalpackagesdir 0.000646 ============================================================================================= TESTING: configureCLanguage from PETSc.options.languages(config/PETSc/options/languages.py:27) Choose whether to compile the PETSc library using a C or C++ compiler C language is C Defined "CLANGUAGE_C" to "1" Defined make macro "CLANGUAGE" to "C" child PETSc.options.languages 0.000776 ============================================================================================= TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1903) ============================================================================================= TESTING: checkEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1933) ============================================================================================= TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:1873) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ============================================================================================= TESTING: requireMpiLdPath from config.setCompilers(config/BuildSystem/config/setCompilers.py:1894) OpenMPI wrappers require LD_LIBRARY_PATH set ============================================================================================= TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:514) Initialize the compiler and linker flags Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Initialized HIPCCFLAGS to Initialized HIPCCFLAGS to Initialized LDFLAGS to Initialized SYCLCXXFLAGS to Initialized SYCLCXXFLAGS to Initialized LDFLAGS to Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Initialized CPPFLAGS to Initialized FPPFLAGS to Initialized CUDAPPFLAGS to -Wno-deprecated-gpu-targets Initialized CXXPPFLAGS to Initialized HIPPPFLAGS to -Wno-deprecated-gpu-targets Initialized SYCLPPFLAGS to -Wno-deprecated-gpu-targets Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized HIPCC_LINKER_FLAGS to [] Initialized SYCLCXX_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ============================================================================================= TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:689) Locate a functional C compiler Checking for program /usr/local/opt/ccache/libexec/clang...found Defined make macro "CC" to "clang" ===== Checking compiler Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lpetsc-ufod4vtr9mqHvKIQiVAm clang: error: linker command failed with exit code 1 (use -v to see invocation) ======== Checking running linked program ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o Testing executable /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest to see if it can be run Executing: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest Executing: clang --version stdout: Apple clang version 12.0.0 (clang-1200.0.32.28) Target: x86_64-apple-darwin20.2.0 Thread model: posix InstalledDir: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin ============================================================================================= TESTING: checkCPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:728) Locate a functional C preprocessor Checking for program /usr/local/opt/ccache/libexec/clang...found Defined make macro "CPP" to "clang -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : ============================================================================================= TESTING: checkCUDACompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:764) Locate a functional CUDA compiler Checking for program /usr/local/opt/ccache/libexec/nvcc...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/nvcc...not found Checking for program /usr/local/bin/nvcc...not found Checking for program /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/nvcc...not found Checking for program /usr/local/sbin/nvcc...not found Checking for program /Users/jacobfaibussowitsch/.cargo/bin/nvcc...not found Checking for program /usr/bin/nvcc...not found Checking for program /usr/sbin/nvcc...not found Checking for program /bin/nvcc...not found Checking for program /sbin/nvcc...not found Checking for program /usr/X11R6/bin/nvcc...not found Checking for program /opt/local/bin/nvcc...not found Checking for program /Users/jacobfaibussowitsch/NoSync/petsc/lib/petsc/bin/win32fe/nvcc...not found Checking for program /Developer/NVIDIA/CUDA-6.5/bin/nvcc...not found Checking for program /Users/jacobfaibussowitsch/NoSync/petsc/lib/petsc/bin/win32fe/nvcc...not found Unable to find programs ['nvcc'] providing listing of the specific search path Warning accessing /Developer/NVIDIA/CUDA-6.5/bin gives errors: can only concatenate str (not "builtin_function_or_method") to str Checking for program /usr/local/cuda/bin/nvcc...not found Checking for program /Users/jacobfaibussowitsch/NoSync/petsc/lib/petsc/bin/win32fe/nvcc...not found Unable to find programs ['nvcc'] providing listing of the specific search path Warning accessing /usr/local/cuda/bin gives errors: can only concatenate str (not "builtin_function_or_method") to str ============================================================================================= TESTING: checkCUDAPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:804) Locate a functional CUDA preprocessor ============================================================================================= TESTING: checkHIPCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:838) Locate a functional HIP compiler Checking for program /usr/local/opt/ccache/libexec/hipcc...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/hipcc...not found Checking for program /usr/local/bin/hipcc...not found Checking for program /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/hipcc...not found Checking for program /usr/local/sbin/hipcc...not found Checking for program /Users/jacobfaibussowitsch/.cargo/bin/hipcc...not found Checking for program /usr/bin/hipcc...not found Checking for program /usr/sbin/hipcc...not found Checking for program /bin/hipcc...not found Checking for program /sbin/hipcc...not found Checking for program /usr/X11R6/bin/hipcc...not found Checking for program /opt/local/bin/hipcc...not found Checking for program /Users/jacobfaibussowitsch/NoSync/petsc/lib/petsc/bin/win32fe/hipcc...not found Checking for program /usr/local/opt/ccache/libexec/opt/rocm/bin/hipcc...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/opt/rocm/bin/hipcc...not found Checking for program /usr/local/bin/opt/rocm/bin/hipcc...not found Checking for program /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/local/sbin/opt/rocm/bin/hipcc...not found Checking for program /Users/jacobfaibussowitsch/.cargo/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/sbin/opt/rocm/bin/hipcc...not found Checking for program /bin/opt/rocm/bin/hipcc...not found Checking for program /sbin/opt/rocm/bin/hipcc...not found Checking for program /usr/X11R6/bin/opt/rocm/bin/hipcc...not found Checking for program /opt/local/bin/opt/rocm/bin/hipcc...not found Checking for program /Users/jacobfaibussowitsch/NoSync/petsc/lib/petsc/bin/win32fe/opt/rocm/bin/hipcc...not found ============================================================================================= TESTING: checkHIPPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:874) Placeholder for now ============================================================================================= TESTING: checkSYCLCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:895) Locate a functional SYCL compiler ============================================================================================= TESTING: checkSYCLPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:921) Placeholder for now ============================================================================================= TESTING: checkCxxCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:1008) Locate a functional Cxx compiler Checking for program /usr/local/opt/ccache/libexec/clang++...found Defined make macro "CXX" to "clang++" ===== Checking compiler Executing: clang++ -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ===== Checking linker Executing: clang++ -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: clang++ -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o ===== Checking linker Executing: clang++ -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: clang++ -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lpetsc-ufod4vtr9mqHvKIQiVAm clang: error: linker command failed with exit code 1 (use -v to see invocation) ======== Checking running linked program ===== Checking linker Executing: clang++ -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: clang++ -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o Testing executable /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest to see if it can be run Executing: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest Executing: clang++ --version stdout: Apple clang version 12.0.0 (clang-1200.0.32.28) Target: x86_64-apple-darwin20.2.0 Thread model: posix InstalledDir: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin ============================================================================================= TESTING: checkCxxPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:1049) Locate a functional Cxx preprocessor Checking for program /usr/local/opt/ccache/libexec/clang++...found Defined make macro "CXXPP" to "clang++ -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang++ -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc Preprocess stderr before filtering: : Preprocess stderr after filtering: : ============================================================================================= TESTING: checkFortranCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:1148) Locate a functional Fortran compiler Checking for program /usr/local/opt/ccache/libexec/gfortran...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/gfortran...not found Checking for program /usr/local/bin/gfortran...found Defined make macro "FC" to "gfortran" ===== Checking compiler Executing: gfortran -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.F90 Successful compile: Source: program main end ===== Checking linker Executing: gfortran -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: gfortran -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o ===== Checking linker Executing: gfortran -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: gfortran -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status ======== Checking running linked program ===== Checking linker Executing: gfortran -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: gfortran -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o Testing executable /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest to see if it can be run Executing: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest Executing: gfortran --version stdout: GNU Fortran (GCC) 10.2.0 Copyright (C) 2020 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. ============================================================================================= TESTING: checkFortranPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:1185) Locate a functional Fortran preprocessor Checking for program /usr/local/opt/ccache/libexec/gfortran...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/gfortran...not found Checking for program /usr/local/bin/gfortran...found Defined make macro "FPP" to "gfortran -E" Deleting "FPP" Checking for program /usr/local/opt/ccache/libexec/gfortran...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/gfortran...not found Checking for program /usr/local/bin/gfortran...found Defined make macro "FPP" to "gfortran --use cpp32" Deleting "FPP" ============================================================================================= TESTING: checkFortranComments from config.setCompilers(config/BuildSystem/config/setCompilers.py:1207) Make sure fortran comment "!" works ===== Checking compiler Executing: gfortran -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.F90 Successful compile: Source: program main ! comment end Fortran comments can use ! in column 1 ============================================================================================= TESTING: checkLargeFileIO from config.setCompilers(config/BuildSystem/config/setCompilers.py:1342) ============================================================================================= TESTING: checkArchiver from config.setCompilers(config/BuildSystem/config/setCompilers.py:1441) Check that the archiver exists and can make a library usable by the compiler Executing: ar -V Executing: ar -V Defined make macro "FAST_AR_FLAGS" to "Scq" ===== Checking compiler Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/local/opt/ccache/libexec/ar...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/ar...not found Checking for program /usr/local/sbin/ar...not found Checking for program /Users/jacobfaibussowitsch/.cargo/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/local/opt/ccache/libexec/ranlib...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/ranlib...not found Checking for program /usr/local/sbin/ranlib...not found Checking for program /Users/jacobfaibussowitsch/.cargo/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" Executing: /usr/bin/ar cr /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/libconf1.a /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conf1.o Executing: /usr/bin/ranlib -c /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/libconf1.a ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c:6:26: warning: if statement has empty body [-Wempty-body] int b = foo(1); if (b); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c:6:26: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -L/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -lconf1 Defined make macro "AR_FLAGS" to "cr" Defined make macro "AR_LIB_SUFFIX" to "a" ============================================================================================= TESTING: checkSharedLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1556) Check that the linker can produce shared libraries Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS Checking shared linker clang using flags ['-dynamiclib -single_module', '-undefined dynamic_lookup', '-multiply_defined suppress', '-no_compact_unwind'] Checking for program /usr/local/opt/ccache/libexec/clang...found Defined make macro "LD_SHARED" to "clang" Trying C compiler flag Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -dynamiclib -single_module /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o Valid C linker flag -dynamiclib -single_module Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -undefined dynamic_lookup /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o Valid C linker flag -undefined dynamic_lookup Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -multiply_defined suppress /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o Valid C linker flag -multiply_defined suppress Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -no_compact_unwind /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 1 stderr: clang: error: unknown argument: '-no_compact_unwind' Rejecting linker flag -no_compact_unwind due to nonzero status from link ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(void); int main() { int ret = foo(); if (ret) {} ; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -L/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -lconftest Using shared linker clang with flags ['-dynamiclib -single_module', '-undefined dynamic_lookup', '-multiply_defined suppress'] and library extension dylib Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS ============================================================================================= TESTING: checkLinkerMac from config.setCompilers(config/BuildSystem/config/setCompilers.py:1630) Tests some Apple Mac specific linker flags Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-bind_at_load /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o Valid C linker flag -Wl,-bind_at_load Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-bind_at_load /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o Valid C linker flag -Wl,-multiply_defined,suppress Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-multiply_defined -Wl,suppress -Wl,-bind_at_load -Wl,-multiply_defined,suppress /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o Valid C linker flag -Wl,-multiply_defined -Wl,suppress Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-commons,use_dylibs -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o Valid C linker flag -Wl,-commons,use_dylibs Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-search_paths_first -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o Valid C linker flag -Wl,-search_paths_first Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o Valid C linker flag -Wl,-no_compact_unwind Executing: clang++ -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: clang++ -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-bind_at_load /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-bind_at_load Executing: clang++ -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: clang++ -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-bind_at_load /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-multiply_defined,suppress Executing: clang++ -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: clang++ -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-multiply_defined -Wl,suppress -Wl,-bind_at_load -Wl,-multiply_defined,suppress /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-multiply_defined -Wl,suppress Executing: clang++ -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: clang++ -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-commons,use_dylibs -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-commons,use_dylibs Executing: clang++ -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: clang++ -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-search_paths_first -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-search_paths_first Executing: clang++ -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: clang++ -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-no_compact_unwind Executing: gfortran -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: gfortran -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-bind_at_load /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o Valid FC linker flag -Wl,-bind_at_load Executing: gfortran -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: gfortran -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-bind_at_load /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o Valid FC linker flag -Wl,-multiply_defined,suppress Executing: gfortran -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: gfortran -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-multiply_defined -Wl,suppress -Wl,-bind_at_load -Wl,-multiply_defined,suppress /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o Valid FC linker flag -Wl,-multiply_defined -Wl,suppress Executing: gfortran -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: gfortran -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-commons,use_dylibs -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o Valid FC linker flag -Wl,-commons,use_dylibs Executing: gfortran -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: gfortran -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-search_paths_first -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o Valid FC linker flag -Wl,-search_paths_first Executing: gfortran -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: gfortran -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o Valid FC linker flag -Wl,-no_compact_unwind Executing: uname -s stdout: Darwin ============================================================================================= TESTING: checkPIC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1285) Determine the PIC option for each compiler Trying Cxx for PIC code without any compiler flag Executing: clang++ -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ===== Checking linker Executing: clang++ -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o Accepted Cxx PIC code without compiler flag Trying FC for PIC code without any compiler flag Executing: gfortran -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.F90 Successful compile: Source: program main end ===== Checking linker Executing: gfortran -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.F90 Successful compile: Source: function foo(a) real:: a,x,bar common /xx/ x x=a foo = bar(x) end Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o Accepted FC PIC code without compiler flag ============================================================================================= TESTING: checkSharedLinkerPaths from config.setCompilers(config/BuildSystem/config/setCompilers.py:1668) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS Executing: clang -V Trying C linker flag -Wl,-rpath, Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petsc -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o Valid C linker flag -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petsc Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS Executing: clang -V Trying Cxx linker flag -Wl,-rpath, Executing: clang++ -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: clang++ -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petsc -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petsc Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS Executing: clang -V Trying FC linker flag -Wl,-rpath, Executing: gfortran -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: gfortran -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petsc -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o Valid FC linker flag -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petsc ============================================================================================= TESTING: checkLibC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1707) Test whether we need to explicitly include libc in shared linking - Mac OSX requires an explicit reference to libc for shared linking ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {void *chunk = malloc(31); free(chunk); return 0;} Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o Shared linking does not require an explicit libc reference ============================================================================================= TESTING: checkDynamicLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1753) Check that the linker can dynamicaly load shared libraries Checking for header: dlfcn.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_DLFCN_H" to "1" Checking for functions [dlopen dlsym dlclose] in library ['dl'] [] ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } char dlsym(); static void _check_dlsym() { dlsym(); } char dlclose(); static void _check_dlclose() { dlclose(); } int main() { _check_dlopen(); _check_dlsym(); _check_dlclose();; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -ldl Defined "HAVE_LIBDL" to "1" Adding ['dl'] to LIBS Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS Checking dynamic linker clang using flags ['-dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress'] Checking for program /usr/local/opt/ccache/libexec/clang...found Defined make macro "DYNAMICLINKER" to "clang" Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -ldl Valid C linker flag -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("test");return 0;} Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -ldl ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { void *handle = dlopen("/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/libconftest.dylib", 0); int (*foo)(void) = (int (*)(void)) dlsym(handle, "foo"); if (!foo) { printf("Could not load symbol\n"); return -1; } if ((*foo)()) { printf("Invalid return from foo()\n"); return -1; } if (dlclose(handle)) { printf("Could not close library\n"); return -1; } ; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -ldl Using dynamic linker clang with flags ['-dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress'] and library extension dylib ============================================================================================= TESTING: output from config.setCompilers(config/BuildSystem/config/setCompilers.py:1802) Output module data as defines and substitutions Substituting "CC" with "clang" Substituting "CFLAGS" with "" Defined make macro "CC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "CPP" with "clang -E" Substituting "CPPFLAGS" with "" Substituting "CXX" with "clang++" Substituting "CXX_CXXFLAGS" with "" Substituting "CXXFLAGS" with "" Substituting "CXX_LINKER_SLFLAG" with "-Wl,-rpath," Substituting "CXXPP" with "clang++ -E" Substituting "CXXPPFLAGS" with "" Substituting "FC" with "gfortran" Substituting "FFLAGS" with "" Defined make macro "FC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "LDFLAGS" with "" Substituting "LIBS" with "-ldl " Substituting "SHARED_LIBRARY_FLAG" with "-dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress" child config.setCompilers 12.780335 ============================================================================================= TESTING: checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:31) ============================================================================================= TESTING: configureSharedLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:47) Checks whether shared libraries should be used, for which you must - Specify --with-shared-libraries - Have found a working shared linker Defines PETSC_USE_SHARED_LIBRARIES if they are used Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS Defined make rule "shared_arch" with dependencies "shared_darwin" and code [] Defined make macro "SONAME_FUNCTION" to "$(1).$(2).dylib" Defined make macro "SL_LINKER_FUNCTION" to "-dynamiclib -install_name $(call SONAME_FUNCTION,$(1),$(2)) -compatibility_version $(2) -current_version $(3) -single_module -multiply_defined suppress -undefined dynamic_lookup" Defined make macro "BUILDSHAREDLIB" to "yes" Defined "USE_SHARED_LIBRARIES" to "1" ============================================================================================= TESTING: configureDynamicLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:92) Checks whether dynamic loading is available (with dlfcn.h and libdl) Defined "HAVE_DYNAMIC_LIBRARIES" to "1" ============================================================================================= TESTING: configureSerializedFunctions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:98) Defines PETSC_SERIALIZE_FUNCTIONS if they are used Requires shared libraries child PETSc.options.sharedLibraries 0.010917 ============================================================================================= TESTING: configureIndexSize from PETSc.options.indexTypes(config/PETSc/options/indexTypes.py:39) Defined make macro "PETSC_INDEX_SIZE" to "32" child PETSc.options.indexTypes 0.001514 ============================================================================================= TESTING: configureCompilerFlags from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:81) Get the default compiler flags Defined make macro "C_VERSION" to "Apple clang version 12.0.0 (clang-1200.0.32.28)" Defined make macro "MPICC_SHOW" to "Unavailable" Trying C compiler flag -Wall Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -Wall /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wall Trying C compiler flag -Wwrite-strings Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -Wall -Wwrite-strings /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wwrite-strings Trying C compiler flag -Wno-strict-aliasing Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wno-strict-aliasing Trying C compiler flag -Wno-unknown-pragmas Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wno-unknown-pragmas Trying C compiler flag -fstack-protector Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fstack-protector Trying C compiler flag -fno-stack-check Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fno-stack-check Trying C compiler flag -mfp16-format=ieee Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -mfp16-format=ieee /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 1 stderr: clang: error: unknown argument: '-mfp16-format=ieee' Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -mfp16-format=ieee due to nonzero status from link Rejecting compiler flag -mfp16-format=ieee due to clang: error: unknown argument: '-mfp16-format=ieee' PETSc Error: No output file produced Rejected C compiler flag -mfp16-format=ieee Trying C compiler flag -Qunused-arguments Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Qunused-arguments Trying C compiler flag -fvisibility=hidden Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fvisibility=hidden Defined make macro "MPICC_SHOW" to "Unavailable" Trying C compiler flag -g3 Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -g3 Defined make macro "Cxx_VERSION" to "Apple clang version 12.0.0 (clang-1200.0.32.28)" Defined make macro "MPICXX_SHOW" to "Unavailable" Trying Cxx compiler flag -Wall Executing: clang++ -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -Wall /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wall Trying Cxx compiler flag -Wwrite-strings Executing: clang++ -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -Wall -Wwrite-strings /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wwrite-strings Trying Cxx compiler flag -Wno-strict-aliasing Executing: clang++ -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wno-strict-aliasing Trying Cxx compiler flag -Wno-unknown-pragmas Executing: clang++ -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wno-unknown-pragmas Trying Cxx compiler flag -fstack-protector Executing: clang++ -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -fstack-protector Trying Cxx compiler flag -fno-stack-check Executing: clang++ -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -fno-stack-check Trying Cxx compiler flag -fvisibility=hidden Executing: clang++ -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -fvisibility=hidden Defined make macro "MPICXX_SHOW" to "Unavailable" Trying Cxx compiler flag -g Executing: clang++ -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -g Defined make macro "FC_VERSION" to "GNU Fortran (GCC) 10.2.0" Defined make macro "MPIFC_SHOW" to "Unavailable" Trying FC compiler flag -Wall Executing: gfortran -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -Wall /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag -Wall Trying FC compiler flag -ffree-line-length-0 Executing: gfortran -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -Wall -ffree-line-length-0 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag -ffree-line-length-0 Trying FC compiler flag -Wno-unused-dummy-argument Executing: gfortran -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag -Wno-unused-dummy-argument Defined make macro "MPIFC_SHOW" to "Unavailable" Trying FC compiler flag -g Executing: gfortran -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag -g child config.compilerFlags 2.016963 Executing: clang --help | head -n 20 stdout: OVERVIEW: clang LLVM compiler USAGE: clang [options] file... OPTIONS: -### Print (but do not run) the commands to run for this compilation --analyzer-output Static analyzer report output format (html|plist|plist-multi-file|plist-html|sarif|text). --analyze Run the static analyzer -arcmt-migrate-emit-errors Emit ARC errors even if the migrator can fix them -arcmt-migrate-report-output Output path for the plist report -B Add to search path for binaries and object files used implicitly -CC Include comments from within macros in preprocessed output -cl-denorms-are-zero OpenCL only. Allow denormals to be flushed to zero. -cl-fast-relaxed-math OpenCL only. Sets -cl-finite-math-only and -cl-unsafe-math-optimizations, and defines __FAST_RELAXED_MATH__. -cl-finite-math-only OpenCL only. Allow floating-point optimizations that assume arguments and results are not NaNs or +-Inf. -cl-fp32-correctly-rounded-divide-sqrt OpenCL only. Specify that single precision floating-point divide and sqrt used in the program source are correctly rounded. ============================================================================================= TESTING: checkC99Flag from config.compilers(config/BuildSystem/config/compilers.py:1416) Check for -std=c99 or equivalent flag Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { float x[2],y; y = FLT_ROUNDS; // c++ comment int j = 2; for (int i=0; i<2; i++){ x[i] = i*j*y; } ; return 0; } Accepted C99 compile flag: ============================================================================================= TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:156) Check for the C/CXX restrict keyword Executing: clang -V ===== Checking compiler Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.c:5:20: warning: unused variable 'x' [-Wunused-variable] float * __restrict x;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set C restrict keyword to __restrict Defined "C_RESTRICT" to "__restrict" ============================================================================================= TESTING: checkCFormatting from config.compilers(config/BuildSystem/config/compilers.py:411) Activate format string checking if using the GNU compilers ============================================================================================= TESTING: checkCInline from config.compilers(config/BuildSystem/config/compilers.py:126) Check for C inline keyword ===== Checking compiler Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set C Inline keyword to inline Defined "C_INLINE" to "inline" ============================================================================================= TESTING: checkDynamicLoadFlag from config.compilers(config/BuildSystem/config/compilers.py:422) Checks that dlopen() takes RTLD_XXX, and defines PETSC_HAVE_RTLD_XXX if it does ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LAZY);dlopen(libname, RTLD_NOW);dlopen(libname, RTLD_LOCAL);dlopen(libname, RTLD_GLOBAL); ; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_LAZY" to "1" Defined "HAVE_RTLD_NOW" to "1" Defined "HAVE_RTLD_LOCAL" to "1" Defined "HAVE_RTLD_GLOBAL" to "1" ============================================================================================= TESTING: checkCLibraries from config.compilers(config/BuildSystem/config/compilers.py:220) Determines the libraries needed to link with C compiled code ===== Checking compiler Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void asub(void) {char s[16];printf("testing %s",s);} ===== Checking linker Executing: gfortran -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.F90 Successful compile: Source: program main print*,'testing' stop end Executing: gfortran -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/confc.o -ldl Possible ERROR while running linker: stderr: ld: warning: object file (/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/confc.o) was built for newer macOS version (11.0) than being linked (10.16) C libraries are not needed when using Fortran linker ===== Checking compiler Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void asub(void) {char s[16];printf("testing %s",s);} ===== Checking linker Executing: clang++ -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Executing: clang++ -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/confc.o -ldl C libraries are not needed when using C++ linker ============================================================================================= TESTING: checkDependencyGenerationFlag from config.compilers(config/BuildSystem/config/compilers.py:1367) Check if -MMD works for dependency generation, and add it if it does Trying C compiler flag -MMD -MP Defined make macro "C_DEPFLAGS" to "-MMD -MP" Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -MMD -MP /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Trying Cxx compiler flag -MMD -MP Defined make macro "CXX_DEPFLAGS" to "-MMD -MP" Executing: clang++ -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -MMD -MP /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: clang++ --help | head -n 20 stdout: OVERVIEW: clang LLVM compiler USAGE: clang [options] file... OPTIONS: -### Print (but do not run) the commands to run for this compilation --analyzer-output Static analyzer report output format (html|plist|plist-multi-file|plist-html|sarif|text). --analyze Run the static analyzer -arcmt-migrate-emit-errors Emit ARC errors even if the migrator can fix them -arcmt-migrate-report-output Output path for the plist report -B Add to search path for binaries and object files used implicitly -CC Include comments from within macros in preprocessed output -cl-denorms-are-zero OpenCL only. Allow denormals to be flushed to zero. -cl-fast-relaxed-math OpenCL only. Sets -cl-finite-math-only and -cl-unsafe-math-optimizations, and defines __FAST_RELAXED_MATH__. -cl-finite-math-only OpenCL only. Allow floating-point optimizations that assume arguments and results are not NaNs or +-Inf. -cl-fp32-correctly-rounded-divide-sqrt OpenCL only. Specify that single precision floating-point divide and sqrt used in the program source are correctly rounded. ============================================================================================= TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:156) Check for the C/CXX restrict keyword Executing: clang -V ===== Checking compiler Executing: clang++ -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.cc Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.cc:5:20: warning: unused variable 'x' [-Wunused-variable] float * __restrict x;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set Cxx restrict keyword to __restrict Defined "CXX_RESTRICT" to "__restrict" ============================================================================================= TESTING: checkCxxDialect from config.compilers(config/BuildSystem/config/compilers.py:469) Determine the Cxx dialect supported by the compiler [and correspoding compiler option - if any]. -with-cxx-dialect can take options: auto: use highest dialect configure can determine cxx17: [future?] cxx14: gnu++14 or c++14 cxx11: gnu++11 or c++11 0: disable CxxDialect check and use compiler default checkCxxDialect: checking CXX14 with flag: Executing: clang++ -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc Possible ERROR while running compiler: exit code 1 stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc:7:32: error: unknown type name 'constexpr' template constexpr T Cubed( T x ) { return x*x*x; } ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc:7:42: warning: variable templates are a C++14 extension [-Wc++14-extensions] template constexpr T Cubed( T x ) { return x*x*x; } ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc:7:43: error: expected ';' at end of declaration template constexpr T Cubed( T x ) { return x*x*x; } ^ ; /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc:7:51: error: unknown type name 'T' template constexpr T Cubed( T x ) { return x*x*x; } ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc:7:44: error: C++ requires a type specifier for all declarations template constexpr T Cubed( T x ) { return x*x*x; } ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc:18:11: error: unknown type name 'constexpr' constexpr std::complex I(0.0,1.0); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc:18:26: error: template specialization requires 'template<>' constexpr std::complex I(0.0,1.0); ^ ~~~~~~~~ template<> /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc:18:26: error: no variable template matches specialization /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc:18:41: error: expected ';' at end of declaration constexpr std::complex I(0.0,1.0); ^ ; /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc:19:11: warning: 'auto' type specifier is a C++11 extension [-Wc++11-extensions] auto lambda = [](auto x, auto y) {return x + y;}; ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc:19:25: error: expected expression auto lambda = [](auto x, auto y) {return x + y;}; ^ 2 warnings and 9 errors generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include template constexpr T Cubed( T x ) { return x*x*x; } int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); std::cout << x; constexpr std::complex I(0.0,1.0); auto lambda = [](auto x, auto y) {return x + y;}; return lambda(3,4); ; return 0; } Rejecting compiler flag due to nonzero status from link Rejecting compiler flag due to /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc:7:32: error: unknown type name 'constexpr' template constexpr T Cubed( T x ) { return x*x*x; } ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc:7:42: warning: variable templates are a C++14 extension [-Wc++14-extensions] template constexpr T Cubed( T x ) { return x*x*x; } ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc:7:43: error: expected ';' at end of declaration template constexpr T Cubed( T x ) { return x*x*x; } ^ ; /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc:7:51: error: unknown type name 'T' template constexpr T Cubed( T x ) { return x*x*x; } ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc:7:44: error: C++ requires a type specifier for all declarations template constexpr T Cubed( T x ) { return x*x*x; } ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc:18:11: error: unknown type name 'constexpr' constexpr std::complex I(0.0,1.0); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc:18:26: error: template specialization requires 'template<>' constexpr std::complex I(0.0,1.0); ^ ~~~~~~~~ template<> /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc:18:26: error: no variable template matches specialization /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc:18:41: error: expected ';' at end of declaration constexpr std::complex I(0.0,1.0); ^ ; /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc:19:11: warning: 'auto' type specifier is a C++11 extension [-Wc++11-extensions] auto lambda = [](auto x, auto y) {return x + y;}; ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc:19:25: error: expected expression auto lambda = [](auto x, auto y) {return x + y;}; ^ 2 warnings and 9 errors generated. PETSc Error: No output file produced checkCxxDialect: checking CXX14 with flag: -std=c++14 Defined "HAVE_CXX_DIALECT_CXX14" to "1" Defined "HAVE_CXX_DIALECT_CXX11" to "1" Executing: clang++ -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -std=c++14 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc:18:42: warning: unused variable 'I' [-Wunused-variable] constexpr std::complex I(0.0,1.0); ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include template constexpr T Cubed( T x ) { return x*x*x; } int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); std::cout << x; constexpr std::complex I(0.0,1.0); auto lambda = [](auto x, auto y) {return x + y;}; return lambda(3,4); ; return 0; } ============================================================================================= TESTING: checkCxxOptionalExtensions from config.compilers(config/BuildSystem/config/compilers.py:441) Check whether the C++ compiler (IBM xlC, OSF5) need special flag for .c files which contain C++ Executing: clang++ -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -std=c++14 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: clang: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated [-Wdeprecated] /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c:5:22: warning: private field 'i' is not used [-Wunused-private-field] class somename { int i; };; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } ============================================================================================= TESTING: checkCxxInline from config.compilers(config/BuildSystem/config/compilers.py:141) Check for C++ inline keyword ===== Checking compiler Executing: clang++ -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -std=c++14 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set Cxx Inline keyword to inline Defined "CXX_INLINE" to "inline" ============================================================================================= TESTING: checkCxxLibraries from config.compilers(config/BuildSystem/config/compilers.py:553) Determines the libraries needed to link with C++ from C and Fortran ===== Checking compiler Executing: clang++ -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -std=c++14 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/confc.o -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "std::__1::locale::use_facet(std::__1::locale::id&) const", referenced from: std::__1::ctype const& std::__1::use_facet >(std::__1::locale const&) in confc.o "std::__1::ios_base::getloc() const", referenced from: std::__1::basic_ios >::widen(char) const in confc.o "std::__1::basic_string, std::__1::allocator >::__init(unsigned long, char)", referenced from: std::__1::basic_string, std::__1::allocator >::basic_string(unsigned long, char) in confc.o "std::__1::basic_string, std::__1::allocator >::~basic_string()", referenced from: std::__1::ostreambuf_iterator > std::__1::__pad_and_output >(std::__1::ostreambuf_iterator >, char const*, char const*, char const*, std::__1::ios_base&, char) in confc.o "std::__1::basic_ostream >::sentry::sentry(std::__1::basic_ostream >&)", referenced from: std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "std::__1::basic_ostream >::sentry::~sentry()", referenced from: std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "std::__1::cout", referenced from: asub() in confc.o "std::__1::ctype::id", referenced from: std::__1::ctype const& std::__1::use_facet >(std::__1::locale const&) in confc.o "std::__1::locale::~locale()", referenced from: std::__1::basic_ios >::widen(char) const in confc.o "std::__1::ios_base::__set_badbit_and_consider_rethrow()", referenced from: std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "std::__1::ios_base::clear(unsigned int)", referenced from: std::__1::ios_base::setstate(unsigned int) in confc.o "std::terminate()", referenced from: ___clang_call_terminate in confc.o "typeinfo for int", referenced from: asub() in confc.o GCC_except_table0 in confc.o "operator delete(void*)", referenced from: std::__1::_DeallocateCaller::__do_call(void*) in confc.o "___cxa_allocate_exception", referenced from: asub() in confc.o "___cxa_begin_catch", referenced from: asub() in confc.o ___clang_call_terminate in confc.o std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "___cxa_end_catch", referenced from: asub() in confc.o std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "___cxa_throw", referenced from: asub() in confc.o "___gxx_personality_v0", referenced from: asub() in confc.o std::__1::__vector_base >::__vector_base() in confc.o std::__1::__vector_base >::__destruct_at_end(int*) in confc.o std::__1::allocator::deallocate(int*, unsigned long) in confc.o std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o std::__1::ostreambuf_iterator > std::__1::__pad_and_output >(std::__1::ostreambuf_iterator >, char const*, char const*, char const*, std::__1::ios_base&, char) in confc.o std::__1::ostreambuf_iterator >::ostreambuf_iterator(std::__1::basic_ostream >&) in confc.o ... ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS Executing: clang --help | head -n 500 Detected CLANG compiler ===== Checking compiler Executing: clang++ -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -std=c++14 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/confc.o -lc++ -ldl compilers: C++ requires -lc++ to link with C compiler ===== Checking compiler Executing: clang++ -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -std=c++14 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} ===== Checking linker Executing: gfortran -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.F90 Successful compile: Source: program main print*,'testing' stop end Executing: gfortran -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/confc.o -lc++ -ldl Possible ERROR while running linker: stderr: ld: warning: object file (/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/confc.o) was built for newer macOS version (11.0) than being linked (10.16) C++ libraries are not needed when using FC linker Executing: clang++ -V ============================================================================================= TESTING: checkFortranNameMangling from config.compilers(config/BuildSystem/config/compilers.py:860) Checks Fortran name mangling, and defines HAVE_FORTRAN_UNDERSCORE, HAVE_FORTRAN_NOUNDERSCORE, HAVE_FORTRAN_CAPS Testing Fortran mangling type underscore with code void d1chk_(void){return;} ===== Checking compiler Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1chk_(void){return;} ===== Checking linker Executing: gfortran -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.F90 Successful compile: Source: program main call d1chk() end Executing: gfortran -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/confc.o -lc++ -ldl Possible ERROR while running linker: stderr: ld: warning: object file (/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/confc.o) was built for newer macOS version (11.0) than being linked (10.16) compilers: Fortran name mangling is underscore Defined "HAVE_FORTRAN_UNDERSCORE" to "1" Executing: gfortran --version stdout: GNU Fortran (GCC) 10.2.0 Copyright (C) 2020 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Detected GFortran8plus compiler Defined "FORTRAN_CHARLEN_T" to "size_t" ============================================================================================= TESTING: checkFortranNameManglingDouble from config.compilers(config/BuildSystem/config/compilers.py:898) Checks if symbols containing an underscore append an extra underscore, and defines HAVE_FORTRAN_UNDERSCORE_UNDERSCORE if necessary ===== Checking compiler Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1_chk__(void){return;} ===== Checking linker Executing: gfortran -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.F90 Successful compile: Source: program main call d1_chk() end Executing: gfortran -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/confc.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: ld: warning: object file (/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/confc.o) was built for newer macOS version (11.0) than being linked (10.16) Undefined symbols for architecture x86_64: "_d1_chk_", referenced from: _MAIN__ in conftest.o (maybe you meant: _d1_chk__) ld: symbol(s) not found for architecture x86_64 collect2: error: ld returned 1 exit status ============================================================================================= TESTING: checkFortranLibraries from config.compilers(config/BuildSystem/config/compilers.py:908) Substitutes for FLIBS the libraries needed to link with Fortran This macro is intended to be used in those situations when it is necessary to mix, e.g. C++ and Fortran 77, source code into a single program or shared library. For example, if object files from a C++ and Fortran 77 compiler must be linked together, then the C++ compiler/linker must be used for linking (since special C++-ish things need to happen at link time like calling global constructors, instantiating templates, enabling exception support, etc.). However, the Fortran 77 intrinsic and run-time libraries must be linked in as well, but the C++ compiler/linker does not know how to add these Fortran 77 libraries. This code was translated from the autoconf macro which was packaged in its current form by Matthew D. Langston . However, nearly all of this macro came from the OCTAVE_FLIBS macro in octave-2.0.13/aclocal.m4, and full credit should go to John W. Eaton for writing this extremely useful macro. ===== Checking linker Executing: gfortran -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.F90 Possible ERROR while running compiler: exit code 1 stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.F90:3:2: 3 | call MPI_Allreduce() | 1 ~~~ Fatal Error: mpif.h: No such file or directory compilation terminated. Source: program main #include call MPI_Allreduce() end Compile failed inside link ===== Checking compiler Executing: gfortran -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.F90 Successful compile: Source: subroutine asub() print*,'testing' return end ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern void asub_(void); int main(int argc,char **args) { asub_(); return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/confc.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__gfortran_st_write", referenced from: _asub_ in confc.o "__gfortran_st_write_done", referenced from: _asub_ in confc.o "__gfortran_transfer_character_write", referenced from: _asub_ in confc.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Fortran code cannot directly be linked with C linker, therefore will determine needed Fortran libraries Executing: gfortran -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.F90 Successful compile: Source: program main end Executing: gfortran -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest -v -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o -lc++ -ldl Possible ERROR while running linker: stderr: Driving: gfortran -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest -v -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o -lc++ -ldl -mmacosx-version-min=10.16.0 -asm_macosx_version_min=10.16 -l gfortran -shared-libgcc Using built-in specs. COLLECT_GCC=gfortran COLLECT_LTO_WRAPPER=/usr/local/gfortran/libexec/gcc/x86_64-apple-darwin19/10.2.0/lto-wrapper Target: x86_64-apple-darwin19 Configured with: ../gcc-10.2.0/configure --prefix=/usr/local/gfortran --with-gmp=/Users/fx/devel/gcc/build_package/deps --with-isl=/Users/fx/devel/gcc/build_package/deps --enable-languages=c,c++,fortran,objc,obj-c++ --build=x86_64-apple-darwin19 --with-native-system-header-dir=/usr/include --with-sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk Thread model: posix Supported LTO compression algorithms: zlib gcc version 10.2.0 (GCC) Reading specs from /usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0/../../../libgfortran.spec rename spec lib to liborig COLLECT_GCC_OPTIONS='-o' '/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest' '-v' '-Wall' '-ffree-line-length-0' '-Wno-unused-dummy-argument' '-g' '-mmacosx-version-min=10.16.0' '-asm_macosx_version_min=10.16' '-shared-libgcc' '-mtune=core2' COMPILER_PATH=/usr/local/gfortran/libexec/gcc/x86_64-apple-darwin19/10.2.0/:/usr/local/gfortran/libexec/gcc/x86_64-apple-darwin19/10.2.0/:/usr/local/gfortran/libexec/gcc/x86_64-apple-darwin19/:/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0/:/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/ LIBRARY_PATH=/usr/local/lib/:/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0/:/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0/../../../ COLLECT_GCC_OPTIONS='-o' '/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest' '-v' '-Wall' '-ffree-line-length-0' '-Wno-unused-dummy-argument' '-g' '-mmacosx-version-min=10.16.0' '-asm_macosx_version_min=10.16' '-shared-libgcc' '-mtune=core2' /usr/local/gfortran/libexec/gcc/x86_64-apple-darwin19/10.2.0/collect2 -syslibroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/ -dynamic -arch x86_64 -macosx_version_min 10.16.0 -weak_reference_mismatches non-weak -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest -L/usr/local/lib -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0/../../.. -bind_at_load -multiply_defined suppress -multiply_defined suppress -commons use_dylibs -search_paths_first -no_compact_unwind /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o -lc++ -lgfortran -lSystem -lgcc_ext.10.5 -lgcc -lquadmath -lm -lgcc_ext.10.5 -lgcc -lSystem -no_compact_unwind -v -idsym collect2 version 10.2.0 /usr/bin/ld -syslibroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/ -dynamic -arch x86_64 -macosx_version_min 10.16.0 -weak_reference_mismatches non-weak -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest -L/usr/local/lib -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0/../../.. -bind_at_load -multiply_defined suppress -multiply_defined suppress -commons use_dylibs -search_paths_first -no_compact_unwind /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o -lc++ -lgfortran -lSystem -lgcc_ext.10.5 -lgcc -lquadmath -lm -lgcc_ext.10.5 -lgcc -lSystem -no_compact_unwind -v @(#)PROGRAM:ld PROJECT:ld64-609.8 BUILD 20:09:52 Nov 4 2020 configured to support archs: armv6 armv7 armv7s arm64 arm64e arm64_32 i386 x86_64 x86_64h armv6m armv7k armv7m armv7em Library search paths: /usr/local/lib /usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 /usr/local/gfortran/lib /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Framework search paths: /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/ compilers: Checking arg Driving: compilers: Unknown arg Driving: compilers: Checking arg gfortran compilers: Unknown arg gfortran compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest compilers: Unknown arg /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg -Wl,-bind_at_load compilers: Unknown arg -Wl,-bind_at_load compilers: Checking arg -Wl,-multiply_defined,suppress compilers: Unknown arg -Wl,-multiply_defined,suppress compilers: Checking arg -Wl,-multiply_defined compilers: Unknown arg -Wl,-multiply_defined compilers: Checking arg -Wl,suppress compilers: Unknown arg -Wl,suppress compilers: Checking arg -Wl,-commons,use_dylibs compilers: Unknown arg -Wl,-commons,use_dylibs compilers: Checking arg -Wl,-search_paths_first compilers: Unknown arg -Wl,-search_paths_first compilers: Checking arg -Wl,-no_compact_unwind compilers: Unknown arg -Wl,-no_compact_unwind compilers: Checking arg -Wall compilers: Unknown arg -Wall compilers: Checking arg -ffree-line-length-0 compilers: Unknown arg -ffree-line-length-0 compilers: Checking arg -Wno-unused-dummy-argument compilers: Unknown arg -Wno-unused-dummy-argument compilers: Checking arg -g compilers: Unknown arg -g compilers: Checking arg /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o compilers: Unknown arg /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o compilers: Checking arg -lc++ compilers: Found library: -lc++ compilers: Checking arg -ldl compilers: Found library: -ldl compilers: Checking arg -mmacosx-version-min=10.16.0 compilers: Unknown arg -mmacosx-version-min=10.16.0 compilers: Checking arg -asm_macosx_version_min=10.16 compilers: Unknown arg -asm_macosx_version_min=10.16 compilers: Checking arg -l compilers: Found canonical library: -lgfortran compilers: Checking arg -shared-libgcc compilers: Unknown arg -shared-libgcc compilers: Checking arg Using compilers: Unknown arg Using compilers: Checking arg built-in compilers: Unknown arg built-in compilers: Checking arg specs. compilers: Unknown arg specs. compilers: Checking arg COLLECT_GCC=gfortran compilers: Unknown arg COLLECT_GCC=gfortran compilers: Checking arg COLLECT_LTO_WRAPPER=/usr/local/gfortran/libexec/gcc/x86_64-apple-darwin19/10.2.0/lto-wrapper compilers: Unknown arg COLLECT_LTO_WRAPPER=/usr/local/gfortran/libexec/gcc/x86_64-apple-darwin19/10.2.0/lto-wrapper compilers: Checking arg Target: compilers: Unknown arg Target: compilers: Checking arg x86_64-apple-darwin19 compilers: Unknown arg x86_64-apple-darwin19 compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg ../gcc-10.2.0/configure compilers: Unknown arg ../gcc-10.2.0/configure compilers: Checking arg --prefix=/usr/local/gfortran compilers: Unknown arg --prefix=/usr/local/gfortran compilers: Checking arg --with-gmp=/Users/fx/devel/gcc/build_package/deps compilers: Unknown arg --with-gmp=/Users/fx/devel/gcc/build_package/deps compilers: Checking arg --with-isl=/Users/fx/devel/gcc/build_package/deps compilers: Unknown arg --with-isl=/Users/fx/devel/gcc/build_package/deps compilers: Checking arg --enable-languages=c,c++,fortran,objc,obj-c++ compilers: Unknown arg --enable-languages=c,c++,fortran,objc,obj-c++ compilers: Checking arg --build=x86_64-apple-darwin19 compilers: Unknown arg --build=x86_64-apple-darwin19 compilers: Checking arg --with-native-system-header-dir=/usr/include compilers: Unknown arg --with-native-system-header-dir=/usr/include compilers: Checking arg --with-sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk compilers: Unknown arg --with-sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg Supported compilers: Unknown arg Supported compilers: Checking arg LTO compilers: Unknown arg LTO compilers: Checking arg compression compilers: Unknown arg compression compilers: Checking arg algorithms: compilers: Unknown arg algorithms: compilers: Checking arg zlib compilers: Unknown arg zlib compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 10.2.0 compilers: Unknown arg 10.2.0 compilers: Checking arg (GCC) compilers: Unknown arg (GCC) compilers: Checking arg Reading compilers: Unknown arg Reading compilers: Checking arg specs compilers: Unknown arg specs compilers: Checking arg from compilers: Unknown arg from compilers: Checking arg /usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0/../../../libgfortran.spec compilers: Unknown arg /usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0/../../../libgfortran.spec compilers: Checking arg rename compilers: Unknown arg rename compilers: Checking arg spec compilers: Unknown arg spec compilers: Checking arg lib compilers: Unknown arg lib compilers: Checking arg to compilers: Unknown arg to compilers: Checking arg liborig compilers: Unknown arg liborig compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg COMPILER_PATH=/usr/local/gfortran/libexec/gcc/x86_64-apple-darwin19/10.2.0/:/usr/local/gfortran/libexec/gcc/x86_64-apple-darwin19/10.2.0/:/usr/local/gfortran/libexec/gcc/x86_64-apple-darwin19/:/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0/:/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/ compilers: Skipping arg COMPILER_PATH=/usr/local/gfortran/libexec/gcc/x86_64-apple-darwin19/10.2.0/:/usr/local/gfortran/libexec/gcc/x86_64-apple-darwin19/10.2.0/:/usr/local/gfortran/libexec/gcc/x86_64-apple-darwin19/:/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0/:/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/ compilers: Checking arg LIBRARY_PATH=/usr/local/lib/:/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0/:/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0/../../../ compilers: Skipping arg LIBRARY_PATH=/usr/local/lib/:/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0/:/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0/../../../ compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg /usr/local/gfortran/libexec/gcc/x86_64-apple-darwin19/10.2.0/collect2 compilers: Unknown arg /usr/local/gfortran/libexec/gcc/x86_64-apple-darwin19/10.2.0/collect2 compilers: Checking arg -syslibroot compilers: Unknown arg -syslibroot compilers: Checking arg /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/ compilers: Unknown arg /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/ compilers: Checking arg -dynamic compilers: Unknown arg -dynamic compilers: Checking arg -arch compilers: Unknown arg -arch compilers: Checking arg x86_64 compilers: Unknown arg x86_64 compilers: Checking arg -macosx_version_min compilers: Unknown arg -macosx_version_min compilers: Checking arg 10.16.0 compilers: Unknown arg 10.16.0 compilers: Checking arg -weak_reference_mismatches compilers: Unknown arg -weak_reference_mismatches compilers: Checking arg non-weak compilers: Unknown arg non-weak compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest compilers: Unknown arg /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest compilers: Checking arg -L/usr/local/lib compilers: Found library directory: -L/usr/local/lib compilers: Checking arg -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 compilers: Found library directory: -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 compilers: Checking arg -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0/../../.. compilers: Found library directory: -L/usr/local/gfortran/lib compilers: Checking arg -bind_at_load compilers: Unknown arg -bind_at_load compilers: Checking arg -multiply_defined compilers: Unknown arg -multiply_defined compilers: Checking arg suppress compilers: Unknown arg suppress compilers: Checking arg -multiply_defined compilers: Unknown arg -multiply_defined compilers: Checking arg suppress compilers: Unknown arg suppress compilers: Checking arg -commons compilers: Unknown arg -commons compilers: Checking arg use_dylibs compilers: Unknown arg use_dylibs compilers: Checking arg -search_paths_first compilers: Unknown arg -search_paths_first compilers: Checking arg -no_compact_unwind compilers: Unknown arg -no_compact_unwind compilers: Checking arg /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o compilers: Unknown arg /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o compilers: Checking arg -lc++ compilers: Already in lflags: -lc++ compilers: Checking arg -lgfortran compilers: Found library: -lgfortran compilers: Checking arg -lSystem compilers: Found system library therefore skipping: -lSystem compilers: Checking arg -lgcc_ext.10.5 compilers: Found system library therefore skipping: -lgcc_ext.10.5 compilers: Checking arg -lgcc compilers: Found system library therefore skipping: -lgcc compilers: Checking arg -lquadmath compilers: Found library: -lquadmath compilers: Checking arg -lm compilers: Found library: -lm compilers: Checking arg -lgcc_ext.10.5 compilers: Found system library therefore skipping: -lgcc_ext.10.5 compilers: Checking arg -lgcc compilers: Found system library therefore skipping: -lgcc compilers: Checking arg -lSystem compilers: Found system library therefore skipping: -lSystem compilers: Checking arg -no_compact_unwind compilers: Unknown arg -no_compact_unwind compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg -idsym compilers: Unknown arg -idsym compilers: Checking arg collect2 compilers: Unknown arg collect2 compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 10.2.0 compilers: Unknown arg 10.2.0 compilers: Checking arg /usr/bin/ld compilers: Unknown arg /usr/bin/ld compilers: Checking arg -syslibroot compilers: Unknown arg -syslibroot compilers: Checking arg /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/ compilers: Unknown arg /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/ compilers: Checking arg -dynamic compilers: Unknown arg -dynamic compilers: Checking arg -arch compilers: Unknown arg -arch compilers: Checking arg x86_64 compilers: Unknown arg x86_64 compilers: Checking arg -macosx_version_min compilers: Unknown arg -macosx_version_min compilers: Checking arg 10.16.0 compilers: Unknown arg 10.16.0 compilers: Checking arg -weak_reference_mismatches compilers: Unknown arg -weak_reference_mismatches compilers: Checking arg non-weak compilers: Unknown arg non-weak compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest compilers: Unknown arg /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest compilers: Checking arg -L/usr/local/lib compilers: Already in lflags so skipping: -L/usr/local/lib compilers: Checking arg -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 compilers: Already in lflags so skipping: -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 compilers: Checking arg -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0/../../.. compilers: Already in lflags so skipping: -L/usr/local/gfortran/lib compilers: Checking arg -bind_at_load compilers: Unknown arg -bind_at_load compilers: Checking arg -multiply_defined compilers: Unknown arg -multiply_defined compilers: Checking arg suppress compilers: Unknown arg suppress compilers: Checking arg -multiply_defined compilers: Unknown arg -multiply_defined compilers: Checking arg suppress compilers: Unknown arg suppress compilers: Checking arg -commons compilers: Unknown arg -commons compilers: Checking arg use_dylibs compilers: Unknown arg use_dylibs compilers: Checking arg -search_paths_first compilers: Unknown arg -search_paths_first compilers: Checking arg -no_compact_unwind compilers: Unknown arg -no_compact_unwind compilers: Checking arg /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o compilers: Unknown arg /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o compilers: Checking arg -lc++ compilers: Already in lflags: -lc++ compilers: Checking arg -lgfortran compilers: Already in lflags: -lgfortran compilers: Checking arg -lSystem compilers: Found system library therefore skipping: -lSystem compilers: Checking arg -lgcc_ext.10.5 compilers: Found system library therefore skipping: -lgcc_ext.10.5 compilers: Checking arg -lgcc compilers: Found system library therefore skipping: -lgcc compilers: Checking arg -lquadmath compilers: Already in lflags: -lquadmath compilers: Checking arg -lm compilers: Already in lflags: -lm compilers: Checking arg -lgcc_ext.10.5 compilers: Found system library therefore skipping: -lgcc_ext.10.5 compilers: Checking arg -lgcc compilers: Found system library therefore skipping: -lgcc compilers: Checking arg -lSystem compilers: Found system library therefore skipping: -lSystem compilers: Checking arg -no_compact_unwind compilers: Unknown arg -no_compact_unwind compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg @(#)PROGRAM:ld compilers: Unknown arg @(#)PROGRAM:ld compilers: Checking arg PROJECT:ld64-609.8 compilers: Unknown arg PROJECT:ld64-609.8 compilers: Checking arg BUILD compilers: Unknown arg BUILD compilers: Checking arg 20:09:52 compilers: Unknown arg 20:09:52 compilers: Checking arg Nov compilers: Unknown arg Nov compilers: Checking arg 4 compilers: Unknown arg 4 compilers: Checking arg 2020 compilers: Unknown arg 2020 compilers: Checking arg configured compilers: Unknown arg configured compilers: Checking arg to compilers: Unknown arg to compilers: Checking arg support compilers: Unknown arg support compilers: Checking arg archs: compilers: Unknown arg archs: compilers: Checking arg armv6 compilers: Unknown arg armv6 compilers: Checking arg armv7 compilers: Unknown arg armv7 compilers: Checking arg armv7s compilers: Unknown arg armv7s compilers: Checking arg arm64 compilers: Unknown arg arm64 compilers: Checking arg arm64e compilers: Unknown arg arm64e compilers: Checking arg arm64_32 compilers: Unknown arg arm64_32 compilers: Checking arg i386 compilers: Unknown arg i386 compilers: Checking arg x86_64 compilers: Unknown arg x86_64 compilers: Checking arg x86_64h compilers: Unknown arg x86_64h compilers: Checking arg armv6m compilers: Unknown arg armv6m compilers: Checking arg armv7k compilers: Unknown arg armv7k compilers: Checking arg armv7m compilers: Unknown arg armv7m compilers: Checking arg armv7em compilers: Unknown arg armv7em compilers: Checking arg Library compilers: Unknown arg Library compilers: Checking arg search compilers: Unknown arg search compilers: Checking arg paths: compilers: Unknown arg paths: compilers: Checking arg /usr/local/lib compilers: Unknown arg /usr/local/lib compilers: Checking arg /usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 compilers: Unknown arg /usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 compilers: Checking arg /usr/local/gfortran/lib compilers: Unknown arg /usr/local/gfortran/lib compilers: Checking arg /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib compilers: Unknown arg /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib compilers: Checking arg Framework compilers: Unknown arg Framework compilers: Checking arg search compilers: Unknown arg search compilers: Checking arg paths: compilers: Unknown arg paths: compilers: Checking arg /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/ compilers: Unknown arg /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/ compilers: Libraries needed to link Fortran code with the C linker: ['-lc++', '-ldl', '-lgfortran', '-Wl,-rpath,/usr/local/lib', '-L/usr/local/lib', '-Wl,-rpath,/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0', '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0', '-Wl,-rpath,/usr/local/gfortran/lib', '-L/usr/local/gfortran/lib', '-lgfortran', '-lquadmath', '-lm'] compilers: Libraries needed to link Fortran main with the C linker: [] compilers: Check that Fortran libraries can be used with C as the linker ===== Checking compiler Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -lc++ -ldl -lgfortran -Wl,-rpath,/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -Wl,-rpath,/usr/local/gfortran/lib -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -lc++ -ldl ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -lc++ -ldl -lgfortran -Wl,-rpath,/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -Wl,-rpath,/usr/local/gfortran/lib -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -lc++ -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lpetsc-ufod4vtr9mqHvKIQiVAm clang: error: linker command failed with exit code 1 (use -v to see invocation) ======== Checking running linked program ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -lc++ -ldl -lgfortran -Wl,-rpath,/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -Wl,-rpath,/usr/local/gfortran/lib -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -lc++ -ldl Testing executable /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest to see if it can be run Executing: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest compilers: Check that Fortran libraries can be used with C++ as linker compilers: Fortran libraries can be used from C++ ===== Checking compiler Executing: clang++ -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -std=c++14 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ===== Checking linker Executing: clang++ -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -std=c++14 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: clang++ -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -lc++ -ldl -lgfortran -Wl,-rpath,/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -Wl,-rpath,/usr/local/gfortran/lib -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -lc++ -ldl ===== Checking linker Executing: clang++ -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -std=c++14 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: clang++ -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -lc++ -ldl -lgfortran -Wl,-rpath,/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -Wl,-rpath,/usr/local/gfortran/lib -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -lc++ -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lpetsc-ufod4vtr9mqHvKIQiVAm clang: error: linker command failed with exit code 1 (use -v to see invocation) ======== Checking running linked program ===== Checking linker Executing: clang++ -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -std=c++14 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: clang++ -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -lc++ -ldl -lgfortran -Wl,-rpath,/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -Wl,-rpath,/usr/local/gfortran/lib -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -lc++ -ldl Testing executable /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest to see if it can be run Executing: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest ============================================================================================= TESTING: checkFortranLinkingCxx from config.compilers(config/BuildSystem/config/compilers.py:1332) Check that Fortran can link C++ libraries ===== Checking compiler Executing: clang++ -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -std=c++14 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void foo(void){d1chk_();} ===== Checking compiler Executing: clang++ -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -std=c++14 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void d1chk_(void){return;} ===== Checking linker Executing: gfortran -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.F90 Successful compile: Source: program main call d1chk() end Executing: gfortran -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/cxxobj.o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/confc.o -lc++ -ldl Possible ERROR while running linker: stderr: ld: warning: object file (/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/cxxobj.o) was built for newer macOS version (11.0) than being linked (10.16) ld: warning: object file (/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/confc.o) was built for newer macOS version (11.0) than being linked (10.16) compilers: Fortran can link C++ functions ============================================================================================= TESTING: setupFrameworkCompilers from config.compilers(config/BuildSystem/config/compilers.py:1487) child config.compilers 6.082542 ============================================================================================= TESTING: configureClosure from config.utilities.closure(config/BuildSystem/config/utilities/closure.py:17) Determine if Apple ^close syntax is supported in C ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure/conftest.c:6:7: warning: unused variable 'closure' [-Wunused-variable] int (^closure)(int);; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int (^closure)(int);; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure/conftest.o -lc++ -ldl Defined "HAVE_CLOSURE" to "1" child config.utilities.closure 0.151931 ============================================================================================= TESTING: checkFortranTypeSizes from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:56) Check whether real*8 is supported and suggest flags which will allow support Executing: gfortran -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran/conftest.F90:2:21: 2 | real*8 variable | 1 Warning: Unused variable ‘variable’ declared at (1) [-Wunused-variable] Source: program main real*8 variable end ============================================================================================= TESTING: checkFortranPreprocessor from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:73) Determine if Fortran handles preprocessing properly Executing: gfortran -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.F90 Successful compile: Source: program main #define dummy dummy #ifndef dummy fooey #endif end compilers: Fortran uses preprocessor ============================================================================================= TESTING: checkFortranDefineCompilerOption from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:96) Check if -WF,-Dfoobar or -Dfoobar is the compiler option to define a macro Executing: gfortran -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -DTesting /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.F90 Successful compile: Source: program main #define dummy dummy #ifndef Testing fooey #endif end Defined make macro "FC_DEFINE_FLAG" to "-D" compilers: Fortran uses -D for defining macro ============================================================================================= TESTING: checkFortran90 from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:146) Determine whether the Fortran compiler handles F90 ===== Checking linker Executing: gfortran -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran/conftest.F90:3:43: 3 | REAL(KIND=SELECTED_REAL_KIND(10)) d | 1 Warning: Unused variable ‘d’ declared at (1) [-Wunused-variable] Source: program main REAL(KIND=SELECTED_REAL_KIND(10)) d INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8) INTEGER (KIND=int) :: ierr ierr = 1 end Executing: gfortran -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran/conftest.o -lc++ -ldl Fortran compiler supports F90 ============================================================================================= TESTING: checkFortran90FreeForm from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:162) Determine whether the Fortran compiler handles F90FreeForm We also require that the compiler handles lines longer than 132 characters ===== Checking linker Executing: gfortran -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran/conftest.F90 Successful compile: Source: program main INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8); INTEGER (KIND=int) :: ierr; ierr = 1 end Executing: gfortran -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran/conftest.o -lc++ -ldl Defined "USING_F90FREEFORM" to "1" Fortran compiler supports F90FreeForm ============================================================================================= TESTING: checkFortran2003 from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:176) Determine whether the Fortran compiler handles F2003 ===== Checking linker Executing: gfortran -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran/conftest.F90:21:0: 21 | CArray = (/(c_loc(list1(i)),i=1,5),c_loc(nullc)/) | Warning: ‘carray.data’ may be used uninitialized in this function [-Wmaybe-uninitialized] /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran/conftest.F90:21:0: Warning: ‘carray.offset’ may be used uninitialized in this function [-Wmaybe-uninitialized] /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran/conftest.F90:21:0: Warning: ‘carray.dim[0].lbound’ may be used uninitialized in this function [-Wmaybe-uninitialized] /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran/conftest.F90:21:0: Warning: ‘carray.dim[0].ubound’ may be used uninitialized in this function [-Wmaybe-uninitialized] /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran/conftest.F90:21:0: 21 | CArray = (/(c_loc(list1(i)),i=1,5),c_loc(nullc)/) | Warning: ‘carray.dim[0].stride’ may be used uninitialized in this function [-Wmaybe-uninitialized] Source: module Base_module type, public :: base_type integer :: A contains procedure, public :: Print => BasePrint end type base_type contains subroutine BasePrint(this) class(base_type) :: this end subroutine BasePrint end module Base_module program main use,intrinsic :: iso_c_binding Type(C_Ptr),Dimension(:),Pointer :: CArray character(kind=c_char),pointer :: nullc => null() character(kind=c_char,len=5),dimension(:),pointer::list1 allocate(list1(5)) CArray = (/(c_loc(list1(i)),i=1,5),c_loc(nullc)/) end Executing: gfortran -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran/conftest.o -lc++ -ldl Defined "USING_F2003" to "1" Fortran compiler supports F2003 ============================================================================================= TESTING: checkFortran90Array from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:211) Check for F90 array interfaces Executing: uname -s stdout: Darwin ===== Checking compiler Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void f90arraytest_(void* a1, void* a2,void* a3, void* i) { printf("arrays [%p %p %p]\n",a1,a2,a3); fflush(stdout); return; } void f90ptrtest_(void* a1, void* a2,void* a3, void* i, void* p1 ,void* p2, void* p3) { printf("arrays [%p %p %p]\n",a1,a2,a3); if ((p1 == p3) && (p1 != p2)) { printf("pointers match! [%p %p] [%p]\n",p1,p3,p2); fflush(stdout); } else { printf("pointers do not match! [%p %p] [%p]\n",p1,p3,p2); fflush(stdout); exit(111); } return; } ======== Checking running linked program ===== Checking linker Executing: gfortran -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran/conftest.F90 Successful compile: Source: program main Interface Subroutine f90ptrtest(p1,p2,p3,i) integer, pointer :: p1(:,:) integer, pointer :: p2(:,:) integer, pointer :: p3(:,:) integer i End Subroutine End Interface integer, pointer :: ptr1(:,:),ptr2(:,:) integer, target :: array(6:8,9:21) integer in in = 25 ptr1 => array ptr2 => array call f90arraytest(ptr1,ptr2,ptr1,in) call f90ptrtest(ptr1,ptr2,ptr1,in) end Executing: gfortran -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran/conftest.o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran/fooobj.o -lc++ -ldl Possible ERROR while running linker: stderr: ld: warning: object file (/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran/fooobj.o) was built for newer macOS version (11.0) than being linked (10.16) Testing executable /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran/conftest to see if it can be run Executing: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran/conftest stdout: arrays [0x7ffee4b77f70 0x7ffee4b77f70 0x7ffee4b77f70] arrays [0x7ffee4b77f10 0x7ffee4b77eb0 0x7ffee4b77f10] pointers do not match! [0x130a8 0x7ffee4b77f70] [0x7fff889d7018] ERROR while running executable: Could not execute "['/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran/conftest']": arrays [0x7ffee4b77f70 0x7ffee4b77f70 0x7ffee4b77f70] arrays [0x7ffee4b77f10 0x7ffee4b77eb0 0x7ffee4b77f10] pointers do not match! [0x130a8 0x7ffee4b77f70] [0x7fff889d7018] compilers: F90 uses a single argument for array pointers ============================================================================================= TESTING: checkFortran90AssumedType from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:298) Executing: gfortran -qversion ============================================================================================= TESTING: checkFortranModuleInclude from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:303) Figures out what flag is used to specify the include path for Fortran modules ===== Checking compiler Executing: gfortran -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran/conftest.F90 Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest ===== Checking linker Executing: gfortran -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran/confdir -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran/conftest.F90 Successful compile: Source: program main use configtest write(*,*) testint end Executing: gfortran -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran/confdir -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran/conftest.o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran/configtest.o -lc++ -ldl compilers: Fortran module include flag -I found ============================================================================================= TESTING: checkFortranModuleOutput from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:369) Figures out what flag is used to specify the include path for Fortran modules ===== Checking compiler Executing: gfortran -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -module /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran/confdir -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: exit code 1 stderr: gfortran: error: unrecognized command-line option ‘-module’ Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -module compile failed ===== Checking compiler Executing: gfortran -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -module:/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran/confdir -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: exit code 1 stderr: gfortran: error: unrecognized command-line option ‘-module:/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran/confdir’ Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -module: compile failed ===== Checking compiler Executing: gfortran -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -fmod=/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran/confdir -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: exit code 1 stderr: gfortran: error: unrecognized command-line option ‘-fmod=/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran/confdir’ Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -fmod= compile failed ===== Checking compiler Executing: gfortran -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -J/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran/confdir -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran/conftest.F90 Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -J found ============================================================================================= TESTING: checkFortranTypeStar from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:135) Determine whether the Fortran compiler handles type(*) ===== Checking compiler Executing: gfortran -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran/conftest.F90 Successful compile: Source: program main interface subroutine a(b) type(*) :: b(:) end subroutine end interface end Defined "HAVE_FORTRAN_TYPE_STAR" to "1" Fortran compiler supports type(*) ============================================================================================= TESTING: checkFortranTypeInitialize from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:125) Determines if PETSc objects in Fortran are initialized by default (doesn't work with common blocks) Defined "FORTRAN_TYPE_INITIALIZE" to " = -2" Initializing Fortran objects ============================================================================================= TESTING: configureFortranFlush from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:116) ===== Checking linker Executing: gfortran -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran/conftest.F90 Successful compile: Source: program main call flush(6) end Executing: gfortran -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran/conftest.o -lc++ -ldl Defined "HAVE_FORTRAN_FLUSH" to "1" ============================================================================================= TESTING: checkDependencyGenerationFlag from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:414) Check if -MMD works for dependency generation, and add it if it does Trying FC compiler flag -MMD -MP Defined make macro "FC_DEPFLAGS" to "-MMD -MP" Executing: gfortran -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -MMD -MP /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.F90 Successful compile: Source: program main end child config.compilersFortran 1.282757 ============================================================================================= TESTING: checkStdC from config.headers(config/BuildSystem/config/headers.py:105) ===== Checking compiler Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c ======== Checking running linked program ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #define ISLOWER(c) ('a' <= (c) && (c) <= 'z') #define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c)) #define XOR(e, f) (((e) && !(f)) || (!(e) && (f))) int main() { int i; for(i = 0; i < 256; i++) if (XOR(islower(i), ISLOWER(i)) || toupper(i) != TOUPPER(i)) exit(2); exit(0); ; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.o -lc++ -ldl Testing executable /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest to see if it can be run Executing: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest ============================================================================================= TESTING: checkStat from config.headers(config/BuildSystem/config/headers.py:138) Checks whether stat file-mode macros are broken, and defines STAT_MACROS_BROKEN if they are Preprocessing source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(S_ISBLK) && defined(S_IFDIR) # if S_ISBLK (S_IFDIR) You lose. # endif #endif #if defined(S_ISBLK) && defined(S_IFCHR) # if S_ISBLK (S_IFCHR) You lose. # endif #endif #if defined(S_ISLNK) && defined(S_IFREG) # if S_ISLNK (S_IFREG) You lose. # endif #endif #if defined(S_ISSOCK) && defined(S_IFREG) # if S_ISSOCK (S_IFREG) You lose. # endif #endif Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c ============================================================================================= TESTING: checkSysWait from config.headers(config/BuildSystem/config/headers.py:173) Check for POSIX.1 compatible sys/wait.h, and defines HAVE_SYS_WAIT_H if found ===== Checking compiler Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifndef WEXITSTATUS #define WEXITSTATUS(stat_val) ((unsigned)(stat_val) >> 8) #endif #ifndef WIFEXITED #define WIFEXITED(stat_val) (((stat_val) & 255) == 0) #endif int main() { int s; wait (&s); s = WIFEXITED (s) ? WEXITSTATUS (s) : 1; ; return 0; } Defined "HAVE_SYS_WAIT_H" to "1" ============================================================================================= TESTING: checkTime from config.headers(config/BuildSystem/config/headers.py:195) Checks if you can safely include both and , and if so defines TIME_WITH_SYS_TIME Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_TIME_H" to "1" Checking for header: sys/time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TIME_H" to "1" ============================================================================================= TESTING: checkMath from config.headers(config/BuildSystem/config/headers.py:201) Checks for the math headers and defines Checking for header: math.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : ===== Checking compiler Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:8:8: warning: if statement has empty body [-Wempty-body] if (pi); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:8:8: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { double pi = M_PI; if (pi); ; return 0; } Found math #defines, like M_PI ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SETJMP_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 366 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/confdefs.h" 1 # 2 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conffix.h" 1 # 3 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'dos.h' file not found #include ^~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'dos.h' file not found #include ^~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'dos.h' file not found#include ^~~~~~~1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FCNTL_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FLOAT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 366 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/confdefs.h" 1 # 2 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conffix.h" 1 # 3 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'io.h' file not found #include ^~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'io.h' file not found #include ^~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'io.h' file not found#include ^~~~~~1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 366 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/confdefs.h" 1 # 2 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conffix.h" 1 # 3 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'malloc.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'malloc.h' file not found #include ^~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'malloc.h' file not found#include ^~~~~~~~~~1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_PWD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_STRINGS_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_UNISTD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 366 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/confdefs.h" 1 # 2 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conffix.h" 1 # 3 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'sys/sysinfo.h' file not found #include ^~~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'sys/sysinfo.h' file not found #include ^~~~~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'sys/sysinfo.h' file not found#include ^~~~~~~~~~~~~~~1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_MACHINE_ENDIAN_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_PARAM_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 366 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/confdefs.h" 1 # 2 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conffix.h" 1 # 3 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'sys/procfs.h' file not found #include ^~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'sys/procfs.h' file not found #include ^~~~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'sys/procfs.h' file not found#include ^~~~~~~~~~~~~~1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_RESOURCE_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 366 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/confdefs.h" 1 # 2 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conffix.h" 1 # 3 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'sys/systeminfo.h' file not found #include ^~~~~~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'sys/systeminfo.h' file not found #include ^~~~~~~~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'sys/systeminfo.h' file not found#include ^~~~~~~~~~~~~~~~~~1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TIMES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_UTSNAME_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_SOCKET_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_WAIT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_NETINET_IN_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_NETDB_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: direct.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 366 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/confdefs.h" 1 # 2 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conffix.h" 1 # 3 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'direct.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'direct.h' file not found #include ^~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'direct.h' file not found#include ^~~~~~~~~~1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_TIME_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 366 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/confdefs.h" 1 # 2 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conffix.h" 1 # 3 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'Ws2tcpip.h' file not found #include ^~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'Ws2tcpip.h' file not found #include ^~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'Ws2tcpip.h' file not found#include ^~~~~~~~~~~~1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TYPES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 366 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/confdefs.h" 1 # 2 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conffix.h" 1 # 3 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'WindowsX.h' file not found #include ^~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'WindowsX.h' file not found #include ^~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'WindowsX.h' file not found#include ^~~~~~~~~~~~1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FLOAT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 366 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/confdefs.h" 1 # 2 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conffix.h" 1 # 3 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'ieeefp.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'ieeefp.h' file not found #include ^~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'ieeefp.h' file not found#include ^~~~~~~~~~1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_STDINT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_PTHREAD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: inttypes.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_INTTYPES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: immintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_IMMINTRIN_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: zmmintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 366 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/confdefs.h" 1 # 2 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conffix.h" 1 # 3 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'zmmintrin.h' file not found #include ^~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'zmmintrin.h' file not found #include ^~~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'zmmintrin.h' file not found#include ^~~~~~~~~~~~~1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SETJMP_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 366 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/confdefs.h" 1 # 2 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conffix.h" 1 # 3 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'dos.h' file not found #include ^~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'dos.h' file not found #include ^~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'dos.h' file not found#include ^~~~~~~1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FCNTL_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FLOAT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 366 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/confdefs.h" 1 # 2 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conffix.h" 1 # 3 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'io.h' file not found #include ^~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'io.h' file not found #include ^~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'io.h' file not found#include ^~~~~~1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 366 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/confdefs.h" 1 # 2 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conffix.h" 1 # 3 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'malloc.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'malloc.h' file not found #include ^~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'malloc.h' file not found#include ^~~~~~~~~~1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_PWD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_STRINGS_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_UNISTD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 366 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/confdefs.h" 1 # 2 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conffix.h" 1 # 3 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'sys/sysinfo.h' file not found #include ^~~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'sys/sysinfo.h' file not found #include ^~~~~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'sys/sysinfo.h' file not found#include ^~~~~~~~~~~~~~~1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_MACHINE_ENDIAN_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_PARAM_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 366 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/confdefs.h" 1 # 2 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conffix.h" 1 # 3 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'sys/procfs.h' file not found #include ^~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'sys/procfs.h' file not found #include ^~~~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'sys/procfs.h' file not found#include ^~~~~~~~~~~~~~1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_RESOURCE_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 366 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/confdefs.h" 1 # 2 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conffix.h" 1 # 3 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'sys/systeminfo.h' file not found #include ^~~~~~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'sys/systeminfo.h' file not found #include ^~~~~~~~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'sys/systeminfo.h' file not found#include ^~~~~~~~~~~~~~~~~~1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TIMES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_UTSNAME_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_SOCKET_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_WAIT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_NETINET_IN_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_NETDB_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: direct.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 366 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/confdefs.h" 1 # 2 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conffix.h" 1 # 3 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'direct.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'direct.h' file not found #include ^~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'direct.h' file not found#include ^~~~~~~~~~1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_TIME_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 366 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/confdefs.h" 1 # 2 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conffix.h" 1 # 3 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'Ws2tcpip.h' file not found #include ^~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'Ws2tcpip.h' file not found #include ^~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'Ws2tcpip.h' file not found#include ^~~~~~~~~~~~1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TYPES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 366 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/confdefs.h" 1 # 2 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conffix.h" 1 # 3 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'WindowsX.h' file not found #include ^~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'WindowsX.h' file not found #include ^~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'WindowsX.h' file not found#include ^~~~~~~~~~~~1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FLOAT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 366 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/confdefs.h" 1 # 2 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conffix.h" 1 # 3 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'ieeefp.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'ieeefp.h' file not found #include ^~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'ieeefp.h' file not found#include ^~~~~~~~~~1 error generated.: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_STDINT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_PTHREAD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: inttypes.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_INTTYPES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: immintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_IMMINTRIN_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: zmmintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 366 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/confdefs.h" 1 # 2 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conffix.h" 1 # 3 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'zmmintrin.h' file not found #include ^~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'zmmintrin.h' file not found #include ^~~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'zmmintrin.h' file not found#include ^~~~~~~~~~~~~1 error generated.: ============================================================================================= TESTING: checkRecursiveMacros from config.headers(config/BuildSystem/config/headers.py:216) Checks that the preprocessor allows recursive macros, and if not defines HAVE_BROKEN_RECURSIVE_MACRO ===== Checking compiler Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void a(int i, int j) {} #define a(b) a(b,__LINE__) int main() { a(0); ; return 0; } child config.headers 3.727635 ============================================================================================= TESTING: configureCacheDetails from config.utilities.cacheDetails(config/BuildSystem/config/utilities/cacheDetails.py:78) Try to determine the size and associativity of the cache. ===== Checking compiler Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails/conftest.c:4:60: error: use of undeclared identifier '_SC_LEVEL1_DCACHE_LINESIZE'; did you mean 'getconf_LEVEL1_DCACHE_LINESIZE'? long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } ^~~~~~~~~~~~~~~~~~~~~~~~~~ getconf_LEVEL1_DCACHE_LINESIZE /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails/conftest.c:4:6: note: 'getconf_LEVEL1_DCACHE_LINESIZE' declared here long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } ^ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { ; return 0; } ===== Checking compiler Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val=-1; FILE *f = popen("getconf LEVEL1_DCACHE_LINESIZE","r"); fscanf(f,"%ld",&val); pclose(f); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { ; return 0; } ======== Checking running linked program ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val=-1; FILE *f = popen("getconf LEVEL1_DCACHE_LINESIZE","r"); fscanf(f,"%ld",&val); pclose(f); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_LINESIZE()); fclose(output);; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails/conftest.o -lc++ -ldl Testing executable /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails/conftest to see if it can be run Executing: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails/conftest Defined "LEVEL1_DCACHE_LINESIZE" to "32" child config.utilities.cacheDetails 0.346395 ============================================================================================= TESTING: check_struct_sigaction from config.types(config/BuildSystem/config/types.py:42) Checks if "struct sigaction" exists in signal.h. This check is for C89 check. Checking for type: struct sigaction ===== Checking compiler Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.c:11:18: warning: unused variable 'a' [-Wunused-variable] struct sigaction a;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { struct sigaction a;; return 0; } struct sigaction found Defined "HAVE_STRUCT_SIGACTION" to "1" ============================================================================================= TESTING: check__int64 from config.types(config/BuildSystem/config/types.py:48) Checks if __int64 exists. This is primarily for windows. Checking for type: __int64 ===== Checking compiler Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.c:11:1: error: unknown type name '__int64'; did you mean '__int64_t'? __int64 a;; ^~~~~~~ __int64_t /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/i386/_types.h:46:33: note: '__int64_t' declared here typedef long long __int64_t; ^ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { __int64 a;; return 0; } __int64 found ============================================================================================= TESTING: checkSizeTypes from config.types(config/BuildSystem/config/types.py:54) Checks for types associated with sizes, such as size_t. Checking for type: size_t ===== Checking compiler Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.c:11:8: warning: unused variable 'a' [-Wunused-variable] size_t a;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { size_t a;; return 0; } size_t found ============================================================================================= TESTING: checkFileTypes from config.types(config/BuildSystem/config/types.py:64) Checks for types associated with files, such as mode_t, off_t, etc. Checking for type: mode_t ===== Checking compiler Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.c:11:8: warning: unused variable 'a' [-Wunused-variable] mode_t a;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { mode_t a;; return 0; } mode_t found Checking for type: off_t ===== Checking compiler Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.c:11:7: warning: unused variable 'a' [-Wunused-variable] off_t a;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { off_t a;; return 0; } off_t found ============================================================================================= TESTING: checkIntegerTypes from config.types(config/BuildSystem/config/types.py:59) Checks for types associated with integers, such as int32_t. Checking for type: int32_t ===== Checking compiler Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.c:11:9: warning: unused variable 'a' [-Wunused-variable] int32_t a;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { int32_t a;; return 0; } int32_t found ============================================================================================= TESTING: checkPID from config.types(config/BuildSystem/config/types.py:70) Checks for pid_t, and defines it if necessary Checking for type: pid_t ===== Checking compiler Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.c:11:7: warning: unused variable 'a' [-Wunused-variable] pid_t a;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { pid_t a;; return 0; } pid_t found ============================================================================================= TESTING: checkUID from config.types(config/BuildSystem/config/types.py:74) Checks for uid_t and gid_t, and defines them if necessary Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.c ============================================================================================= TESTING: checkC99Complex from config.types(config/BuildSystem/config/types.py:81) Check for complex numbers in in C99 std Note that since PETSc source code uses _Complex we test specifically for that, not complex ===== Checking compiler Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.o -lc++ -ldl Defined "HAVE_C99_COMPLEX" to "1" ============================================================================================= TESTING: checkCxxComplex from config.types(config/BuildSystem/config/types.py:92) Check for complex numbers in namespace std ===== Checking linker Executing: clang++ -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -std=c++14 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.cc Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.cc:6:22: warning: unused variable 'x' [-Wunused-variable] std::complex x; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { std::complex x; ; return 0; } Executing: clang++ -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.o -lc++ -ldl Defined "HAVE_CXX_COMPLEX" to "1" ============================================================================================= TESTING: checkConst from config.types(config/BuildSystem/config/types.py:103) Checks for working const, and if not found defines it to empty string ===== Checking compiler Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.c:24:16: warning: if statement has empty body [-Wempty-body] if (zero.x); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.c:24:16: note: put the semicolon on a separate line to silence this warning /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.c:25:14: warning: if statement has empty body [-Wempty-body] if (x[0]); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.c:25:14: note: put the semicolon on a separate line to silence this warning /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.c:31:14: warning: if statement has empty body [-Wempty-body] if (*s); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.c:31:14: note: put the semicolon on a separate line to silence this warning /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.c:52:15: warning: if statement has empty body [-Wempty-body] if (foo); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.c:52:15: note: put the semicolon on a separate line to silence this warning /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.c:46:20: warning: variable 'b' is uninitialized when used here [-Wuninitialized] struct s *b; b->j = 5; ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.c:46:18: note: initialize the variable 'b' to silence this warning struct s *b; b->j = 5; ^ = 0 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.c:30:8: warning: variable 't' is uninitialized when used here [-Wuninitialized] *t++ = 0; ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.c:27:14: note: initialize the variable 't' to silence this warning char *t; ^ = 0 6 warnings generated. Source: #include "confdefs.h" #include "conffix.h" int main() { /* Ultrix mips cc rejects this. */ typedef int charset[2]; const charset x; /* SunOS 4.1.1 cc rejects this. */ char const *const *ccp; char **p; /* NEC SVR4.0.2 mips cc rejects this. */ struct point {int x, y;}; static struct point const zero = {0,0}; /* AIX XL C 1.02.0.0 rejects this. It does not let you subtract one const X* pointer from another in an arm of an if-expression whose if-part is not a constant expression */ const char *g = "string"; ccp = &g + (g ? g-g : 0); /* HPUX 7.0 cc rejects these. */ ++ccp; p = (char**) ccp; ccp = (char const *const *) p; /* This section avoids unused variable warnings */ if (zero.x); if (x[0]); { /* SCO 3.2v4 cc rejects this. */ char *t; char const *s = 0 ? (char *) 0 : (char const *) 0; *t++ = 0; if (*s); } { /* Someone thinks the Sun supposedly-ANSI compiler will reject this. */ int x[] = {25, 17}; const int *foo = &x[0]; ++foo; } { /* Sun SC1.0 ANSI compiler rejects this -- but not the above. */ typedef const int *iptr; iptr p = 0; ++p; } { /* AIX XL C 1.02.0.0 rejects this saying "k.c", line 2.27: 1506-025 (S) Operand must be a modifiable lvalue. */ struct s { int j; const int *ap[3]; }; struct s *b; b->j = 5; } { /* ULTRIX-32 V3.1 (Rev 9) vcc rejects this */ const int foo = 10; /* Get rid of unused variable warning */ if (foo); } ; return 0; } ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: void * ===== Checking compiler Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(void *)==8)*2-1]; Defined "SIZEOF_VOID_P" to "8" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: short ===== Checking compiler Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(short)==2)*2-1]; Defined "SIZEOF_SHORT" to "2" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: int ===== Checking compiler Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(int)==4)*2-1]; Defined "SIZEOF_INT" to "4" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long ===== Checking compiler Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(long)==8)*2-1]; Defined "SIZEOF_LONG" to "8" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long long ===== Checking compiler Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(long long)==8)*2-1]; Defined "SIZEOF_LONG_LONG" to "8" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: enum ===== Checking compiler Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(enum{ENUM_DUMMY})==4)*2-1]; Defined "SIZEOF_ENUM" to "4" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: size_t ===== Checking compiler Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(size_t)==8)*2-1]; Defined "SIZEOF_SIZE_T" to "8" ============================================================================================= TESTING: checkVisibility from config.types(config/BuildSystem/config/types.py:193) ===== Checking compiler Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { __attribute__((visibility ("default"))) int foo(void);; return 0; } Defined "USE_VISIBILITY_C" to "1" ===== Checking compiler Executing: clang++ -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -std=c++14 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { __attribute__((visibility ("default"))) int foo(void);; return 0; } Defined "USE_VISIBILITY_CXX" to "1" ============================================================================================= TESTING: checkMaxPathLen from config.types(config/BuildSystem/config/types.py:215) Determining PETSC_MAX_PATH_LEN ===== Checking compiler Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(MAXPATHLEN) # define PETSC_MAX_PATH_LEN MAXPATHLEN #elif defined(MAX_PATH) # define PETSC_MAX_PATH_LEN MAX_PATH #elif defined(_MAX_PATH) # define PETSC_MAX_PATH_LEN _MAX_PATH #else # define PETSC_MAX_PATH_LEN 4096 #endif #define xstr(s) str(s) #define str(s) #s char petsc_max_path_len[] = xstr(PETSC_MAX_PATH_LEN); int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(MAXPATHLEN) # define PETSC_MAX_PATH_LEN MAXPATHLEN #elif defined(MAX_PATH) # define PETSC_MAX_PATH_LEN MAX_PATH #elif defined(_MAX_PATH) # define PETSC_MAX_PATH_LEN _MAX_PATH #else # define PETSC_MAX_PATH_LEN 4096 #endif #define xstr(s) str(s) #define str(s) #s char petsc_max_path_len[] = xstr(PETSC_MAX_PATH_LEN); Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.c Defined "MAX_PATH_LEN" to "1024" child config.types 2.822482 ============================================================================================= TESTING: configureMemAlign from PETSc.options.memAlign(config/PETSc/options/memAlign.py:29) Choose alignment Defined "MEMALIGN" to "16" Memory alignment is 16 child PETSc.options.memAlign 0.002635 ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -lfpe -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lfpe clang: error: linker command failed with exit code 1 (use -v to see invocation) ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -lsocket -lnsl -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lsocket clang: error: linker command failed with exit code 1 (use -v to see invocation) ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -lfpe -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lfpe clang: error: linker command failed with exit code 1 (use -v to see invocation) ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -lsocket -lnsl -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lsocket clang: error: linker command failed with exit code 1 (use -v to see invocation) ============================================================================================= TESTING: checkMath from config.libraries(config/BuildSystem/config/libraries.py:264) Check for sin() in libm, the math library Checking for functions [sin floor log10 pow] in library [''] [] ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include double sin(double); static void _check_sin() { double x,y; scanf("%lf",&x); y = sin(x); printf("%f",y); ; } #include double floor(double); static void _check_floor() { double x,y; scanf("%lf",&x); y = floor(x); printf("%f",y); ; } #include double log10(double); static void _check_log10() { double x,y; scanf("%lf",&x); y = log10(x); printf("%f",y); ; } #include double pow(double, double); static void _check_pow() { double x,y; scanf("%lf",&x); y = pow(x,x); printf("%f",y); ; } int main() { _check_sin(); _check_floor(); _check_log10(); _check_pow();; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -lc++ -ldl CheckMath: using math library [] ============================================================================================= TESTING: checkMathErf from config.libraries(config/BuildSystem/config/libraries.py:283) Check for erf() in libm, the math library Checking for functions [erf] in library [] [] ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_erf() { double (*checkErf)(double) = erf;double x = 0,y; y = (*checkErf)(x); } int main() { _check_erf();; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -lc++ -ldl erf() found Defined "HAVE_ERF" to "1" ============================================================================================= TESTING: checkMathTgamma from config.libraries(config/BuildSystem/config/libraries.py:292) Check for tgamma() in libm, the math library Checking for functions [tgamma] in library [] [] ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_tgamma() { double (*checkTgamma)(double) = tgamma;double x = 0,y; y = (*checkTgamma)(x); } int main() { _check_tgamma();; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -lc++ -ldl tgamma() found Defined "HAVE_TGAMMA" to "1" ============================================================================================= TESTING: checkMathLgamma from config.libraries(config/BuildSystem/config/libraries.py:301) Check for lgamma() in libm, the math library Checking for functions [lgamma] in library [] [] ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include #include static void _check_lgamma() { double (*checkLgamma)(double) = lgamma;double x = 1,y; y = (*checkLgamma)(x);if (y != 0.) abort(); } int main() { _check_lgamma();; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -lc++ -ldl lgamma() found Defined "HAVE_LGAMMA" to "1" ============================================================================================= TESTING: checkMathFenv from config.libraries(config/BuildSystem/config/libraries.py:314) Checks if can be used with FE_DFL_ENV Checking for functions [fesetenv] in library [] [] ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_fesetenv() { fesetenv(FE_DFL_ENV);; } int main() { _check_fesetenv();; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -lc++ -ldl Defined "HAVE_FENV_H" to "1" ============================================================================================= TESTING: checkMathLog2 from config.libraries(config/BuildSystem/config/libraries.py:322) Check for log2() in libm, the math library Checking for functions [log2] in library [] [] ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c:5:81: warning: unused variable 'y' [-Wunused-variable] static void _check_log2() { double (*checkLog2)(double) = log2; double x = 2.5, y = (*checkLog2)(x); } ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_log2() { double (*checkLog2)(double) = log2; double x = 2.5, y = (*checkLog2)(x); } int main() { _check_log2();; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -lc++ -ldl log2() found Defined "HAVE_LOG2" to "1" ============================================================================================= TESTING: checkRealtime from config.libraries(config/BuildSystem/config/libraries.py:331) Check for presence of clock_gettime() in realtime library (POSIX Realtime extensions) Checking for functions [clock_gettime] in library [''] [] ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_clock_gettime() { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; } int main() { _check_clock_gettime();; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -lc++ -ldl realtime functions are linked in by default ============================================================================================= TESTING: checkDynamic from config.libraries(config/BuildSystem/config/libraries.py:347) Check for the header and libraries necessary for dynamic library manipulation Checking for functions [dlopen] in library ['dl'] [] ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } int main() { _check_dlopen();; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -ldl -lc++ -ldl Defined "HAVE_LIBDL" to "1" Checking for header: dlfcn.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_DLFCN_H" to "1" child config.libraries 1.612552 ============================================================================================= TESTING: configureLibraryOptions from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:37) Sets PETSC_USE_DEBUG, PETSC_USE_INFO, PETSC_USE_LOG, PETSC_USE_CTABLE, PETSC_USE_FORTRAN_KERNELS, and PETSC_USE_AVX512_KERNELS Defined "USE_LOG" to "1" Defined "USE_DEBUG" to "1" Defined "USE_INFO" to "1" Defined "USE_CTABLE" to "1" Defined "USE_BACKWARD_LOOP" to "1" **********Checking if running on BGL/IBM detected Checking for functions [bgl_perfctr_void] in library [''] [] ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char bgl_perfctr_void(); static void _check_bgl_perfctr_void() { bgl_perfctr_void(); } int main() { _check_bgl_perfctr_void();; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_bgl_perfctr_void", referenced from: __check_bgl_perfctr_void in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [ADIOI_BGL_Open] in library [''] [] ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ADIOI_BGL_Open(); static void _check_ADIOI_BGL_Open() { ADIOI_BGL_Open(); } int main() { _check_ADIOI_BGL_Open();; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_ADIOI_BGL_Open", referenced from: __check_ADIOI_BGL_Open in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) *********BGL/IBM test failure Defined "USE_AVX512_KERNELS" to "1" Defined "Alignx(a,b)" to " " ============================================================================================= TESTING: configureISColorValueType from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:95) Sets PETSC_IS_COLORING_VALUE_TYPE, PETSC_MPIU_IS_COLORING_VALUE_TYPE, and PETSC_IS_COLORING_MAX as required by ISColoring Defined "MPIU_IS_COLORING_VALUE_TYPE" to "MPI_UNSIGNED_SHORT" Defined "IS_COLORING_MAX" to "USHRT_MAX" Defined "IS_COLORING_VALUE_TYPE" to "short" Defined "IS_COLORING_VALUE_TYPE_F" to "integer2" child PETSc.options.libraryOptions 0.264649 child config.atomics 0.000016 ============================================================================================= TESTING: checkSysinfo from config.functions(config/BuildSystem/config/functions.py:106) Check whether sysinfo takes three arguments, and if it does define HAVE_SYSINFO_3ARG Checking for functions [sysinfo] ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysinfo(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sysinfo) || defined (__stub___sysinfo) sysinfo_will_always_fail_with_ENOSYS(); #else sysinfo(); #endif ; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_sysinfo", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) ============================================================================================= TESTING: checkVPrintf from config.functions(config/BuildSystem/config/functions.py:125) Checks whether vprintf requires a char * last argument, and if it does defines HAVE_VPRINTF_CHAR ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vprintf( "%d", Argp ); ; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.o -lc++ -ldl ============================================================================================= TESTING: checkVFPrintf from config.functions(config/BuildSystem/config/functions.py:131) Checks whether vfprintf requires a char * last argument, and if it does defines HAVE_VFPRINTF_CHAR ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vfprintf(stdout, "%d", Argp ); ; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.o -lc++ -ldl ============================================================================================= TESTING: checkVSNPrintf from config.functions(config/BuildSystem/config/functions.py:137) Checks whether vsnprintf requires a char * last argument, and if it does defines HAVE_VSNPRINTF_CHAR ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp;char str[6]; vsnprintf(str,5, "%d", Argp ); ; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.o -lc++ -ldl Defined "HAVE_VSNPRINTF" to "1" ============================================================================================= TESTING: checkNanosleep from config.functions(config/BuildSystem/config/functions.py:167) Check for functional nanosleep() - as time.h behaves differently for different compiler flags - like -std=c89 ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { struct timespec tp; tp.tv_sec = 0; tp.tv_nsec = (long)(1e9); nanosleep(&tp,0); ; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.o -lc++ -ldl Defined "HAVE_NANOSLEEP" to "1" ============================================================================================= TESTING: checkMemmove from config.functions(config/BuildSystem/config/functions.py:173) Check for functional memmove() - as MS VC requires correct includes to for this test ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { char c1[1], c2[1] = "c"; size_t n=1; memmove(c1,c2,n); ; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.o -lc++ -ldl Defined "HAVE_MEMMOVE" to "1" ============================================================================================= TESTING: checkSignalHandlerType from config.functions(config/BuildSystem/config/functions.py:143) Checks the type of C++ signals handlers, and defines SIGNAL_CAST to the correct value ===== Checking linker Executing: clang++ -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -std=c++14 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include static void myhandler(int sig) {} int main() { signal(SIGFPE,myhandler); ; return 0; } Executing: clang++ -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.o -lc++ -ldl Defined "SIGNAL_CAST" to " " ============================================================================================= TESTING: checkFreeReturnType from config.functions(config/BuildSystem/config/functions.py:153) Checks whether free returns void or int, and defines HAVE_FREE_RETURN_INT ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.c:6:25: error: assigning to 'int' from incompatible type 'void' int ierr; void *p; ierr = free(p); return 0; ^ ~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ierr; void *p; ierr = free(p); return 0; ; return 0; } Compile failed inside link ============================================================================================= TESTING: checkVariableArgumentLists from config.functions(config/BuildSystem/config/functions.py:159) Checks whether the variable argument list functionality is working ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { va_list l1, l2; va_copy(l1, l2); return 0; ; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.o -lc++ -ldl Defined "HAVE_VA_COPY" to "1" ============================================================================================= TESTING: checkClassify from config.functions(config/BuildSystem/config/functions.py:85) Recursive decompose to rapidly classify functions as found or missing To confirm that a function is missing, we require a compile/link failure with only that function in a compilation unit. In contrast, we can confirm that many functions are present by compiling them all together in a large compilation unit. We optimistically compile everything together, then trim all functions that were named in the error message and bisect the result. The trimming is only an optimization to increase the likelihood of a big-batch compile succeeding; we do not rely on the compiler naming missing functions. Checking for functions [fpresetsticky fork strcasecmp dlopen clock _set_output_format bzero dlclose sbreak access gethostbyname time _access socket getwd usleep PXFGETARG getpagesize readlink _mkdir _sleep realpath getcwd stricmp uname _getcwd _lseek dlerror rand getdomainname dlsym snprintf memalign drand48 lseek sleep _snprintf fpsetsticky gethostname _pipe getrusage popen] ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.c:15:6: warning: incompatible redeclaration of library function 'strcasecmp' [-Wincompatible-library-redeclaration] char strcasecmp(); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.c:15:6: note: 'strcasecmp' is a builtin with type 'int (const char *, const char *)' /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.c:19:6: warning: incompatible redeclaration of library function 'bzero' [-Wincompatible-library-redeclaration] char bzero(); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.c:19:6: note: 'bzero' is a builtin with type 'void (void *, unsigned long)' /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.c:44:6: warning: incompatible redeclaration of library function 'snprintf' [-Wincompatible-library-redeclaration] char snprintf(); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.c:44:6: note: 'snprintf' is a builtin with type 'int (char *, unsigned long, const char *, ...)' 3 warnings generated. Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fpresetsticky(); char fork(); char strcasecmp(); char dlopen(); char clock(); char _set_output_format(); char bzero(); char dlclose(); char sbreak(); char access(); char gethostbyname(); char time(); char _access(); char socket(); char getwd(); char usleep(); char PXFGETARG(); char getpagesize(); char readlink(); char _mkdir(); char _sleep(); char realpath(); char getcwd(); char stricmp(); char uname(); char _getcwd(); char _lseek(); char dlerror(); char rand(); char getdomainname(); char dlsym(); char snprintf(); char memalign(); char drand48(); char lseek(); char sleep(); char _snprintf(); char fpsetsticky(); char gethostname(); char _pipe(); char getrusage(); char popen(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fpresetsticky) || defined (__stub___fpresetsticky) fpresetsticky_will_always_fail_with_ENOSYS(); #else fpresetsticky(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub__mkdir) || defined (__stub____mkdir) _mkdir_will_always_fail_with_ENOSYS(); #else _mkdir(); #endif #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif #if defined (__stub_fpsetsticky) || defined (__stub___fpsetsticky) fpsetsticky_will_always_fail_with_ENOSYS(); #else fpsetsticky(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub__pipe) || defined (__stub____pipe) _pipe_will_always_fail_with_ENOSYS(); #else _pipe(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif ; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_PXFGETARG", referenced from: _main in conftest.o "__access", referenced from: _main in conftest.o "__getcwd", referenced from: _main in conftest.o "__lseek", referenced from: _main in conftest.o "__mkdir", referenced from: _main in conftest.o "__pipe", referenced from: _main in conftest.o "__set_output_format", referenced from: _main in conftest.o "__sleep", referenced from: _main in conftest.o "__snprintf", referenced from: _main in conftest.o "_fpresetsticky", referenced from: _main in conftest.o "_fpsetsticky", referenced from: _main in conftest.o "_memalign", referenced from: _main in conftest.o "_sbreak", referenced from: _main in conftest.o "_stricmp", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [fork strcasecmp dlopen clock bzero dlclose gethostbyname time socket getwd usleep] ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.c:14:6: warning: incompatible redeclaration of library function 'strcasecmp' [-Wincompatible-library-redeclaration] char strcasecmp(); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.c:14:6: note: 'strcasecmp' is a builtin with type 'int (const char *, const char *)' /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.c:17:6: warning: incompatible redeclaration of library function 'bzero' [-Wincompatible-library-redeclaration] char bzero(); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.c:17:6: note: 'bzero' is a builtin with type 'void (void *, unsigned long)' 2 warnings generated. Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fork(); char strcasecmp(); char dlopen(); char clock(); char bzero(); char dlclose(); char gethostbyname(); char time(); char socket(); char getwd(); char usleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif ; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.o -lc++ -ldl Defined "HAVE_FORK" to "1" Defined "HAVE_STRCASECMP" to "1" Defined "HAVE_DLOPEN" to "1" Defined "HAVE_CLOCK" to "1" Defined "HAVE_BZERO" to "1" Defined "HAVE_DLCLOSE" to "1" Defined "HAVE_GETHOSTBYNAME" to "1" Defined "HAVE_TIME" to "1" Defined "HAVE_SOCKET" to "1" Defined "HAVE_GETWD" to "1" Defined "HAVE_USLEEP" to "1" Checking for functions [getpagesize readlink realpath uname dlerror rand getdomainname dlsym drand48 gethostname getrusage popen] ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getpagesize(); char readlink(); char realpath(); char uname(); char dlerror(); char rand(); char getdomainname(); char dlsym(); char drand48(); char gethostname(); char getrusage(); char popen(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif ; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.o -lc++ -ldl Defined "HAVE_GETPAGESIZE" to "1" Defined "HAVE_READLINK" to "1" Defined "HAVE_REALPATH" to "1" Defined "HAVE_UNAME" to "1" Defined "HAVE_DLERROR" to "1" Defined "HAVE_RAND" to "1" Defined "HAVE_GETDOMAINNAME" to "1" Defined "HAVE_DLSYM" to "1" Defined "HAVE_DRAND48" to "1" Defined "HAVE_GETHOSTNAME" to "1" Defined "HAVE_GETRUSAGE" to "1" Defined "HAVE_POPEN" to "1" Checking for functions [fpresetsticky] ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fpresetsticky(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fpresetsticky) || defined (__stub___fpresetsticky) fpresetsticky_will_always_fail_with_ENOSYS(); #else fpresetsticky(); #endif ; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_fpresetsticky", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [_set_output_format] ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _set_output_format(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif ; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__set_output_format", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [sbreak] ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif ; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_sbreak", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [access] ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif ; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.o -lc++ -ldl Defined "HAVE_ACCESS" to "1" Checking for functions [_access] ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif ; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__access", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [PXFGETARG] ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif ; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_PXFGETARG", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [_mkdir] ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _mkdir(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__mkdir) || defined (__stub____mkdir) _mkdir_will_always_fail_with_ENOSYS(); #else _mkdir(); #endif ; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__mkdir", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [_sleep] ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif ; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__sleep", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [getcwd] ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif ; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.o -lc++ -ldl Defined "HAVE_GETCWD" to "1" Checking for functions [stricmp] ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_stricmp", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [_getcwd] ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif ; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__getcwd", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [_lseek] ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif ; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__lseek", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [snprintf] ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.c:13:6: warning: incompatible redeclaration of library function 'snprintf' [-Wincompatible-library-redeclaration] char snprintf(); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.c:13:6: note: 'snprintf' is a builtin with type 'int (char *, unsigned long, const char *, ...)' 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif ; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.o -lc++ -ldl Defined "HAVE_SNPRINTF" to "1" Checking for functions [memalign] ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char memalign(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif ; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_memalign", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [lseek] ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif ; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.o -lc++ -ldl Defined "HAVE_LSEEK" to "1" Checking for functions [sleep] ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif ; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.o -lc++ -ldl Defined "HAVE_SLEEP" to "1" Checking for functions [_snprintf] ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif ; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__snprintf", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [fpsetsticky] ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fpsetsticky(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fpsetsticky) || defined (__stub___fpsetsticky) fpsetsticky_will_always_fail_with_ENOSYS(); #else fpsetsticky(); #endif ; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_fpsetsticky", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [_pipe] ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _pipe(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__pipe) || defined (__stub____pipe) _pipe_will_always_fail_with_ENOSYS(); #else _pipe(); #endif ; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "__pipe", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) ============================================================================================= TESTING: checkMmap from config.functions(config/BuildSystem/config/functions.py:179) Check for functional mmap() to allocate shared memory and define HAVE_MMAP ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { int fd; fd=open("/tmp/file",O_RDWR); mmap((void*)0,100,PROT_READ|PROT_WRITE,MAP_SHARED,fd,0); ; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions/conftest.o -lc++ -ldl Defined "HAVE_MMAP" to "1" child config.functions 4.396332 ============================================================================================= TESTING: configureMemorySize from config.utilities.getResidentSetSize(config/BuildSystem/config/utilities/getResidentSetSize.py:31) Try to determine how to measure the memory usage ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize/conftest.c:38:18: error: implicit declaration of function 'getpagesize' is invalid in C99 [-Werror,-Wimplicit-function-declaration] f2 = getpagesize() * ((double)(temp2.ru_maxrss-temp1.ru_maxrss))/(4.0*ARRAYSIZE); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize/conftest.c:58:2: error: expected '}' } ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize/conftest.c:12:12: note: to match this '{' int main() { ^ 2 errors generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include #include #include #include int main() { #define ARRAYSIZE 10000000 int i,*m; struct rusage temp1,temp2; double f0,f1,f2; if (getrusage(RUSAGE_SELF,&temp1)) { printf("Error calling getrusage()\n"); return -1; } m = malloc(ARRAYSIZE*sizeof(int)); if (!m) { printf("Error calling malloc()\n"); return -3; } for (i=0; i .90 && f0 < 1.1) { printf("uses bytes in getrusage()\n"); return 1; if (f1 > .90 && f1 < 1.1) { printf("uses 1024 size chunks in getrusage()\n"); return 2; } else if (f2 > .9 && f2 < 1.1) { printf("uses getpagesize() chunks in getrusage()\n"); return 3; } printf("unable to determine if uses bytes, 1024 or getpagesize() chunks in getrusage()\n"); return -2;; return 0; } Compile failed inside link output from getrusage() child config.utilities.getResidentSetSize 0.109931 ============================================================================================= TESTING: configureFortranCommandLine from config.utilities.fortranCommandLine(config/BuildSystem/config/utilities/fortranCommandLine.py:27) Check for the mechanism to retrieve command line arguments in Fortran Checking for functions [] in library [''] [] ===== Checking linker Executing: gfortran -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.F90 Successful compile: Source: program main integer i character*(80) arg i = command_argument_count() call get_command_argument(i,arg) end Executing: gfortran -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -lc++ -ldl Defined "HAVE_FORTRAN_GET_COMMAND_ARGUMENT" to "1" child config.utilities.fortranCommandLine 0.115643 ============================================================================================= TESTING: configureFeatureTestMacros from config.utilities.featureTestMacros(config/BuildSystem/config/utilities/featureTestMacros.py:13) Checks if certain feature test macros are support ===== Checking compiler Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros/conftest.c:4:10: fatal error: 'sysctl.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #define _POSIX_C_SOURCE 200112L #include int main() { ; return 0; } ===== Checking compiler Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #include int main() { ; return 0; } Defined "_BSD_SOURCE" to "1" ===== Checking compiler Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _DEFAULT_SOURCE #include int main() { ; return 0; } Defined "_DEFAULT_SOURCE" to "1" ===== Checking compiler Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros/conftest.c:7:1: error: use of undeclared identifier 'cpu_set_t' cpu_set_t mset; ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros/conftest.c:8:1: error: implicit declaration of function 'CPU_ZERO' is invalid in C99 [-Werror,-Wimplicit-function-declaration] CPU_ZERO(&mset);; ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros/conftest.c:8:11: error: use of undeclared identifier 'mset' CPU_ZERO(&mset);; ^ 3 errors generated. Source: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include int main() { cpu_set_t mset; CPU_ZERO(&mset);; return 0; } child config.utilities.featureTestMacros 0.297758 ============================================================================================= TESTING: configureMissingUtypeTypedefs from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:55) Checks if u_short is undefined ===== Checking compiler Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c:6:9: warning: unused variable 'foo' [-Wunused-variable] u_short foo; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { u_short foo; ; return 0; } ============================================================================================= TESTING: configureMissingFunctions from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:61) Checks for SOCKETS ============================================================================================= TESTING: configureMissingSignals from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:79) Check for missing signals, and define MISSING_ if necessary ===== Checking compiler Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGABRT; if (i); ; return 0; } ===== Checking compiler Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGALRM; if (i); ; return 0; } ===== Checking compiler Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGBUS; if (i); ; return 0; } ===== Checking compiler Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCHLD; if (i); ; return 0; } ===== Checking compiler Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCONT; if (i); ; return 0; } ===== Checking compiler Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGFPE; if (i); ; return 0; } ===== Checking compiler Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGHUP; if (i); ; return 0; } ===== Checking compiler Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGILL; if (i); ; return 0; } ===== Checking compiler Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGINT; if (i); ; return 0; } ===== Checking compiler Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGKILL; if (i); ; return 0; } ===== Checking compiler Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGPIPE; if (i); ; return 0; } ===== Checking compiler Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGQUIT; if (i); ; return 0; } ===== Checking compiler Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSEGV; if (i); ; return 0; } ===== Checking compiler Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSTOP; if (i); ; return 0; } ===== Checking compiler Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSYS; if (i); ; return 0; } ===== Checking compiler Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTERM; if (i); ; return 0; } ===== Checking compiler Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTRAP; if (i); ; return 0; } ===== Checking compiler Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTSTP; if (i); ; return 0; } ===== Checking compiler Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGURG; if (i); ; return 0; } ===== Checking compiler Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR1; if (i); ; return 0; } ===== Checking compiler Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR2; if (i); ; return 0; } ============================================================================================= TESTING: configureMissingGetdomainnamePrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:96) ===== Checking compiler Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c:21:7: warning: incompatible pointer types initializing 'int (*)(char *, size_t)' (aka 'int (*)(char *, unsigned long)') with an expression of type 'int (char *, int)' [-Wincompatible-pointer-types] int (*getdomainname_ptr)(char*,size_t) = getdomainname; ^ ~~~~~~~~~~~~~ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } ===== Checking linker Executing: clang++ -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -std=c++14 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.cc Possible ERROR while running compiler: exit code 1 stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.cc:21:7: error: cannot initialize a variable of type 'int (*)(char *, size_t)' (aka 'int (*)(char *, unsigned long)') with an lvalue of type 'int (char *, int)': type mismatch at 2nd parameter ('size_t' (aka 'unsigned long') vs 'int') int (*getdomainname_ptr)(char*,size_t) = getdomainname; ^ ~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Compile failed inside link ===== Checking linker Executing: clang++ -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -std=c++14 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,int) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Executing: clang++ -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.o -lc++ -ldl ============================================================================================= TESTING: configureMissingSrandPrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:121) ===== Checking compiler Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #include int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } ===== Checking linker Executing: clang++ -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -std=c++14 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #include int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Executing: clang++ -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing/conftest.o -lc++ -ldl child config.utilities.missing 2.596100 ============================================================================================= TESTING: configureFPTrap from config.utilities.FPTrap(config/BuildSystem/config/utilities/FPTrap.py:27) Checking the handling of floating point traps Checking for header: sigfpe.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 366 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/confdefs.h" 1 # 2 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conffix.h" 1 # 3 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'sigfpe.h' file not found #include ^~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'sigfpe.h' file not found #include ^~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'sigfpe.h' file not found#include ^~~~~~~~~~1 error generated.: Checking for header: fpxcp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 366 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/confdefs.h" 1 # 2 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conffix.h" 1 # 3 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'fpxcp.h' file not found #include ^~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'fpxcp.h' file not found #include ^~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'fpxcp.h' file not found#include ^~~~~~~~~1 error generated.: Checking for header: floatingpoint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 366 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/confdefs.h" 1 # 2 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conffix.h" 1 # 3 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'floatingpoint.h' file not found #include ^~~~~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'floatingpoint.h' file not found #include ^~~~~~~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'floatingpoint.h' file not found#include ^~~~~~~~~~~~~~~~~1 error generated.: child config.utilities.FPTrap 0.118759 ============================================================================================= TESTING: configureScalarType from PETSc.options.scalarTypes(config/PETSc/options/scalarTypes.py:40) Choose between real and complex numbers Scalar type is real ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes/conftest.c:6:21: warning: unused variable 'a' [-Wunused-variable] double b = 2.0; int a = isnormal(b); ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnormal(b); ; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes/conftest.o -lc++ -ldl Defined "HAVE_ISNORMAL" to "1" ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes/conftest.c:6:21: warning: unused variable 'a' [-Wunused-variable] double b = 2.0; int a = isnan(b); ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnan(b); ; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes/conftest.o -lc++ -ldl Defined "HAVE_ISNAN" to "1" ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes/conftest.c:6:21: warning: unused variable 'a' [-Wunused-variable] double b = 2.0; int a = isinf(b); ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isinf(b); ; return 0; } Executing: clang -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes/conftest.o -lc++ -ldl Defined "HAVE_ISINF" to "1" ============================================================================================= TESTING: configurePrecision from PETSc.options.scalarTypes(config/PETSc/options/scalarTypes.py:81) Set the default real number precision for PETSc objects Checking C compiler works with __float128 Checking for functions [logq] in library ['quadmath'] [] ===== Checking linker Executing: clang -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c:4:10: fatal error: 'quadmath.h' file not found #include ^~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_logq() { __float128 f; logq(f);; } int main() { _check_logq();; return 0; } Compile failed inside link Defined "USE_REAL_DOUBLE" to "1" Defined make macro "PETSC_SCALAR_SIZE" to "64" Precision is double child PETSc.options.scalarTypes 0.553261 ============================================================================================= TESTING: configureMkdir from config.programs(config/BuildSystem/config/programs.py:22) Make sure we can have mkdir automatically make intermediate directories Checking for program /usr/local/opt/ccache/libexec/mkdir...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/mkdir...not found Checking for program /usr/local/bin/mkdir...not found Checking for program /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mkdir...not found Checking for program /usr/local/sbin/mkdir...not found Checking for program /Users/jacobfaibussowitsch/.cargo/bin/mkdir...not found Checking for program /usr/bin/mkdir...not found Checking for program /usr/sbin/mkdir...not found Checking for program /bin/mkdir...found Executing: /bin/mkdir -p .conftest/tmp Adding -p flag to /bin/mkdir -p to automatically create directories Defined make macro "MKDIR" to "/bin/mkdir -p" ============================================================================================= TESTING: configureAutoreconf from config.programs(config/BuildSystem/config/programs.py:44) Check for autoreconf Checking for program /usr/local/opt/ccache/libexec/autoreconf...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/autoreconf...not found Checking for program /usr/local/bin/autoreconf...found Executing: ['/usr/local/bin/autoreconf'] autoreconf test successful! Checking for program /usr/local/opt/ccache/libexec/libtoolize...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/libtoolize...not found Checking for program /usr/local/bin/libtoolize...not found Checking for program /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/libtoolize...not found Checking for program /usr/local/sbin/libtoolize...not found Checking for program /Users/jacobfaibussowitsch/.cargo/bin/libtoolize...not found Checking for program /usr/bin/libtoolize...not found Checking for program /usr/sbin/libtoolize...not found Checking for program /bin/libtoolize...not found Checking for program /sbin/libtoolize...not found Checking for program /usr/X11R6/bin/libtoolize...not found Checking for program /opt/local/bin/libtoolize...not found Checking for program /Users/jacobfaibussowitsch/NoSync/petsc/lib/petsc/bin/win32fe/libtoolize...not found Checking for program /usr/local/opt/ccache/libexec/glibtoolize...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/glibtoolize...not found Checking for program /usr/local/bin/glibtoolize...found ============================================================================================= TESTING: configurePrograms from config.programs(config/BuildSystem/config/programs.py:71) Check for the programs needed to build and run PETSc Checking for program /usr/local/opt/ccache/libexec/sh...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/sh...not found Checking for program /usr/local/bin/sh...not found Checking for program /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/sh...not found Checking for program /usr/local/sbin/sh...not found Checking for program /Users/jacobfaibussowitsch/.cargo/bin/sh...not found Checking for program /usr/bin/sh...not found Checking for program /usr/sbin/sh...not found Checking for program /bin/sh...found Defined make macro "SHELL" to "/bin/sh" Checking for program /usr/local/opt/ccache/libexec/sed...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/sed...found Defined make macro "SED" to "/usr/local/opt/gnu-sed/libexec/gnubin/sed" Executing: /usr/local/opt/gnu-sed/libexec/gnubin/sed -i s/sed/sd/g "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.programs/sed1" Adding SEDINPLACE cmd: /usr/local/opt/gnu-sed/libexec/gnubin/sed -i Defined make macro "SEDINPLACE" to "/usr/local/opt/gnu-sed/libexec/gnubin/sed -i" Checking for program /usr/local/opt/ccache/libexec/mv...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/mv...not found Checking for program /usr/local/bin/mv...not found Checking for program /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mv...not found Checking for program /usr/local/sbin/mv...not found Checking for program /Users/jacobfaibussowitsch/.cargo/bin/mv...not found Checking for program /usr/bin/mv...not found Checking for program /usr/sbin/mv...not found Checking for program /bin/mv...found Defined make macro "MV" to "/bin/mv" Checking for program /usr/local/opt/ccache/libexec/cp...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/cp...not found Checking for program /usr/local/bin/cp...not found Checking for program /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/cp...not found Checking for program /usr/local/sbin/cp...not found Checking for program /Users/jacobfaibussowitsch/.cargo/bin/cp...not found Checking for program /usr/bin/cp...not found Checking for program /usr/sbin/cp...not found Checking for program /bin/cp...found Defined make macro "CP" to "/bin/cp" Checking for program /usr/local/opt/ccache/libexec/grep...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/grep...not found Checking for program /usr/local/bin/grep...not found Checking for program /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/grep...not found Checking for program /usr/local/sbin/grep...not found Checking for program /Users/jacobfaibussowitsch/.cargo/bin/grep...not found Checking for program /usr/bin/grep...found Defined make macro "GREP" to "/usr/bin/grep" Checking for program /usr/local/opt/ccache/libexec/rm...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/rm...not found Checking for program /usr/local/bin/rm...not found Checking for program /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/rm...not found Checking for program /usr/local/sbin/rm...not found Checking for program /Users/jacobfaibussowitsch/.cargo/bin/rm...not found Checking for program /usr/bin/rm...not found Checking for program /usr/sbin/rm...not found Checking for program /bin/rm...found Defined make macro "RM" to "/bin/rm -f" Checking for program /usr/local/opt/ccache/libexec/diff...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/diff...not found Checking for program /usr/local/bin/diff...not found Checking for program /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/diff...not found Checking for program /usr/local/sbin/diff...not found Checking for program /Users/jacobfaibussowitsch/.cargo/bin/diff...not found Checking for program /usr/bin/diff...found Executing: "/usr/bin/diff" -w "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.programs/diff1" "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.programs/diff2" Defined make macro "DIFF" to "/usr/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /Users/jacobfaibussowitsch/NoSync/petsc/lib/petsc/bin/win32fe/ps...not found Unable to find programs ['ps'] providing listing of the specific search path Warning accessing /usr/ucb gives errors: can only concatenate str (not "builtin_function_or_method") to str Warning accessing /usr/usb gives errors: can only concatenate str (not "builtin_function_or_method") to str Defined make macro "PYTHON" to "/usr/local/opt/python@3.9/bin/python3.9" Checking for program /usr/local/opt/ccache/libexec/m4...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/m4...not found Checking for program /usr/local/bin/m4...not found Checking for program /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/m4...not found Checking for program /usr/local/sbin/m4...not found Checking for program /Users/jacobfaibussowitsch/.cargo/bin/m4...not found Checking for program /usr/bin/m4...found Defined make macro "M4" to "/usr/bin/m4" child config.programs 3.013104 ============================================================================================= TESTING: consistencyChecks from config.packages.make(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.make(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default ============================================================================================= TESTING: configureMake from config.packages.make(config/BuildSystem/config/packages/make.py:96) Check Guesses for GNU make Executing: gmake --version stdout: GNU Make 4.3 Built for x86_64-apple-darwin19.2.0 Copyright (C) 1988-2020 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. Checking for program /usr/local/opt/ccache/libexec/gmake...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/gmake...not found Checking for program /usr/local/bin/gmake...found Defined make macro "MAKE" to "/usr/local/bin/gmake" Checking for program /usr/local/opt/ccache/libexec/make...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/make...not found Checking for program /usr/local/bin/make...not found Checking for program /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/make...not found Checking for program /usr/local/sbin/make...not found Checking for program /Users/jacobfaibussowitsch/.cargo/bin/make...not found Checking for program /usr/bin/make...found Defined make macro "MAKE_USER" to "make" ============================================================================================= TESTING: setupGNUMake from config.packages.make(config/BuildSystem/config/packages/make.py:150) Setup other GNU make stuff Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC})" and code [] Defined make rule "libcxx" with dependencies "${LIBNAME}(${OBJSCXX})" and code [] Defined make rule "libcu" with dependencies "${LIBNAME}(${OBJSCU})" and code [] Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} Defined make macro "OMAKE_PRINTDIR " to "/usr/local/bin/gmake --print-directory" Defined make macro "OMAKE" to "/usr/local/bin/gmake --no-print-directory" Defined make macro "MAKE_PAR_OUT_FLG" to "" ============================================================================================= TESTING: configureMakeNP from config.packages.make(config/BuildSystem/config/packages/make.py:197) check no of cores on the build machine [perhaps to do make '-j ncores'] module multiprocessing found 8 cores: using make_np = 7 Defined make macro "MAKE_NP" to "7" Defined make macro "MAKE_TEST_NP" to "4" Defined make macro "MAKE_LOAD" to "12.0" Defined make macro "NPMAX" to "8" child config.packages.make 0.033903 ============================================================================================= TESTING: consistencyChecks from config.packages.valgrind(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: configureLibrary from config.packages.valgrind(config/BuildSystem/config/package.py:895) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional valgrind Not checking for library in Compiler specific search VALGRIND: [] because no functions given to check for ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for optional headers [] in Compiler specific search VALGRIND: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in [] Found header files [] in [] Checking for headers ['valgrind/valgrind.h'] in Compiler specific search VALGRIND: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in [] Checking include with compiler flags var CPPFLAGS [] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 366 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/confdefs.h" 1 # 2 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conffix.h" 1 # 3 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'valgrind/valgrind.h' file not found #include ^~~~~~~~~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'valgrind/valgrind.h' file not found #include ^~~~~~~~~~~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'valgrind/valgrind.h' file not found#include ^~~~~~~~~~~~~~~~~~~~~1 error generated.: Not checking for library in Package specific search directory VALGRIND: [] because no functions given to check for ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for optional headers [] in Package specific search directory VALGRIND: ['/usr/local/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/usr/local/include'] Found header files [] in ['/usr/local/include'] Checking for headers ['valgrind/valgrind.h'] in Package specific search directory VALGRIND: ['/usr/local/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in ['/usr/local/include'] Checking include with compiler flags var CPPFLAGS ['/usr/local/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/usr/local/include /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 366 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/confdefs.h" 1 # 2 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conffix.h" 1 # 3 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'valgrind/valgrind.h' file not found #include ^~~~~~~~~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'valgrind/valgrind.h' file not found #include ^~~~~~~~~~~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'valgrind/valgrind.h' file not found#include ^~~~~~~~~~~~~~~~~~~~~1 error generated.: VALGRIND: DirPath not found.. skipping: /usr/local/lib64 Not checking for library in Package specific search directory VALGRIND: [] because no functions given to check for ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for optional headers [] in Package specific search directory VALGRIND: ['/opt/local/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/opt/local/include'] Found header files [] in ['/opt/local/include'] Checking for headers ['valgrind/valgrind.h'] in Package specific search directory VALGRIND: ['/opt/local/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in ['/opt/local/include'] Checking include with compiler flags var CPPFLAGS ['/opt/local/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: clang -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/opt/local/include /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 366 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/confdefs.h" 1 # 2 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conffix.h" 1 # 3 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'valgrind/valgrind.h' file not found #include ^~~~~~~~~~~~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'valgrind/valgrind.h' file not found #include ^~~~~~~~~~~~~~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'valgrind/valgrind.h' file not found#include ^~~~~~~~~~~~~~~~~~~~~1 error generated.: VALGRIND: DirPath not found.. skipping: /opt/local/lib64 Executing: uname -s stdout: Darwin child config.packages.valgrind 0.137057 ============================================================================================= TESTING: consistencyChecks from config.packages.thrust(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.thrust(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.thrust 0.001434 ============================================================================================= TESTING: consistencyChecks from config.packages.cuda(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.cuda(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.cuda 0.000867 ============================================================================================= TESTING: consistencyChecks from config.packages.OpenMPI(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.OpenMPI(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.OpenMPI 0.001218 Executing: uname -s stdout: Darwin ============================================================================================= TESTING: consistencyChecks from config.packages.MPICH(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.MPICH(config/BuildSystem/config/package.py:870) ============================================================================================= TESTING: configureLibrary from config.packages.MPICH(config/BuildSystem/config/package.py:895) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional MPICH Executing: uname -s stdout: Darwin Looking for MPICH at git.mpich, hg.mpich or a directory starting with ['mpich'] Found a copy of MPICH in mpich-3.3.2 Detected Darwin/MacOSX Catalina OS Executing: clang --help | head -n 500 Detected CLANG compiler Executing: gfortran -v Executing: gfortran -V Executing: gfortran --version stdout: GNU Fortran (GCC) 10.2.0 Copyright (C) 2020 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Detected GFortran100plus compiler Executing: gfortran -V Executing: gfortran --version stdout: GNU Fortran (GCC) 10.2.0 Copyright (C) 2020 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Detected GFortran100plus compiler Executing: gfortran -V Executing: gfortran --version stdout: GNU Fortran (GCC) 10.2.0 Copyright (C) 2020 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Detected GFortran100plus compiler Removing configure arguments ['--disable-f90', '--enable-f90'] Removing configure arguments ['F90="gfortran"', 'F90FLAGS="-ffree-line-length-0 -g -fallow-argument-mismatch"'] Makefile /Users/jacobfaibussowitsch/NoSync/petsc/master-arch-darwin-c-debug/lib/petsc/conf/pkg.conf.mpich has correct checksum Do not need to rebuild MPICH Deleting "CC" Deleting "CXX" Deleting "FC" ============================================================================================= TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1903) ============================================================================================= TESTING: checkEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1933) ============================================================================================= TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:1873) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ============================================================================================= TESTING: requireMpiLdPath from config.setCompilers(config/BuildSystem/config/setCompilers.py:1894) OpenMPI wrappers require LD_LIBRARY_PATH set ============================================================================================= TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:514) Initialize the compiler and linker flags Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Initialized HIPCCFLAGS to Initialized HIPCCFLAGS to Initialized LDFLAGS to Initialized SYCLCXXFLAGS to Initialized SYCLCXXFLAGS to Initialized LDFLAGS to Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Initialized CPPFLAGS to Initialized FPPFLAGS to Initialized CUDAPPFLAGS to -Wno-deprecated-gpu-targets Initialized CXXPPFLAGS to Initialized HIPPPFLAGS to -Wno-deprecated-gpu-targets Initialized SYCLPPFLAGS to -Wno-deprecated-gpu-targets Initialized CC_LINKER_FLAGS to ['-Wl,-bind_at_load', '-Wl,-multiply_defined,suppress', '-Wl,-multiply_defined -Wl,suppress', '-Wl,-commons,use_dylibs', '-Wl,-search_paths_first', '-Wl,-no_compact_unwind'] Initialized CXX_LINKER_FLAGS to ['-Wl,-bind_at_load', '-Wl,-multiply_defined,suppress', '-Wl,-multiply_defined -Wl,suppress', '-Wl,-commons,use_dylibs', '-Wl,-search_paths_first', '-Wl,-no_compact_unwind'] Initialized FC_LINKER_FLAGS to ['-Wl,-bind_at_load', '-Wl,-multiply_defined,suppress', '-Wl,-multiply_defined -Wl,suppress', '-Wl,-commons,use_dylibs', '-Wl,-search_paths_first', '-Wl,-no_compact_unwind'] Initialized CUDAC_LINKER_FLAGS to [] Initialized HIPCC_LINKER_FLAGS to [] Initialized SYCLCXX_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ============================================================================================= TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:689) Locate a functional C compiler Checking for program /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc...found Defined make macro "CC" to "/Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc" ===== Checking compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lpetsc-ufod4vtr9mqHvKIQiVAm clang: error: linker command failed with exit code 1 (use -v to see invocation) ======== Checking running linked program ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o Testing executable /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest to see if it can be run Executing: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc --version stdout: Apple clang version 12.0.0 (clang-1200.0.32.28) Target: x86_64-apple-darwin20.2.0 Thread model: posix InstalledDir: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin Since MPI c compiler starts with mpi, force searches for other compilers to only look for MPI compilers ============================================================================================= TESTING: checkCPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:728) Locate a functional C preprocessor Checking for program /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc...found Defined make macro "CPP" to "/Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : ============================================================================================= TESTING: checkCUDACompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:764) Locate a functional CUDA compiler Checking for program /usr/local/opt/ccache/libexec/nvcc...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/nvcc...not found Checking for program /usr/local/bin/nvcc...not found Checking for program /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/nvcc...not found Checking for program /usr/local/sbin/nvcc...not found Checking for program /Users/jacobfaibussowitsch/.cargo/bin/nvcc...not found Checking for program /usr/bin/nvcc...not found Checking for program /usr/sbin/nvcc...not found Checking for program /bin/nvcc...not found Checking for program /sbin/nvcc...not found Checking for program /usr/X11R6/bin/nvcc...not found Checking for program /opt/local/bin/nvcc...not found Checking for program /Users/jacobfaibussowitsch/NoSync/petsc/lib/petsc/bin/win32fe/nvcc...not found Checking for program /Developer/NVIDIA/CUDA-6.5/bin/nvcc...not found Checking for program /Users/jacobfaibussowitsch/NoSync/petsc/lib/petsc/bin/win32fe/nvcc...not found Unable to find programs ['nvcc'] providing listing of the specific search path Warning accessing /Developer/NVIDIA/CUDA-6.5/bin gives errors: can only concatenate str (not "builtin_function_or_method") to str Checking for program /usr/local/cuda/bin/nvcc...not found Checking for program /Users/jacobfaibussowitsch/NoSync/petsc/lib/petsc/bin/win32fe/nvcc...not found Unable to find programs ['nvcc'] providing listing of the specific search path Warning accessing /usr/local/cuda/bin gives errors: can only concatenate str (not "builtin_function_or_method") to str ============================================================================================= TESTING: checkCUDAPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:804) Locate a functional CUDA preprocessor ============================================================================================= TESTING: checkHIPCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:838) Locate a functional HIP compiler Checking for program /usr/local/opt/ccache/libexec/hipcc...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/hipcc...not found Checking for program /usr/local/bin/hipcc...not found Checking for program /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/hipcc...not found Checking for program /usr/local/sbin/hipcc...not found Checking for program /Users/jacobfaibussowitsch/.cargo/bin/hipcc...not found Checking for program /usr/bin/hipcc...not found Checking for program /usr/sbin/hipcc...not found Checking for program /bin/hipcc...not found Checking for program /sbin/hipcc...not found Checking for program /usr/X11R6/bin/hipcc...not found Checking for program /opt/local/bin/hipcc...not found Checking for program /Users/jacobfaibussowitsch/NoSync/petsc/lib/petsc/bin/win32fe/hipcc...not found Checking for program /usr/local/opt/ccache/libexec/opt/rocm/bin/hipcc...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/opt/rocm/bin/hipcc...not found Checking for program /usr/local/bin/opt/rocm/bin/hipcc...not found Checking for program /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/local/sbin/opt/rocm/bin/hipcc...not found Checking for program /Users/jacobfaibussowitsch/.cargo/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/sbin/opt/rocm/bin/hipcc...not found Checking for program /bin/opt/rocm/bin/hipcc...not found Checking for program /sbin/opt/rocm/bin/hipcc...not found Checking for program /usr/X11R6/bin/opt/rocm/bin/hipcc...not found Checking for program /opt/local/bin/opt/rocm/bin/hipcc...not found Checking for program /Users/jacobfaibussowitsch/NoSync/petsc/lib/petsc/bin/win32fe/opt/rocm/bin/hipcc...not found ============================================================================================= TESTING: checkHIPPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:874) Placeholder for now ============================================================================================= TESTING: checkSYCLCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:895) Locate a functional SYCL compiler ============================================================================================= TESTING: checkSYCLPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:921) Placeholder for now ============================================================================================= TESTING: checkCxxCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:1008) Locate a functional Cxx compiler Checking for program /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx...found Defined make macro "CXX" to "/Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx" ===== Checking compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lpetsc-ufod4vtr9mqHvKIQiVAm clang: error: linker command failed with exit code 1 (use -v to see invocation) ======== Checking running linked program ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o Testing executable /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest to see if it can be run Executing: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx --version stdout: Apple clang version 12.0.0 (clang-1200.0.32.28) Target: x86_64-apple-darwin20.2.0 Thread model: posix InstalledDir: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin ============================================================================================= TESTING: checkCxxPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:1049) Locate a functional Cxx preprocessor Checking for program /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx...found Defined make macro "CXXPP" to "/Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc Preprocess stderr before filtering: : Preprocess stderr after filtering: : ============================================================================================= TESTING: checkFortranCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:1148) Locate a functional Fortran compiler Checking for program /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90...found Defined make macro "FC" to "/Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90" ===== Checking compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.F90 Successful compile: Source: program main end ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status ======== Checking running linked program ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o Testing executable /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest to see if it can be run Executing: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 --version stdout: GNU Fortran (GCC) 10.2.0 Copyright (C) 2020 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. ============================================================================================= TESTING: checkFortranPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:1185) Locate a functional Fortran preprocessor Checking for program /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90...found Defined make macro "FPP" to "/Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -E" Deleting "FPP" Checking for program /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90...found Defined make macro "FPP" to "/Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 --use cpp32" Deleting "FPP" ============================================================================================= TESTING: checkFortranComments from config.setCompilers(config/BuildSystem/config/setCompilers.py:1207) Make sure fortran comment "!" works ===== Checking compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.F90 Successful compile: Source: program main ! comment end Fortran comments can use ! in column 1 ============================================================================================= TESTING: checkLargeFileIO from config.setCompilers(config/BuildSystem/config/setCompilers.py:1342) ============================================================================================= TESTING: checkArchiver from config.setCompilers(config/BuildSystem/config/setCompilers.py:1441) Check that the archiver exists and can make a library usable by the compiler Executing: ar -V Executing: ar -V Defined make macro "FAST_AR_FLAGS" to "Scq" ===== Checking compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/local/opt/ccache/libexec/ar...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/ar...not found Checking for program /usr/local/sbin/ar...not found Checking for program /Users/jacobfaibussowitsch/.cargo/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/local/opt/ccache/libexec/ranlib...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/ranlib...not found Checking for program /usr/local/sbin/ranlib...not found Checking for program /Users/jacobfaibussowitsch/.cargo/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" Executing: /usr/bin/ar cr /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/libconf1.a /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conf1.o Executing: /usr/bin/ranlib -c /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/libconf1.a ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c:6:26: warning: if statement has empty body [-Wempty-body] int b = foo(1); if (b); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c:6:26: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -L/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -lconf1 Defined make macro "AR_FLAGS" to "cr" Defined make macro "AR_LIB_SUFFIX" to "a" ============================================================================================= TESTING: checkSharedLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1556) Check that the linker can produce shared libraries Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS Checking shared linker /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc using flags ['-dynamiclib -single_module', '-undefined dynamic_lookup', '-multiply_defined suppress', '-no_compact_unwind'] Checking for program /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc...found Defined make macro "LD_SHARED" to "/Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc" Trying C compiler flag Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -dynamiclib -single_module -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o Valid C linker flag -dynamiclib -single_module Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -undefined dynamic_lookup -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o Valid C linker flag -undefined dynamic_lookup Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -multiply_defined suppress -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o Valid C linker flag -multiply_defined suppress Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 1 stderr: clang: error: unknown argument: '-no_compact_unwind' Rejecting linker flag -no_compact_unwind due to nonzero status from link ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(void); int main() { int ret = foo(); if (ret) {} ; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -L/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -lconftest Using shared linker /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc with flags ['-dynamiclib -single_module', '-undefined dynamic_lookup', '-multiply_defined suppress'] and library extension dylib Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS ============================================================================================= TESTING: checkLinkerMac from config.setCompilers(config/BuildSystem/config/setCompilers.py:1630) Tests some Apple Mac specific linker flags Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-bind_at_load -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o Valid C linker flag -Wl,-bind_at_load Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o Valid C linker flag -Wl,-multiply_defined,suppress Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-multiply_defined -Wl,suppress -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o Valid C linker flag -Wl,-multiply_defined -Wl,suppress Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-commons,use_dylibs -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o Valid C linker flag -Wl,-commons,use_dylibs Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-search_paths_first -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o Valid C linker flag -Wl,-search_paths_first Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o Valid C linker flag -Wl,-no_compact_unwind Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-bind_at_load -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-bind_at_load Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-multiply_defined,suppress Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-multiply_defined -Wl,suppress -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-multiply_defined -Wl,suppress Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-commons,use_dylibs -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-commons,use_dylibs Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-search_paths_first -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-search_paths_first Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-no_compact_unwind Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-bind_at_load -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o Valid FC linker flag -Wl,-bind_at_load Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o Valid FC linker flag -Wl,-multiply_defined,suppress Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-multiply_defined -Wl,suppress -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o Valid FC linker flag -Wl,-multiply_defined -Wl,suppress Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-commons,use_dylibs -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o Valid FC linker flag -Wl,-commons,use_dylibs Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-search_paths_first -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o Valid FC linker flag -Wl,-search_paths_first Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o Valid FC linker flag -Wl,-no_compact_unwind Executing: uname -s stdout: Darwin ============================================================================================= TESTING: checkPIC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1285) Determine the PIC option for each compiler Trying Cxx for PIC code without any compiler flag Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o Accepted Cxx PIC code without compiler flag Trying FC for PIC code without any compiler flag Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.F90 Successful compile: Source: program main end ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.F90 Successful compile: Source: function foo(a) real:: a,x,bar common /xx/ x x=a foo = bar(x) end Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o Accepted FC PIC code without compiler flag ============================================================================================= TESTING: checkSharedLinkerPaths from config.setCompilers(config/BuildSystem/config/setCompilers.py:1668) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -V Trying C linker flag -Wl,-rpath, Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petsc -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o Valid C linker flag -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petsc Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -V Trying Cxx linker flag -Wl,-rpath, Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petsc -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petsc Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -V Trying FC linker flag -Wl,-rpath, Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petsc -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o Valid FC linker flag -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petsc ============================================================================================= TESTING: checkLibC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1707) Test whether we need to explicitly include libc in shared linking - Mac OSX requires an explicit reference to libc for shared linking ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {void *chunk = malloc(31); free(chunk); return 0;} Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o Shared linking does not require an explicit libc reference ============================================================================================= TESTING: checkDynamicLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1753) Check that the linker can dynamicaly load shared libraries Checking for header: dlfcn.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_DLFCN_H" to "1" Checking for functions [dlopen dlsym dlclose] in library ['dl'] [] ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } char dlsym(); static void _check_dlsym() { dlsym(); } char dlclose(); static void _check_dlclose() { dlclose(); } int main() { _check_dlopen(); _check_dlsym(); _check_dlclose();; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -ldl Defined "HAVE_LIBDL" to "1" Adding ['dl'] to LIBS Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS Checking dynamic linker /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc using flags ['-dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress'] Checking for program /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc...found Defined make macro "DYNAMICLINKER" to "/Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc" Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -ldl Valid C linker flag -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("test");return 0;} Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -ldl ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { void *handle = dlopen("/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/libconftest.dylib", 0); int (*foo)(void) = (int (*)(void)) dlsym(handle, "foo"); if (!foo) { printf("Could not load symbol\n"); return -1; } if ((*foo)()) { printf("Invalid return from foo()\n"); return -1; } if (dlclose(handle)) { printf("Could not close library\n"); return -1; } ; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -ldl Using dynamic linker /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc with flags ['-dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress'] and library extension dylib ============================================================================================= TESTING: output from config.setCompilers(config/BuildSystem/config/setCompilers.py:1802) Output module data as defines and substitutions Substituting "CC" with "/Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc" Substituting "CFLAGS" with "" Defined make macro "CC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "CPP" with "/Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -E" Substituting "CPPFLAGS" with "" Substituting "CXX" with "/Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx" Substituting "CXX_CXXFLAGS" with "" Substituting "CXXFLAGS" with "" Substituting "CXX_LINKER_SLFLAG" with "-Wl,-rpath," Substituting "CXXPP" with "/Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -E" Substituting "CXXPPFLAGS" with "" Substituting "FC" with "/Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90" Substituting "FFLAGS" with "" Defined make macro "FC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "LDFLAGS" with "" Substituting "LIBS" with "-ldl " Substituting "SHARED_LIBRARY_FLAG" with "-dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress" Defined make macro "C_VERSION" to "Apple clang version 12.0.0 (clang-1200.0.32.28)" Defined make macro "MPICC_SHOW" to "clang -fstack-protector -fno-stack-check -Qunused-arguments -g3 -Wno-implicit-function-declaration -Wl,-flat_namespace -Wl,-commons,use_dylibs -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lmpi -lpmpi" Defined make macro "MPICC_SHOW" to "clang -fstack-protector -fno-stack-check -Qunused-arguments -g3 -Wno-implicit-function-declaration -Wl,-flat_namespace -Wl,-commons,use_dylibs -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lmpi -lpmpi" Defined make macro "Cxx_VERSION" to "Apple clang version 12.0.0 (clang-1200.0.32.28)" Defined make macro "MPICXX_SHOW" to "clang++ -fstack-protector -fno-stack-check -g -std=c++14 -Wl,-flat_namespace -Wl,-commons,use_dylibs -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lmpicxx -lmpi -lpmpi" Defined make macro "MPICXX_SHOW" to "clang++ -fstack-protector -fno-stack-check -g -std=c++14 -Wl,-flat_namespace -Wl,-commons,use_dylibs -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lmpicxx -lmpi -lpmpi" Defined make macro "FC_VERSION" to "GNU Fortran (GCC) 10.2.0" Defined make macro "MPIFC_SHOW" to "gfortran -ffree-line-length-0 -g -fallow-argument-mismatch -Wl,-flat_namespace -Wl,-commons,use_dylibs -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lmpifort -lmpi -lpmpi" Defined make macro "MPIFC_SHOW" to "gfortran -ffree-line-length-0 -g -fallow-argument-mismatch -Wl,-flat_namespace -Wl,-commons,use_dylibs -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lmpifort -lmpi -lpmpi" ============================================================================================= TESTING: configureCompilerFlags from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:81) Get the default compiler flags Trying C compiler flag -Wall Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -Wall /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wall Trying C compiler flag -Wwrite-strings Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -Wall -Wwrite-strings /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wwrite-strings Trying C compiler flag -Wno-strict-aliasing Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wno-strict-aliasing Trying C compiler flag -Wno-unknown-pragmas Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wno-unknown-pragmas Trying C compiler flag -fstack-protector Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fstack-protector Trying C compiler flag -fno-stack-check Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fno-stack-check Trying C compiler flag -mfp16-format=ieee Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -mfp16-format=ieee /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 1 stderr: clang: error: unknown argument: '-mfp16-format=ieee' Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -mfp16-format=ieee due to nonzero status from link Rejecting compiler flag -mfp16-format=ieee due to clang: error: unknown argument: '-mfp16-format=ieee' PETSc Error: No output file produced Rejected C compiler flag -mfp16-format=ieee Trying C compiler flag -Qunused-arguments Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Qunused-arguments Trying C compiler flag -fvisibility=hidden Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fvisibility=hidden Trying C compiler flag -g3 Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -g3 Trying Cxx compiler flag -Wall Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -Wall /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wall Trying Cxx compiler flag -Wwrite-strings Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -Wall -Wwrite-strings /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wwrite-strings Trying Cxx compiler flag -Wno-strict-aliasing Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wno-strict-aliasing Trying Cxx compiler flag -Wno-unknown-pragmas Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wno-unknown-pragmas Trying Cxx compiler flag -fstack-protector Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -fstack-protector Trying Cxx compiler flag -fno-stack-check Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -fno-stack-check Trying Cxx compiler flag -fvisibility=hidden Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -fvisibility=hidden Trying Cxx compiler flag -g Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -g Trying FC compiler flag -Wall Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -Wall /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag -Wall Trying FC compiler flag -ffree-line-length-0 Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -Wall -ffree-line-length-0 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag -ffree-line-length-0 Trying FC compiler flag -Wno-unused-dummy-argument Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag -Wno-unused-dummy-argument Trying FC compiler flag -g Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag -g Accepted C99 compile flag: Defined make macro "C_DEPFLAGS" to "-MMD -MP" Defined make macro "CXX_DEPFLAGS" to "-MMD -MP" Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc --help | head -n 20 stdout: OVERVIEW: clang LLVM compiler USAGE: clang [options] file... OPTIONS: -### Print (but do not run) the commands to run for this compilation --analyzer-output Static analyzer report output format (html|plist|plist-multi-file|plist-html|sarif|text). --analyze Run the static analyzer -arcmt-migrate-emit-errors Emit ARC errors even if the migrator can fix them -arcmt-migrate-report-output Output path for the plist report -B Add to search path for binaries and object files used implicitly -CC Include comments from within macros in preprocessed output -cl-denorms-are-zero OpenCL only. Allow denormals to be flushed to zero. -cl-fast-relaxed-math OpenCL only. Sets -cl-finite-math-only and -cl-unsafe-math-optimizations, and defines __FAST_RELAXED_MATH__. -cl-finite-math-only OpenCL only. Allow floating-point optimizations that assume arguments and results are not NaNs or +-Inf. -cl-fp32-correctly-rounded-divide-sqrt OpenCL only. Specify that single precision floating-point divide and sqrt used in the program source are correctly rounded. ============================================================================================= TESTING: checkC99Flag from config.compilers(config/BuildSystem/config/compilers.py:1416) Check for -std=c99 or equivalent flag Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { float x[2],y; y = FLT_ROUNDS; // c++ comment int j = 2; for (int i=0; i<2; i++){ x[i] = i*j*y; } ; return 0; } ============================================================================================= TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:156) Check for the C/CXX restrict keyword Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -V ===== Checking compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.c:5:20: warning: unused variable 'x' [-Wunused-variable] float * __restrict x;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set C restrict keyword to __restrict Defined "C_RESTRICT" to "__restrict" ============================================================================================= TESTING: checkCFormatting from config.compilers(config/BuildSystem/config/compilers.py:411) Activate format string checking if using the GNU compilers ============================================================================================= TESTING: checkCInline from config.compilers(config/BuildSystem/config/compilers.py:126) Check for C inline keyword ===== Checking compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set C Inline keyword to inline Defined "C_INLINE" to "inline" ============================================================================================= TESTING: checkDynamicLoadFlag from config.compilers(config/BuildSystem/config/compilers.py:422) Checks that dlopen() takes RTLD_XXX, and defines PETSC_HAVE_RTLD_XXX if it does ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LAZY);dlopen(libname, RTLD_NOW);dlopen(libname, RTLD_LOCAL);dlopen(libname, RTLD_GLOBAL); ; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_LAZY" to "1" Defined "HAVE_RTLD_NOW" to "1" Defined "HAVE_RTLD_LOCAL" to "1" Defined "HAVE_RTLD_GLOBAL" to "1" ============================================================================================= TESTING: checkCLibraries from config.compilers(config/BuildSystem/config/compilers.py:220) Determines the libraries needed to link with C compiled code ===== Checking compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void asub(void) {char s[16];printf("testing %s",s);} ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.F90 Successful compile: Source: program main print*,'testing' stop end Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/confc.o -ldl Possible ERROR while running linker: stderr: ld: warning: object file (/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/confc.o) was built for newer macOS version (11.0) than being linked (10.16) C libraries are not needed when using Fortran linker ===== Checking compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void asub(void) {char s[16];printf("testing %s",s);} ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/confc.o -ldl C libraries are not needed when using C++ linker ============================================================================================= TESTING: checkDependencyGenerationFlag from config.compilers(config/BuildSystem/config/compilers.py:1367) Check if -MMD works for dependency generation, and add it if it does Trying C compiler flag -MMD -MP Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -MMD -MP /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Trying Cxx compiler flag -MMD -MP Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -MMD -MP /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx --help | head -n 20 stdout: OVERVIEW: clang LLVM compiler USAGE: clang [options] file... OPTIONS: -### Print (but do not run) the commands to run for this compilation --analyzer-output Static analyzer report output format (html|plist|plist-multi-file|plist-html|sarif|text). --analyze Run the static analyzer -arcmt-migrate-emit-errors Emit ARC errors even if the migrator can fix them -arcmt-migrate-report-output Output path for the plist report -B Add to search path for binaries and object files used implicitly -CC Include comments from within macros in preprocessed output -cl-denorms-are-zero OpenCL only. Allow denormals to be flushed to zero. -cl-fast-relaxed-math OpenCL only. Sets -cl-finite-math-only and -cl-unsafe-math-optimizations, and defines __FAST_RELAXED_MATH__. -cl-finite-math-only OpenCL only. Allow floating-point optimizations that assume arguments and results are not NaNs or +-Inf. -cl-fp32-correctly-rounded-divide-sqrt OpenCL only. Specify that single precision floating-point divide and sqrt used in the program source are correctly rounded. ============================================================================================= TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:156) Check for the C/CXX restrict keyword Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -V ===== Checking compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.cc Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.cc:5:20: warning: unused variable 'x' [-Wunused-variable] float * __restrict x;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set Cxx restrict keyword to __restrict Defined "CXX_RESTRICT" to "__restrict" ============================================================================================= TESTING: checkCxxDialect from config.compilers(config/BuildSystem/config/compilers.py:469) Determine the Cxx dialect supported by the compiler [and correspoding compiler option - if any]. -with-cxx-dialect can take options: auto: use highest dialect configure can determine cxx17: [future?] cxx14: gnu++14 or c++14 cxx11: gnu++11 or c++11 0: disable CxxDialect check and use compiler default checkCxxDialect: checking CXX14 with flag: Defined "HAVE_CXX_DIALECT_CXX14" to "1" Defined "HAVE_CXX_DIALECT_CXX11" to "1" Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc:18:42: warning: unused variable 'I' [-Wunused-variable] constexpr std::complex I(0.0,1.0); ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include template constexpr T Cubed( T x ) { return x*x*x; } int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); std::cout << x; constexpr std::complex I(0.0,1.0); auto lambda = [](auto x, auto y) {return x + y;}; return lambda(3,4); ; return 0; } ============================================================================================= TESTING: checkCxxOptionalExtensions from config.compilers(config/BuildSystem/config/compilers.py:441) Check whether the C++ compiler (IBM xlC, OSF5) need special flag for .c files which contain C++ Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: clang: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is deprecated [-Wdeprecated] /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c:5:22: warning: private field 'i' is not used [-Wunused-private-field] class somename { int i; };; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } ============================================================================================= TESTING: checkCxxInline from config.compilers(config/BuildSystem/config/compilers.py:141) Check for C++ inline keyword ===== Checking compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set Cxx Inline keyword to inline Defined "CXX_INLINE" to "inline" ============================================================================================= TESTING: checkCxxLibraries from config.compilers(config/BuildSystem/config/compilers.py:553) Determines the libraries needed to link with C++ from C and Fortran ===== Checking compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/confc.o -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "std::__1::locale::use_facet(std::__1::locale::id&) const", referenced from: std::__1::ctype const& std::__1::use_facet >(std::__1::locale const&) in confc.o "std::__1::ios_base::getloc() const", referenced from: std::__1::basic_ios >::widen(char) const in confc.o "std::__1::basic_string, std::__1::allocator >::__init(unsigned long, char)", referenced from: std::__1::basic_string, std::__1::allocator >::basic_string(unsigned long, char) in confc.o "std::__1::basic_string, std::__1::allocator >::~basic_string()", referenced from: std::__1::ostreambuf_iterator > std::__1::__pad_and_output >(std::__1::ostreambuf_iterator >, char const*, char const*, char const*, std::__1::ios_base&, char) in confc.o "std::__1::basic_ostream >::sentry::sentry(std::__1::basic_ostream >&)", referenced from: std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "std::__1::basic_ostream >::sentry::~sentry()", referenced from: std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "std::__1::cout", referenced from: asub() in confc.o "std::__1::ctype::id", referenced from: std::__1::ctype const& std::__1::use_facet >(std::__1::locale const&) in confc.o "std::__1::locale::~locale()", referenced from: std::__1::basic_ios >::widen(char) const in confc.o "std::__1::ios_base::__set_badbit_and_consider_rethrow()", referenced from: std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "std::__1::ios_base::clear(unsigned int)", referenced from: std::__1::ios_base::setstate(unsigned int) in confc.o "std::terminate()", referenced from: ___clang_call_terminate in confc.o "typeinfo for int", referenced from: asub() in confc.o GCC_except_table0 in confc.o "operator delete(void*)", referenced from: std::__1::_DeallocateCaller::__do_call(void*) in confc.o "___cxa_allocate_exception", referenced from: asub() in confc.o "___cxa_begin_catch", referenced from: asub() in confc.o ___clang_call_terminate in confc.o std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "___cxa_end_catch", referenced from: asub() in confc.o std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o "___cxa_throw", referenced from: asub() in confc.o "___gxx_personality_v0", referenced from: asub() in confc.o std::__1::__vector_base >::__vector_base() in confc.o std::__1::__vector_base >::__destruct_at_end(int*) in confc.o std::__1::allocator::deallocate(int*, unsigned long) in confc.o std::__1::basic_ostream >& std::__1::__put_character_sequence >(std::__1::basic_ostream >&, char const*, unsigned long) in confc.o std::__1::ostreambuf_iterator > std::__1::__pad_and_output >(std::__1::ostreambuf_iterator >, char const*, char const*, char const*, std::__1::ios_base&, char) in confc.o std::__1::ostreambuf_iterator >::ostreambuf_iterator(std::__1::basic_ostream >&) in confc.o ... ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc --help | head -n 500 Detected CLANG compiler ===== Checking compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/confc.o -lc++ -ldl compilers: C++ requires -lc++ to link with C compiler ===== Checking compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.F90 Successful compile: Source: program main print*,'testing' stop end Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/confc.o -lc++ -ldl Possible ERROR while running linker: stderr: ld: warning: object file (/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/confc.o) was built for newer macOS version (11.0) than being linked (10.16) C++ libraries are not needed when using FC linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -V ============================================================================================= TESTING: checkFortranNameMangling from config.compilers(config/BuildSystem/config/compilers.py:860) Checks Fortran name mangling, and defines HAVE_FORTRAN_UNDERSCORE, HAVE_FORTRAN_NOUNDERSCORE, HAVE_FORTRAN_CAPS Testing Fortran mangling type underscore with code void d1chk_(void){return;} ===== Checking compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1chk_(void){return;} ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.F90 Successful compile: Source: program main call d1chk() end Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/confc.o -lc++ -ldl Possible ERROR while running linker: stderr: ld: warning: object file (/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/confc.o) was built for newer macOS version (11.0) than being linked (10.16) compilers: Fortran name mangling is underscore Defined "HAVE_FORTRAN_UNDERSCORE" to "1" Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 --version stdout: GNU Fortran (GCC) 10.2.0 Copyright (C) 2020 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Detected GFortran8plus compiler Defined "FORTRAN_CHARLEN_T" to "size_t" ============================================================================================= TESTING: checkFortranNameManglingDouble from config.compilers(config/BuildSystem/config/compilers.py:898) Checks if symbols containing an underscore append an extra underscore, and defines HAVE_FORTRAN_UNDERSCORE_UNDERSCORE if necessary ===== Checking compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1_chk__(void){return;} ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.F90 Successful compile: Source: program main call d1_chk() end Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/confc.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: ld: warning: object file (/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/confc.o) was built for newer macOS version (11.0) than being linked (10.16) Undefined symbols for architecture x86_64: "_d1_chk_", referenced from: _MAIN__ in conftest.o (maybe you meant: _d1_chk__) ld: symbol(s) not found for architecture x86_64 collect2: error: ld returned 1 exit status ============================================================================================= TESTING: checkFortranLibraries from config.compilers(config/BuildSystem/config/compilers.py:908) Substitutes for FLIBS the libraries needed to link with Fortran This macro is intended to be used in those situations when it is necessary to mix, e.g. C++ and Fortran 77, source code into a single program or shared library. For example, if object files from a C++ and Fortran 77 compiler must be linked together, then the C++ compiler/linker must be used for linking (since special C++-ish things need to happen at link time like calling global constructors, instantiating templates, enabling exception support, etc.). However, the Fortran 77 intrinsic and run-time libraries must be linked in as well, but the C++ compiler/linker does not know how to add these Fortran 77 libraries. This code was translated from the autoconf macro which was packaged in its current form by Matthew D. Langston . However, nearly all of this macro came from the OCTAVE_FLIBS macro in octave-2.0.13/aclocal.m4, and full credit should go to John W. Eaton for writing this extremely useful macro. ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.F90 Successful compile: Source: program main #include call MPI_Allreduce() end Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o -lc++ -ldl ===== Checking compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.F90 Successful compile: Source: subroutine asub() print*,'testing' call MPI_Allreduce() return end ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern void asub_(void); int main(int argc,char **args) { asub_(); return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/confc.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_mpi_allreduce_", referenced from: _asub_ in confc.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Fortran code cannot directly be linked with C linker, therefore will determine needed Fortran libraries Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.F90 Successful compile: Source: program main end Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest -v -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o -lc++ -ldl stdout: mpifort for MPICH version 3.3.2 Possible ERROR while running linker: stdout: mpifort for MPICH version 3.3.2stderr: Driving: gfortran -ffree-line-length-0 -g -fallow-argument-mismatch -Wl,-flat_namespace -Wl,-commons,use_dylibs -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest -v -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o -lc++ -ldl -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lmpifort -lmpi -lpmpi -mmacosx-version-min=10.16.0 -asm_macosx_version_min=10.16 -l gfortran -shared-libgcc Using built-in specs. COLLECT_GCC=gfortran COLLECT_LTO_WRAPPER=/usr/local/gfortran/libexec/gcc/x86_64-apple-darwin19/10.2.0/lto-wrapper Target: x86_64-apple-darwin19 Configured with: ../gcc-10.2.0/configure --prefix=/usr/local/gfortran --with-gmp=/Users/fx/devel/gcc/build_package/deps --with-isl=/Users/fx/devel/gcc/build_package/deps --enable-languages=c,c++,fortran,objc,obj-c++ --build=x86_64-apple-darwin19 --with-native-system-header-dir=/usr/include --with-sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk Thread model: posix Supported LTO compression algorithms: zlib gcc version 10.2.0 (GCC) Reading specs from /usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0/../../../libgfortran.spec rename spec lib to liborig COLLECT_GCC_OPTIONS='-ffree-line-length-0' '-g' '-fallow-argument-mismatch' '-o' '/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest' '-v' '-Wall' '-ffree-line-length-0' '-Wno-unused-dummy-argument' '-g' '-I' '/Users/jacobfaibussowitsch/NoSync/petscpackages/include' '-I' '/Users/jacobfaibussowitsch/NoSync/petscpackages/include' '-L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib' '-mmacosx-version-min=10.16.0' '-asm_macosx_version_min=10.16' '-shared-libgcc' '-mtune=core2' COMPILER_PATH=/usr/local/gfortran/libexec/gcc/x86_64-apple-darwin19/10.2.0/:/usr/local/gfortran/libexec/gcc/x86_64-apple-darwin19/10.2.0/:/usr/local/gfortran/libexec/gcc/x86_64-apple-darwin19/:/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0/:/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/ LIBRARY_PATH=/usr/local/lib/:/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0/:/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0/../../../ COLLECT_GCC_OPTIONS='-ffree-line-length-0' '-g' '-fallow-argument-mismatch' '-o' '/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest' '-v' '-Wall' '-ffree-line-length-0' '-Wno-unused-dummy-argument' '-g' '-I' '/Users/jacobfaibussowitsch/NoSync/petscpackages/include' '-I' '/Users/jacobfaibussowitsch/NoSync/petscpackages/include' '-L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib' '-mmacosx-version-min=10.16.0' '-asm_macosx_version_min=10.16' '-shared-libgcc' '-mtune=core2' /usr/local/gfortran/libexec/gcc/x86_64-apple-darwin19/10.2.0/collect2 -syslibroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/ -dynamic -arch x86_64 -macosx_version_min 10.16.0 -weak_reference_mismatches non-weak -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/usr/local/lib -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0/../../.. -flat_namespace -commons use_dylibs -bind_at_load -multiply_defined suppress -multiply_defined suppress -commons use_dylibs -search_paths_first -no_compact_unwind -bind_at_load -multiply_defined suppress -multiply_defined suppress -commons use_dylibs -search_paths_first -no_compact_unwind /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o -lc++ -lmpifort -lmpi -lpmpi -lgfortran -lSystem -lgcc_ext.10.5 -lgcc -lquadmath -lm -lgcc_ext.10.5 -lgcc -lSystem -no_compact_unwind -v -idsym collect2 version 10.2.0 /usr/bin/ld -syslibroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/ -dynamic -arch x86_64 -macosx_version_min 10.16.0 -weak_reference_mismatches non-weak -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/usr/local/lib -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0/../../.. -flat_namespace -commons use_dylibs -bind_at_load -multiply_defined suppress -multiply_defined suppress -commons use_dylibs -search_paths_first -no_compact_unwind -bind_at_load -multiply_defined suppress -multiply_defined suppress -commons use_dylibs -search_paths_first -no_compact_unwind /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o -lc++ -lmpifort -lmpi -lpmpi -lgfortran -lSystem -lgcc_ext.10.5 -lgcc -lquadmath -lm -lgcc_ext.10.5 -lgcc -lSystem -no_compact_unwind -v @(#)PROGRAM:ld PROJECT:ld64-609.8 BUILD 20:09:52 Nov 4 2020 configured to support archs: armv6 armv7 armv7s arm64 arm64e arm64_32 i386 x86_64 x86_64h armv6m armv7k armv7m armv7em Library search paths: /Users/jacobfaibussowitsch/NoSync/petscpackages/lib /usr/local/lib /usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 /usr/local/gfortran/lib /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib Framework search paths: /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/ compilers: Checking arg mpifort compilers: Unknown arg mpifort compilers: Checking arg for compilers: Unknown arg for compilers: Checking arg MPICH compilers: Unknown arg MPICH compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 3.3.2 compilers: Unknown arg 3.3.2 compilers: Checking arg Driving: compilers: Unknown arg Driving: compilers: Checking arg gfortran compilers: Unknown arg gfortran compilers: Checking arg -ffree-line-length-0 compilers: Unknown arg -ffree-line-length-0 compilers: Checking arg -g compilers: Unknown arg -g compilers: Checking arg -fallow-argument-mismatch compilers: Unknown arg -fallow-argument-mismatch compilers: Checking arg -Wl,-flat_namespace compilers: Unknown arg -Wl,-flat_namespace compilers: Checking arg -Wl,-commons,use_dylibs compilers: Unknown arg -Wl,-commons,use_dylibs compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest compilers: Unknown arg /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg -Wl,-bind_at_load compilers: Unknown arg -Wl,-bind_at_load compilers: Checking arg -Wl,-multiply_defined,suppress compilers: Unknown arg -Wl,-multiply_defined,suppress compilers: Checking arg -Wl,-multiply_defined compilers: Unknown arg -Wl,-multiply_defined compilers: Checking arg -Wl,suppress compilers: Unknown arg -Wl,suppress compilers: Checking arg -Wl,-commons,use_dylibs compilers: Unknown arg -Wl,-commons,use_dylibs compilers: Checking arg -Wl,-search_paths_first compilers: Unknown arg -Wl,-search_paths_first compilers: Checking arg -Wl,-no_compact_unwind compilers: Unknown arg -Wl,-no_compact_unwind compilers: Checking arg -Wl,-bind_at_load compilers: Unknown arg -Wl,-bind_at_load compilers: Checking arg -Wl,-multiply_defined,suppress compilers: Unknown arg -Wl,-multiply_defined,suppress compilers: Checking arg -Wl,-multiply_defined compilers: Unknown arg -Wl,-multiply_defined compilers: Checking arg -Wl,suppress compilers: Unknown arg -Wl,suppress compilers: Checking arg -Wl,-commons,use_dylibs compilers: Unknown arg -Wl,-commons,use_dylibs compilers: Checking arg -Wl,-search_paths_first compilers: Unknown arg -Wl,-search_paths_first compilers: Checking arg -Wl,-no_compact_unwind compilers: Unknown arg -Wl,-no_compact_unwind compilers: Checking arg -Wall compilers: Unknown arg -Wall compilers: Checking arg -ffree-line-length-0 compilers: Unknown arg -ffree-line-length-0 compilers: Checking arg -Wno-unused-dummy-argument compilers: Unknown arg -Wno-unused-dummy-argument compilers: Checking arg -g compilers: Unknown arg -g compilers: Checking arg /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o compilers: Unknown arg /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o compilers: Checking arg -lc++ compilers: Found library: -lc++ compilers: Checking arg -ldl compilers: Found library: -ldl compilers: Checking arg -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include compilers: Found include directory: /Users/jacobfaibussowitsch/NoSync/petscpackages/include compilers: Checking arg -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include compilers: Found include directory: /Users/jacobfaibussowitsch/NoSync/petscpackages/include compilers: Checking arg -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib compilers: Found library directory: -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib compilers: Checking arg -lmpifort compilers: Found library: -lmpifort compilers: Checking arg -lmpi compilers: Found library: -lmpi compilers: Checking arg -lpmpi compilers: Found library: -lpmpi compilers: Checking arg -mmacosx-version-min=10.16.0 compilers: Unknown arg -mmacosx-version-min=10.16.0 compilers: Checking arg -asm_macosx_version_min=10.16 compilers: Unknown arg -asm_macosx_version_min=10.16 compilers: Checking arg -l compilers: Found canonical library: -lgfortran compilers: Checking arg -shared-libgcc compilers: Unknown arg -shared-libgcc compilers: Checking arg Using compilers: Unknown arg Using compilers: Checking arg built-in compilers: Unknown arg built-in compilers: Checking arg specs. compilers: Unknown arg specs. compilers: Checking arg COLLECT_GCC=gfortran compilers: Unknown arg COLLECT_GCC=gfortran compilers: Checking arg COLLECT_LTO_WRAPPER=/usr/local/gfortran/libexec/gcc/x86_64-apple-darwin19/10.2.0/lto-wrapper compilers: Unknown arg COLLECT_LTO_WRAPPER=/usr/local/gfortran/libexec/gcc/x86_64-apple-darwin19/10.2.0/lto-wrapper compilers: Checking arg Target: compilers: Unknown arg Target: compilers: Checking arg x86_64-apple-darwin19 compilers: Unknown arg x86_64-apple-darwin19 compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg ../gcc-10.2.0/configure compilers: Unknown arg ../gcc-10.2.0/configure compilers: Checking arg --prefix=/usr/local/gfortran compilers: Unknown arg --prefix=/usr/local/gfortran compilers: Checking arg --with-gmp=/Users/fx/devel/gcc/build_package/deps compilers: Unknown arg --with-gmp=/Users/fx/devel/gcc/build_package/deps compilers: Checking arg --with-isl=/Users/fx/devel/gcc/build_package/deps compilers: Unknown arg --with-isl=/Users/fx/devel/gcc/build_package/deps compilers: Checking arg --enable-languages=c,c++,fortran,objc,obj-c++ compilers: Unknown arg --enable-languages=c,c++,fortran,objc,obj-c++ compilers: Checking arg --build=x86_64-apple-darwin19 compilers: Unknown arg --build=x86_64-apple-darwin19 compilers: Checking arg --with-native-system-header-dir=/usr/include compilers: Unknown arg --with-native-system-header-dir=/usr/include compilers: Checking arg --with-sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk compilers: Unknown arg --with-sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg Supported compilers: Unknown arg Supported compilers: Checking arg LTO compilers: Unknown arg LTO compilers: Checking arg compression compilers: Unknown arg compression compilers: Checking arg algorithms: compilers: Unknown arg algorithms: compilers: Checking arg zlib compilers: Unknown arg zlib compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 10.2.0 compilers: Unknown arg 10.2.0 compilers: Checking arg (GCC) compilers: Unknown arg (GCC) compilers: Checking arg Reading compilers: Unknown arg Reading compilers: Checking arg specs compilers: Unknown arg specs compilers: Checking arg from compilers: Unknown arg from compilers: Checking arg /usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0/../../../libgfortran.spec compilers: Unknown arg /usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0/../../../libgfortran.spec compilers: Checking arg rename compilers: Unknown arg rename compilers: Checking arg spec compilers: Unknown arg spec compilers: Checking arg lib compilers: Unknown arg lib compilers: Checking arg to compilers: Unknown arg to compilers: Checking arg liborig compilers: Unknown arg liborig compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg COMPILER_PATH=/usr/local/gfortran/libexec/gcc/x86_64-apple-darwin19/10.2.0/:/usr/local/gfortran/libexec/gcc/x86_64-apple-darwin19/10.2.0/:/usr/local/gfortran/libexec/gcc/x86_64-apple-darwin19/:/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0/:/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/ compilers: Skipping arg COMPILER_PATH=/usr/local/gfortran/libexec/gcc/x86_64-apple-darwin19/10.2.0/:/usr/local/gfortran/libexec/gcc/x86_64-apple-darwin19/10.2.0/:/usr/local/gfortran/libexec/gcc/x86_64-apple-darwin19/:/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0/:/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/ compilers: Checking arg LIBRARY_PATH=/usr/local/lib/:/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0/:/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0/../../../ compilers: Skipping arg LIBRARY_PATH=/usr/local/lib/:/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0/:/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0/../../../ compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg /usr/local/gfortran/libexec/gcc/x86_64-apple-darwin19/10.2.0/collect2 compilers: Unknown arg /usr/local/gfortran/libexec/gcc/x86_64-apple-darwin19/10.2.0/collect2 compilers: Checking arg -syslibroot compilers: Unknown arg -syslibroot compilers: Checking arg /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/ compilers: Unknown arg /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/ compilers: Checking arg -dynamic compilers: Unknown arg -dynamic compilers: Checking arg -arch compilers: Unknown arg -arch compilers: Checking arg x86_64 compilers: Unknown arg x86_64 compilers: Checking arg -macosx_version_min compilers: Unknown arg -macosx_version_min compilers: Checking arg 10.16.0 compilers: Unknown arg 10.16.0 compilers: Checking arg -weak_reference_mismatches compilers: Unknown arg -weak_reference_mismatches compilers: Checking arg non-weak compilers: Unknown arg non-weak compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest compilers: Unknown arg /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest compilers: Checking arg -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib compilers: Already in lflags so skipping: -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib compilers: Checking arg -L/usr/local/lib compilers: Found library directory: -L/usr/local/lib compilers: Checking arg -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 compilers: Found library directory: -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 compilers: Checking arg -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0/../../.. compilers: Found library directory: -L/usr/local/gfortran/lib compilers: Checking arg -flat_namespace compilers: Unknown arg -flat_namespace compilers: Checking arg -commons compilers: Unknown arg -commons compilers: Checking arg use_dylibs compilers: Unknown arg use_dylibs compilers: Checking arg -bind_at_load compilers: Unknown arg -bind_at_load compilers: Checking arg -multiply_defined compilers: Unknown arg -multiply_defined compilers: Checking arg suppress compilers: Unknown arg suppress compilers: Checking arg -multiply_defined compilers: Unknown arg -multiply_defined compilers: Checking arg suppress compilers: Unknown arg suppress compilers: Checking arg -commons compilers: Unknown arg -commons compilers: Checking arg use_dylibs compilers: Unknown arg use_dylibs compilers: Checking arg -search_paths_first compilers: Unknown arg -search_paths_first compilers: Checking arg -no_compact_unwind compilers: Unknown arg -no_compact_unwind compilers: Checking arg -bind_at_load compilers: Unknown arg -bind_at_load compilers: Checking arg -multiply_defined compilers: Unknown arg -multiply_defined compilers: Checking arg suppress compilers: Unknown arg suppress compilers: Checking arg -multiply_defined compilers: Unknown arg -multiply_defined compilers: Checking arg suppress compilers: Unknown arg suppress compilers: Checking arg -commons compilers: Unknown arg -commons compilers: Checking arg use_dylibs compilers: Unknown arg use_dylibs compilers: Checking arg -search_paths_first compilers: Unknown arg -search_paths_first compilers: Checking arg -no_compact_unwind compilers: Unknown arg -no_compact_unwind compilers: Checking arg /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o compilers: Unknown arg /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o compilers: Checking arg -lc++ compilers: Already in lflags: -lc++ compilers: Checking arg -lmpifort compilers: Already in lflags: -lmpifort compilers: Checking arg -lmpi compilers: Already in lflags: -lmpi compilers: Checking arg -lpmpi compilers: Already in lflags: -lpmpi compilers: Checking arg -lgfortran compilers: Found library: -lgfortran compilers: Checking arg -lSystem compilers: Found system library therefore skipping: -lSystem compilers: Checking arg -lgcc_ext.10.5 compilers: Found system library therefore skipping: -lgcc_ext.10.5 compilers: Checking arg -lgcc compilers: Found system library therefore skipping: -lgcc compilers: Checking arg -lquadmath compilers: Found library: -lquadmath compilers: Checking arg -lm compilers: Found library: -lm compilers: Checking arg -lgcc_ext.10.5 compilers: Found system library therefore skipping: -lgcc_ext.10.5 compilers: Checking arg -lgcc compilers: Found system library therefore skipping: -lgcc compilers: Checking arg -lSystem compilers: Found system library therefore skipping: -lSystem compilers: Checking arg -no_compact_unwind compilers: Unknown arg -no_compact_unwind compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg -idsym compilers: Unknown arg -idsym compilers: Checking arg collect2 compilers: Unknown arg collect2 compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 10.2.0 compilers: Unknown arg 10.2.0 compilers: Checking arg /usr/bin/ld compilers: Unknown arg /usr/bin/ld compilers: Checking arg -syslibroot compilers: Unknown arg -syslibroot compilers: Checking arg /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/ compilers: Unknown arg /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/ compilers: Checking arg -dynamic compilers: Unknown arg -dynamic compilers: Checking arg -arch compilers: Unknown arg -arch compilers: Checking arg x86_64 compilers: Unknown arg x86_64 compilers: Checking arg -macosx_version_min compilers: Unknown arg -macosx_version_min compilers: Checking arg 10.16.0 compilers: Unknown arg 10.16.0 compilers: Checking arg -weak_reference_mismatches compilers: Unknown arg -weak_reference_mismatches compilers: Checking arg non-weak compilers: Unknown arg non-weak compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest compilers: Unknown arg /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest compilers: Checking arg -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib compilers: Already in lflags so skipping: -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib compilers: Checking arg -L/usr/local/lib compilers: Already in lflags so skipping: -L/usr/local/lib compilers: Checking arg -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 compilers: Already in lflags so skipping: -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 compilers: Checking arg -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0/../../.. compilers: Already in lflags so skipping: -L/usr/local/gfortran/lib compilers: Checking arg -flat_namespace compilers: Unknown arg -flat_namespace compilers: Checking arg -commons compilers: Unknown arg -commons compilers: Checking arg use_dylibs compilers: Unknown arg use_dylibs compilers: Checking arg -bind_at_load compilers: Unknown arg -bind_at_load compilers: Checking arg -multiply_defined compilers: Unknown arg -multiply_defined compilers: Checking arg suppress compilers: Unknown arg suppress compilers: Checking arg -multiply_defined compilers: Unknown arg -multiply_defined compilers: Checking arg suppress compilers: Unknown arg suppress compilers: Checking arg -commons compilers: Unknown arg -commons compilers: Checking arg use_dylibs compilers: Unknown arg use_dylibs compilers: Checking arg -search_paths_first compilers: Unknown arg -search_paths_first compilers: Checking arg -no_compact_unwind compilers: Unknown arg -no_compact_unwind compilers: Checking arg -bind_at_load compilers: Unknown arg -bind_at_load compilers: Checking arg -multiply_defined compilers: Unknown arg -multiply_defined compilers: Checking arg suppress compilers: Unknown arg suppress compilers: Checking arg -multiply_defined compilers: Unknown arg -multiply_defined compilers: Checking arg suppress compilers: Unknown arg suppress compilers: Checking arg -commons compilers: Unknown arg -commons compilers: Checking arg use_dylibs compilers: Unknown arg use_dylibs compilers: Checking arg -search_paths_first compilers: Unknown arg -search_paths_first compilers: Checking arg -no_compact_unwind compilers: Unknown arg -no_compact_unwind compilers: Checking arg /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o compilers: Unknown arg /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o compilers: Checking arg -lc++ compilers: Already in lflags: -lc++ compilers: Checking arg -lmpifort compilers: Already in lflags: -lmpifort compilers: Checking arg -lmpi compilers: Already in lflags: -lmpi compilers: Checking arg -lpmpi compilers: Already in lflags: -lpmpi compilers: Checking arg -lgfortran compilers: Already in lflags: -lgfortran compilers: Checking arg -lSystem compilers: Found system library therefore skipping: -lSystem compilers: Checking arg -lgcc_ext.10.5 compilers: Found system library therefore skipping: -lgcc_ext.10.5 compilers: Checking arg -lgcc compilers: Found system library therefore skipping: -lgcc compilers: Checking arg -lquadmath compilers: Already in lflags: -lquadmath compilers: Checking arg -lm compilers: Already in lflags: -lm compilers: Checking arg -lgcc_ext.10.5 compilers: Found system library therefore skipping: -lgcc_ext.10.5 compilers: Checking arg -lgcc compilers: Found system library therefore skipping: -lgcc compilers: Checking arg -lSystem compilers: Found system library therefore skipping: -lSystem compilers: Checking arg -no_compact_unwind compilers: Unknown arg -no_compact_unwind compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg @(#)PROGRAM:ld compilers: Unknown arg @(#)PROGRAM:ld compilers: Checking arg PROJECT:ld64-609.8 compilers: Unknown arg PROJECT:ld64-609.8 compilers: Checking arg BUILD compilers: Unknown arg BUILD compilers: Checking arg 20:09:52 compilers: Unknown arg 20:09:52 compilers: Checking arg Nov compilers: Unknown arg Nov compilers: Checking arg 4 compilers: Unknown arg 4 compilers: Checking arg 2020 compilers: Unknown arg 2020 compilers: Checking arg configured compilers: Unknown arg configured compilers: Checking arg to compilers: Unknown arg to compilers: Checking arg support compilers: Unknown arg support compilers: Checking arg archs: compilers: Unknown arg archs: compilers: Checking arg armv6 compilers: Unknown arg armv6 compilers: Checking arg armv7 compilers: Unknown arg armv7 compilers: Checking arg armv7s compilers: Unknown arg armv7s compilers: Checking arg arm64 compilers: Unknown arg arm64 compilers: Checking arg arm64e compilers: Unknown arg arm64e compilers: Checking arg arm64_32 compilers: Unknown arg arm64_32 compilers: Checking arg i386 compilers: Unknown arg i386 compilers: Checking arg x86_64 compilers: Unknown arg x86_64 compilers: Checking arg x86_64h compilers: Unknown arg x86_64h compilers: Checking arg armv6m compilers: Unknown arg armv6m compilers: Checking arg armv7k compilers: Unknown arg armv7k compilers: Checking arg armv7m compilers: Unknown arg armv7m compilers: Checking arg armv7em compilers: Unknown arg armv7em compilers: Checking arg Library compilers: Unknown arg Library compilers: Checking arg search compilers: Unknown arg search compilers: Checking arg paths: compilers: Unknown arg paths: compilers: Checking arg /Users/jacobfaibussowitsch/NoSync/petscpackages/lib compilers: Unknown arg /Users/jacobfaibussowitsch/NoSync/petscpackages/lib compilers: Checking arg /usr/local/lib compilers: Unknown arg /usr/local/lib compilers: Checking arg /usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 compilers: Unknown arg /usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 compilers: Checking arg /usr/local/gfortran/lib compilers: Unknown arg /usr/local/gfortran/lib compilers: Checking arg /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib compilers: Unknown arg /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib compilers: Checking arg Framework compilers: Unknown arg Framework compilers: Checking arg search compilers: Unknown arg search compilers: Checking arg paths: compilers: Unknown arg paths: compilers: Checking arg /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/ compilers: Unknown arg /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/ compilers: Libraries needed to link Fortran code with the C linker: ['-lc++', '-ldl', '-Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib', '-L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib', '-lmpifort', '-lmpi', '-lpmpi', '-lgfortran', '-Wl,-rpath,/usr/local/lib', '-L/usr/local/lib', '-Wl,-rpath,/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0', '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0', '-Wl,-rpath,/usr/local/gfortran/lib', '-L/usr/local/gfortran/lib', '-lgfortran', '-lquadmath', '-lm'] compilers: Libraries needed to link Fortran main with the C linker: [] compilers: Check that Fortran libraries can be used with C as the linker ===== Checking compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -lc++ -ldl -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lmpifort -lmpi -lpmpi -lgfortran -Wl,-rpath,/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -Wl,-rpath,/usr/local/gfortran/lib -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -lc++ -ldl ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -lc++ -ldl -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lmpifort -lmpi -lpmpi -lgfortran -Wl,-rpath,/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -Wl,-rpath,/usr/local/gfortran/lib -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -lc++ -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lpetsc-ufod4vtr9mqHvKIQiVAm clang: error: linker command failed with exit code 1 (use -v to see invocation) ======== Checking running linked program ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -lc++ -ldl -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lmpifort -lmpi -lpmpi -lgfortran -Wl,-rpath,/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -Wl,-rpath,/usr/local/gfortran/lib -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -lc++ -ldl Testing executable /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest to see if it can be run Executing: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest compilers: Check that Fortran libraries can be used with C++ as linker compilers: Fortran libraries can be used from C++ ===== Checking compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -lc++ -ldl -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lmpifort -lmpi -lpmpi -lgfortran -Wl,-rpath,/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -Wl,-rpath,/usr/local/gfortran/lib -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -lc++ -ldl ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -lc++ -ldl -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lmpifort -lmpi -lpmpi -lgfortran -Wl,-rpath,/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -Wl,-rpath,/usr/local/gfortran/lib -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -lc++ -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lpetsc-ufod4vtr9mqHvKIQiVAm clang: error: linker command failed with exit code 1 (use -v to see invocation) ======== Checking running linked program ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -lc++ -ldl -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lmpifort -lmpi -lpmpi -lgfortran -Wl,-rpath,/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -Wl,-rpath,/usr/local/gfortran/lib -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -lc++ -ldl Testing executable /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest to see if it can be run Executing: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest ============================================================================================= TESTING: checkFortranLinkingCxx from config.compilers(config/BuildSystem/config/compilers.py:1332) Check that Fortran can link C++ libraries ===== Checking compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void foo(void){d1chk_();} ===== Checking compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void d1chk_(void){return;} ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.F90 Successful compile: Source: program main call d1chk() end Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/conftest.o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/cxxobj.o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/confc.o -lc++ -ldl Possible ERROR while running linker: stderr: ld: warning: object file (/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/cxxobj.o) was built for newer macOS version (11.0) than being linked (10.16) ld: warning: object file (/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers/confc.o) was built for newer macOS version (11.0) than being linked (10.16) compilers: Fortran can link C++ functions ============================================================================================= TESTING: setupFrameworkCompilers from config.compilers(config/BuildSystem/config/compilers.py:1487) Not checking for library in Download MPICH: [] because no functions given to check for ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for optional headers [] in Download MPICH: ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Found header files [] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Checking for headers [] in Download MPICH: ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] ============================================================================================= TESTING: checkVersion from config.packages.MPICH(config/BuildSystem/config/package.py:1021) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.MPICH(config/BuildSystem/config/package.py:953) By default we don't care about checking if the library is shared child config.packages.MPICH 24.217411 ============================================================================================= TESTING: consistencyChecks from config.packages.MPI(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.MPI(config/BuildSystem/config/package.py:870) ============================================================================================= TESTING: configureLibrary from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:703) ================================================================================== Checking for a functional MPI Checking for library in Package specific search directory MPI: [] Contents: ['bin', 'SEACASProjRepoVersion.txt', 'include', 'lib', 'share'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library [] [] ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -lc++ -ldl Checking for optional headers [] in Package specific search directory MPI: ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Found header files [] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Checking for headers ['mpi.h'] in Package specific search directory MPI: ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['mpi.h'] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Checking include with compiler flags var CPPFLAGS ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['mpi.h'] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] ============================================================================================= TESTING: checkMPIDistro from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:556) Determine if MPICH_NUMVERSION, OMPI_MAJOR_VERSION or MSMPI_VER exist in mpi.h Used for consistency checking of MPI installation at compile time ===== Checking compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:4:25: error: use of undeclared identifier 'I_MPI_VERSION' const char *mpich_ver = I_MPI_VERSION; ^ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include const char *mpich_ver = I_MPI_VERSION; int main() { ; return 0; } ===== Checking compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:4:17: error: use of undeclared identifier 'I_MPI_NUMVERSION' int mpich_ver = I_MPI_NUMVERSION; ^ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = I_MPI_NUMVERSION; int main() { ; return 0; } ===== Checking compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:4:17: error: use of undeclared identifier 'MVAPICH2_NUMVERSION' int mpich_ver = MVAPICH2_NUMVERSION; ^ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MVAPICH2_NUMVERSION; int main() { ; return 0; } ===== Checking compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MPICH_NUMVERSION; int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MPICH_NUMVERSION; Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c Defined "HAVE_MPICH_NUMVERSION" to "30302300" Executing: uname -s stdout: Darwin ============================================================================================= TESTING: configureMPI2 from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:331) Check for functions added to the interface in MPI-2 ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:6:35: warning: if statement has empty body [-Wempty-body] int flag;if (MPI_Finalized(&flag)); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:6:35: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int flag;if (MPI_Finalized(&flag)); ; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPI_FINALIZED" to "1" ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:6:71: warning: if statement has empty body [-Wempty-body] if (MPI_Allreduce(MPI_IN_PLACE,0, 1, MPI_INT, MPI_SUM, MPI_COMM_SELF)); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:6:71: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Allreduce(MPI_IN_PLACE,0, 1, MPI_INT, MPI_SUM, MPI_COMM_SELF)); ; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPI_IN_PLACE" to "1" ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:7:121: warning: if statement has empty body [-Wempty-body] if (MPI_Type_create_struct(count, blocklens, indices, old_types, newtype)); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:7:121: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int count=2; int blocklens[2]={0,1}; MPI_Aint indices[2]={0,1}; MPI_Datatype old_types[2]={0,1}; MPI_Datatype *newtype = 0; if (MPI_Type_create_struct(count, blocklens, indices, old_types, newtype)); ; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.o -lc++ -ldl ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:6:131: warning: if statement has empty body [-Wempty-body] MPI_Comm_errhandler_fn * p_err_fun = 0; MPI_Errhandler * p_errhandler = 0; if (MPI_Comm_create_errhandler(p_err_fun,p_errhandler)); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:6:131: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm_errhandler_fn * p_err_fun = 0; MPI_Errhandler * p_errhandler = 0; if (MPI_Comm_create_errhandler(p_err_fun,p_errhandler)); ; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.o -lc++ -ldl ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:6:63: warning: if statement has empty body [-Wempty-body] if (MPI_Comm_set_errhandler(MPI_COMM_WORLD,MPI_ERRORS_RETURN)); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:6:63: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_set_errhandler(MPI_COMM_WORLD,MPI_ERRORS_RETURN)); ; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.o -lc++ -ldl ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:6:49: warning: if statement has empty body [-Wempty-body] if (MPI_Reduce_local(0, 0, 0, MPI_INT, MPI_SUM));; ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:6:49: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Reduce_local(0, 0, 0, MPI_INT, MPI_SUM));; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPI_REDUCE_LOCAL" to "1" ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:6:102: warning: if statement has empty body [-Wempty-body] char version[MPI_MAX_LIBRARY_VERSION_STRING];int verlen;if (MPI_Get_library_version(version,&verlen)); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:6:102: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { char version[MPI_MAX_LIBRARY_VERSION_STRING];int verlen;if (MPI_Get_library_version(version,&verlen)); ; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPI_GET_LIBRARY_VERSION" to "1" ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:6:94: warning: if statement has empty body [-Wempty-body] int base[100]; MPI_Win win; if (MPI_Win_create(base,100,4,MPI_INFO_NULL,MPI_COMM_WORLD,&win)); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:6:94: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int base[100]; MPI_Win win; if (MPI_Win_create(base,100,4,MPI_INFO_NULL,MPI_COMM_WORLD,&win)); ; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPI_WIN_CREATE" to "1" Defined "HAVE_MPI_ONE_SIDED" to "1" ============================================================================================= TESTING: configureMPI3 from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:376) Check for functions added to the interface in MPI-3 ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:7:112: warning: if statement has empty body [-Wempty-body] if (MPI_Comm_split_type(MPI_COMM_WORLD, MPI_COMM_TYPE_SHARED, 0, MPI_INFO_NULL, &scomm)); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:7:112: note: put the semicolon on a separate line to silence this warning /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:8:111: warning: if statement has empty body [-Wempty-body] if (MPI_Win_allocate_shared(size,disp_unit,MPI_INFO_NULL,MPI_COMM_WORLD,&baseptr,&win)); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:8:111: note: put the semicolon on a separate line to silence this warning /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:9:82: warning: if statement has empty body [-Wempty-body] if (MPI_Win_shared_query(win,0,&size,&disp_unit,&baseptr)); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:9:82: note: put the semicolon on a separate line to silence this warning 3 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm scomm; MPI_Aint size=128; int disp_unit=8,*baseptr; MPI_Win win; if (MPI_Comm_split_type(MPI_COMM_WORLD, MPI_COMM_TYPE_SHARED, 0, MPI_INFO_NULL, &scomm)); if (MPI_Win_allocate_shared(size,disp_unit,MPI_INFO_NULL,MPI_COMM_WORLD,&baseptr,&win)); if (MPI_Win_shared_query(win,0,&size,&disp_unit,&baseptr)); ; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPI_PROCESS_SHARED_MEMORY" to "1" ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:7:96: warning: if statement has empty body [-Wempty-body] if (MPI_Iscatter(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:7:96: note: put the semicolon on a separate line to silence this warning /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:8:110: warning: if statement has empty body [-Wempty-body] if (MPI_Iscatterv(&send,counts,displs,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:8:110: note: put the semicolon on a separate line to silence this warning /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:9:96: warning: if statement has empty body [-Wempty-body] if (MPI_Igather(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:9:96: note: put the semicolon on a separate line to silence this warning /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:10:109: warning: if statement has empty body [-Wempty-body] if (MPI_Igatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,0,MPI_COMM_WORLD,&req)); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:10:109: note: put the semicolon on a separate line to silence this warning /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:11:97: warning: if statement has empty body [-Wempty-body] if (MPI_Iallgather(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:11:97: note: put the semicolon on a separate line to silence this warning /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:12:110: warning: if statement has empty body [-Wempty-body] if (MPI_Iallgatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,MPI_COMM_WORLD,&req)); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:12:110: note: put the semicolon on a separate line to silence this warning /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:13:96: warning: if statement has empty body [-Wempty-body] if (MPI_Ialltoall(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:13:96: note: put the semicolon on a separate line to silence this warning 7 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int send=0,recv,counts[2]={1,1},displs[2]={1,2}; MPI_Request req; if (MPI_Iscatter(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Iscatterv(&send,counts,displs,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Igather(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Igatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Iallgather(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); if (MPI_Iallgatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,MPI_COMM_WORLD,&req)); if (MPI_Ialltoall(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); ; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPI_NONBLOCKING_COLLECTIVES" to "1" ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:8:145: warning: if statement has empty body [-Wempty-body] if (MPI_Dist_graph_create_adjacent(MPI_COMM_WORLD,0,0,MPI_WEIGHTS_EMPTY,0,0,MPI_WEIGHTS_EMPTY,MPI_INFO_NULL,0,&distcomm)); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:8:145: note: put the semicolon on a separate line to silence this warning /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:9:89: warning: if statement has empty body [-Wempty-body] if (MPI_Neighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm)); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:9:89: note: put the semicolon on a separate line to silence this warning /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:10:95: warning: if statement has empty body [-Wempty-body] if (MPI_Ineighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm,&req)); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:10:95: note: put the semicolon on a separate line to silence this warning 3 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm distcomm; MPI_Request req; if (MPI_Dist_graph_create_adjacent(MPI_COMM_WORLD,0,0,MPI_WEIGHTS_EMPTY,0,0,MPI_WEIGHTS_EMPTY,MPI_INFO_NULL,0,&distcomm)); if (MPI_Neighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm)); if (MPI_Ineighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm,&req)); ; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPI_NEIGHBORHOOD_COLLECTIVES" to "1" ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:6:104: warning: if statement has empty body [-Wempty-body] int ptr[1]; MPI_Win win; if (MPI_Get_accumulate(ptr,1,MPI_INT,ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_SUM,win)); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:6:104: note: put the semicolon on a separate line to silence this warning /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:6:99: warning: variable 'win' is uninitialized when used here [-Wuninitialized] int ptr[1]; MPI_Win win; if (MPI_Get_accumulate(ptr,1,MPI_INT,ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_SUM,win)); ^~~ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:6:24: note: initialize the variable 'win' to silence this warning int ptr[1]; MPI_Win win; if (MPI_Get_accumulate(ptr,1,MPI_INT,ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_SUM,win)); ^ = 0 2 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ptr[1]; MPI_Win win; if (MPI_Get_accumulate(ptr,1,MPI_INT,ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_SUM,win)); ; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPI_GET_ACCUMULATE" to "1" ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:6:94: warning: if statement has empty body [-Wempty-body] int ptr[1]; MPI_Win win; MPI_Request req; if (MPI_Rget(ptr,1,MPI_INT,0,1,1,MPI_INT,win,&req)); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:6:94: note: put the semicolon on a separate line to silence this warning /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:6:84: warning: variable 'win' is uninitialized when used here [-Wuninitialized] int ptr[1]; MPI_Win win; MPI_Request req; if (MPI_Rget(ptr,1,MPI_INT,0,1,1,MPI_INT,win,&req)); ^~~ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:6:24: note: initialize the variable 'win' to silence this warning int ptr[1]; MPI_Win win; MPI_Request req; if (MPI_Rget(ptr,1,MPI_INT,0,1,1,MPI_INT,win,&req)); ^ = 0 2 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ptr[1]; MPI_Win win; MPI_Request req; if (MPI_Rget(ptr,1,MPI_INT,0,1,1,MPI_INT,win,&req)); ; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPI_RGET" to "1" ============================================================================================= TESTING: configureMPIEXEC from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:176) Checking for location of mpiexec Checking for program /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpiexec...found Checking for program /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpiexec...found Defined make macro "MPIEXECEXECUTABLE" to "/Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpiexec" Running Executable with threads to time it out at 60 Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpiexec -n 1 printenv stdout: clustermaster=0 GIT_PS1_SHOWDIRTYSTATE=1 TERM_PROGRAM=Apple_Terminal NO_SYNC_BASE=/Users/jacobfaibussowitsch/NoSync LAMMPS_DIR=/Users/jacobfaibussowitsch/NoSync/lammps TERM=xterm-256color SHELL=/bin/bash CLICOLOR=1 PETSC_ARCH=master-arch-darwin-c-debug TMPDIR=/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/ LIBRARY_PATH=/usr/local/lib mcsmasterx11=0 PETSC_GIT_BRANCH_PREVIOUS=jacobf/2020-12-14/docs/port-website-to-sphinx TERM_PROGRAM_VERSION=440 PETSC_GITLAB_USER_NAME=Jfaibussowitsch TERM_SESSION_ID=BF3E841D-6353-47E3-A27F-A58772A75384 PETSC_GIT_BRANCH_PREFIX=jacobf GIT_PS1_SHOWCOLORHINTS=1 USER=jacobfaibussowitsch SSH_AUTH_SOCK=/private/tmp/com.apple.launchd.TlPIxcbS2n/Listeners __CF_USER_TEXT_ENCODING=0x1F5:0x0:0x0 REMOTE_USER=jacobfaibussowitsch COLUMNS=100 mcsmaster=0 PETSC_GITLAB_PRIVATE_TOKEN=t48hzyzhw1mBX8Rzy7d8 PETSC_PACK_DIR=/Users/jacobfaibussowitsch/NoSync/petscpackages LSCOLORS=ExFxBxDxCxegedabagacad PATH=/usr/local/opt/ccache/libexec:/usr/local/opt/gnu-sed/libexec/gnubin:/usr/local/bin:/Users/jacobfaibussowitsch/NoSync/petscpackages/bin:/usr/local/sbin:/Users/jacobfaibussowitsch/.cargo/bin:/usr/bin:/usr/sbin:/bin:/sbin:/usr/X11R6/bin:/opt/local/bin _=/Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpiexec __CFBundleIdentifier=com.apple.Terminal PWD=/Users/jacobfaibussowitsch/NoSync/petsc EDITOR=emacsclient LANG=en_US.UTF-8 alcfmaster=0 XPC_FLAGS=0x0 LINES=57 olcftutorialdir=/ccs/home/jfaibussow/petsc/src/ts/examples/tutorials LAMMPS_ARCH=custom_link XPC_SERVICE_NAME=0 DOCKER_BUILDKIT=1 SHLVL=2 HOME=/Users/jacobfaibussowitsch SLEPC_DIR=/Users/jacobfaibussowitsch/NoSync/petsc/arch-slepc-lammps/externalpackages/git.slepc LOC=/Users/jacobfaibussowitsch/NoSync/petscdocs LOGNAME=jacobfaibussowitsch GIT_PS1_SHOWUPSTREAM=auto alcftutorialdir=/home/jfaibussowitsch/petsc/src/ts/examples/tutorials PROMPT_COMMAND=prompt_command DISPLAY=/private/tmp/com.apple.launchd.L4SfhQAcsj/org.macosforge.xquartz:0 PETSC_DIR=/Users/jacobfaibussowitsch/NoSync/petsc WARP3D_HOME=/Users/jacobfaibussowitsch/NoSync/warp3d BASH_FUNC_spa%%=() { if [ $# -eq 0 ]; then spa_internal; else lenarches=${#MY_PETSC_ARCH_LIST[@]}; list2arch=("arch-darwin-c-debug" "64-arch-darwin-c-debug" "master-arch-darwin-c-debug" "arch-slepc-lammps" "arch-darwin-c-opt" "arch-darwin-c-clang-opt" "${PETSC_ARCH}"); if [ $1 -ge 0 ] || [ $1 -lt $lenarches ]; then echo ${list2arch[$1]}; export PETSC_ARCH=${list2arch[$1]}; fi; fi } BASH_FUNC_pmaint%%=() { PREVDIR=`pwd`; echo "${PREVDIR}"; cd ${PETSC_DIR}; echo "RECONFIGURING ${PETSC_ARCH} $@"; python3 ./${PETSC_ARCH}/lib/petsc/conf/reconfigure-${PETSC_ARCH}.py $@; cd ${PREVDIR} } BASH_FUNC_parse_petsc_arch%%=() { new_petsc_arch=${PETSC_ARCH//"arch-"/}; maxlen=15; cutlen=4; shortstr=$(shorten_string ${new_petsc_arch} ${maxlen} ${cutlen}); if [[ "${CCACHE_DISABLE@a}" == *x* ]]; then echo "${PSYELLOW}${shortstr}${PSCLEAR}"; else echo "$shortstr"; fi } HYDI_CONTROL_FD=8 GFORTRAN_UNBUFFERED_PRECONNECTED=y MPIR_CVAR_CH3_INTERFACE_HOSTNAME=Jacobs-MacBook-Pro.local MPI_LOCALNRANKS=1 MPI_LOCALRANKID=0 PMI_RANK=0 PMI_FD=4 PMI_SIZE=1 Defined "HAVE_MPIEXEC_ENVIRONMENTAL_VARIABLE" to "MPIR_CVAR_CH3" Defined make macro "MPIEXEC" to "/Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpiexec" Checking for program /usr/libexec/ApplicationFirewall/socketfilterfw...found Defined make macro "SOCKETFILTERFW" to "/usr/libexec/ApplicationFirewall/socketfilterfw" Running Executable with threads to time it out at 60 Executing: /usr/libexec/ApplicationFirewall/socketfilterfw --getglobalstate stdout: Firewall is disabled. (State = 0) Checking for program /usr/local/opt/ccache/libexec/hostname...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/hostname...not found Checking for program /usr/local/bin/hostname...not found Checking for program /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/hostname...not found Checking for program /usr/local/sbin/hostname...not found Checking for program /Users/jacobfaibussowitsch/.cargo/bin/hostname...not found Checking for program /usr/bin/hostname...not found Checking for program /usr/sbin/hostname...not found Checking for program /bin/hostname...found Defined make macro "HOSTNAME" to "hostname" Running Executable with threads to time it out at 60 Executing: hostname stdout: Jacobs-MacBook-Pro.local Return code from hostname: 0 Hostname works, running network checks Checking for program /sbin/ping...found Defined make macro "PING" to "/sbin/ping" Executing: uname -s stdout: Darwin Running Executable with threads to time it out at 60 Executing: /sbin/ping -c 2 Jacobs-MacBook-Pro.local stdout: PING jacobs-macbook-pro.local (127.0.0.1): 56 data bytes 64 bytes from 127.0.0.1: icmp_seq=0 ttl=64 time=0.078 ms 64 bytes from 127.0.0.1: icmp_seq=1 ttl=64 time=0.169 ms --- jacobs-macbook-pro.local ping statistics --- 2 packets transmitted, 2 packets received, 0.0% packet loss round-trip min/avg/max/stddev = 0.078/0.123/0.169/0.046 ms Return code from ping: 0 ============================================================================================= ======== Checking running linked program ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Init(0,0); MPI_Finalize(); ; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.o -lc++ -ldl Testing executable /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest to see if it can be run Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpiexec -n 1 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest Running Executable with threads to time it out at 60 Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpiexec -n 1 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest ============================================================================================= TESTING: configureMPITypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:423) Checking for MPI Datatype handles ===== Checking compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_LONG_DOUBLE, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } ======== Checking running linked program ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_LONG_DOUBLE, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.o -lc++ -ldl Testing executable /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest to see if it can be run Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpiexec -n 1 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest Running Executable with threads to time it out at 60 Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpiexec -n 1 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest Defined "HAVE_MPI_LONG_DOUBLE" to "1" ===== Checking compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_INT64_T, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } ======== Checking running linked program ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_INT64_T, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.o -lc++ -ldl Testing executable /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest to see if it can be run Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpiexec -n 1 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest Running Executable with threads to time it out at 60 Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpiexec -n 1 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest Defined "HAVE_MPI_INT64_T" to "1" ===== Checking compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_C_DOUBLE_COMPLEX, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } ======== Checking running linked program ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_C_DOUBLE_COMPLEX, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.o -lc++ -ldl Testing executable /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest to see if it can be run Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpiexec -n 1 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest Running Executable with threads to time it out at 60 Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpiexec -n 1 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest Defined "HAVE_MPI_C_DOUBLE_COMPLEX" to "1" ============================================================================================= TESTING: SGIMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:484) Returns true if SGI MPI is used Checking for functions [MPI_SGI_barrier] in library [] [] ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_SGI_barrier(); static void _check_MPI_SGI_barrier() { MPI_SGI_barrier(); } int main() { _check_MPI_SGI_barrier();; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_MPI_SGI_barrier", referenced from: __check_MPI_SGI_barrier in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) SGI MPI test failure ============================================================================================= TESTING: CxxMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:494) Make sure C++ can compile and link Checking for header mpi.h Checking for C++ MPI_Finalize() Checking for functions [MPI_Finalize] in library [] [] ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_MPI_Finalize() { int ierr; ierr = MPI_Finalize();; } int main() { _check_MPI_Finalize();; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -lc++ -ldl ============================================================================================= TESTING: FortranMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:510) Make sure fortran include [mpif.h] and library symbols are found Checking for fortran mpi_init() Checking for functions [] in library [] [] ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.F90 Successful compile: Source: program main #include "mpif.h" integer ierr call mpi_init(ierr) end Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -lc++ -ldl Checking for mpi.mod Checking for functions [] in library [] [] ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.F90 Successful compile: Source: program main use mpi integer ierr,rank call mpi_init(ierr) call mpi_comm_rank(MPI_COMM_WORLD,rank,ierr) end Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -lc++ -ldl Defined "HAVE_MPI_F90MODULE" to "1" ============================================================================================= TESTING: configureIO from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:532) Check for the functions in MPI/IO - Define HAVE_MPIIO if they are present - Some older MPI 1 implementations are missing these ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:7:48: warning: if statement has empty body [-Wempty-body] if (MPI_Type_get_extent(MPI_INT, &lb, &extent)); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:7:48: note: put the semicolon on a separate line to silence this warning /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:12:54: warning: if statement has empty body [-Wempty-body] if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:12:54: note: put the semicolon on a separate line to silence this warning /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:14:102: warning: if statement has empty body [-Wempty-body] if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:14:102: note: put the semicolon on a separate line to silence this warning /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:18:61: warning: if statement has empty body [-Wempty-body] if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:18:61: note: put the semicolon on a separate line to silence this warning /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:20:101: warning: if statement has empty body [-Wempty-body] if (MPI_File_open(MPI_COMM_SELF, "", 0, info, &fh)); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:20:101: note: put the semicolon on a separate line to silence this warning /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:22:74: warning: if statement has empty body [-Wempty-body] if (MPI_File_close(&fh)); ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:22:74: note: put the semicolon on a separate line to silence this warning /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:18:55: warning: variable 'info' is uninitialized when used here [-Wuninitialized] if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); ^~~~ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:17:14: note: initialize the variable 'info' to silence this warning MPI_Info info; ^ = 0 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:12:24: warning: variable 'fh' is uninitialized when used here [-Wuninitialized] if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); ^~ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:9:61: note: initialize the variable 'fh' to silence this warning MPI_File fh; ^ = 0 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:18:27: warning: variable 'disp' is uninitialized when used here [-Wuninitialized] if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); ^~~~ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:16:65: note: initialize the variable 'disp' to silence this warning MPI_Offset disp; ^ = 0 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:14:76: warning: variable 'buf' is uninitialized when used here [-Wuninitialized] if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)); ^~~ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:10:10: note: initialize the variable 'buf' to silence this warning void *buf; ^ = 0 10 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Aint lb, extent; if (MPI_Type_get_extent(MPI_INT, &lb, &extent)); MPI_File fh; void *buf; MPI_Status status; if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)); MPI_Offset disp; MPI_Info info; if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); if (MPI_File_open(MPI_COMM_SELF, "", 0, info, &fh)); if (MPI_File_close(&fh)); ; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.o -lc++ -ldl Defined "HAVE_MPIIO" to "1" ============================================================================================= TESTING: findMPIInc from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:636) Find MPI include paths from "mpicc -show" and use with CUDAC_FLAGS ============================================================================================= TESTING: PetscArchMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:678) Checking for functions [MPI_Type_get_envelope MPI_Type_dup MPI_Init_thread MPI_Iallreduce MPI_Ibarrier MPI_Finalized MPI_Exscan MPI_Reduce_scatter MPI_Reduce_scatter_block] in library [] [] ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Type_get_envelope(); static void _check_MPI_Type_get_envelope() { MPI_Type_get_envelope(); } char MPI_Type_dup(); static void _check_MPI_Type_dup() { MPI_Type_dup(); } char MPI_Init_thread(); static void _check_MPI_Init_thread() { MPI_Init_thread(); } char MPI_Iallreduce(); static void _check_MPI_Iallreduce() { MPI_Iallreduce(); } char MPI_Ibarrier(); static void _check_MPI_Ibarrier() { MPI_Ibarrier(); } char MPI_Finalized(); static void _check_MPI_Finalized() { MPI_Finalized(); } char MPI_Exscan(); static void _check_MPI_Exscan() { MPI_Exscan(); } char MPI_Reduce_scatter(); static void _check_MPI_Reduce_scatter() { MPI_Reduce_scatter(); } char MPI_Reduce_scatter_block(); static void _check_MPI_Reduce_scatter_block() { MPI_Reduce_scatter_block(); } int main() { _check_MPI_Type_get_envelope(); _check_MPI_Type_dup(); _check_MPI_Init_thread(); _check_MPI_Iallreduce(); _check_MPI_Ibarrier(); _check_MPI_Finalized(); _check_MPI_Exscan(); _check_MPI_Reduce_scatter(); _check_MPI_Reduce_scatter_block();; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -lc++ -ldl Defined "HAVE_MPI_TYPE_GET_ENVELOPE" to "1" Defined "HAVE_MPI_TYPE_DUP" to "1" Defined "HAVE_MPI_INIT_THREAD" to "1" Defined "HAVE_MPI_IALLREDUCE" to "1" Defined "HAVE_MPI_IBARRIER" to "1" Defined "HAVE_MPI_FINALIZED" to "1" Defined "HAVE_MPI_EXSCAN" to "1" Defined "HAVE_MPI_REDUCE_SCATTER" to "1" Defined "HAVE_MPI_REDUCE_SCATTER_BLOCK" to "1" Checking for functions [MPIX_Iallreduce] in library [] [] ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIX_Iallreduce(); static void _check_MPIX_Iallreduce() { MPIX_Iallreduce(); } int main() { _check_MPIX_Iallreduce();; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_MPIX_Iallreduce", referenced from: __check_MPIX_Iallreduce in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Checking for functions [MPIX_Ibarrier] in library [] [] ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIX_Ibarrier(); static void _check_MPIX_Ibarrier() { MPIX_Ibarrier(); } int main() { _check_MPIX_Ibarrier();; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_MPIX_Ibarrier", referenced from: __check_MPIX_Ibarrier in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) ===== Checking compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:6:5: warning: unused variable 'combiner' [-Wunused-variable] int combiner = MPI_COMBINER_DUP;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_DUP;; return 0; } Defined "HAVE_MPI_COMBINER_DUP" to "1" ===== Checking compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:6:5: warning: unused variable 'combiner' [-Wunused-variable] int combiner = MPI_COMBINER_CONTIGUOUS;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_CONTIGUOUS;; return 0; } Defined "HAVE_MPI_COMBINER_CONTIGUOUS" to "1" ===== Checking compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c:6:5: warning: unused variable 'combiner' [-Wunused-variable] int combiner = MPI_COMBINER_NAMED;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_NAMED;; return 0; } Defined "HAVE_MPI_COMBINER_NAMED" to "1" ============================================================================================= TESTING: checkVersion from config.packages.MPI(config/BuildSystem/config/package.py:1021) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "mpi.h" ;petscpkgver(MPI_VERSION); Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI/conftest.c For mpi need 2 <= 3 <= ============================================================================================= TESTING: checkSharedLibrary from config.packages.MPI(config/BuildSystem/config/package.py:953) By default we don't care about checking if the library is shared child config.packages.MPI 12.444288 ============================================================================================= TESTING: consistencyChecks from config.packages.zstd(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.zstd(config/BuildSystem/config/package.py:870) ============================================================================================= TESTING: configureLibrary from config.packages.zstd(config/BuildSystem/config/package.py:895) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional zstd Checking for library in Compiler specific search ZSTD: [] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [ZSTD_compress] in library [] [] ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ZSTD_compress(); static void _check_ZSTD_compress() { ZSTD_compress(); } int main() { _check_ZSTD_compress();; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_ZSTD_compress", referenced from: __check_ZSTD_compress in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Checking for library in Compiler specific search ZSTD: ['libzstd.a'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [ZSTD_compress] in library ['libzstd.a'] [] ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ZSTD_compress(); static void _check_ZSTD_compress() { ZSTD_compress(); } int main() { _check_ZSTD_compress();; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -lzstd -lc++ -ldl Defined "HAVE_LIBZSTD" to "1" Checking for optional headers [] in Compiler specific search ZSTD: ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Found header files [] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Checking for headers ['zstd.h'] in Compiler specific search ZSTD: ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['zstd.h'] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Checking include with compiler flags var CPPFLAGS ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['zstd.h'] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] ============================================================================================= TESTING: checkVersion from config.packages.zstd(config/BuildSystem/config/package.py:1021) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "zstd.h" ;petscpkgver(); Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.zstd /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.zstd/conftest.c For zstd unable to find version information: output below, skipping version check typedeflongintptrdiff_t;typedeflongunsignedintsize_t;typedeflongunsignedintrsize_t;typedefintwchar_t;typedeflongdoublemax_align_t;__attribute__((visibility(default)))unsignedZSTD_versionNumber(void);__attribute__((visibility(default)))constchar*ZSTD_versionString(void);__attribute__((visibility(default)))size_tZSTD_compress(void*dst,size_tdstCapacity,constvoid*src,size_tsrcSize,intcompressionLevel);__attribute__((visibility(default)))size_tZSTD_decompress(void*dst,size_tdstCapacity,constvoid*src,size_tcompressedSize);__attribute__((visibility(default)))unsignedlonglongZSTD_getFrameContentSize(constvoid*src,size_tsrcSize);__attribute__((visibility(default)))unsignedlonglongZSTD_getDecompressedSize(constvoid*src,size_tsrcSize);__attribute__((visibility(default)))size_tZSTD_findFrameCompressedSize(constvoid*src,size_tsrcSize);__attribute__((visibility(default)))size_tZSTD_compressBound(size_tsrcSize);__attribute__((visibility(default)))unsignedZSTD_isError(size_tcode);__attribute__((visibility(default)))constchar*ZSTD_getErrorName(size_tcode);__attribute__((visibility(default)))intZSTD_minCLevel(void);__attribute__((visibility(default)))intZSTD_maxCLevel(void);typedefstructZSTD_CCtx_sZSTD_CCtx;__attribute__((visibility(default)))ZSTD_CCtx*ZSTD_createCCtx(void);__attribute__((visibility(default)))size_tZSTD_freeCCtx(ZSTD_CCtx*cctx);__attribute__((visibility(default)))size_tZSTD_compressCCtx(ZSTD_CCtx*cctx,void*dst,size_tdstCapacity,constvoid*src,size_tsrcSize,intcompressionLevel);typedefstructZSTD_DCtx_sZSTD_DCtx;__attribute__((visibility(default)))ZSTD_DCtx*ZSTD_createDCtx(void);__attribute__((visibility(default)))size_tZSTD_freeDCtx(ZSTD_DCtx*dctx);__attribute__((visibility(default)))size_tZSTD_decompressDCtx(ZSTD_DCtx*dctx,void*dst,size_tdstCapacity,constvoid*src,size_tsrcSize);typedefenum{ZSTD_fast=1,ZSTD_dfast=2,ZSTD_greedy=3,ZSTD_lazy=4,ZSTD_lazy2=5,ZSTD_btlazy2=6,ZSTD_btopt=7,ZSTD_btultra=8,ZSTD_btultra2=9}ZSTD_strategy;typedefenum{ZSTD_c_compressionLevel=100,ZSTD_c_windowLog=101,ZSTD_c_hashLog=102,ZSTD_c_chainLog=103,ZSTD_c_searchLog=104,ZSTD_c_minMatch=105,ZSTD_c_targetLength=106,ZSTD_c_strategy=107,ZSTD_c_enableLongDistanceMatching=160,ZSTD_c_ldmHashLog=161,ZSTD_c_ldmMinMatch=162,ZSTD_c_ldmBucketSizeLog=163,ZSTD_c_ldmHashRateLog=164,ZSTD_c_contentSizeFlag=200,ZSTD_c_checksumFlag=201,ZSTD_c_dictIDFlag=202,ZSTD_c_nbWorkers=400,ZSTD_c_jobSize=401,ZSTD_c_overlapLog=402,ZSTD_c_experimentalParam1=500,ZSTD_c_experimentalParam2=10,ZSTD_c_experimentalParam3=1000,ZSTD_c_experimentalParam4=1001,ZSTD_c_experimentalParam5=1002,ZSTD_c_experimentalParam6=1003,ZSTD_c_experimentalParam7=1004,ZSTD_c_experimentalParam8=1005,ZSTD_c_experimentalParam9=1006,ZSTD_c_experimentalParam10=1007,ZSTD_c_experimentalParam11=1008,ZSTD_c_experimentalParam12=1009}ZSTD_cParameter;typedefstruct{size_terror;intlowerBound;intupperBound;}ZSTD_bounds;__attribute__((visibility(default)))ZSTD_boundsZSTD_cParam_getBounds(ZSTD_cParametercParam);__attribute__((visibility(default)))size_tZSTD_CCtx_setParameter(ZSTD_CCtx*cctx,ZSTD_cParameterparam,intvalue);__attribute__((visibility(default)))size_tZSTD_CCtx_setPledgedSrcSize(ZSTD_CCtx*cctx,unsignedlonglongpledgedSrcSize);typedefenum{ZSTD_reset_session_only=1,ZSTD_reset_parameters=2,ZSTD_reset_session_and_parameters=3}ZSTD_ResetDirective;__attribute__((visibility(default)))size_tZSTD_CCtx_reset(ZSTD_CCtx*cctx,ZSTD_ResetDirectivereset);__attribute__((visibility(default)))size_tZSTD_compress2(ZSTD_CCtx*cctx,void*dst,size_tdstCapacity,constvoid*src,size_tsrcSize);typedefenum{ZSTD_d_windowLogMax=100,ZSTD_d_experimentalParam1=1000,ZSTD_d_experimentalParam2=1001,ZSTD_d_experimentalParam3=1002}ZSTD_dParameter;__attribute__((visibility(default)))ZSTD_boundsZSTD_dParam_getBounds(ZSTD_dParameterdParam);__attribute__((visibility(default)))size_tZSTD_DCtx_setParameter(ZSTD_DCtx*dctx,ZSTD_dParameterparam,intvalue);__attribute__((visibility(default)))size_tZSTD_DCtx_reset(ZSTD_DCtx*dctx,ZSTD_ResetDirectivereset);typedefstructZSTD_inBuffer_s{constvoid*src;size_tsize;size_tpos;}ZSTD_inBuffer;typedefstructZSTD_outBuffer_s{void*dst;size_tsize;size_tpos;}ZSTD_outBuffer;typedefZSTD_CCtxZSTD_CStream;__attribute__((visibility(default)))ZSTD_CStream*ZSTD_createCStream(void);__attribute__((visibility(default)))size_tZSTD_freeCStream(ZSTD_CStream*zcs);typedefenum{ZSTD_e_continue=0,ZSTD_e_flush=1,ZSTD_e_end=2}ZSTD_EndDirective;__attribute__((visibility(default)))size_tZSTD_compressStream2(ZSTD_CCtx*cctx,ZSTD_outBuffer*output,ZSTD_inBuffer*input,ZSTD_EndDirectiveendOp);__attribute__((visibility(default)))size_tZSTD_CStreamInSize(void);__attribute__((visibility(default)))size_tZSTD_CStreamOutSize(void);__attribute__((visibility(default)))size_tZSTD_initCStream(ZSTD_CStream*zcs,intcompressionLevel);__attribute__((visibility(default)))size_tZSTD_compressStream(ZSTD_CStream*zcs,ZSTD_outBuffer*output,ZSTD_inBuffer*input);__attribute__((visibility(default)))size_tZSTD_flushStream(ZSTD_CStream*zcs,ZSTD_outBuffer*output);__attribute__((visibility(default)))size_tZSTD_endStream(ZSTD_CStream*zcs,ZSTD_outBuffer*output);typedefZSTD_DCtxZSTD_DStream;__attribute__((visibility(default)))ZSTD_DStream*ZSTD_createDStream(void);__attribute__((visibility(default)))size_tZSTD_freeDStream(ZSTD_DStream*zds);__attribute__((visibility(default)))size_tZSTD_initDStream(ZSTD_DStream*zds);__attribute__((visibility(default)))size_tZSTD_decompressStream(ZSTD_DStream*zds,ZSTD_outBuffer*output,ZSTD_inBuffer*input);__attribute__((visibility(default)))size_tZSTD_DStreamInSize(void);__attribute__((visibility(default)))size_tZSTD_DStreamOutSize(void);__attribute__((visibility(default)))size_tZSTD_compress_usingDict(ZSTD_CCtx*ctx,void*dst,size_tdstCapacity,constvoid*src,size_tsrcSize,constvoid*dict,size_tdictSize,intcompressionLevel);__attribute__((visibility(default)))size_tZSTD_decompress_usingDict(ZSTD_DCtx*dctx,void*dst,size_tdstCapacity,constvoid*src,size_tsrcSize,constvoid*dict,size_tdictSize);typedefstructZSTD_CDict_sZSTD_CDict;__attribute__((visibility(default)))ZSTD_CDict*ZSTD_createCDict(constvoid*dictBuffer,size_tdictSize,intcompressionLevel);__attribute__((visibility(default)))size_tZSTD_freeCDict(ZSTD_CDict*CDict);__attribute__((visibility(default)))size_tZSTD_compress_usingCDict(ZSTD_CCtx*cctx,void*dst,size_tdstCapacity,constvoid*src,size_tsrcSize,constZSTD_CDict*cdict);typedefstructZSTD_DDict_sZSTD_DDict;__attribute__((visibility(default)))ZSTD_DDict*ZSTD_createDDict(constvoid*dictBuffer,size_tdictSize);__attribute__((visibility(default)))size_tZSTD_freeDDict(ZSTD_DDict*ddict);__attribute__((visibility(default)))size_tZSTD_decompress_usingDDict(ZSTD_DCtx*dctx,void*dst,size_tdstCapacity,constvoid*src,size_tsrcSize,constZSTD_DDict*ddict);__attribute__((visibility(default)))unsignedZSTD_getDictID_fromDict(constvoid*dict,size_tdictSize);__attribute__((visibility(default)))unsignedZSTD_getDictID_fromDDict(constZSTD_DDict*ddict);__attribute__((visibility(default)))unsignedZSTD_getDictID_fromFrame(constvoid*src,size_tsrcSize);__attribute__((visibility(default)))size_tZSTD_CCtx_loadDictionary(ZSTD_CCtx*cctx,constvoid*dict,size_tdictSize);__attribute__((visibility(default)))size_tZSTD_CCtx_refCDict(ZSTD_CCtx*cctx,constZSTD_CDict*cdict);__attribute__((visibility(default)))size_tZSTD_CCtx_refPrefix(ZSTD_CCtx*cctx,constvoid*prefix,size_tprefixSize);__attribute__((visibility(default)))size_tZSTD_DCtx_loadDictionary(ZSTD_DCtx*dctx,constvoid*dict,size_tdictSize);__attribute__((visibility(default)))size_tZSTD_DCtx_refDDict(ZSTD_DCtx*dctx,constZSTD_DDict*ddict);__attribute__((visibility(default)))size_tZSTD_DCtx_refPrefix(ZSTD_DCtx*dctx,constvoid*prefix,size_tprefixSize);__attribute__((visibility(default)))size_tZSTD_sizeof_CCtx(constZSTD_CCtx*cctx);__attribute__((visibility(default)))size_tZSTD_sizeof_DCtx(constZSTD_DCtx*dctx);__attribute__((visibility(default)))size_tZSTD_sizeof_CStream(constZSTD_CStream*zcs);__attribute__((visibility(default)))size_tZSTD_sizeof_DStream(constZSTD_DStream*zds);__attribute__((visibility(default)))size_tZSTD_sizeof_CDict(constZSTD_CDict*cdict);__attribute__((visibility(default)))size_tZSTD_sizeof_DDict(constZSTD_DDict*ddict);;petscpkgver(); ============================================================================================= TESTING: checkSharedLibrary from config.packages.zstd(config/BuildSystem/config/package.py:953) By default we don't care about checking if the library is shared child config.packages.zstd 0.782171 ============================================================================================= TESTING: consistencyChecks from config.packages.yaml(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.yaml(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.yaml 0.001536 ============================================================================================= TESTING: consistencyChecks from config.packages.sycl(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.sycl(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.sycl 0.000839 ============================================================================================= TESTING: consistencyChecks from config.packages.ssl(config/BuildSystem/config/packages/ssl.py:31) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ssl(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.ssl 0.001876 ============================================================================================= TESTING: consistencyChecks from config.packages.sprng(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.sprng(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.sprng 0.001060 PETSc clone, checking for Sowing Checking for program /usr/local/opt/ccache/libexec/pdflatex...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/pdflatex...not found Checking for program /usr/local/bin/pdflatex...not found Checking for program /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/pdflatex...not found Checking for program /usr/local/sbin/pdflatex...not found Checking for program /Users/jacobfaibussowitsch/.cargo/bin/pdflatex...not found Checking for program /usr/bin/pdflatex...not found Checking for program /usr/sbin/pdflatex...not found Checking for program /bin/pdflatex...not found Checking for program /sbin/pdflatex...not found Checking for program /usr/X11R6/bin/pdflatex...not found Checking for program /opt/local/bin/pdflatex...not found Checking for program /Users/jacobfaibussowitsch/NoSync/petsc/lib/petsc/bin/win32fe/pdflatex...not found Checking for program /usr/local/opt/ccache/libexec/bfort...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/bfort...not found Checking for program /usr/local/bin/bfort...not found Checking for program /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/bfort...not found Checking for program /usr/local/sbin/bfort...not found Checking for program /Users/jacobfaibussowitsch/.cargo/bin/bfort...not found Checking for program /usr/bin/bfort...not found Checking for program /usr/sbin/bfort...not found Checking for program /bin/bfort...not found Checking for program /sbin/bfort...not found Checking for program /usr/X11R6/bin/bfort...not found Checking for program /opt/local/bin/bfort...not found Checking for program /Users/jacobfaibussowitsch/NoSync/petsc/lib/petsc/bin/win32fe/bfort...not found Checking for program /usr/local/opt/ccache/libexec/doctext...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/doctext...not found Checking for program /usr/local/bin/doctext...not found Checking for program /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/doctext...not found Checking for program /usr/local/sbin/doctext...not found Checking for program /Users/jacobfaibussowitsch/.cargo/bin/doctext...not found Checking for program /usr/bin/doctext...not found Checking for program /usr/sbin/doctext...not found Checking for program /bin/doctext...not found Checking for program /sbin/doctext...not found Checking for program /usr/X11R6/bin/doctext...not found Checking for program /opt/local/bin/doctext...not found Checking for program /Users/jacobfaibussowitsch/NoSync/petsc/lib/petsc/bin/win32fe/doctext...not found Checking for program /usr/local/opt/ccache/libexec/mapnames...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/mapnames...not found Checking for program /usr/local/bin/mapnames...not found Checking for program /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mapnames...not found Checking for program /usr/local/sbin/mapnames...not found Checking for program /Users/jacobfaibussowitsch/.cargo/bin/mapnames...not found Checking for program /usr/bin/mapnames...not found Checking for program /usr/sbin/mapnames...not found Checking for program /bin/mapnames...not found Checking for program /sbin/mapnames...not found Checking for program /usr/X11R6/bin/mapnames...not found Checking for program /opt/local/bin/mapnames...not found Checking for program /Users/jacobfaibussowitsch/NoSync/petsc/lib/petsc/bin/win32fe/mapnames...not found Checking for program /usr/local/opt/ccache/libexec/bib2html...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/bib2html...not found Checking for program /usr/local/bin/bib2html...not found Checking for program /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/bib2html...not found Checking for program /usr/local/sbin/bib2html...not found Checking for program /Users/jacobfaibussowitsch/.cargo/bin/bib2html...not found Checking for program /usr/bin/bib2html...not found Checking for program /usr/sbin/bib2html...not found Checking for program /bin/bib2html...not found Checking for program /sbin/bib2html...not found Checking for program /usr/X11R6/bin/bib2html...not found Checking for program /opt/local/bin/bib2html...not found Checking for program /Users/jacobfaibussowitsch/NoSync/petsc/lib/petsc/bin/win32fe/bib2html...not found Bfort not found. Installing sowing for FortranStubs ============================================================================================= TESTING: consistencyChecks from config.packages.sowing(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.sowing(config/BuildSystem/config/package.py:870) ============================================================================================= TESTING: configureLibrary from config.packages.sowing(config/BuildSystem/config/package.py:895) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional sowing Looking for SOWING at git.sowing, hg.sowing or a directory starting with ['petsc-pkg-sowing'] Found a copy of SOWING in git.sowing Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Executing: ['git', 'cat-file', '-e', 'v1.1.26-p1^{commit}'] Executing: ['git', 'rev-parse', 'v1.1.26-p1'] stdout: 674d5f3c1bf3ce6e1d744818915a0d723ce4dbe0 Executing: ['git', '-c', 'user.name=petsc-configure', '-c', 'user.email=petsc@configure', 'stash'] stdout: No local changes to save Executing: ['git', 'clean', '-f', '-d', '-x'] stdout: Removing pkg.gitcommit Removing sowing.petscconf Executing: ['git', 'checkout', '-f', '674d5f3c1bf3ce6e1d744818915a0d723ce4dbe0'] Makefile /Users/jacobfaibussowitsch/NoSync/petsc/master-arch-darwin-c-debug/lib/petsc/conf/pkg.conf.sowing has correct checksum Commit file /Users/jacobfaibussowitsch/NoSync/petsc/master-arch-darwin-c-debug/lib/petsc/conf/pkg.gitcommit.sowing has correct checksum Do not need to rebuild SOWING Not checking for library in Download SOWING: [] because no functions given to check for ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for optional headers [] in Download SOWING: ['/Users/jacobfaibussowitsch/NoSync/petsc/master-arch-darwin-c-debug/include', '/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/Users/jacobfaibussowitsch/NoSync/petsc/master-arch-darwin-c-debug/include', '/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Found header files [] in ['/Users/jacobfaibussowitsch/NoSync/petsc/master-arch-darwin-c-debug/include', '/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Checking for headers [] in Download SOWING: ['/Users/jacobfaibussowitsch/NoSync/petsc/master-arch-darwin-c-debug/include', '/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] ============================================================================================= TESTING: checkVersion from config.packages.sowing(config/BuildSystem/config/package.py:1021) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version For sowing unable to find version information since includes and version includes are missing skipping version check ============================================================================================= TESTING: checkSharedLibrary from config.packages.sowing(config/BuildSystem/config/package.py:953) By default we don't care about checking if the library is shared Checking for program /Users/jacobfaibussowitsch/NoSync/petsc/master-arch-darwin-c-debug/bin/bfort...found Defined make macro "BFORT" to "/Users/jacobfaibussowitsch/NoSync/petsc/master-arch-darwin-c-debug/bin/bfort" Checking for program /Users/jacobfaibussowitsch/NoSync/petsc/master-arch-darwin-c-debug/bin/doctext...found Defined make macro "DOCTEXT" to "/Users/jacobfaibussowitsch/NoSync/petsc/master-arch-darwin-c-debug/bin/doctext" Checking for program /Users/jacobfaibussowitsch/NoSync/petsc/master-arch-darwin-c-debug/bin/mapnames...found Defined make macro "MAPNAMES" to "/Users/jacobfaibussowitsch/NoSync/petsc/master-arch-darwin-c-debug/bin/mapnames" Checking for program /Users/jacobfaibussowitsch/NoSync/petsc/master-arch-darwin-c-debug/bin/bib2html...found Defined make macro "BIB2HTML" to "/Users/jacobfaibussowitsch/NoSync/petsc/master-arch-darwin-c-debug/bin/bib2html" Executing: /Users/jacobfaibussowitsch/NoSync/petsc/master-arch-darwin-c-debug/bin/bfort -version stdout: bfort (sowing) release 1.1.26 of Date unknown Running /Users/jacobfaibussowitsch/NoSync/petsc/master-arch-darwin-c-debug/bin/bfort to generate fortran stubs child config.packages.sowing 12.019296 ============================================================================================= TESTING: consistencyChecks from config.packages.revolve(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.revolve(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.revolve 0.002312 ============================================================================================= TESTING: consistencyChecks from config.packages.radau5(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.radau5(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.radau5 0.001571 ============================================================================================= TESTING: consistencyChecks from config.packages.pami(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.pami(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.pami 0.001632 ============================================================================================= TESTING: consistencyChecks from config.packages.opengles(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.opengles(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.opengles 0.001426 ============================================================================================= TESTING: consistencyChecks from config.packages.opencl(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.opencl(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.opencl 0.001391 ============================================================================================= TESTING: consistencyChecks from config.packages.muparser(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.muparser(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.muparser 0.001507 ============================================================================================= TESTING: consistencyChecks from config.packages.mpe(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mpe(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.mpe 0.001526 ============================================================================================= TESTING: consistencyChecks from config.packages.memkind(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.memkind(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.memkind 0.001323 ============================================================================================= TESTING: consistencyChecks from config.packages.libmesh(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.libmesh(config/BuildSystem/config/packages/libmesh.py:76) Defined make rule "libmesh-build" with dependencies "" and code [] Defined make rule "libmesh-install" with dependencies "" and code [] child config.packages.libmesh 0.002417 ============================================================================================= TESTING: consistencyChecks from config.packages.moose(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.moose(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.moose 0.001452 ============================================================================================= TESTING: consistencyChecks from config.packages.libjpeg(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.libjpeg(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.libjpeg 0.001651 Checking for program /usr/local/opt/ccache/libexec/lgrind...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/lgrind...not found Checking for program /usr/local/bin/lgrind...not found Checking for program /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/lgrind...not found Checking for program /usr/local/sbin/lgrind...not found Checking for program /Users/jacobfaibussowitsch/.cargo/bin/lgrind...not found Checking for program /usr/bin/lgrind...not found Checking for program /usr/sbin/lgrind...not found Checking for program /bin/lgrind...not found Checking for program /sbin/lgrind...not found Checking for program /usr/X11R6/bin/lgrind...not found Checking for program /opt/local/bin/lgrind...not found Checking for program /Users/jacobfaibussowitsch/NoSync/petsc/lib/petsc/bin/win32fe/lgrind...not found child config.packages.lgrind 0.002989 ============================================================================================= TESTING: consistencyChecks from config.packages.hip(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.hip(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.hip 0.001452 Looking for default Gmsh executable Checking for program /usr/local/opt/ccache/libexec/gmsh...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/gmsh...not found Checking for program /usr/local/bin/gmsh...not found Checking for program /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/gmsh...not found Checking for program /usr/local/sbin/gmsh...not found Checking for program /Users/jacobfaibussowitsch/.cargo/bin/gmsh...not found Checking for program /usr/bin/gmsh...not found Checking for program /usr/sbin/gmsh...not found Checking for program /bin/gmsh...not found Checking for program /sbin/gmsh...not found Checking for program /usr/X11R6/bin/gmsh...not found Checking for program /opt/local/bin/gmsh...not found Checking for program /Users/jacobfaibussowitsch/NoSync/petsc/lib/petsc/bin/win32fe/gmsh...not found child config.packages.gmsh 0.001301 ============================================================================================= TESTING: consistencyChecks from config.packages.gmp(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.gmp(config/BuildSystem/config/package.py:870) ============================================================================================= TESTING: configureLibrary from config.packages.gmp(config/BuildSystem/config/package.py:895) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional gmp Checking for library in Compiler specific search GMP: [] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [__gmpz_init] in library [] [] ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char __gmpz_init(); static void _check___gmpz_init() { __gmpz_init(); } int main() { _check___gmpz_init();; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "___gmpz_init", referenced from: __check___gmpz_init in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Checking for library in Compiler specific search GMP: ['libgmp.a'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [__gmpz_init] in library ['libgmp.a'] [] ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char __gmpz_init(); static void _check___gmpz_init() { __gmpz_init(); } int main() { _check___gmpz_init();; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -lgmp -lc++ -ldl Defined "HAVE_LIBGMP" to "1" Checking for optional headers [] in Compiler specific search GMP: ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Found header files [] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Checking for headers ['gmp.h'] in Compiler specific search GMP: ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['gmp.h'] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Checking include with compiler flags var CPPFLAGS ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.zstd -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['gmp.h'] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] ============================================================================================= TESTING: checkVersion from config.packages.gmp(config/BuildSystem/config/package.py:1021) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.gmp(config/BuildSystem/config/package.py:953) By default we don't care about checking if the library is shared child config.packages.gmp 0.750602 ============================================================================================= TESTING: consistencyChecks from config.packages.mpfr(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.mpfr(config/BuildSystem/config/package.py:870) ============================================================================================= TESTING: configureLibrary from config.packages.mpfr(config/BuildSystem/config/package.py:895) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional mpfr Checking for library in Compiler specific search MPFR: [] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [mpfr_get_version] in library [] ['libgmp.a'] ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char mpfr_get_version(); static void _check_mpfr_get_version() { mpfr_get_version(); } int main() { _check_mpfr_get_version();; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -lgmp -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_mpfr_get_version", referenced from: __check_mpfr_get_version in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Checking for library in Compiler specific search MPFR: ['libmpfr.a'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [mpfr_get_version] in library ['libmpfr.a'] ['libgmp.a'] ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char mpfr_get_version(); static void _check_mpfr_get_version() { mpfr_get_version(); } int main() { _check_mpfr_get_version();; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -lmpfr -lgmp -lc++ -ldl Defined "HAVE_LIBMPFR" to "1" Checking for optional headers [] in Compiler specific search MPFR: ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Found header files [] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Checking for headers ['mpfr.h'] in Compiler specific search MPFR: ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['mpfr.h'] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Checking include with compiler flags var CPPFLAGS ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.zstd -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['mpfr.h'] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] ============================================================================================= TESTING: checkVersion from config.packages.mpfr(config/BuildSystem/config/package.py:1021) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.mpfr(config/BuildSystem/config/package.py:953) By default we don't care about checking if the library is shared child config.packages.mpfr 0.735878 ============================================================================================= TESTING: consistencyChecks from config.packages.giflib(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.giflib(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.giflib 0.001499 ============================================================================================= TESTING: consistencyChecks from config.packages.cub(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.cub(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.cub 0.000904 ============================================================================================= TESTING: consistencyChecks from config.packages.ctetgen(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.ctetgen(config/BuildSystem/config/package.py:870) ============================================================================================= TESTING: configureLibrary from config.packages.ctetgen(config/BuildSystem/config/packages/ctetgen.py:24) Since ctergen cannot be built until after PETSc configure is complete we need to just assume the downloaded library will work Looking for CTETGEN at git.ctetgen, hg.ctetgen or a directory starting with ['ctetgen', 'petsc-ctetgen'] Found a copy of CTETGEN in git.ctetgen Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Executing: ['git', 'cat-file', '-e', 'ctetgen-0.9^{commit}'] Executing: ['git', 'rev-parse', 'ctetgen-0.9'] stdout: d14ecd68b4372a10c717fefc37d3c3ff457c2871 Executing: ['git', '-c', 'user.name=petsc-configure', '-c', 'user.email=petsc@configure', 'stash'] stdout: No local changes to save Executing: ['git', 'clean', '-f', '-d', '-x'] stdout: Removing ctetgen.o Removing libctetgen.a Removing pkg.gitcommit Removing predicates.o Executing: ['git', 'checkout', '-f', 'd14ecd68b4372a10c717fefc37d3c3ff457c2871'] ============================================================================================= TESTING: checkVersion from config.packages.ctetgen(config/BuildSystem/config/package.py:1021) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.ctetgen(config/BuildSystem/config/package.py:953) By default we don't care about checking if the library is shared child config.packages.ctetgen 0.052998 ============================================================================================= TESTING: consistencyChecks from config.packages.concurrencykit(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.concurrencykit(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.concurrencykit 0.001311 ============================================================================================= TESTING: locateC2html from config.packages.c2html(config/BuildSystem/config/packages/c2html.py:30) Looking for default C2html executable Checking for program /usr/local/opt/ccache/libexec/c2html...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/c2html...not found Checking for program /usr/local/bin/c2html...not found Checking for program /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/c2html...not found Checking for program /usr/local/sbin/c2html...not found Checking for program /Users/jacobfaibussowitsch/.cargo/bin/c2html...not found Checking for program /usr/bin/c2html...not found Checking for program /usr/sbin/c2html...not found Checking for program /bin/c2html...not found Checking for program /sbin/c2html...not found Checking for program /usr/X11R6/bin/c2html...not found Checking for program /opt/local/bin/c2html...not found Checking for program /Users/jacobfaibussowitsch/NoSync/petsc/lib/petsc/bin/win32fe/c2html...not found child config.packages.c2html 0.002346 ============================================================================================= TESTING: consistencyChecks from config.packages.boost(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.boost(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.boost 0.001241 ============================================================================================= TESTING: consistencyChecks from config.packages.silo(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.silo(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.silo 0.000924 ============================================================================================= TESTING: consistencyChecks from config.packages.Random123(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Random123(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.Random123 0.001054 ============================================================================================= TESTING: consistencyChecks from config.packages.PARTY(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.PARTY(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.PARTY 0.001135 ============================================================================================= TESTING: consistencyChecks from config.packages.Matlab(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Matlab(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.Matlab 0.000984 ============================================================================================= TESTING: consistencyChecks from config.packages.MatlabEngine(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.MatlabEngine(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.MatlabEngine 0.001201 ============================================================================================= TESTING: consistencyChecks from config.packages.Mathematica(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Mathematica(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.Mathematica 0.000976 ============================================================================================= TESTING: consistencyChecks from config.packages.regex(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.regex(config/BuildSystem/config/package.py:870) ============================================================================================= TESTING: configureLibrary from config.packages.regex(config/BuildSystem/config/package.py:895) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional regex Checking for library in Compiler specific search REGEX: [] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [regexec regcomp regfree] in library [] [] ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char regexec(); static void _check_regexec() { regexec(); } char regcomp(); static void _check_regcomp() { regcomp(); } char regfree(); static void _check_regfree() { regfree(); } int main() { _check_regexec(); _check_regcomp(); _check_regfree();; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -lc++ -ldl Checking for optional headers [] in Compiler specific search REGEX: ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Found header files [] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Checking for headers ['regex.h'] in Compiler specific search REGEX: ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['regex.h'] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Checking include with compiler flags var CPPFLAGS ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.zstd -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['regex.h'] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] ============================================================================================= TESTING: checkVersion from config.packages.regex(config/BuildSystem/config/package.py:1021) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.regex(config/BuildSystem/config/package.py:953) By default we don't care about checking if the library is shared child config.packages.regex 0.414009 ============================================================================================= TESTING: consistencyChecks from config.packages.libceed(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.libceed(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.libceed 0.001499 Defined "PYTHON_EXE" to ""/usr/local/opt/python@3.9/bin/python3.9"" Executing: /usr/local/opt/python@3.9/bin/python3.9 -c "import Cython" Executing: /usr/local/opt/python@3.9/bin/python3.9 -c "import numpy" child config.packages.python 0.307686 ============================================================================================= TESTING: consistencyChecks from config.packages.petsc4py(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.petsc4py(config/BuildSystem/config/packages/petsc4py.py:104) Defined make rule "petsc4py-build" with dependencies "" and code [] Defined make rule "petsc4py-install" with dependencies "" and code [] Defined make rule "petsc4pytest" with dependencies "" and code [] child config.packages.petsc4py 0.003054 ============================================================================================= TESTING: consistencyChecks from config.packages.mpi4py(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mpi4py(config/BuildSystem/config/packages/mpi4py.py:74) Defined make rule "mpi4py-build" with dependencies "" and code [] Defined make rule "mpi4py-install" with dependencies "" and code [] child config.packages.mpi4py 0.002432 ============================================================================================= TESTING: consistencyChecks from config.packages.slepc(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.slepc(config/BuildSystem/config/packages/slepc.py:100) Defined make rule "slepc-build" with dependencies "" and code [] Defined make rule "slepc-install" with dependencies "" and code [] child config.packages.slepc 0.002610 ============================================================================================= TESTING: consistencyChecks from config.packages.opengl(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.opengl(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.opengl 0.001250 ============================================================================================= TESTING: consistencyChecks from config.packages.glut(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.glut(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.glut 0.001047 ============================================================================================= TESTING: consistencyChecks from config.packages.CoDiPack(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.CoDiPack(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.CoDiPack 0.001118 ============================================================================================= TESTING: consistencyChecks from config.packages.adblaslapack(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.adblaslapack(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.adblaslapack 0.001021 child config.packages.cxxlibs 0.000015 ============================================================================================= TESTING: locateCMake from config.packages.cmake(config/BuildSystem/config/packages/cmake.py:48) Looking for default CMake executable Checking for program /usr/local/opt/ccache/libexec/cmake...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/cmake...not found Checking for program /usr/local/bin/cmake...found Defined make macro "CMAKE" to "/usr/local/bin/cmake" Looking for default CTest executable Checking for program /usr/local/opt/ccache/libexec/ctest...not found Checking for program /usr/local/opt/gnu-sed/libexec/gnubin/ctest...not found Checking for program /usr/local/bin/ctest...found Defined make macro "CTEST" to "/usr/local/bin/ctest" Executing: /usr/local/bin/cmake --version stdout: cmake version 3.19.2 CMake suite maintained and supported by Kitware (kitware.com/cmake). cmake version found 3.19.2 child config.packages.cmake 0.042679 ============================================================================================= TESTING: consistencyChecks from config.packages.unittestcpp(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.unittestcpp(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.unittestcpp 0.001973 ============================================================================================= TESTING: consistencyChecks from config.packages.googletest(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.googletest(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.googletest 0.001269 ============================================================================================= TESTING: consistencyChecks from config.packages.eigen(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.eigen(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.eigen 0.000958 ============================================================================================= TESTING: consistencyChecks from config.packages.szlib(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.szlib(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.szlib 0.000887 ============================================================================================= TESTING: consistencyChecks from config.packages.zlib(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.zlib(config/BuildSystem/config/package.py:870) ============================================================================================= TESTING: configureLibrary from config.packages.zlib(config/BuildSystem/config/package.py:895) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional zlib Looking for ZLIB at git.zlib, hg.zlib or a directory starting with ['zlib'] Found a copy of ZLIB in zlib-1.2.11 Detected Darwin/MacOSX Catalina OS Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc --help | head -n 500 Detected CLANG compiler Makefile /Users/jacobfaibussowitsch/NoSync/petsc/master-arch-darwin-c-debug/lib/petsc/conf/pkg.conf.zlib has correct checksum Do not need to rebuild ZLIB Checking for library in Download ZLIB: ['/Users/jacobfaibussowitsch/NoSync/petscpackages/lib/libz.a'] Contents: ['bin', 'SEACASProjRepoVersion.txt', 'include', 'lib', 'share'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [compress uncompress] in library ['/Users/jacobfaibussowitsch/NoSync/petscpackages/lib/libz.a'] [] ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char compress(); static void _check_compress() { compress(); } char uncompress(); static void _check_uncompress() { uncompress(); } int main() { _check_compress(); _check_uncompress();; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lz -lc++ -ldl Defined "HAVE_LIBZ" to "1" Checking for optional headers [] in Download ZLIB: ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Found header files [] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Checking for headers ['zlib.h'] in Download ZLIB: ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['zlib.h'] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Checking include with compiler flags var CPPFLAGS ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.zstd -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['zlib.h'] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] ============================================================================================= TESTING: checkVersion from config.packages.zlib(config/BuildSystem/config/package.py:1021) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.zlib(config/BuildSystem/config/package.py:953) By default we don't care about checking if the library is shared child config.packages.zlib 0.527638 child config.packages.mathlib 0.000037 ============================================================================================= TESTING: consistencyChecks from config.packages.tetgen(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.tetgen(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.tetgen 0.002620 ============================================================================================= TESTING: consistencyChecks from config.packages.tchem(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.tchem(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.tchem 0.001305 ============================================================================================= TESTING: consistencyChecks from config.packages.saws(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.saws(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.saws 0.001827 ============================================================================================= TESTING: consistencyChecks from config.packages.libpng(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.libpng(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.libpng 0.001473 ============================================================================================= TESTING: consistencyChecks from config.packages.combblas(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.combblas(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.combblas 0.001994 ============================================================================================= TESTING: consistencyChecks from config.packages.metis(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.metis(config/BuildSystem/config/package.py:870) ============================================================================================= TESTING: configureLibrary from config.packages.metis(config/BuildSystem/config/packages/metis.py:49) ================================================================================== Checking for a functional metis Looking for METIS at git.metis, hg.metis or a directory starting with ['petsc-pkg-metis'] Found a copy of METIS in git.metis Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Executing: ['git', 'cat-file', '-e', 'v5.1.0-p10^{commit}'] Executing: ['git', 'rev-parse', 'v5.1.0-p10'] stdout: c8d2dc1e751ef7ebe5e221156d7572d7cea26990 Executing: ['git', '-c', 'user.name=petsc-configure', '-c', 'user.email=petsc@configure', 'stash'] stdout: No local changes to save Executing: ['git', 'clean', '-f', '-d', '-x'] stdout: Removing metis.petscconf Removing pkg.gitcommit Executing: ['git', 'checkout', '-f', 'c8d2dc1e751ef7ebe5e221156d7572d7cea26990'] Detected Darwin/MacOSX Catalina OS Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc --help | head -n 500 Detected CLANG compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -V Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 --version stdout: GNU Fortran (GCC) 10.2.0 Copyright (C) 2020 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Detected GFortran100plus compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -V Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 --version stdout: GNU Fortran (GCC) 10.2.0 Copyright (C) 2020 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Detected GFortran100plus compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -V Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 --version stdout: GNU Fortran (GCC) 10.2.0 Copyright (C) 2020 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Detected GFortran100plus compiler Makefile /Users/jacobfaibussowitsch/NoSync/petsc/master-arch-darwin-c-debug/lib/petsc/conf/pkg.conf.metis has correct checksum Commit file /Users/jacobfaibussowitsch/NoSync/petsc/master-arch-darwin-c-debug/lib/petsc/conf/pkg.gitcommit.metis has correct checksum Do not need to rebuild METIS Checking for library in Download METIS: ['/Users/jacobfaibussowitsch/NoSync/petscpackages/lib/libmetis.a'] Contents: ['bin', 'SEACASProjRepoVersion.txt', 'include', 'lib', 'share'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [METIS_PartGraphKway] in library ['/Users/jacobfaibussowitsch/NoSync/petscpackages/lib/libmetis.a'] [] ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char METIS_PartGraphKway(); static void _check_METIS_PartGraphKway() { METIS_PartGraphKway(); } int main() { _check_METIS_PartGraphKway();; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lmetis -lc++ -ldl Defined "HAVE_LIBMETIS" to "1" Checking for optional headers [] in Download METIS: ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Found header files [] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Checking for headers ['metis.h'] in Download METIS: ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['metis.h'] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Checking include with compiler flags var CPPFLAGS ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.zstd -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['metis.h'] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] ===== Checking compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis/conftest.c:8:7: warning: extra tokens at end of #endif directive [-Wextra-tokens] #endif; ^ // 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include "metis.h" int main() { #if (IDXTYPEWIDTH != 32) #error incompatible IDXTYPEWIDTH #endif; return 0; } ============================================================================================= TESTING: checkVersion from config.packages.metis(config/BuildSystem/config/package.py:1021) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "metis.h" ;petscpkgver(METIS_VER_MAJOR.METIS_VER_MINOR.METIS_VER_SUBMINOR); Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.zstd -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis/conftest.c For metis need <= 5.1.0 <= ============================================================================================= TESTING: checkSharedLibrary from config.packages.metis(config/BuildSystem/config/package.py:953) By default we don't care about checking if the library is shared child config.packages.metis 0.942145 ============================================================================================= TESTING: consistencyChecks from config.packages.pragmatic(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.pragmatic(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.pragmatic 0.001434 ============================================================================================= TESTING: consistencyChecks from config.packages.parmetis(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.parmetis(config/BuildSystem/config/package.py:870) ============================================================================================= TESTING: configureLibrary from config.packages.parmetis(config/BuildSystem/config/packages/parmetis.py:41) ================================================================================== Checking for a functional parmetis Looking for PARMETIS at git.parmetis, hg.parmetis or a directory starting with ['petsc-pkg-parmetis'] Found a copy of PARMETIS in git.parmetis Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Executing: ['git', 'cat-file', '-e', 'v4.0.3-p6^{commit}'] Executing: ['git', 'rev-parse', 'v4.0.3-p6'] stdout: 475d8facbb324527c205f1f78a7c90bd160bddcd Executing: ['git', '-c', 'user.name=petsc-configure', '-c', 'user.email=petsc@configure', 'stash'] stdout: No local changes to save Executing: ['git', 'clean', '-f', '-d', '-x'] stdout: Removing parmetis.petscconf Removing pkg.gitcommit Executing: ['git', 'checkout', '-f', '475d8facbb324527c205f1f78a7c90bd160bddcd'] Detected Darwin/MacOSX Catalina OS Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc --help | head -n 500 Detected CLANG compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -V Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 --version stdout: GNU Fortran (GCC) 10.2.0 Copyright (C) 2020 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Detected GFortran100plus compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -V Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 --version stdout: GNU Fortran (GCC) 10.2.0 Copyright (C) 2020 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Detected GFortran100plus compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -V Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 --version stdout: GNU Fortran (GCC) 10.2.0 Copyright (C) 2020 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Detected GFortran100plus compiler Makefile /Users/jacobfaibussowitsch/NoSync/petsc/master-arch-darwin-c-debug/lib/petsc/conf/pkg.conf.parmetis has correct checksum Commit file /Users/jacobfaibussowitsch/NoSync/petsc/master-arch-darwin-c-debug/lib/petsc/conf/pkg.gitcommit.parmetis has correct checksum Do not need to rebuild PARMETIS Checking for library in Download PARMETIS: ['/Users/jacobfaibussowitsch/NoSync/petscpackages/lib/libparmetis.a'] Contents: ['bin', 'SEACASProjRepoVersion.txt', 'include', 'lib', 'share'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [ParMETIS_V3_PartKway] in library ['/Users/jacobfaibussowitsch/NoSync/petscpackages/lib/libparmetis.a'] ['/Users/jacobfaibussowitsch/NoSync/petscpackages/lib/libmetis.a'] ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ParMETIS_V3_PartKway(); static void _check_ParMETIS_V3_PartKway() { ParMETIS_V3_PartKway(); } int main() { _check_ParMETIS_V3_PartKway();; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lparmetis -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lmetis -lc++ -ldl Defined "HAVE_LIBPARMETIS" to "1" Checking for optional headers [] in Download PARMETIS: ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Found header files [] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Checking for headers ['parmetis.h'] in Download PARMETIS: ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['parmetis.h'] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Checking include with compiler flags var CPPFLAGS ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include', '/Users/jacobfaibussowitsch/NoSync/petscpackages/include', '/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.zstd -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['parmetis.h'] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Checking for functions [ParMETIS_ComputeVertexSeparator] in library ['/Users/jacobfaibussowitsch/NoSync/petscpackages/lib/libparmetis.a'] ['/Users/jacobfaibussowitsch/NoSync/petscpackages/lib/libmetis.a'] ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ParMETIS_ComputeVertexSeparator(); static void _check_ParMETIS_ComputeVertexSeparator() { ParMETIS_ComputeVertexSeparator(); } int main() { _check_ParMETIS_ComputeVertexSeparator();; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lparmetis -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lmetis -lc++ -ldl Defined "HAVE_LIBPARMETIS" to "1" ============================================================================================= TESTING: checkVersion from config.packages.parmetis(config/BuildSystem/config/package.py:1021) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "parmetis.h" ;petscpkgver(PARMETIS_MAJOR_VERSION.PARMETIS_MINOR_VERSION.PARMETIS_SUBMINOR_VERSION); Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.zstd -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.parmetis -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.parmetis/conftest.c For parmetis need <= 4.0.3 <= ============================================================================================= TESTING: checkSharedLibrary from config.packages.parmetis(config/BuildSystem/config/package.py:953) By default we don't care about checking if the library is shared child config.packages.parmetis 1.162305 ============================================================================================= TESTING: consistencyChecks from config.packages.Chaco(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.Chaco(config/BuildSystem/config/package.py:870) ============================================================================================= TESTING: configureLibrary from config.packages.Chaco(config/BuildSystem/config/packages/Chaco.py:57) ================================================================================== Checking for a functional Chaco Looking for CHACO at git.chaco, hg.chaco or a directory starting with ['petsc-pkg-chaco', 'Chaco'] Found a copy of CHACO in git.chaco Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Executing: ['git', 'cat-file', '-e', 'v2.2-p3^{commit}'] Executing: ['git', 'rev-parse', 'v2.2-p3'] stdout: 6f78fbc53cbf6e20f84104c023516b1b2a730400 Executing: ['git', '-c', 'user.name=petsc-configure', '-c', 'user.email=petsc@configure', 'stash'] stdout: No local changes to save Executing: ['git', 'clean', '-f', '-d', '-x'] stdout: Removing make.inc Removing pkg.gitcommit Executing: ['git', 'checkout', '-f', '6f78fbc53cbf6e20f84104c023516b1b2a730400'] chacoDir = /Users/jacobfaibussowitsch/NoSync/petsc/master-arch-darwin-c-debug/externalpackages/git.chaco installDir /Users/jacobfaibussowitsch/NoSync/petscpackages Detected Darwin/MacOSX Catalina OS Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc --help | head -n 500 Detected CLANG compiler Detected Darwin/MacOSX Catalina OS Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc --help | head -n 500 Detected CLANG compiler Makefile /Users/jacobfaibussowitsch/NoSync/petsc/master-arch-darwin-c-debug/lib/petsc/conf/pkg.conf.chaco has correct checksum Commit file /Users/jacobfaibussowitsch/NoSync/petsc/master-arch-darwin-c-debug/lib/petsc/conf/pkg.gitcommit.chaco has correct checksum Do not need to rebuild CHACO Checking for library in Download CHACO: ['/Users/jacobfaibussowitsch/NoSync/petscpackages/lib/libchaco.a'] Contents: ['bin', 'SEACASProjRepoVersion.txt', 'include', 'lib', 'share'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [interface] in library ['/Users/jacobfaibussowitsch/NoSync/petscpackages/lib/libchaco.a'] [] ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char interface(); static void _check_interface() { interface(); } int main() { _check_interface();; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lchaco -lc++ -ldl Defined "HAVE_LIBCHACO" to "1" Checking for optional headers [] in Download CHACO: ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Found header files [] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Checking for headers [] in Download CHACO: ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Checking for functions [ddot_chaco] in library ['/Users/jacobfaibussowitsch/NoSync/petscpackages/lib/libchaco.a'] [] ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_chaco(); static void _check_ddot_chaco() { ddot_chaco(); } int main() { _check_ddot_chaco();; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lchaco -lc++ -ldl Defined "HAVE_LIBCHACO" to "1" ============================================================================================= TESTING: checkVersion from config.packages.Chaco(config/BuildSystem/config/package.py:1021) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.Chaco(config/BuildSystem/config/package.py:953) By default we don't care about checking if the library is shared child config.packages.Chaco 0.873220 Executing: uname -s stdout: Darwin ============================================================================================= TESTING: consistencyChecks from config.packages.hdf5(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.hdf5(config/BuildSystem/config/package.py:870) ============================================================================================= TESTING: configureLibrary from config.packages.hdf5(config/BuildSystem/config/packages/hdf5.py:83) ================================================================================== Checking for a functional hdf5 Looking for HDF5 at git.hdf5, hg.hdf5 or a directory starting with ['hdf5'] Found a copy of HDF5 in hdf5-1.12.0 Detected Darwin/MacOSX Catalina OS Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc --help | head -n 500 Detected CLANG compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -v stdout: mpifort for MPICH version 3.3.2 Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -V Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 --version stdout: GNU Fortran (GCC) 10.2.0 Copyright (C) 2020 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Detected GFortran100plus compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -V Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 --version stdout: GNU Fortran (GCC) 10.2.0 Copyright (C) 2020 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Detected GFortran100plus compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -V Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 --version stdout: GNU Fortran (GCC) 10.2.0 Copyright (C) 2020 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Detected GFortran100plus compiler Makefile /Users/jacobfaibussowitsch/NoSync/petsc/master-arch-darwin-c-debug/lib/petsc/conf/pkg.conf.hdf5 has correct checksum Do not need to rebuild HDF5 Checking for library in Download HDF5: ['/Users/jacobfaibussowitsch/NoSync/petscpackages/lib/libhdf5hl_fortran.a', 'libhdf5_fortran.a', 'libhdf5_hl.a', 'libhdf5.a'] Contents: ['bin', 'SEACASProjRepoVersion.txt', 'include', 'lib', 'share'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [H5T_init] in library ['/Users/jacobfaibussowitsch/NoSync/petscpackages/lib/libhdf5hl_fortran.a', 'libhdf5_fortran.a', 'libhdf5_hl.a', 'libhdf5.a'] ['/Users/jacobfaibussowitsch/NoSync/petscpackages/lib/libz.a'] ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char H5T_init(); static void _check_H5T_init() { H5T_init(); } int main() { _check_H5T_init();; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lz -lc++ -ldl Defined "HAVE_LIBHDF5HL_FORTRAN" to "1" Defined "HAVE_LIBHDF5_FORTRAN" to "1" Defined "HAVE_LIBHDF5_HL" to "1" Defined "HAVE_LIBHDF5" to "1" Checking for optional headers [] in Download HDF5: ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Found header files [] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Checking for headers ['hdf5.h'] in Download HDF5: ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['hdf5.h'] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Checking include with compiler flags var CPPFLAGS ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include', '/Users/jacobfaibussowitsch/NoSync/petscpackages/include', '/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.zstd -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.parmetis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['hdf5.h'] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "H5pubconf.h" #if defined(H5_HAVE_ZLIB_H) foundbeast #endif Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.zstd -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.parmetis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.hdf5 -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.hdf5/conftest.c Defined "HDF5_HAVE_ZLIB" to "1" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "H5pubconf.h" #if defined(H5_HAVE_SZLIB_H) foundbeast #endif Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.zstd -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.parmetis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.hdf5 -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.hdf5/conftest.c Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "H5pubconf.h" #if defined(H5_HAVE_PARALLEL) foundbeast #endif Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.zstd -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.parmetis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.hdf5 -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.hdf5/conftest.c Defined "HDF5_HAVE_PARALLEL" to "1" ============================================================================================= TESTING: checkVersion from config.packages.hdf5(config/BuildSystem/config/package.py:1021) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "hdf5.h" ;petscpkgver(H5_VERSION); Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.zstd -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.parmetis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.hdf5 -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.hdf5/conftest.c For hdf5 need 1.8 <= 1.12.0 <= ============================================================================================= TESTING: checkSharedLibrary from config.packages.hdf5(config/BuildSystem/config/package.py:953) By default we don't care about checking if the library is shared child config.packages.hdf5 1.061897 ============================================================================================= TESTING: consistencyChecks from config.packages.med(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.med(config/BuildSystem/config/package.py:870) ============================================================================================= TESTING: configureLibrary from config.packages.med(config/BuildSystem/config/package.py:895) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional med Looking for MED at git.med, hg.med or a directory starting with ['petsc-pkg-med'] Found a copy of MED in git.med Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Executing: ['git', 'fetch'] Executing: ['git', 'rev-parse', 'origin/maint-4.0.0'] stdout: 17bebeb8306e6c1dd380f0a8f0be19f2ed9b04e5 Executing: ['git', '-c', 'user.name=petsc-configure', '-c', 'user.email=petsc@configure', 'stash'] stdout: No local changes to save Executing: ['git', 'clean', '-f', '-d', '-x'] stdout: Removing med.petscconf Removing pkg.gitcommit Executing: ['git', 'checkout', '-f', '17bebeb8306e6c1dd380f0a8f0be19f2ed9b04e5'] Detected Darwin/MacOSX Catalina OS Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc --help | head -n 500 Detected CLANG compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -V Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 --version stdout: GNU Fortran (GCC) 10.2.0 Copyright (C) 2020 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Detected GFortran100plus compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -V Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 --version stdout: GNU Fortran (GCC) 10.2.0 Copyright (C) 2020 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Detected GFortran100plus compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -V Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 --version stdout: GNU Fortran (GCC) 10.2.0 Copyright (C) 2020 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Detected GFortran100plus compiler Makefile /Users/jacobfaibussowitsch/NoSync/petsc/master-arch-darwin-c-debug/lib/petsc/conf/pkg.conf.med has correct checksum Commit file /Users/jacobfaibussowitsch/NoSync/petsc/master-arch-darwin-c-debug/lib/petsc/conf/pkg.gitcommit.med has correct checksum Do not need to rebuild MED Checking for library in Download MED: ['/Users/jacobfaibussowitsch/NoSync/petscpackages/lib/libmedC.a', 'libmed.a'] Contents: ['bin', 'SEACASProjRepoVersion.txt', 'include', 'lib', 'share'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MEDfileOpen] in library ['/Users/jacobfaibussowitsch/NoSync/petscpackages/lib/libmedC.a', 'libmed.a'] ['/Users/jacobfaibussowitsch/NoSync/petscpackages/lib/libhdf5hl_fortran.a', 'libhdf5_fortran.a', 'libhdf5_hl.a', 'libhdf5.a', '/Users/jacobfaibussowitsch/NoSync/petscpackages/lib/libz.a'] ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MEDfileOpen(); static void _check_MEDfileOpen() { MEDfileOpen(); } int main() { _check_MEDfileOpen();; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lmedC -lmed -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lz -lc++ -ldl Defined "HAVE_LIBMEDC" to "1" Defined "HAVE_LIBMED" to "1" Checking for optional headers [] in Download MED: ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Found header files [] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Checking for headers ['med.h'] in Download MED: ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['med.h'] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Checking include with compiler flags var CPPFLAGS ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include', '/Users/jacobfaibussowitsch/NoSync/petscpackages/include', '/Users/jacobfaibussowitsch/NoSync/petscpackages/include', '/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.zstd -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.parmetis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.hdf5 -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['med.h'] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] ============================================================================================= TESTING: checkVersion from config.packages.med(config/BuildSystem/config/package.py:1021) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.med(config/BuildSystem/config/package.py:953) By default we don't care about checking if the library is shared child config.packages.med 1.294102 ============================================================================================= TESTING: consistencyChecks from config.packages.cgns(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.cgns(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.cgns 0.001393 ============================================================================================= TESTING: consistencyChecks from config.packages.ascem-io(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ascem-io(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.ascem-io 0.001017 ============================================================================================= TESTING: consistencyChecks from config.packages.pflotran(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.pflotran(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.pflotran 0.000975 ============================================================================================= TESTING: consistencyChecks from config.packages.alquimia(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.alquimia(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.alquimia 0.000956 ============================================================================================= TESTING: consistencyChecks from config.packages.SAMRAI(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.SAMRAI(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.SAMRAI 0.001011 ============================================================================================= TESTING: consistencyChecks from config.packages.ADIOS2(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ADIOS2(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.ADIOS2 0.000933 child config.packages.flibs 0.000017 ============================================================================================= TESTING: consistencyChecks from config.packages.pnetcdf(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.pnetcdf(config/BuildSystem/config/package.py:870) ============================================================================================= TESTING: configureLibrary from config.packages.pnetcdf(config/BuildSystem/config/package.py:895) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional pnetcdf Looking for PNETCDF at git.pnetcdf, hg.pnetcdf or a directory starting with ['pnetcdf'] Found a copy of PNETCDF in git.pnetcdf Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Executing: ['git', 'cat-file', '-e', 'checkpoint.1.12.1^{commit}'] Executing: ['git', 'rev-parse', 'checkpoint.1.12.1'] stdout: b258b90c3866f67d5d7afbaf1d7184d093f3f69c Executing: ['git', '-c', 'user.name=petsc-configure', '-c', 'user.email=petsc@configure', 'stash'] stdout: No local changes to save Executing: ['git', 'clean', '-f', '-d', '-x'] stdout: Removing pkg.gitcommit Removing pnetcdf.petscconf Executing: ['git', 'checkout', '-f', 'b258b90c3866f67d5d7afbaf1d7184d093f3f69c'] Detected Darwin/MacOSX Catalina OS Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc --help | head -n 500 Detected CLANG compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -v stdout: mpifort for MPICH version 3.3.2 Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -V Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 --version stdout: GNU Fortran (GCC) 10.2.0 Copyright (C) 2020 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Detected GFortran100plus compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -V Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 --version stdout: GNU Fortran (GCC) 10.2.0 Copyright (C) 2020 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Detected GFortran100plus compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -V Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 --version stdout: GNU Fortran (GCC) 10.2.0 Copyright (C) 2020 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Detected GFortran100plus compiler Makefile /Users/jacobfaibussowitsch/NoSync/petsc/master-arch-darwin-c-debug/lib/petsc/conf/pkg.conf.pnetcdf has correct checksum Commit file /Users/jacobfaibussowitsch/NoSync/petsc/master-arch-darwin-c-debug/lib/petsc/conf/pkg.gitcommit.pnetcdf has correct checksum Do not need to rebuild PNETCDF Checking for library in Download PNETCDF: ['/Users/jacobfaibussowitsch/NoSync/petscpackages/lib/libpnetcdf.a'] Contents: ['bin', 'SEACASProjRepoVersion.txt', 'include', 'lib', 'share'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [ncmpi_create] in library ['/Users/jacobfaibussowitsch/NoSync/petscpackages/lib/libpnetcdf.a'] ['-lc++', '-ldl', '-Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib', '-L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib', '-lmpifort', '-lmpi', '-lpmpi', '-lgfortran', '-Wl,-rpath,/usr/local/lib', '-L/usr/local/lib', '-Wl,-rpath,/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0', '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0', '-Wl,-rpath,/usr/local/gfortran/lib', '-L/usr/local/gfortran/lib', '-lgfortran', '-lquadmath', '-lm'] ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ncmpi_create(); static void _check_ncmpi_create() { ncmpi_create(); } int main() { _check_ncmpi_create();; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lpnetcdf -lc++ -ldl -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lmpifort -lmpi -lpmpi -lgfortran -Wl,-rpath,/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -Wl,-rpath,/usr/local/gfortran/lib -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -lc++ -ldl Defined "HAVE_LIBPNETCDF" to "1" Checking for optional headers [] in Download PNETCDF: ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Found header files [] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Checking for headers ['pnetcdf.h'] in Download PNETCDF: ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['pnetcdf.h'] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Checking include with compiler flags var CPPFLAGS ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include', '/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.zstd -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.parmetis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.hdf5 -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['pnetcdf.h'] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] ============================================================================================= TESTING: checkVersion from config.packages.pnetcdf(config/BuildSystem/config/package.py:1021) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "pnetcdf.h" ;petscpkgver(PNETCDF_VERSION); Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.zstd -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.parmetis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.hdf5 -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pnetcdf -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pnetcdf/conftest.c For pnetcdf need <= 1.12.1 <= ============================================================================================= TESTING: checkSharedLibrary from config.packages.pnetcdf(config/BuildSystem/config/package.py:953) By default we don't care about checking if the library is shared child config.packages.pnetcdf 0.989120 ============================================================================================= TESTING: consistencyChecks from config.packages.netcdf(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.netcdf(config/BuildSystem/config/package.py:870) ============================================================================================= TESTING: configureLibrary from config.packages.netcdf(config/BuildSystem/config/package.py:895) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional netcdf Looking for NETCDF at git.netcdf, hg.netcdf or a directory starting with ['netcdf'] Found a copy of NETCDF in netcdf-c-4.5.0 Detected Darwin/MacOSX Catalina OS Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc --help | head -n 500 Detected CLANG compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -v stdout: mpifort for MPICH version 3.3.2 Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -V Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 --version stdout: GNU Fortran (GCC) 10.2.0 Copyright (C) 2020 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Detected GFortran100plus compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -V Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 --version stdout: GNU Fortran (GCC) 10.2.0 Copyright (C) 2020 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Detected GFortran100plus compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -V Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 --version stdout: GNU Fortran (GCC) 10.2.0 Copyright (C) 2020 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Detected GFortran100plus compiler Makefile /Users/jacobfaibussowitsch/NoSync/petsc/master-arch-darwin-c-debug/lib/petsc/conf/pkg.conf.netcdf has correct checksum Do not need to rebuild NETCDF Checking for library in Download NETCDF: ['/Users/jacobfaibussowitsch/NoSync/petscpackages/lib/libnetcdf.a'] Contents: ['bin', 'SEACASProjRepoVersion.txt', 'include', 'lib', 'share'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [nccreate] in library ['/Users/jacobfaibussowitsch/NoSync/petscpackages/lib/libnetcdf.a'] ['/Users/jacobfaibussowitsch/NoSync/petscpackages/lib/libpnetcdf.a', '-lc++', '-ldl', '-Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib', '-L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib', '-lmpifort', '-lmpi', '-lpmpi', '-lgfortran', '-Wl,-rpath,/usr/local/lib', '-L/usr/local/lib', '-Wl,-rpath,/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0', '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0', '-Wl,-rpath,/usr/local/gfortran/lib', '-L/usr/local/gfortran/lib', '-lgfortran', '-lquadmath', '-lm', '/Users/jacobfaibussowitsch/NoSync/petscpackages/lib/libhdf5hl_fortran.a', 'libhdf5_fortran.a', 'libhdf5_hl.a', 'libhdf5.a', '/Users/jacobfaibussowitsch/NoSync/petscpackages/lib/libz.a'] ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char nccreate(); static void _check_nccreate() { nccreate(); } int main() { _check_nccreate();; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lnetcdf -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lpnetcdf -lc++ -ldl -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lmpifort -lmpi -lpmpi -lgfortran -Wl,-rpath,/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -Wl,-rpath,/usr/local/gfortran/lib -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lz -lc++ -ldl Defined "HAVE_LIBNETCDF" to "1" Checking for optional headers [] in Download NETCDF: ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Found header files [] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Checking for headers ['netcdf.h'] in Download NETCDF: ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['netcdf.h'] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Checking include with compiler flags var CXXPPFLAGS ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include', '/Users/jacobfaibussowitsch/NoSync/petscpackages/include', '/Users/jacobfaibussowitsch/NoSync/petscpackages/include', '/Users/jacobfaibussowitsch/NoSync/petscpackages/include', '/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.cc Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['netcdf.h'] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] ============================================================================================= TESTING: checkVersion from config.packages.netcdf(config/BuildSystem/config/package.py:1021) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "netcdf_meta.h" ;petscpkgver(NC_VERSION_MAJOR.NC_VERSION_MINOR.NC_VERSION_PATCH); Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.netcdf -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.netcdf/conftest.cc For netcdf need <= 4.5.0 <= ============================================================================================= TESTING: checkSharedLibrary from config.packages.netcdf(config/BuildSystem/config/package.py:953) By default we don't care about checking if the library is shared child config.packages.netcdf 0.710487 ============================================================================================= TESTING: consistencyChecks from config.packages.exodusii(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.exodusii(config/BuildSystem/config/package.py:870) ============================================================================================= TESTING: configureLibrary from config.packages.exodusii(config/BuildSystem/config/package.py:895) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional exodusii Looking for EXODUSII at git.exodusii, hg.exodusii or a directory starting with ['seacas'] Found a copy of EXODUSII in git.exodusii Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Executing: ['git', 'cat-file', '-e', 'e7308f4401dd8692318d22bc6abb1dc84d3fb404^{commit}'] Executing: ['git', 'rev-parse', 'e7308f4401dd8692318d22bc6abb1dc84d3fb404'] stdout: e7308f4401dd8692318d22bc6abb1dc84d3fb404 Executing: ['git', '-c', 'user.name=petsc-configure', '-c', 'user.email=petsc@configure', 'stash'] stdout: No local changes to save Executing: ['git', 'clean', '-f', '-d', '-x'] stdout: Removing exodusii.petscconf Removing pkg.gitcommit Executing: ['git', 'checkout', '-f', 'e7308f4401dd8692318d22bc6abb1dc84d3fb404'] Detected Darwin/MacOSX Catalina OS Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc --help | head -n 500 Detected CLANG compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -V Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 --version stdout: GNU Fortran (GCC) 10.2.0 Copyright (C) 2020 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Detected GFortran100plus compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -V Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 --version stdout: GNU Fortran (GCC) 10.2.0 Copyright (C) 2020 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Detected GFortran100plus compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -V Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 --version stdout: GNU Fortran (GCC) 10.2.0 Copyright (C) 2020 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Detected GFortran100plus compiler Makefile /Users/jacobfaibussowitsch/NoSync/petsc/master-arch-darwin-c-debug/lib/petsc/conf/pkg.conf.exodusii has correct checksum Commit file /Users/jacobfaibussowitsch/NoSync/petsc/master-arch-darwin-c-debug/lib/petsc/conf/pkg.gitcommit.exodusii has correct checksum Do not need to rebuild EXODUSII Checking for library in Download EXODUSII: ['/Users/jacobfaibussowitsch/NoSync/petscpackages/lib/libexodus.a'] Contents: ['bin', 'SEACASProjRepoVersion.txt', 'include', 'lib', 'share'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [ex_close] in library ['/Users/jacobfaibussowitsch/NoSync/petscpackages/lib/libexodus.a'] ['/Users/jacobfaibussowitsch/NoSync/petscpackages/lib/libnetcdf.a', '/Users/jacobfaibussowitsch/NoSync/petscpackages/lib/libpnetcdf.a', '-lc++', '-ldl', '-Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib', '-L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib', '-lmpifort', '-lmpi', '-lpmpi', '-lgfortran', '-Wl,-rpath,/usr/local/lib', '-L/usr/local/lib', '-Wl,-rpath,/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0', '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0', '-Wl,-rpath,/usr/local/gfortran/lib', '-L/usr/local/gfortran/lib', '-lgfortran', '-lquadmath', '-lm', '/Users/jacobfaibussowitsch/NoSync/petscpackages/lib/libhdf5hl_fortran.a', 'libhdf5_fortran.a', 'libhdf5_hl.a', 'libhdf5.a', '/Users/jacobfaibussowitsch/NoSync/petscpackages/lib/libz.a'] ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ex_close(); static void _check_ex_close() { ex_close(); } int main() { _check_ex_close();; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lexodus -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lnetcdf -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lpnetcdf -lc++ -ldl -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lmpifort -lmpi -lpmpi -lgfortran -Wl,-rpath,/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -Wl,-rpath,/usr/local/gfortran/lib -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lz -lc++ -ldl Defined "HAVE_LIBEXODUS" to "1" Checking for optional headers [] in Download EXODUSII: ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Found header files [] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Checking for headers ['exodusII.h'] in Download EXODUSII: ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['exodusII.h'] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Checking include with compiler flags var CPPFLAGS ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include', '/Users/jacobfaibussowitsch/NoSync/petscpackages/include', '/Users/jacobfaibussowitsch/NoSync/petscpackages/include', '/Users/jacobfaibussowitsch/NoSync/petscpackages/include', '/Users/jacobfaibussowitsch/NoSync/petscpackages/include', '/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.zstd -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.parmetis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.hdf5 -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pnetcdf -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['exodusII.h'] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] ============================================================================================= TESTING: checkVersion from config.packages.exodusii(config/BuildSystem/config/package.py:1021) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.exodusii(config/BuildSystem/config/package.py:953) By default we don't care about checking if the library is shared child config.packages.exodusii 1.023657 ============================================================================================= TESTING: consistencyChecks from config.packages.fblaslapack(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.fblaslapack(config/BuildSystem/config/packages/fblaslapack.py:27) The Apple Accelerate library uses threads that valgrind cannot handle child config.packages.fblaslapack 0.001439 ============================================================================================= TESTING: consistencyChecks from config.packages.X(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.X(config/BuildSystem/config/package.py:870) ============================================================================================= TESTING: configureLibrary from config.packages.X(config/BuildSystem/config/package.py:895) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional X Checking for library in Compiler specific search X: [] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [XSetWMName] in library [] [] ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char XSetWMName(); static void _check_XSetWMName() { XSetWMName(); } int main() { _check_XSetWMName();; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_XSetWMName", referenced from: __check_XSetWMName in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Checking for library in Compiler specific search X: ['libX11.a'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [XSetWMName] in library ['libX11.a'] [] ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char XSetWMName(); static void _check_XSetWMName() { XSetWMName(); } int main() { _check_XSetWMName();; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -lX11 -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lX11 clang: error: linker command failed with exit code 1 (use -v to see invocation) Checking for library in Package specific search directory X: ['/opt/X11/lib/libX11.a'] Contents: ['bin', 'libexec', 'include', 'etc', 'var', 'lib', 'share'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [XSetWMName] in library ['/opt/X11/lib/libX11.a'] [] ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char XSetWMName(); static void _check_XSetWMName() { XSetWMName(); } int main() { _check_XSetWMName();; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -Wl,-rpath,/opt/X11/lib -L/opt/X11/lib -lX11 -lc++ -ldl Defined "HAVE_LIBX11" to "1" Checking for optional headers [] in Package specific search directory X: ['/opt/X11/include', '/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/opt/X11/include', '/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Found header files [] in ['/opt/X11/include', '/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Checking for headers ['X11/Xlib.h'] in Package specific search directory X: ['/opt/X11/include', '/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['X11/Xlib.h'] in ['/opt/X11/include', '/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Checking include with compiler flags var CPPFLAGS ['/opt/X11/include', '/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.zstd -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.parmetis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.hdf5 -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pnetcdf -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/opt/X11/include -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['X11/Xlib.h'] in ['/opt/X11/include', '/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] ============================================================================================= TESTING: checkVersion from config.packages.X(config/BuildSystem/config/package.py:1021) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.X(config/BuildSystem/config/package.py:953) By default we don't care about checking if the library is shared child config.packages.X 0.995473 ============================================================================================= TESTING: consistencyChecks from config.packages.Triangle(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.Triangle(config/BuildSystem/config/package.py:870) ============================================================================================= TESTING: configureLibrary from config.packages.Triangle(config/BuildSystem/config/packages/Triangle.py:127) ================================================================================== Checking for a functional Triangle Looking for TRIANGLE at git.triangle, hg.triangle or a directory starting with ['petsc-pkg-triangle', 'Triangle'] Found a copy of TRIANGLE in git.triangle Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Executing: ['git', 'cat-file', '-e', 'v1.3-p2^{commit}'] Executing: ['git', 'rev-parse', 'v1.3-p2'] stdout: 83097fb451da7944460445a6f55008c3de0fae8b Executing: ['git', '-c', 'user.name=petsc-configure', '-c', 'user.email=petsc@configure', 'stash'] stdout: No local changes to save Executing: ['git', 'clean', '-f', '-d', '-x'] stdout: Removing make.inc Removing pkg.gitcommit Executing: ['git', 'checkout', '-f', '83097fb451da7944460445a6f55008c3de0fae8b'] Detected Darwin/MacOSX Catalina OS Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc --help | head -n 500 Detected CLANG compiler Executing: uname -s stdout: Darwin Makefile /Users/jacobfaibussowitsch/NoSync/petsc/master-arch-darwin-c-debug/lib/petsc/conf/pkg.conf.triangle has correct checksum Commit file /Users/jacobfaibussowitsch/NoSync/petsc/master-arch-darwin-c-debug/lib/petsc/conf/pkg.gitcommit.triangle has correct checksum Do not need to rebuild TRIANGLE Checking for library in Download TRIANGLE: ['/Users/jacobfaibussowitsch/NoSync/petscpackages/lib/libtriangle.a'] Contents: ['bin', 'SEACASProjRepoVersion.txt', 'include', 'lib', 'share'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [triangulate] in library ['/Users/jacobfaibussowitsch/NoSync/petscpackages/lib/libtriangle.a'] [] ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char triangulate(); static void _check_triangulate() { triangulate(); } int main() { _check_triangulate();; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -ltriangle -lc++ -ldl Defined "HAVE_LIBTRIANGLE" to "1" Checking for optional headers [] in Download TRIANGLE: ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Found header files [] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Checking for headers ['triangle.h'] in Download TRIANGLE: ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['triangle.h'] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Checking include with compiler flags var CPPFLAGS ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.zstd -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.parmetis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.hdf5 -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pnetcdf -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['triangle.h'] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] ============================================================================================= TESTING: checkVersion from config.packages.Triangle(config/BuildSystem/config/package.py:1021) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.Triangle(config/BuildSystem/config/package.py:953) By default we don't care about checking if the library is shared child config.packages.Triangle 0.540484 ============================================================================================= TESTING: consistencyChecks from config.packages.GLVis(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.GLVis(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.GLVis 0.001391 ============================================================================================= TESTING: consistencyChecks from config.packages.hwloc(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.hwloc(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.hwloc 0.001598 ============================================================================================= TESTING: consistencyChecks from config.packages.pthread(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.pthread(config/BuildSystem/config/package.py:870) ============================================================================================= TESTING: configureLibrary from config.packages.pthread(config/BuildSystem/config/packages/pthread.py:20) Checks for pthread_barrier_t, cpu_set_t, and sys/sysctl.h ================================================================================== Checking for a functional pthread Checking for library in Compiler specific search PTHREAD: [] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [pthread_create] in library [] [] ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char pthread_create(); static void _check_pthread_create() { pthread_create(); } int main() { _check_pthread_create();; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -lc++ -ldl Checking for optional headers [] in Compiler specific search PTHREAD: ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Found header files [] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Checking for headers ['pthread.h'] in Compiler specific search PTHREAD: ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['pthread.h'] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Checking include with compiler flags var CPPFLAGS ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.zstd -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.parmetis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.hdf5 -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pnetcdf -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['pthread.h'] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] ===== Checking compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread/conftest.c:6:1: error: use of undeclared identifier 'pthread_barrier_t' pthread_barrier_t *a; ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread/conftest.c:6:20: error: use of undeclared identifier 'a' pthread_barrier_t *a; ^ 2 errors generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { pthread_barrier_t *a; ; return 0; } ===== Checking compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread/conftest.c:6:1: error: use of undeclared identifier 'cpu_set_t' cpu_set_t *a; ^ /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread/conftest.c:6:12: error: use of undeclared identifier 'a' cpu_set_t *a; ^ 2 errors generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { cpu_set_t *a; ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.zstd -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.parmetis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.hdf5 -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pnetcdf -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_SYSCTL_H" to "1" ============================================================================================= TESTING: checkVersion from config.packages.pthread(config/BuildSystem/config/package.py:1021) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.pthread(config/BuildSystem/config/package.py:953) By default we don't care about checking if the library is shared child config.packages.pthread 0.848151 ============================================================================================= TESTING: consistencyChecks from config.packages.egads(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.egads(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.egads 0.001548 ============================================================================================= TESTING: consistencyChecks from config.packages.PTScotch(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.PTScotch(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.PTScotch 0.000991 ============================================================================================= TESTING: consistencyChecks from config.packages.Zoltan(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Zoltan(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.Zoltan 0.001019 ============================================================================================= TESTING: consistencyChecks from config.packages.ADIOS(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ADIOS(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.ADIOS 0.001021 ============================================================================================= TESTING: consistencyChecks from config.packages.openmp(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.openmp(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.openmp 0.000905 ============================================================================================= TESTING: consistencyChecks from config.packages.viennacl(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.viennacl(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.viennacl 0.000993 ============================================================================================= TESTING: consistencyChecks from config.packages.ColPack(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ColPack(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.ColPack 0.000956 ============================================================================================= TESTING: consistencyChecks from config.packages.ADOLC(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ADOLC(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.ADOLC 0.001145 ============================================================================================= TESTING: consistencyChecks from config.packages.openblas(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.openblas(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.openblas 0.000958 ============================================================================================= TESTING: consistencyChecks from config.packages.blis(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.blis(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.blis 0.000883 ============================================================================================= TESTING: consistencyChecks from config.packages.f2cblaslapack(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.f2cblaslapack(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.f2cblaslapack 0.000880 ============================================================================================= TESTING: consistencyChecks from config.packages.BlasLapack(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.BlasLapack(config/BuildSystem/config/package.py:870) ============================================================================================= TESTING: configureLibrary from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:448) ================================================================================ Checking for BLAS and LAPACK in Default compiler libraries ============================================================================================= TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:107) Checking for BLAS and LAPACK symbols Checking for Fortran name mangling underscore on BLAS/LAPACK Checking for functions [ddot_] in library [''] ['-lc++', '-ldl', '-Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib', '-L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib', '-lmpifort', '-lmpi', '-lpmpi', '-lgfortran', '-Wl,-rpath,/usr/local/lib', '-L/usr/local/lib', '-Wl,-rpath,/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0', '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0', '-Wl,-rpath,/usr/local/gfortran/lib', '-L/usr/local/gfortran/lib', '-lgfortran', '-lquadmath', '-lm'] ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -lc++ -ldl -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lmpifort -lmpi -lpmpi -lgfortran -Wl,-rpath,/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -Wl,-rpath,/usr/local/gfortran/lib -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_ddot_", referenced from: __check_ddot_ in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Checking for no name mangling on BLAS/LAPACK Checking for functions [ddot] in library [''] ['-lc++', '-ldl', '-Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib', '-L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib', '-lmpifort', '-lmpi', '-lpmpi', '-lgfortran', '-Wl,-rpath,/usr/local/lib', '-L/usr/local/lib', '-Wl,-rpath,/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0', '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0', '-Wl,-rpath,/usr/local/gfortran/lib', '-L/usr/local/gfortran/lib', '-lgfortran', '-lquadmath', '-lm'] ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot(); static void _check_ddot() { ddot(); } int main() { _check_ddot();; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -lc++ -ldl -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lmpifort -lmpi -lpmpi -lgfortran -Wl,-rpath,/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -Wl,-rpath,/usr/local/gfortran/lib -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_ddot", referenced from: __check_ddot in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Unknown name mangling in BLAS/LAPACK ================================================================================ Checking for BLAS and LAPACK in Default BLIS ============================================================================================= TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:107) Checking for BLAS and LAPACK symbols Checking for Fortran name mangling underscore on BLAS/LAPACK Checking for functions [ddot_] in library ['libblis.a'] ['-lc++', '-ldl', '-Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib', '-L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib', '-lmpifort', '-lmpi', '-lpmpi', '-lgfortran', '-Wl,-rpath,/usr/local/lib', '-L/usr/local/lib', '-Wl,-rpath,/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0', '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0', '-Wl,-rpath,/usr/local/gfortran/lib', '-L/usr/local/gfortran/lib', '-lgfortran', '-lquadmath', '-lm'] ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -lblis -lc++ -ldl -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lmpifort -lmpi -lpmpi -lgfortran -Wl,-rpath,/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -Wl,-rpath,/usr/local/gfortran/lib -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lblis clang: error: linker command failed with exit code 1 (use -v to see invocation) Checking for no name mangling on BLAS/LAPACK Checking for functions [ddot] in library ['libblis.a'] ['-lc++', '-ldl', '-Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib', '-L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib', '-lmpifort', '-lmpi', '-lpmpi', '-lgfortran', '-Wl,-rpath,/usr/local/lib', '-L/usr/local/lib', '-Wl,-rpath,/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0', '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0', '-Wl,-rpath,/usr/local/gfortran/lib', '-L/usr/local/gfortran/lib', '-lgfortran', '-lquadmath', '-lm'] ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot(); static void _check_ddot() { ddot(); } int main() { _check_ddot();; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -lblis -lc++ -ldl -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lmpifort -lmpi -lpmpi -lgfortran -Wl,-rpath,/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -Wl,-rpath,/usr/local/gfortran/lib -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: ld: library not found for -lblis clang: error: linker command failed with exit code 1 (use -v to see invocation) Unknown name mangling in BLAS/LAPACK ================================================================================ Checking for BLAS and LAPACK in Default compiler locations ============================================================================================= TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:107) Checking for BLAS and LAPACK symbols Checking for Fortran name mangling underscore on BLAS/LAPACK Checking for functions [ddot_] in library ['libblas.a'] ['-lc++', '-ldl', '-Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib', '-L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib', '-lmpifort', '-lmpi', '-lpmpi', '-lgfortran', '-Wl,-rpath,/usr/local/lib', '-L/usr/local/lib', '-Wl,-rpath,/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0', '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0', '-Wl,-rpath,/usr/local/gfortran/lib', '-L/usr/local/gfortran/lib', '-lgfortran', '-lquadmath', '-lm'] ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -lblas -lc++ -ldl -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lmpifort -lmpi -lpmpi -lgfortran -Wl,-rpath,/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -Wl,-rpath,/usr/local/gfortran/lib -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -lc++ -ldl Defined "HAVE_LIBBLAS" to "1" Checking for functions [dgetrs_] in library ['liblapack.a'] ['libblas.a', '-lc++', '-ldl', '-Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib', '-L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib', '-lmpifort', '-lmpi', '-lpmpi', '-lgfortran', '-Wl,-rpath,/usr/local/lib', '-L/usr/local/lib', '-Wl,-rpath,/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0', '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0', '-Wl,-rpath,/usr/local/gfortran/lib', '-L/usr/local/gfortran/lib', '-lgfortran', '-lquadmath', '-lm'] ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgetrs_(); static void _check_dgetrs_() { dgetrs_(); } int main() { _check_dgetrs_();; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -llapack -lblas -lc++ -ldl -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lmpifort -lmpi -lpmpi -lgfortran -Wl,-rpath,/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -Wl,-rpath,/usr/local/gfortran/lib -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -lc++ -ldl Defined "HAVE_LIBLAPACK" to "1" Checking for functions [dgeev_] in library ['liblapack.a'] ['libblas.a', '-lc++', '-ldl', '-Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib', '-L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib', '-lmpifort', '-lmpi', '-lpmpi', '-lgfortran', '-Wl,-rpath,/usr/local/lib', '-L/usr/local/lib', '-Wl,-rpath,/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0', '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0', '-Wl,-rpath,/usr/local/gfortran/lib', '-L/usr/local/gfortran/lib', '-lgfortran', '-lquadmath', '-lm'] ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgeev_(); static void _check_dgeev_() { dgeev_(); } int main() { _check_dgeev_();; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -llapack -lblas -lc++ -ldl -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lmpifort -lmpi -lpmpi -lgfortran -Wl,-rpath,/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -Wl,-rpath,/usr/local/gfortran/lib -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -lc++ -ldl Defined "HAVE_LIBLAPACK" to "1" Found Fortran mangling on BLAS/LAPACK which is underscore Defined "BLASLAPACK_UNDERSCORE" to "1" ============================================================================================= TESTING: checkMKL from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:545) Check for Intel MKL library Checking for functions [mkl_set_num_threads] in library ['liblapack.a', 'libblas.a', '-lc++', '-ldl', '-Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib', '-L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib', '-lmpifort', '-lmpi', '-lpmpi', '-lgfortran', '-Wl,-rpath,/usr/local/lib', '-L/usr/local/lib', '-Wl,-rpath,/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0', '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0', '-Wl,-rpath,/usr/local/gfortran/lib', '-L/usr/local/gfortran/lib', '-lgfortran', '-lquadmath', '-lm'] [] ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char mkl_set_num_threads(); static void _check_mkl_set_num_threads() { mkl_set_num_threads(); } int main() { _check_mkl_set_num_threads();; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -llapack -lblas -lc++ -ldl -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lmpifort -lmpi -lpmpi -lgfortran -Wl,-rpath,/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -Wl,-rpath,/usr/local/gfortran/lib -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_mkl_set_num_threads", referenced from: __check_mkl_set_num_threads in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) ============================================================================================= TESTING: checkESSL from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:583) Check for the IBM ESSL library Checking for functions [iessl] in library ['liblapack.a', 'libblas.a', '-lc++', '-ldl', '-Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib', '-L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib', '-lmpifort', '-lmpi', '-lpmpi', '-lgfortran', '-Wl,-rpath,/usr/local/lib', '-L/usr/local/lib', '-Wl,-rpath,/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0', '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0', '-Wl,-rpath,/usr/local/gfortran/lib', '-L/usr/local/gfortran/lib', '-lgfortran', '-lquadmath', '-lm'] [] ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char iessl(); static void _check_iessl() { iessl(); } int main() { _check_iessl();; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -llapack -lblas -lc++ -ldl -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lmpifort -lmpi -lpmpi -lgfortran -Wl,-rpath,/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -Wl,-rpath,/usr/local/gfortran/lib -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_iessl", referenced from: __check_iessl in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) ============================================================================================= TESTING: checkPESSL from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:591) Check for the IBM PESSL library - and error out - if used instead of ESSL Checking for functions [ipessl] in library ['liblapack.a', 'libblas.a', '-lc++', '-ldl', '-Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib', '-L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib', '-lmpifort', '-lmpi', '-lpmpi', '-lgfortran', '-Wl,-rpath,/usr/local/lib', '-L/usr/local/lib', '-Wl,-rpath,/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0', '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0', '-Wl,-rpath,/usr/local/gfortran/lib', '-L/usr/local/gfortran/lib', '-lgfortran', '-lquadmath', '-lm'] [] ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ipessl(); static void _check_ipessl() { ipessl(); } int main() { _check_ipessl();; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -llapack -lblas -lc++ -ldl -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lmpifort -lmpi -lpmpi -lgfortran -Wl,-rpath,/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -Wl,-rpath,/usr/local/gfortran/lib -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_ipessl", referenced from: __check_ipessl in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) ============================================================================================= TESTING: checkMissing from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:616) Check for missing LAPACK routines Checking for functions [dgelss_ dgerfs_ dgges_ dhgeqz_ dhseqr_ dorgqr_ dormqr_ dstebz_ dstegr_ dstein_ dsteqr_ dsytri_ dtgsen_ dtrsen_ dtrtrs_] in library ['liblapack.a'] ['libblas.a', 'liblapack.a', 'libblas.a', '-lc++', '-ldl', '-Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib', '-L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib', '-lmpifort', '-lmpi', '-lpmpi', '-lgfortran', '-Wl,-rpath,/usr/local/lib', '-L/usr/local/lib', '-Wl,-rpath,/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0', '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0', '-Wl,-rpath,/usr/local/gfortran/lib', '-L/usr/local/gfortran/lib', '-lgfortran', '-lquadmath', '-lm'] ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgelss_(); static void _check_dgelss_() { dgelss_(); } char dgerfs_(); static void _check_dgerfs_() { dgerfs_(); } char dgges_(); static void _check_dgges_() { dgges_(); } char dhgeqz_(); static void _check_dhgeqz_() { dhgeqz_(); } char dhseqr_(); static void _check_dhseqr_() { dhseqr_(); } char dorgqr_(); static void _check_dorgqr_() { dorgqr_(); } char dormqr_(); static void _check_dormqr_() { dormqr_(); } char dstebz_(); static void _check_dstebz_() { dstebz_(); } char dstegr_(); static void _check_dstegr_() { dstegr_(); } char dstein_(); static void _check_dstein_() { dstein_(); } char dsteqr_(); static void _check_dsteqr_() { dsteqr_(); } char dsytri_(); static void _check_dsytri_() { dsytri_(); } char dtgsen_(); static void _check_dtgsen_() { dtgsen_(); } char dtrsen_(); static void _check_dtrsen_() { dtrsen_(); } char dtrtrs_(); static void _check_dtrtrs_() { dtrtrs_(); } int main() { _check_dgelss_(); _check_dgerfs_(); _check_dgges_(); _check_dhgeqz_(); _check_dhseqr_(); _check_dorgqr_(); _check_dormqr_(); _check_dstebz_(); _check_dstegr_(); _check_dstein_(); _check_dsteqr_(); _check_dsytri_(); _check_dtgsen_(); _check_dtrsen_(); _check_dtrtrs_();; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -llapack -lblas -llapack -lblas -lc++ -ldl -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lmpifort -lmpi -lpmpi -lgfortran -Wl,-rpath,/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -Wl,-rpath,/usr/local/gfortran/lib -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -lc++ -ldl Defined "HAVE_LIBLAPACK" to "1" ============================================================================================= TESTING: checklsame from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:632) Do the BLAS/LAPACK libraries have a valid lsame() function with correct binding. Checking for functions [lsame_] in library ['liblapack.a', 'libblas.a', '-lc++', '-ldl', '-Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib', '-L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib', '-lmpifort', '-lmpi', '-lpmpi', '-lgfortran', '-Wl,-rpath,/usr/local/lib', '-L/usr/local/lib', '-Wl,-rpath,/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0', '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0', '-Wl,-rpath,/usr/local/gfortran/lib', '-L/usr/local/gfortran/lib', '-lgfortran', '-lquadmath', '-lm'] [] ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char lsame_(); static void _check_lsame_() { lsame_(); } int main() { _check_lsame_();; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -llapack -lblas -lc++ -ldl -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lmpifort -lmpi -lpmpi -lgfortran -Wl,-rpath,/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -Wl,-rpath,/usr/local/gfortran/lib -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -lc++ -ldl Defined "HAVE_LIBLAPACK" to "1" Defined "HAVE_LIBBLAS" to "1" Defined "HAVE_LIBC__" to "1" Defined "HAVE_LIBDL" to "1" Defined "HAVE_LIBMPIFORT" to "1" Defined "HAVE_LIBMPI" to "1" Defined "HAVE_LIBPMPI" to "1" Defined "HAVE_LIBGFORTRAN" to "1" Defined "HAVE_LIBGFORTRAN" to "1" Defined "HAVE_LIBQUADMATH" to "1" Defined "HAVE_LIBM" to "1" ===== Checking compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" char *dgeev_(void); char* testroutine(void){return dgeev_(); }===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" char *dgeev_(void); char* testroutine(void){return dgeev_(); }Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -Wl,-rpath,/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -Wl,-rpath,/usr/local/gfortran/lib -L/usr/local/gfortran/lib -llapack -lblas -llapack -lblas -lc++ -ldl -lmpifort -lmpi -lpmpi -lgfortran -lquadmath -lm -lc++ -ldl ============================================================================================= TESTING: checkRuntimeIssues from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:691) Determines if BLAS/LAPACK routines use 32 or 64 bit integers ======== Checking running linked program ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.BlasLapack/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.BlasLapack -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.BlasLapack/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { FILE *output = fopen("runtimetestoutput","w"); extern double ddot_(const int*,const double*,const int *,const double*,const int*); double x1mkl[4] = {3.0,5.0,7.0,9.0}; int one1mkl = 1,nmkl = 2; double dotresultmkl = 0; dotresultmkl = ddot_(&nmkl,x1mkl,&one1mkl,x1mkl,&one1mkl); fprintf(output, "-known-64-bit-blas-indices=%d",dotresultmkl != 34);; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.BlasLapack/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.BlasLapack/conftest.o -llapack -lblas -lc++ -ldl -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lmpifort -lmpi -lpmpi -lgfortran -Wl,-rpath,/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -Wl,-rpath,/usr/local/gfortran/lib -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -lc++ -ldl Testing executable /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.BlasLapack/conftest to see if it can be run Executing: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.BlasLapack/conftest Running Executable with threads to time it out at 60 Executing: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.BlasLapack/conftest Checking for 64 bit blas indices: result 0 ============================================================================================= TESTING: checkCHeaders from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:523) Check for cblas.h and lapacke.h ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['cblas.h', 'lapacke.h'] in [] Checking include with compiler flags var CPPFLAGS [] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.zstd -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.parmetis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.hdf5 -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pnetcdf -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 366 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/confdefs.h" 1 # 2 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 # 1 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conffix.h" 1 # 3 "/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c" 2 stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'cblas.h' file not found #include ^~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'cblas.h' file not found #include ^~~~~~~~~ 1 error generated. : Preprocess stderr after filtering: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c:3:10: fatal error: 'cblas.h' file not found#include ^~~~~~~~~1 error generated.: ============================================================================================= TESTING: checkVersion from config.packages.BlasLapack(config/BuildSystem/config/package.py:1021) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.BlasLapack(config/BuildSystem/config/package.py:953) By default we don't care about checking if the library is shared child config.packages.BlasLapack 5.008968 ============================================================================================= TESTING: consistencyChecks from config.packages.sundials2(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.sundials2(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.sundials2 0.000957 ============================================================================================= TESTING: consistencyChecks from config.packages.spai(config/BuildSystem/config/packages/spai.py:53) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.spai(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.spai 0.002073 ============================================================================================= TESTING: consistencyChecks from config.packages.pARMS(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.pARMS(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.pARMS 0.001077 ============================================================================================= TESTING: consistencyChecks from config.packages.p4est(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.p4est(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.p4est 0.000999 ============================================================================================= TESTING: consistencyChecks from config.packages.mkl_sparse_optimize(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.mkl_sparse_optimize(config/BuildSystem/config/package.py:870) ============================================================================================= TESTING: configureLibrary from config.packages.mkl_sparse_optimize(config/BuildSystem/config/packages/mkl_sparse_optimize.py:48) ============================================================================================= TESTING: checkVersion from config.packages.mkl_sparse_optimize(config/BuildSystem/config/package.py:1021) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.mkl_sparse_optimize(config/BuildSystem/config/package.py:953) By default we don't care about checking if the library is shared child config.packages.mkl_sparse_optimize 0.001371 ============================================================================================= TESTING: consistencyChecks from config.packages.mkl_sparse(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.mkl_sparse(config/BuildSystem/config/package.py:870) ============================================================================================= TESTING: configureLibrary from config.packages.mkl_sparse(config/BuildSystem/config/packages/mkl_sparse.py:21) ============================================================================================= TESTING: checkVersion from config.packages.mkl_sparse(config/BuildSystem/config/package.py:1021) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.mkl_sparse(config/BuildSystem/config/package.py:953) By default we don't care about checking if the library is shared child config.packages.mkl_sparse 0.001303 ============================================================================================= TESTING: consistencyChecks from config.packages.mkl_cpardiso(config/BuildSystem/config/packages/mkl_cpardiso.py:20) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mkl_cpardiso(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.mkl_cpardiso 0.001588 ============================================================================================= TESTING: consistencyChecks from config.packages.kokkos(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.kokkos(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.kokkos 0.000980 ============================================================================================= TESTING: consistencyChecks from config.packages.kokkos-kernels(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.kokkos-kernels(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.kokkos-kernels 0.001030 ============================================================================================= TESTING: consistencyChecks from config.packages.hpddm(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.hpddm(config/BuildSystem/config/packages/hpddm.py:123) Defined make rule "hpddm-build" with dependencies "" and code [] Defined make rule "hpddm-install" with dependencies "" and code [] child config.packages.hpddm 0.001851 ============================================================================================= TESTING: consistencyChecks from config.packages.magma(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.magma(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.magma 0.000930 ============================================================================================= TESTING: consistencyChecks from config.packages.kblas(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.kblas(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.kblas 0.000843 ============================================================================================= TESTING: consistencyChecks from config.packages.hara(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.hara(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.hara 0.001066 ============================================================================================= TESTING: consistencyChecks from config.packages.fftw(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.fftw(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.fftw 0.000922 ============================================================================================= TESTING: consistencyChecks from config.packages.elemental(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.elemental(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.elemental 0.000893 ============================================================================================= TESTING: consistencyChecks from config.packages.bamg(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.bamg(config/BuildSystem/config/packages/bamg.py:85) Defined make rule "bamg-build" with dependencies "" and code [] Defined make rule "bamg-install" with dependencies "" and code [] child config.packages.bamg 0.001993 ============================================================================================= TESTING: consistencyChecks from config.packages.ml(config/BuildSystem/config/packages/ml.py:61) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.ml(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.ml 0.001520 ============================================================================================= TESTING: consistencyChecks from config.packages.mkl_pardiso(config/BuildSystem/config/packages/mkl_pardiso.py:21) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mkl_pardiso(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.mkl_pardiso 0.001366 ============================================================================================= TESTING: consistencyChecks from config.packages.SuperLU_DIST(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.SuperLU_DIST(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.SuperLU_DIST 0.001056 ============================================================================================= TESTING: consistencyChecks from config.packages.SuperLU(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.SuperLU(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.SuperLU 0.001044 Executing: uname -s stdout: Darwin ============================================================================================= TESTING: consistencyChecks from config.packages.SuiteSparse(config/BuildSystem/config/packages/SuiteSparse.py:172) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.SuiteSparse(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.SuiteSparse 0.011078 ============================================================================================= TESTING: consistencyChecks from config.packages.PaStiX(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.PaStiX(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.PaStiX 0.001055 ============================================================================================= TESTING: consistencyChecks from config.packages.scalapack(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.scalapack(config/BuildSystem/config/package.py:870) ============================================================================================= TESTING: configureLibrary from config.packages.scalapack(config/BuildSystem/config/package.py:895) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional scalapack Looking for SCALAPACK at git.scalapack, hg.scalapack or a directory starting with ['petsc-pkg-scalapack', 'scalapack'] Found a copy of SCALAPACK in git.scalapack Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Executing: ['git', 'cat-file', '-e', 'v2.1.0-p2^{commit}'] Executing: ['git', 'rev-parse', 'v2.1.0-p2'] stdout: 8c9fe5c69103a73454e5e6425b0109d31cc6428e Executing: ['git', '-c', 'user.name=petsc-configure', '-c', 'user.email=petsc@configure', 'stash'] stdout: No local changes to save Executing: ['git', 'clean', '-f', '-d', '-x'] stdout: Removing SLmake.inc Removing pkg.gitcommit Executing: ['git', 'checkout', '-f', '8c9fe5c69103a73454e5e6425b0109d31cc6428e'] Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -V Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 --version stdout: GNU Fortran (GCC) 10.2.0 Copyright (C) 2020 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Detected GFortran100plus compiler Detected Darwin/MacOSX Catalina OS Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc --help | head -n 500 Detected CLANG compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.BlasLapack -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.BlasLapack -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -mfp16-format=ieee /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 1 stderr: clang: error: unknown argument: '-mfp16-format=ieee' Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -mfp16-format=ieee due to nonzero status from link Rejecting compiler flag -mfp16-format=ieee due to clang: error: unknown argument: '-mfp16-format=ieee' PETSc Error: No output file produced Makefile /Users/jacobfaibussowitsch/NoSync/petsc/master-arch-darwin-c-debug/lib/petsc/conf/pkg.conf.scalapack has correct checksum Commit file /Users/jacobfaibussowitsch/NoSync/petsc/master-arch-darwin-c-debug/lib/petsc/conf/pkg.gitcommit.scalapack has correct checksum Do not need to rebuild SCALAPACK Checking for library in Download SCALAPACK: ['/Users/jacobfaibussowitsch/NoSync/petscpackages/lib/libscalapack.a'] Contents: ['bin', 'SEACASProjRepoVersion.txt', 'include', 'lib', 'share'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [pssytrd_] in library ['/Users/jacobfaibussowitsch/NoSync/petscpackages/lib/libscalapack.a'] ['liblapack.a', 'libblas.a', '-lc++', '-ldl', '-Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib', '-L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib', '-lmpifort', '-lmpi', '-lpmpi', '-lgfortran', '-Wl,-rpath,/usr/local/lib', '-L/usr/local/lib', '-Wl,-rpath,/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0', '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0', '-Wl,-rpath,/usr/local/gfortran/lib', '-L/usr/local/gfortran/lib', '-lgfortran', '-lquadmath', '-lm'] ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.BlasLapack -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char pssytrd_(); static void _check_pssytrd_() { pssytrd_(); } int main() { _check_pssytrd_();; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lscalapack -llapack -lblas -lc++ -ldl -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lmpifort -lmpi -lpmpi -lgfortran -Wl,-rpath,/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -Wl,-rpath,/usr/local/gfortran/lib -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -lc++ -ldl Defined "HAVE_LIBSCALAPACK" to "1" Checking for optional headers [] in Download SCALAPACK: ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Found header files [] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Checking for headers [] in Download SCALAPACK: ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] ============================================================================================= TESTING: checkVersion from config.packages.scalapack(config/BuildSystem/config/package.py:1021) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ============================================================================================= TESTING: checkSharedLibrary from config.packages.scalapack(config/BuildSystem/config/package.py:953) By default we don't care about checking if the library is shared child config.packages.scalapack 0.898083 ============================================================================================= TESTING: consistencyChecks from config.packages.strumpack(config/BuildSystem/config/packages/strumpack.py:86) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.strumpack(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.strumpack 0.002329 Executing: uname -s stdout: Darwin Detected Darwin/MacOSX OS ============================================================================================= TESTING: consistencyChecks from config.packages.MUMPS(config/BuildSystem/config/packages/MUMPS.py:51) ============================================================================================= TESTING: checkDependencies from config.packages.MUMPS(config/BuildSystem/config/package.py:870) ============================================================================================= TESTING: configureLibrary from config.packages.MUMPS(config/BuildSystem/config/package.py:895) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional MUMPS Looking for MUMPS at git.mumps, hg.mumps or a directory starting with ['petsc-pkg-mumps', 'MUMPS'] Found a copy of MUMPS in petsc-pkg-mumps-d1a5c931b762 Detected Darwin/MacOSX Catalina OS Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc --help | head -n 500 Detected CLANG compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -V Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 --version stdout: GNU Fortran (GCC) 10.2.0 Copyright (C) 2020 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Detected GFortran100plus compiler Checking for functions [dgemmt_] in library ['liblapack.a', 'libblas.a', '-lc++', '-ldl', '-Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib', '-L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib', '-lmpifort', '-lmpi', '-lpmpi', '-lgfortran', '-Wl,-rpath,/usr/local/lib', '-L/usr/local/lib', '-Wl,-rpath,/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0', '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0', '-Wl,-rpath,/usr/local/gfortran/lib', '-L/usr/local/gfortran/lib', '-lgfortran', '-lquadmath', '-lm'] [] ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.BlasLapack -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgemmt_(); static void _check_dgemmt_() { dgemmt_(); } int main() { _check_dgemmt_();; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -llapack -lblas -lc++ -ldl -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lmpifort -lmpi -lpmpi -lgfortran -Wl,-rpath,/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -Wl,-rpath,/usr/local/gfortran/lib -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -lc++ -ldl Possible ERROR while running linker: exit code 1 stderr: Undefined symbols for architecture x86_64: "_dgemmt_", referenced from: __check_dgemmt_ in conftest.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) Makefile /Users/jacobfaibussowitsch/NoSync/petsc/master-arch-darwin-c-debug/lib/petsc/conf/pkg.conf.mumps has correct checksum Do not need to rebuild MUMPS Checking for library in Download MUMPS: ['/Users/jacobfaibussowitsch/NoSync/petscpackages/lib/libcmumps.a', 'libdmumps.a', 'libsmumps.a', 'libzmumps.a', 'libmumps_common.a', 'libpord.a'] Contents: ['bin', 'SEACASProjRepoVersion.txt', 'include', 'lib', 'share'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [dmumps_c] in library ['/Users/jacobfaibussowitsch/NoSync/petscpackages/lib/libcmumps.a', 'libdmumps.a', 'libsmumps.a', 'libzmumps.a', 'libmumps_common.a', 'libpord.a'] ['/Users/jacobfaibussowitsch/NoSync/petscpackages/lib/libparmetis.a', '/Users/jacobfaibussowitsch/NoSync/petscpackages/lib/libmetis.a', '/Users/jacobfaibussowitsch/NoSync/petscpackages/lib/libscalapack.a', 'liblapack.a', 'libblas.a', '-lc++', '-ldl', '-Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib', '-L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib', '-lmpifort', '-lmpi', '-lpmpi', '-lgfortran', '-Wl,-rpath,/usr/local/lib', '-L/usr/local/lib', '-Wl,-rpath,/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0', '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0', '-Wl,-rpath,/usr/local/gfortran/lib', '-L/usr/local/gfortran/lib', '-lgfortran', '-lquadmath', '-lm'] ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.BlasLapack -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dmumps_c(); static void _check_dmumps_c() { dmumps_c(); } int main() { _check_dmumps_c();; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lcmumps -ldmumps -lsmumps -lzmumps -lmumps_common -lpord -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lparmetis -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lmetis -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lscalapack -llapack -lblas -lc++ -ldl -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lmpifort -lmpi -lpmpi -lgfortran -Wl,-rpath,/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -Wl,-rpath,/usr/local/gfortran/lib -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -lc++ -ldl Defined "HAVE_LIBCMUMPS" to "1" Defined "HAVE_LIBDMUMPS" to "1" Defined "HAVE_LIBSMUMPS" to "1" Defined "HAVE_LIBZMUMPS" to "1" Defined "HAVE_LIBMUMPS_COMMON" to "1" Defined "HAVE_LIBPORD" to "1" Checking for optional headers [] in Download MUMPS: ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Found header files [] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Checking for headers ['dmumps_c.h'] in Download MUMPS: ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['dmumps_c.h'] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Checking include with compiler flags var CPPFLAGS ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include', '/Users/jacobfaibussowitsch/NoSync/petscpackages/include', '/Users/jacobfaibussowitsch/NoSync/petscpackages/include', '/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.zstd -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.parmetis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.hdf5 -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pnetcdf -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['dmumps_c.h'] in ['/Users/jacobfaibussowitsch/NoSync/petscpackages/include'] ============================================================================================= TESTING: checkVersion from config.packages.MUMPS(config/BuildSystem/config/package.py:1021) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "dmumps_c.h" ;petscpkgver(MUMPS_VERSION); Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -E -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.zstd -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.parmetis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.hdf5 -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pnetcdf -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MUMPS -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MUMPS/conftest.c For mumps need 5.2.1 <= 5.2.1 <= ============================================================================================= TESTING: checkSharedLibrary from config.packages.MUMPS(config/BuildSystem/config/package.py:953) By default we don't care about checking if the library is shared child config.packages.MUMPS 1.221449 ============================================================================================= TESTING: consistencyChecks from config.packages.MOAB(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.MOAB(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.MOAB 0.001460 ============================================================================================= TESTING: consistencyChecks from config.packages.Chombo(config/BuildSystem/config/packages/Chombo.py:131) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Chombo(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.Chombo 0.002847 ============================================================================================= TESTING: consistencyChecks from config.packages.hypre(config/BuildSystem/config/packages/hypre.py:105) ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.hypre(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.hypre 0.002763 ============================================================================================= TESTING: consistencyChecks from config.packages.Trilinos(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.Trilinos(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.Trilinos 0.001091 ============================================================================================= TESTING: consistencyChecks from config.packages.xSDKTrilinos(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.xSDKTrilinos(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.xSDKTrilinos 0.001220 ============================================================================================= TESTING: consistencyChecks from config.packages.mstk(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.mstk(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.mstk 0.001047 ============================================================================================= TESTING: consistencyChecks from config.packages.MFEM(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.MFEM(config/BuildSystem/config/packages/MFEM.py:192) Defined make rule "mfem-build" with dependencies "" and code [] Defined make rule "mfem-install" with dependencies "" and code [] child config.packages.MFEM 0.001949 ============================================================================================= TESTING: consistencyChecks from config.packages.AMReX(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.AMReX(config/BuildSystem/config/packages/AMReX.py:157) Defined make rule "amrex-build" with dependencies "" and code [] Defined make rule "amrex-install" with dependencies "" and code [] child config.packages.AMReX 0.001624 ============================================================================================= TESTING: configureRTLDDefault from PETSc.Configure(config/PETSc/Configure.py:706) ===== Checking compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.BlasLapack -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void *ptr = RTLD_DEFAULT; int main() { ; return 0; } Defined "RTLD_DEFAULT" to "1" ============================================================================================= TESTING: configurePrefetch from PETSc.Configure(config/PETSc/Configure.py:524) Sees if there are any prefetch functions supported Executing: uname -s stdout: Darwin ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.BlasLapack -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { void *v = 0;_mm_prefetch((const char*)v,_MM_HINT_NTA); ; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest.o -lc++ -ldl Defined "HAVE_XMMINTRIN_H" to "1" Defined "Prefetch(a,b,c)" to "_mm_prefetch((const char*)(a),(c))" Defined "PREFETCH_HINT_NTA" to "_MM_HINT_NTA" Defined "PREFETCH_HINT_T0" to "_MM_HINT_T0" Defined "PREFETCH_HINT_T1" to "_MM_HINT_T1" Defined "PREFETCH_HINT_T2" to "_MM_HINT_T2" ============================================================================================= TESTING: configureUnused from PETSc.Configure(config/PETSc/Configure.py:592) Sees if __attribute((unused)) is supported ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.BlasLapack -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest.c:7:5: warning: unused variable 'j' [-Wunused-variable] int j = myfunc(&i); ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" __attribute((unused)) static int myfunc(__attribute((unused)) void *name){ return 1;} int main() { int i = 0; int j = myfunc(&i); typedef void* atype; __attribute((unused)) atype a; ; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest.o -lc++ -ldl Defined "UNUSED" to "__attribute((unused))" ============================================================================================= TESTING: configureDeprecated from PETSc.Configure(config/PETSc/Configure.py:610) Check if __attribute((deprecated)) is supported ===== Checking compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.BlasLapack -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest.c:3:38: warning: unused function 'myfunc' [-Wunused-function] __attribute((deprecated)) static int myfunc(void) { return 1;} ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" __attribute((deprecated)) static int myfunc(void) { return 1;} int main() { ; return 0; } Defined "DEPRECATED_FUNCTION(why)" to "__attribute((deprecated))" Defined "DEPRECATED_TYPEDEF(why)" to "__attribute((deprecated))" ===== Checking compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.BlasLapack -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" enum E {oldval __attribute((deprecated)), newval }; int main() { ; return 0; } Defined "DEPRECATED_ENUM(why)" to "__attribute((deprecated))" ===== Checking compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.BlasLapack -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define TEST _Pragma("GCC warning "Testing _Pragma"") value int main() { ; return 0; } Defined "DEPRECATED_MACRO(why)" to "_Pragma(why)" ============================================================================================= TESTING: configureIsatty from PETSc.Configure(config/PETSc/Configure.py:604) Check if the Unix C function isatty() works correctly Actually just assumes it does not work correctly on batch systems Defined "USE_ISATTY" to "1" ============================================================================================= TESTING: configureExpect from PETSc.Configure(config/PETSc/Configure.py:659) Sees if the __builtin_expect directive is supported ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.BlasLapack -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { if (__builtin_expect(0,1)) return 1;; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest.o -lc++ -ldl Defined "HAVE_BUILTIN_EXPECT" to "1" ============================================================================================= TESTING: configureAlign from PETSc.Configure(config/PETSc/Configure.py:643) Check if __attribute(aligned) is supported ===== Checking compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.BlasLapack -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" struct mystruct {int myint;} __attribute((aligned(16))); char assert_aligned[(sizeof(struct mystruct)==16)*2-1]; int main() { ; return 0; } Defined "ATTRIBUTEALIGNED(size)" to "__attribute((aligned(size)))" Defined "HAVE_ATTRIBUTEALIGNED" to "1" ============================================================================================= TESTING: configureFunctionName from PETSc.Configure(config/PETSc/Configure.py:666) Sees if the compiler supports __func__ or a variant. ===== Checking compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.BlasLapack -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { if (__func__[0] != 'm') return 1;; return 0; } ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.BlasLapack -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { if (__func__[0] != 'm') return 1;; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest.o -lc++ -ldl Defined "FUNCTION_NAME_C" to "__func__" ===== Checking compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { if (__func__[0] != 'm') return 1;; return 0; } ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { if (__func__[0] != 'm') return 1;; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest.o -lc++ -ldl Defined "FUNCTION_NAME_CXX" to "__func__" ============================================================================================= TESTING: configureIntptrt from PETSc.Configure(config/PETSc/Configure.py:684) Determine what to use for uintptr_t ===== Checking compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.BlasLapack -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest.c:6:18: warning: unused variable 'i' [-Wunused-variable] int x; uintptr_t i = (uintptr_t)&x;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int x; uintptr_t i = (uintptr_t)&x;; return 0; } Defined "UINTPTR_T" to "uintptr_t" ============================================================================================= TESTING: configureSolaris from PETSc.Configure(config/PETSc/Configure.py:711) Solaris specific stuff ============================================================================================= TESTING: configureLinux from PETSc.Configure(config/PETSc/Configure.py:724) Linux specific stuff Defined "HAVE_DOUBLE_ALIGN_MALLOC" to "1" ============================================================================================= TESTING: configureWin32 from PETSc.Configure(config/PETSc/Configure.py:730) Win32 non-cygwin specific stuff Checking for functions [GetComputerName] in library ['Kernel32.lib'] [] ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.BlasLapack -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c:4:10: fatal error: 'windows.h' file not found #include ^~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetComputerName() { GetComputerName(NULL,NULL);; } int main() { _check_GetComputerName();; return 0; } Compile failed inside link Checking for functions [GetComputerName] in library ['kernel32'] [] ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.BlasLapack -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c:4:10: fatal error: 'windows.h' file not found #include ^~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetComputerName() { GetComputerName(NULL,NULL);; } int main() { _check_GetComputerName();; return 0; } Compile failed inside link Checking for functions [GetUserName] in library ['Advapi32.lib'] [] ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.BlasLapack -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c:4:10: fatal error: 'windows.h' file not found #include ^~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetUserName() { GetUserName(NULL,NULL);; } int main() { _check_GetUserName();; return 0; } Compile failed inside link Checking for functions [GetUserName] in library ['advapi32'] [] ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.BlasLapack -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c:4:10: fatal error: 'windows.h' file not found #include ^~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetUserName() { GetUserName(NULL,NULL);; } int main() { _check_GetUserName();; return 0; } Compile failed inside link Checking for functions [GetDC] in library ['User32.lib'] [] ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.BlasLapack -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c:4:10: fatal error: 'windows.h' file not found #include ^~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetDC() { GetDC(0);; } int main() { _check_GetDC();; return 0; } Compile failed inside link Checking for functions [GetDC] in library ['user32'] [] ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.BlasLapack -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c:4:10: fatal error: 'windows.h' file not found #include ^~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetDC() { GetDC(0);; } int main() { _check_GetDC();; return 0; } Compile failed inside link Checking for functions [CreateCompatibleDC] in library ['Gdi32.lib'] [] ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.BlasLapack -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c:4:10: fatal error: 'windows.h' file not found #include ^~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_CreateCompatibleDC() { CreateCompatibleDC(0);; } int main() { _check_CreateCompatibleDC();; return 0; } Compile failed inside link Checking for functions [CreateCompatibleDC] in library ['gdi32'] [] ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.BlasLapack -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries/conftest.c:4:10: fatal error: 'windows.h' file not found #include ^~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_CreateCompatibleDC() { CreateCompatibleDC(0);; } int main() { _check_CreateCompatibleDC();; return 0; } Compile failed inside link Checking for type: int32_t ===== Checking compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.BlasLapack -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types/conftest.c:11:9: warning: unused variable 'a' [-Wunused-variable] int32_t a;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { int32_t a;; return 0; } int32_t found ===== Checking compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.BlasLapack -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest.c:6:7: warning: unused variable 'u' [-Wunused-variable] uid_t u; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { uid_t u; ; return 0; } ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.BlasLapack -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest.c:8:5: warning: unused variable 'a' [-Wunused-variable] int a=R_OK; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #if defined(PETSC_HAVE_UNISTD_H) #include #endif int main() { int a=R_OK; ; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest.o -lc++ -ldl ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.BlasLapack -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int a=0; if (S_ISDIR(a)){} ; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest.o -lc++ -ldl ===== Checking compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.BlasLapack -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest.c:3:10: fatal error: 'windows.h' file not found #include ^~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { LARGE_INTEGER a; DWORD b=a.u.HighPart; ; return 0; } ===== Checking compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.BlasLapack -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest.c:3:10: fatal error: 'windows.h' file not found #include ^~~~~~~~~~~ 1 error generated. Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int flags = O_BINARY;; return 0; } Defined "REPLACE_DIR_SEPARATOR" to "'\\'" Defined "DIR_SEPARATOR" to "'/'" Defined "DIR" to ""/Users/jacobfaibussowitsch/NoSync/petscpackages"" Defined make macro "wPETSC_DIR" to "/Users/jacobfaibussowitsch/NoSync/petscpackages" Defined make macro "DATAFILESPATH" to "/Users/jacobfaibussowitsch/NoSync/petsc/../datafiles" Defined "ARCH" to """" ============================================================================================= TESTING: configureCygwinBrokenPipe from PETSc.Configure(config/PETSc/Configure.py:808) Cygwin version <= 1.7.18 had issues with pipes and long commands invoked from gnu-make http://cygwin.com/ml/cygwin/2013-05/msg00340.html Executing: uname -s stdout: Darwin ============================================================================================= TESTING: configureDefaultArch from PETSc.Configure(config/PETSc/Configure.py:824) ============================================================================================= TESTING: configureScript from PETSc.Configure(config/PETSc/Configure.py:841) Output a script in the conf directory which will reproduce the configuration ============================================================================================= TESTING: configureInstall from PETSc.Configure(config/PETSc/Configure.py:880) Setup the directories for installation Defined make rule "print_mesg_after_build" with dependencies "" and code ['-@echo "========================================="', '-@echo "Now to install the libraries do:"', '-@echo "${MAKE_USER} PETSC_DIR=${PETSC_DIR} PETSC_ARCH=${PETSC_ARCH} install"', '-@echo "========================================="'] ============================================================================================= TESTING: configureGCOV from PETSc.Configure(config/PETSc/Configure.py:896) ============================================================================================= TESTING: configureAtoll from PETSc.Configure(config/PETSc/Configure.py:587) Checks if atoll exists ===== Checking linker Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.BlasLapack -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest.c:7:6: warning: unused variable 'v' [-Wunused-variable] long v = atoll("25"); ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #define _POSIX_C_SOURCE 200112L #include int main() { long v = atoll("25"); return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest.o -lc++ -ldl Defined "HAVE_ATOLL" to "1" ============================================================================================= Executing: CC -VV Defined "USE_SOCKET_VIEWER" to "1" ===== Checking compiler Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.BlasLapack -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { setsockopt(0,SOL_SOCKET,SO_REUSEADDR,0,0); return 0; } Defined "HAVE_SO_REUSEADDR" to "1" ============================================================================================= Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -show stdout: clang -fstack-protector -fno-stack-check -Qunused-arguments -g3 -Wno-implicit-function-declaration -Wl,-flat_namespace -Wl,-commons,use_dylibs -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lmpi -lpmpi Defined "MPICC_SHOW" to ""clang -fstack-protector -fno-stack-check -Qunused-arguments -g3 -Wno-implicit-function-declaration -Wl,-flat_namespace -Wl,-commons,use_dylibs -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lmpi -lpmpi"" Defined make macro "CC_FLAGS" to " -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 " Defined "HAVE_CXX" to "1" Defined make macro "CXXPP_FLAGS" to " " Defined make macro "CXX_FLAGS" to " -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g " Defined make macro "CXX_LINKER" to "/Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx" Defined make macro "CXX_LINKER_FLAGS" to " -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g" Defined make macro "CPP_FLAGS" to " " Defined make macro "PCC" to "/Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc" Defined make macro "PCC_FLAGS" to " -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 " Defined make macro "PCPP_FLAGS" to " " Defined make macro "PFLAGS" to "${CFLAGS}" Defined make macro "PPPFLAGS" to "${CPPFLAGS}" Defined make macro "PY_CFLAGS" to "" Defined make macro "PY_CPPFLAGS" to "" Defined make macro "CC_SUFFIX" to "o" Defined make macro "PCC_LINKER" to "/Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc" Defined make macro "PCC_LINKER_FLAGS" to " -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3" Defined make macro "CC_LINKER_SUFFIX" to "" Defined "HAVE_FORTRAN" to "1" Defined make macro "FPP_FLAGS" to "" Defined make macro "FC_FLAGS" to " -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g " Defined make macro "FC_SUFFIX" to "o" Defined make macro "FC_LINKER" to "/Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90" Defined make macro "FC_LINKER_FLAGS" to " -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g" Defined make macro "DARWIN_COMMONS_USE_DYLIBS" to " -Wl,-commons,use_dylibs " Defined make macro "FC_MODULE_FLAG" to "-I" Defined make macro "FC_MODULE_OUTPUT_FLAG" to "-J" Defined make macro "SL_LINKER" to "/Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc" Defined make macro "SL_LINKER_FLAGS" to "${PCC_LINKER_FLAGS}" Defined make macro "SL_LINKER_SUFFIX" to "dylib" Defined "SLSUFFIX" to ""dylib"" Defined make macro "SL_LINKER_LIBS" to "${PETSC_EXTERNAL_LIB_BASIC}" Defined make macro "PETSC_LANGUAGE" to "CONLY" Defined make macro "PETSC_SCALAR" to "real" Defined make macro "PETSC_PRECISION" to "double" ============================================================================================= Defined "HAVE_MUMPS" to "1" Defined make macro "MUMPS_LIB" to "-Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lcmumps -ldmumps -lsmumps -lzmumps -lmumps_common -lpord" Defined make macro "MUMPS_INCLUDE" to "-I/Users/jacobfaibussowitsch/NoSync/petscpackages/include" Defined "HAVE_SCALAPACK" to "1" Defined make macro "SCALAPACK_LIB" to "-Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lscalapack" Defined make macro "SCALAPACK_INCLUDE" to "" Defined make macro "BLASLAPACK_LIB" to "-llapack -lblas" Defined make macro "BLASLAPACK_INCLUDE" to "" Defined "HAVE_PTHREAD" to "1" Defined make macro "PTHREAD_LIB" to "" Defined make macro "PTHREAD_INCLUDE" to "" Defined "HAVE_TRIANGLE" to "1" Defined make macro "TRIANGLE_LIB" to "-Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -ltriangle" Defined make macro "TRIANGLE_INCLUDE" to "-I/Users/jacobfaibussowitsch/NoSync/petscpackages/include" Defined "HAVE_X" to "1" Defined make macro "X_LIB" to "-Wl,-rpath,/opt/X11/lib -L/opt/X11/lib -lX11" Defined make macro "X_INCLUDE" to "-I/opt/X11/include" Defined "HAVE_EXODUSII" to "1" Defined make macro "EXODUSII_LIB" to "-Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lexodus" Defined make macro "EXODUSII_INCLUDE" to "-I/Users/jacobfaibussowitsch/NoSync/petscpackages/include" Defined "HAVE_NETCDF" to "1" Defined make macro "NETCDF_LIB" to "-Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lnetcdf" Defined make macro "NETCDF_INCLUDE" to "-I/Users/jacobfaibussowitsch/NoSync/petscpackages/include" Defined "HAVE_PNETCDF" to "1" Defined make macro "PNETCDF_LIB" to "-Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lpnetcdf" Defined make macro "PNETCDF_INCLUDE" to "-I/Users/jacobfaibussowitsch/NoSync/petscpackages/include" Defined "HAVE_MED" to "1" Defined make macro "MED_LIB" to "-Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lmedC -lmed" Defined make macro "MED_INCLUDE" to "-I/Users/jacobfaibussowitsch/NoSync/petscpackages/include" Defined "HAVE_HDF5" to "1" Defined make macro "HDF5_LIB" to "-Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5" Defined make macro "HDF5_INCLUDE" to "-I/Users/jacobfaibussowitsch/NoSync/petscpackages/include" Defined "HAVE_CHACO" to "1" Defined make macro "CHACO_LIB" to "-Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lchaco" Defined make macro "CHACO_INCLUDE" to "" Defined "HAVE_PARMETIS" to "1" Defined make macro "PARMETIS_LIB" to "-Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lparmetis" Defined make macro "PARMETIS_INCLUDE" to "-I/Users/jacobfaibussowitsch/NoSync/petscpackages/include" Defined "HAVE_METIS" to "1" Defined make macro "METIS_LIB" to "-Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lmetis" Defined make macro "METIS_INCLUDE" to "-I/Users/jacobfaibussowitsch/NoSync/petscpackages/include" Defined "HAVE_MATHLIB" to "1" Defined make macro "MATHLIB_LIB" to "" Defined make macro "MATHLIB_INCLUDE" to "" Defined "HAVE_ZLIB" to "1" Defined make macro "ZLIB_LIB" to "-Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lz" Defined make macro "ZLIB_INCLUDE" to "-I/Users/jacobfaibussowitsch/NoSync/petscpackages/include" Defined "HAVE_REGEX" to "1" Defined make macro "REGEX_LIB" to "" Defined make macro "REGEX_INCLUDE" to "" Defined "HAVE_CTETGEN" to "1" Defined make macro "CTETGEN_LIB" to "-Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lctetgen" Defined make macro "CTETGEN_INCLUDE" to "-I/Users/jacobfaibussowitsch/NoSync/petscpackages/include" Defined "HAVE_MPFR" to "1" Defined make macro "MPFR_LIB" to "-lmpfr" Defined make macro "MPFR_INCLUDE" to "" Defined "HAVE_GMP" to "1" Defined make macro "GMP_LIB" to "-lgmp" Defined make macro "GMP_INCLUDE" to "" Defined "HAVE_SOWING" to "1" Defined make macro "SOWING_LIB" to "" Defined make macro "SOWING_INCLUDE" to "" Defined "HAVE_ZSTD" to "1" Defined make macro "ZSTD_LIB" to "-lzstd" Defined make macro "ZSTD_INCLUDE" to "" Defined make macro "MPI_LIB" to "" Defined make macro "MPI_INCLUDE" to "-I/Users/jacobfaibussowitsch/NoSync/petscpackages/include" Defined "HAVE_MPICH" to "1" Defined make macro "MPICH_LIB" to "" Defined make macro "MPICH_INCLUDE" to "" Defined make macro "PETSC_EXTERNAL_LIB_BASIC" to "-Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -Wl,-rpath,/opt/X11/lib -L/opt/X11/lib -Wl,-rpath,/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -Wl,-rpath,/usr/local/gfortran/lib -L/usr/local/gfortran/lib -lcmumps -ldmumps -lsmumps -lzmumps -lmumps_common -lpord -lscalapack -llapack -lblas -ltriangle -lX11 -lexodus -lnetcdf -lpnetcdf -lmedC -lmed -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -lchaco -lparmetis -lmetis -lz -lctetgen -lmpfr -lgmp -lzstd -lc++ -ldl -lmpifort -lmpi -lpmpi -lgfortran -lquadmath -lm -lc++ -ldl" Defined make macro "PETSC_CC_INCLUDES" to "-I/Users/jacobfaibussowitsch/NoSync/petsc/include -I/Users/jacobfaibussowitsch/NoSync/petsc/master-arch-darwin-c-debug/include -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include -I/opt/X11/include" Defined make macro "PETSC_CC_INCLUDES_INSTALL" to "-I/Users/jacobfaibussowitsch/NoSync/petscpackages/include -I/opt/X11/include" Defined make macro "PETSC_FC_INCLUDES" to "-I/Users/jacobfaibussowitsch/NoSync/petsc/include -I/Users/jacobfaibussowitsch/NoSync/petsc/master-arch-darwin-c-debug/include -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include -I/opt/X11/include" Defined make macro "PETSC_FC_INCLUDES_INSTALL" to "-I/Users/jacobfaibussowitsch/NoSync/petscpackages/include -I/opt/X11/include" Defined "LIB_DIR" to ""/Users/jacobfaibussowitsch/NoSync/petscpackages/lib"" Defined make macro "LIBNAME" to "${INSTALL_LIB_DIR}/libpetsc.${AR_LIB_SUFFIX}" Defined make macro "SHLIBS" to "libpetsc" Defined make macro "PETSC_LIB_BASIC" to "-lpetsc" Defined make macro "PETSC_KSP_LIB_BASIC" to "-lpetsc" Defined make macro "PETSC_TS_LIB_BASIC" to "-lpetsc" Defined make macro "PETSC_TAO_LIB_BASIC" to "-lpetsc" Defined make macro "PETSC_WITH_EXTERNAL_LIB" to "-L${PETSC_DIR}/${PETSC_ARCH}/lib -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -Wl,-rpath,/opt/X11/lib -L/opt/X11/lib -Wl,-rpath,/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -Wl,-rpath,/usr/local/gfortran/lib -L/usr/local/gfortran/lib -lpetsc -lcmumps -ldmumps -lsmumps -lzmumps -lmumps_common -lpord -lscalapack -llapack -lblas -ltriangle -lX11 -lexodus -lnetcdf -lpnetcdf -lmedC -lmed -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -lchaco -lparmetis -lmetis -lz -lctetgen -lmpfr -lgmp -lzstd -lc++ -ldl -lmpifort -lmpi -lpmpi -lgfortran -lquadmath -lm -lc++ -ldl" Defined "USE_SINGLE_LIBRARY" to "1" Defined make macro "PETSC_SYS_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_VEC_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_MAT_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_DM_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_KSP_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_SNES_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_TS_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_TAO_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_CHARACTERISTIC_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_CONTRIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "CONFIGURE_OPTIONS" to "--download-chaco --download-ctetgen --download-exodusii --download-hdf5 --download-med --download-metis --download-mpich --download-mumps --download-netcdf --download-parmetis --download-pnetcdf --download-scalapack --download-triangle --download-zlib --prefix=/Users/jacobfaibussowitsch/NoSync/petscpackages --with-blaslapack --with-cc=clang --with-cxx=clang++ --with-fc=gfortran --with-gmp --with-mpfr --with-python-dir=/usr/local/opt/python/libexec/bin --with-zstd PETSC_ARCH=master-arch-darwin-c-debug" **** master-arch-darwin-c-debug/lib/petsc/conf/petscvariables **** FAST_AR_FLAGS = Scq AR_FLAGS = cr C_VERSION = Apple clang version 12.0.0 (clang-1200.0.32.28) MPICC_SHOW = clang -fstack-protector -fno-stack-check -Qunused-arguments -g3 -Wno-implicit-function-declaration -Wl,-flat_namespace -Wl,-commons,use_dylibs -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lmpi -lpmpi Cxx_VERSION = Apple clang version 12.0.0 (clang-1200.0.32.28) MPICXX_SHOW = clang++ -fstack-protector -fno-stack-check -g -std=c++14 -Wl,-flat_namespace -Wl,-commons,use_dylibs -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lmpicxx -lmpi -lpmpi FC_VERSION = GNU Fortran (GCC) 10.2.0 MPIFC_SHOW = gfortran -ffree-line-length-0 -g -fallow-argument-mismatch -Wl,-flat_namespace -Wl,-commons,use_dylibs -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lmpifort -lmpi -lpmpi C_DEPFLAGS = -MMD -MP CXX_DEPFLAGS = -MMD -MP FC_DEFINE_FLAG = -D FC_DEPFLAGS = -MMD -MP wPETSC_DIR = /Users/jacobfaibussowitsch/NoSync/petscpackages DATAFILESPATH = /Users/jacobfaibussowitsch/NoSync/petsc/../datafiles CC_FLAGS = -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 CXXPP_FLAGS = CXX_FLAGS = -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g CXX_LINKER = /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx CXX_LINKER_FLAGS = -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g CPP_FLAGS = PCC = /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc PCC_FLAGS = -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 PCPP_FLAGS = PFLAGS = ${CFLAGS} PPPFLAGS = ${CPPFLAGS} PY_CFLAGS = PY_CPPFLAGS = CC_SUFFIX = o PCC_LINKER = /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc PCC_LINKER_FLAGS = -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 CC_LINKER_SUFFIX = FPP_FLAGS = FC_FLAGS = -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g FC_SUFFIX = o FC_LINKER = /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 FC_LINKER_FLAGS = -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g DARWIN_COMMONS_USE_DYLIBS = -Wl,-commons,use_dylibs FC_MODULE_FLAG = -I FC_MODULE_OUTPUT_FLAG = -J SL_LINKER = /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc SL_LINKER_FLAGS = ${PCC_LINKER_FLAGS} SL_LINKER_SUFFIX = dylib SL_LINKER_LIBS = ${PETSC_EXTERNAL_LIB_BASIC} PETSC_LANGUAGE = CONLY PETSC_SCALAR = real PETSC_PRECISION = double MUMPS_LIB = -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lcmumps -ldmumps -lsmumps -lzmumps -lmumps_common -lpord MUMPS_INCLUDE = -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include SCALAPACK_LIB = -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lscalapack SCALAPACK_INCLUDE = BLASLAPACK_LIB = -llapack -lblas BLASLAPACK_INCLUDE = PTHREAD_LIB = PTHREAD_INCLUDE = TRIANGLE_LIB = -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -ltriangle TRIANGLE_INCLUDE = -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include X_LIB = -Wl,-rpath,/opt/X11/lib -L/opt/X11/lib -lX11 X_INCLUDE = -I/opt/X11/include EXODUSII_LIB = -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lexodus EXODUSII_INCLUDE = -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include NETCDF_LIB = -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lnetcdf NETCDF_INCLUDE = -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include PNETCDF_LIB = -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lpnetcdf PNETCDF_INCLUDE = -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include MED_LIB = -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lmedC -lmed MED_INCLUDE = -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include HDF5_LIB = -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 HDF5_INCLUDE = -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include CHACO_LIB = -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lchaco CHACO_INCLUDE = PARMETIS_LIB = -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lparmetis PARMETIS_INCLUDE = -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include METIS_LIB = -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lmetis METIS_INCLUDE = -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include MATHLIB_LIB = MATHLIB_INCLUDE = ZLIB_LIB = -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lz ZLIB_INCLUDE = -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include REGEX_LIB = REGEX_INCLUDE = CTETGEN_LIB = -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lctetgen CTETGEN_INCLUDE = -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include MPFR_LIB = -lmpfr MPFR_INCLUDE = GMP_LIB = -lgmp GMP_INCLUDE = SOWING_LIB = SOWING_INCLUDE = ZSTD_LIB = -lzstd ZSTD_INCLUDE = MPI_LIB = MPI_INCLUDE = -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include MPICH_LIB = MPICH_INCLUDE = PETSC_EXTERNAL_LIB_BASIC = -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -Wl,-rpath,/opt/X11/lib -L/opt/X11/lib -Wl,-rpath,/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -Wl,-rpath,/usr/local/gfortran/lib -L/usr/local/gfortran/lib -lcmumps -ldmumps -lsmumps -lzmumps -lmumps_common -lpord -lscalapack -llapack -lblas -ltriangle -lX11 -lexodus -lnetcdf -lpnetcdf -lmedC -lmed -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -lchaco -lparmetis -lmetis -lz -lctetgen -lmpfr -lgmp -lzstd -lc++ -ldl -lmpifort -lmpi -lpmpi -lgfortran -lquadmath -lm -lc++ -ldl PETSC_CC_INCLUDES = -I/Users/jacobfaibussowitsch/NoSync/petsc/include -I/Users/jacobfaibussowitsch/NoSync/petsc/master-arch-darwin-c-debug/include -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include -I/opt/X11/include PETSC_CC_INCLUDES_INSTALL = -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include -I/opt/X11/include PETSC_FC_INCLUDES = -I/Users/jacobfaibussowitsch/NoSync/petsc/include -I/Users/jacobfaibussowitsch/NoSync/petsc/master-arch-darwin-c-debug/include -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include -I/opt/X11/include PETSC_FC_INCLUDES_INSTALL = -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include -I/opt/X11/include LIBNAME = ${INSTALL_LIB_DIR}/libpetsc.${AR_LIB_SUFFIX} SHLIBS = libpetsc PETSC_LIB_BASIC = -lpetsc PETSC_KSP_LIB_BASIC = -lpetsc PETSC_TS_LIB_BASIC = -lpetsc PETSC_TAO_LIB_BASIC = -lpetsc PETSC_WITH_EXTERNAL_LIB = -L${PETSC_DIR}/${PETSC_ARCH}/lib -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -Wl,-rpath,/opt/X11/lib -L/opt/X11/lib -Wl,-rpath,/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -Wl,-rpath,/usr/local/gfortran/lib -L/usr/local/gfortran/lib -lpetsc -lcmumps -ldmumps -lsmumps -lzmumps -lmumps_common -lpord -lscalapack -llapack -lblas -ltriangle -lX11 -lexodus -lnetcdf -lpnetcdf -lmedC -lmed -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -lchaco -lparmetis -lmetis -lz -lctetgen -lmpfr -lgmp -lzstd -lc++ -ldl -lmpifort -lmpi -lpmpi -lgfortran -lquadmath -lm -lc++ -ldl PETSC_SYS_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PETSC_VEC_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PETSC_MAT_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PETSC_DM_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PETSC_KSP_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PETSC_SNES_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PETSC_TS_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PETSC_TAO_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PETSC_CHARACTERISTIC_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PETSC_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PETSC_CONTRIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} CONFIGURE_OPTIONS = --download-chaco --download-ctetgen --download-exodusii --download-hdf5 --download-med --download-metis --download-mpich --download-mumps --download-netcdf --download-parmetis --download-pnetcdf --download-scalapack --download-triangle --download-zlib --prefix=/Users/jacobfaibussowitsch/NoSync/petscpackages --with-blaslapack --with-cc=clang --with-cxx=clang++ --with-fc=gfortran --with-gmp --with-mpfr --with-python-dir=/usr/local/opt/python/libexec/bin --with-zstd PETSC_ARCH=master-arch-darwin-c-debug MKDIR = /bin/mkdir -p SHELL = /bin/sh SED = /usr/local/opt/gnu-sed/libexec/gnubin/sed SEDINPLACE = /usr/local/opt/gnu-sed/libexec/gnubin/sed -i MV = /bin/mv CP = /bin/cp GREP = /usr/bin/grep RM = /bin/rm -f DIFF = /usr/bin/diff -w PYTHON = /usr/local/opt/python@3.9/bin/python3.9 M4 = /usr/bin/m4 CPP = /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -E CXXPP = /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -E AR = /usr/bin/ar RANLIB = /usr/bin/ranlib -c AR_LIB_SUFFIX = a LD_SHARED = /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc DYNAMICLINKER = /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc CC_LINKER_SLFLAG = -Wl,-rpath, FC_LINKER_SLFLAG = -Wl,-rpath, CC = /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc CXX = /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx FC = /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 CLANGUAGE = C GIT = git PREFIXDIR = /Users/jacobfaibussowitsch/NoSync/petscpackages PETSC_SCALAR_SIZE = 64 PETSC_INDEX_SIZE = 32 MAKE = /usr/local/bin/gmake MAKE_USER = make OMAKE_PRINTDIR = /usr/local/bin/gmake --print-directory OMAKE = /usr/local/bin/gmake --no-print-directory MAKE_PAR_OUT_FLG = MAKE_NP = 7 MAKE_TEST_NP = 4 MAKE_LOAD = 12.0 NPMAX = 8 SONAME_FUNCTION = $(1).$(2).dylib SL_LINKER_FUNCTION = -dynamiclib -install_name $(call SONAME_FUNCTION,$(1),$(2)) -compatibility_version $(2) -current_version $(3) -single_module -multiply_defined suppress -undefined dynamic_lookup BUILDSHAREDLIB = yes LLDB = /usr/bin/lldb DSYMUTIL = /usr/bin/dsymutil MPIEXECEXECUTABLE = /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpiexec MPIEXEC = /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpiexec SOCKETFILTERFW = /usr/libexec/ApplicationFirewall/socketfilterfw HOSTNAME = hostname PING = /sbin/ping CMAKE = /usr/local/bin/cmake CTEST = /usr/local/bin/ctest BFORT = /Users/jacobfaibussowitsch/NoSync/petsc/master-arch-darwin-c-debug/bin/bfort DOCTEXT = /Users/jacobfaibussowitsch/NoSync/petsc/master-arch-darwin-c-debug/bin/doctext MAPNAMES = /Users/jacobfaibussowitsch/NoSync/petsc/master-arch-darwin-c-debug/bin/mapnames BIB2HTML = /Users/jacobfaibussowitsch/NoSync/petsc/master-arch-darwin-c-debug/bin/bib2html **** master-arch-darwin-c-debug/lib/petsc/conf/petscrules **** print_mesg_after_build: -@echo "=========================================" -@echo "Now to install the libraries do:" -@echo "${MAKE_USER} PETSC_DIR=${PETSC_DIR} PETSC_ARCH=${PETSC_ARCH} install" -@echo "=========================================" libc: ${LIBNAME}(${OBJSC}) libcxx: ${LIBNAME}(${OBJSCXX}) libcu: ${LIBNAME}(${OBJSCU}) libf: ${OBJSF} -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} shared_arch: shared_darwin amrex-build: amrex-install: mfem-build: mfem-install: slepc-build: slepc-install: bamg-build: bamg-install: hpddm-build: hpddm-install: libmesh-build: libmesh-install: mpi4py-build: mpi4py-install: petsc4py-build: petsc4py-install: petsc4pytest: **** master-arch-darwin-c-debug/include/petscconf.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #define PETSC_ARCH "" #define PETSC_ATTRIBUTEALIGNED(size) __attribute((aligned(size))) #define PETSC_Alignx(a,b) #define PETSC_BLASLAPACK_UNDERSCORE 1 #define PETSC_CLANGUAGE_C 1 #define PETSC_CXX_INLINE inline #define PETSC_CXX_RESTRICT __restrict #define PETSC_C_INLINE inline #define PETSC_C_RESTRICT __restrict #define PETSC_DEPRECATED_ENUM(why) __attribute((deprecated)) #define PETSC_DEPRECATED_FUNCTION(why) __attribute((deprecated)) #define PETSC_DEPRECATED_MACRO(why) _Pragma(why) #define PETSC_DEPRECATED_TYPEDEF(why) __attribute((deprecated)) #define PETSC_DIR "/Users/jacobfaibussowitsch/NoSync/petscpackages" #define PETSC_DIR_SEPARATOR '/' #define PETSC_DO_NOT_SWAP_CHILD_FOR_DEBUGGER 1 #define PETSC_FORTRAN_CHARLEN_T size_t #define PETSC_FORTRAN_TYPE_INITIALIZE = -2 #define PETSC_FUNCTION_NAME_C __func__ #define PETSC_FUNCTION_NAME_CXX __func__ #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_ATOLL 1 #define PETSC_HAVE_ATTRIBUTEALIGNED 1 #define PETSC_HAVE_BUILTIN_EXPECT 1 #define PETSC_HAVE_BZERO 1 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_HAVE_CHACO 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_CLOSURE 1 #define PETSC_HAVE_CTETGEN 1 #define PETSC_HAVE_CXX 1 #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_HAVE_CXX_DIALECT_CXX11 1 #define PETSC_HAVE_CXX_DIALECT_CXX14 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_DOUBLE_ALIGN_MALLOC 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_HAVE_ERF 1 #define PETSC_HAVE_EXODUSII 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_FENV_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_FORTRAN 1 #define PETSC_HAVE_FORTRAN_FLUSH 1 #define PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT 1 #define PETSC_HAVE_FORTRAN_TYPE_STAR 1 #define PETSC_HAVE_FORTRAN_UNDERSCORE 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_GETWD 1 #define PETSC_HAVE_GMP 1 #define PETSC_HAVE_HDF5 1 #define PETSC_HAVE_IMMINTRIN_H 1 #define PETSC_HAVE_INTTYPES_H 1 #define PETSC_HAVE_ISINF 1 #define PETSC_HAVE_ISNAN 1 #define PETSC_HAVE_ISNORMAL 1 #define PETSC_HAVE_LGAMMA 1 #define PETSC_HAVE_LOG2 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_MACHINE_ENDIAN_H 1 #define PETSC_HAVE_MED 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE_METIS 1 #define PETSC_HAVE_MMAP 1 #define PETSC_HAVE_MPFR 1 #define PETSC_HAVE_MPICH 1 #define PETSC_HAVE_MPICH_NUMVERSION 30302300 #define PETSC_HAVE_MPIEXEC_ENVIRONMENTAL_VARIABLE MPIR_CVAR_CH3 #define PETSC_HAVE_MPIIO 1 #define PETSC_HAVE_MPI_COMBINER_CONTIGUOUS 1 #define PETSC_HAVE_MPI_COMBINER_DUP 1 #define PETSC_HAVE_MPI_COMBINER_NAMED 1 #define PETSC_HAVE_MPI_C_DOUBLE_COMPLEX 1 #define PETSC_HAVE_MPI_EXSCAN 1 #define PETSC_HAVE_MPI_F90MODULE 1 #define PETSC_HAVE_MPI_FINALIZED 1 #define PETSC_HAVE_MPI_GET_ACCUMULATE 1 #define PETSC_HAVE_MPI_GET_LIBRARY_VERSION 1 #define PETSC_HAVE_MPI_IALLREDUCE 1 #define PETSC_HAVE_MPI_IBARRIER 1 #define PETSC_HAVE_MPI_INIT_THREAD 1 #define PETSC_HAVE_MPI_INT64_T 1 #define PETSC_HAVE_MPI_IN_PLACE 1 #define PETSC_HAVE_MPI_LONG_DOUBLE 1 #define PETSC_HAVE_MPI_NEIGHBORHOOD_COLLECTIVES 1 #define PETSC_HAVE_MPI_NONBLOCKING_COLLECTIVES 1 #define PETSC_HAVE_MPI_ONE_SIDED 1 #define PETSC_HAVE_MPI_PROCESS_SHARED_MEMORY 1 #define PETSC_HAVE_MPI_REDUCE_LOCAL 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER_BLOCK 1 #define PETSC_HAVE_MPI_RGET 1 #define PETSC_HAVE_MPI_TYPE_DUP 1 #define PETSC_HAVE_MPI_TYPE_GET_ENVELOPE 1 #define PETSC_HAVE_MPI_WIN_CREATE 1 #define PETSC_HAVE_MUMPS 1 #define PETSC_HAVE_NANOSLEEP 1 #define PETSC_HAVE_NETCDF 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_PARMETIS 1 #define PETSC_HAVE_PNETCDF 1 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_PTHREAD 1 #define PETSC_HAVE_PTHREAD_H 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_REGEX 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_SCALAPACK 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_SOWING 1 #define PETSC_HAVE_SO_REUSEADDR 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_STRUCT_SIGACTION 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_SYS_SYSCTL_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_TRIANGLE 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_USLEEP 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_HAVE_X 1 #define PETSC_HAVE_XMMINTRIN_H 1 #define PETSC_HAVE_ZSTD 1 #define PETSC_HDF5_HAVE_PARALLEL 1 #define PETSC_HDF5_HAVE_ZLIB 1 #define PETSC_IS_COLORING_MAX USHRT_MAX #define PETSC_IS_COLORING_VALUE_TYPE short #define PETSC_IS_COLORING_VALUE_TYPE_F integer2 #define PETSC_LEVEL1_DCACHE_LINESIZE 32 #define PETSC_LIB_DIR "/Users/jacobfaibussowitsch/NoSync/petscpackages/lib" #define PETSC_MAX_PATH_LEN 1024 #define PETSC_MEMALIGN 16 #define PETSC_MPICC_SHOW "clang -fstack-protector -fno-stack-check -Qunused-arguments -g3 -Wno-implicit-function-declaration -Wl,-flat_namespace -Wl,-commons,use_dylibs -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lmpi -lpmpi" #define PETSC_MPIU_IS_COLORING_VALUE_TYPE MPI_UNSIGNED_SHORT #define PETSC_PREFETCH_HINT_NTA _MM_HINT_NTA #define PETSC_PREFETCH_HINT_T0 _MM_HINT_T0 #define PETSC_PREFETCH_HINT_T1 _MM_HINT_T1 #define PETSC_PREFETCH_HINT_T2 _MM_HINT_T2 #define PETSC_PYTHON_EXE "/usr/local/opt/python@3.9/bin/python3.9" #define PETSC_Prefetch(a,b,c) _mm_prefetch((const char*)(a),(c)) #define PETSC_REPLACE_DIR_SEPARATOR '\\' #define PETSC_RTLD_DEFAULT 1 #define PETSC_SIGNAL_CAST #define PETSC_SIZEOF_ENUM 4 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG 8 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_SLSUFFIX "dylib" #define PETSC_UINTPTR_T uintptr_t #define PETSC_UNUSED __attribute((unused)) #define PETSC_USE_AVX512_KERNELS 1 #define PETSC_USE_BACKWARD_LOOP 1 #define PETSC_USE_CTABLE 1 #define PETSC_USE_DEBUG 1 #define PETSC_USE_DEBUGGER "lldb" #define PETSC_USE_INFO 1 #define PETSC_USE_ISATTY 1 #define PETSC_USE_LOG 1 #define PETSC_USE_REAL_DOUBLE 1 #define PETSC_USE_SHARED_LIBRARIES 1 #define PETSC_USE_SINGLE_LIBRARY 1 #define PETSC_USE_SOCKET_VIEWER 1 #define PETSC_USE_VISIBILITY_C 1 #define PETSC_USE_VISIBILITY_CXX 1 #define PETSC_USING_F2003 1 #define PETSC_USING_F90FREEFORM 1 #define PETSC_VERSION_BRANCH_GIT "master" #define PETSC_VERSION_DATE_GIT "2020-12-21 19:21:21 +0000" #define PETSC_VERSION_GIT "v3.14.2-315-ga02893ccf2" #define PETSC__BSD_SOURCE 1 #define PETSC__DEFAULT_SOURCE 1 #endif **** master-arch-darwin-c-debug/include/petscfix.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #if defined(__cplusplus) extern "C" { } #else #endif #endif **** master-arch-darwin-c-debug/include/petscpkg_version.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #define PETSC_PKG_MPI_VERSION_MAJOR 3 #define PETSC_PKG_MPI_VERSION_MINOR 0 #define PETSC_PKG_MPI_VERSION_SUBMINOR 0 #define PETSC_PKG_MPI_VERSION_ PETSC_PKG_MPI_VERSION_EQ #define PETSC_PKG_MPI_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ ((PETSC_PKG_MPI_VERSION_MAJOR == (MAJOR)) && \ (PETSC_PKG_MPI_VERSION_MINOR == (MINOR)) && \ (PETSC_PKG_MPI_VERSION_SUBMINOR == (SUBMINOR))) #define PETSC_PKG_MPI_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_MPI_VERSION_MAJOR < (MAJOR) || \ (PETSC_PKG_MPI_VERSION_MAJOR == (MAJOR) && \ (PETSC_PKG_MPI_VERSION_MINOR < (MINOR) || \ (PETSC_PKG_MPI_VERSION_MINOR == (MINOR) && \ (PETSC_PKG_MPI_VERSION_SUBMINOR < (SUBMINOR)))))) #define PETSC_PKG_MPI_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_MPI_VERSION_LT(MAJOR,MINOR,SUBMINOR) || \ PETSC_PKG_MPI_VERSION_EQ(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_MPI_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_MPI_VERSION_LE(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_MPI_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_MPI_VERSION_LT(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_HDF5_VERSION_MAJOR 1 #define PETSC_PKG_HDF5_VERSION_MINOR 12 #define PETSC_PKG_HDF5_VERSION_SUBMINOR 0 #define PETSC_PKG_HDF5_VERSION_ PETSC_PKG_HDF5_VERSION_EQ #define PETSC_PKG_HDF5_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ ((PETSC_PKG_HDF5_VERSION_MAJOR == (MAJOR)) && \ (PETSC_PKG_HDF5_VERSION_MINOR == (MINOR)) && \ (PETSC_PKG_HDF5_VERSION_SUBMINOR == (SUBMINOR))) #define PETSC_PKG_HDF5_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_HDF5_VERSION_MAJOR < (MAJOR) || \ (PETSC_PKG_HDF5_VERSION_MAJOR == (MAJOR) && \ (PETSC_PKG_HDF5_VERSION_MINOR < (MINOR) || \ (PETSC_PKG_HDF5_VERSION_MINOR == (MINOR) && \ (PETSC_PKG_HDF5_VERSION_SUBMINOR < (SUBMINOR)))))) #define PETSC_PKG_HDF5_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_HDF5_VERSION_LT(MAJOR,MINOR,SUBMINOR) || \ PETSC_PKG_HDF5_VERSION_EQ(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_HDF5_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_HDF5_VERSION_LE(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_HDF5_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_HDF5_VERSION_LT(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_NETCDF_VERSION_MAJOR 4 #define PETSC_PKG_NETCDF_VERSION_MINOR 5 #define PETSC_PKG_NETCDF_VERSION_SUBMINOR 0 #define PETSC_PKG_NETCDF_VERSION_ PETSC_PKG_NETCDF_VERSION_EQ #define PETSC_PKG_NETCDF_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ ((PETSC_PKG_NETCDF_VERSION_MAJOR == (MAJOR)) && \ (PETSC_PKG_NETCDF_VERSION_MINOR == (MINOR)) && \ (PETSC_PKG_NETCDF_VERSION_SUBMINOR == (SUBMINOR))) #define PETSC_PKG_NETCDF_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_NETCDF_VERSION_MAJOR < (MAJOR) || \ (PETSC_PKG_NETCDF_VERSION_MAJOR == (MAJOR) && \ (PETSC_PKG_NETCDF_VERSION_MINOR < (MINOR) || \ (PETSC_PKG_NETCDF_VERSION_MINOR == (MINOR) && \ (PETSC_PKG_NETCDF_VERSION_SUBMINOR < (SUBMINOR)))))) #define PETSC_PKG_NETCDF_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_NETCDF_VERSION_LT(MAJOR,MINOR,SUBMINOR) || \ PETSC_PKG_NETCDF_VERSION_EQ(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_NETCDF_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_NETCDF_VERSION_LE(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_NETCDF_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_NETCDF_VERSION_LT(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_PNETCDF_VERSION_MAJOR 1 #define PETSC_PKG_PNETCDF_VERSION_MINOR 12 #define PETSC_PKG_PNETCDF_VERSION_SUBMINOR 1 #define PETSC_PKG_PNETCDF_VERSION_ PETSC_PKG_PNETCDF_VERSION_EQ #define PETSC_PKG_PNETCDF_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ ((PETSC_PKG_PNETCDF_VERSION_MAJOR == (MAJOR)) && \ (PETSC_PKG_PNETCDF_VERSION_MINOR == (MINOR)) && \ (PETSC_PKG_PNETCDF_VERSION_SUBMINOR == (SUBMINOR))) #define PETSC_PKG_PNETCDF_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_PNETCDF_VERSION_MAJOR < (MAJOR) || \ (PETSC_PKG_PNETCDF_VERSION_MAJOR == (MAJOR) && \ (PETSC_PKG_PNETCDF_VERSION_MINOR < (MINOR) || \ (PETSC_PKG_PNETCDF_VERSION_MINOR == (MINOR) && \ (PETSC_PKG_PNETCDF_VERSION_SUBMINOR < (SUBMINOR)))))) #define PETSC_PKG_PNETCDF_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_PNETCDF_VERSION_LT(MAJOR,MINOR,SUBMINOR) || \ PETSC_PKG_PNETCDF_VERSION_EQ(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_PNETCDF_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_PNETCDF_VERSION_LE(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_PNETCDF_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_PNETCDF_VERSION_LT(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_METIS_VERSION_MAJOR 5 #define PETSC_PKG_METIS_VERSION_MINOR 1 #define PETSC_PKG_METIS_VERSION_SUBMINOR 0 #define PETSC_PKG_METIS_VERSION_ PETSC_PKG_METIS_VERSION_EQ #define PETSC_PKG_METIS_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ ((PETSC_PKG_METIS_VERSION_MAJOR == (MAJOR)) && \ (PETSC_PKG_METIS_VERSION_MINOR == (MINOR)) && \ (PETSC_PKG_METIS_VERSION_SUBMINOR == (SUBMINOR))) #define PETSC_PKG_METIS_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_METIS_VERSION_MAJOR < (MAJOR) || \ (PETSC_PKG_METIS_VERSION_MAJOR == (MAJOR) && \ (PETSC_PKG_METIS_VERSION_MINOR < (MINOR) || \ (PETSC_PKG_METIS_VERSION_MINOR == (MINOR) && \ (PETSC_PKG_METIS_VERSION_SUBMINOR < (SUBMINOR)))))) #define PETSC_PKG_METIS_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_METIS_VERSION_LT(MAJOR,MINOR,SUBMINOR) || \ PETSC_PKG_METIS_VERSION_EQ(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_METIS_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_METIS_VERSION_LE(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_METIS_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_METIS_VERSION_LT(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_PARMETIS_VERSION_MAJOR 4 #define PETSC_PKG_PARMETIS_VERSION_MINOR 0 #define PETSC_PKG_PARMETIS_VERSION_SUBMINOR 3 #define PETSC_PKG_PARMETIS_VERSION_ PETSC_PKG_PARMETIS_VERSION_EQ #define PETSC_PKG_PARMETIS_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ ((PETSC_PKG_PARMETIS_VERSION_MAJOR == (MAJOR)) && \ (PETSC_PKG_PARMETIS_VERSION_MINOR == (MINOR)) && \ (PETSC_PKG_PARMETIS_VERSION_SUBMINOR == (SUBMINOR))) #define PETSC_PKG_PARMETIS_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_PARMETIS_VERSION_MAJOR < (MAJOR) || \ (PETSC_PKG_PARMETIS_VERSION_MAJOR == (MAJOR) && \ (PETSC_PKG_PARMETIS_VERSION_MINOR < (MINOR) || \ (PETSC_PKG_PARMETIS_VERSION_MINOR == (MINOR) && \ (PETSC_PKG_PARMETIS_VERSION_SUBMINOR < (SUBMINOR)))))) #define PETSC_PKG_PARMETIS_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_PARMETIS_VERSION_LT(MAJOR,MINOR,SUBMINOR) || \ PETSC_PKG_PARMETIS_VERSION_EQ(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_PARMETIS_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_PARMETIS_VERSION_LE(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_PARMETIS_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_PARMETIS_VERSION_LT(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_MUMPS_VERSION_MAJOR 5 #define PETSC_PKG_MUMPS_VERSION_MINOR 2 #define PETSC_PKG_MUMPS_VERSION_SUBMINOR 1 #define PETSC_PKG_MUMPS_VERSION_ PETSC_PKG_MUMPS_VERSION_EQ #define PETSC_PKG_MUMPS_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ ((PETSC_PKG_MUMPS_VERSION_MAJOR == (MAJOR)) && \ (PETSC_PKG_MUMPS_VERSION_MINOR == (MINOR)) && \ (PETSC_PKG_MUMPS_VERSION_SUBMINOR == (SUBMINOR))) #define PETSC_PKG_MUMPS_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_MUMPS_VERSION_MAJOR < (MAJOR) || \ (PETSC_PKG_MUMPS_VERSION_MAJOR == (MAJOR) && \ (PETSC_PKG_MUMPS_VERSION_MINOR < (MINOR) || \ (PETSC_PKG_MUMPS_VERSION_MINOR == (MINOR) && \ (PETSC_PKG_MUMPS_VERSION_SUBMINOR < (SUBMINOR)))))) #define PETSC_PKG_MUMPS_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_MUMPS_VERSION_LT(MAJOR,MINOR,SUBMINOR) || \ PETSC_PKG_MUMPS_VERSION_EQ(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_MUMPS_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_MUMPS_VERSION_LE(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_MUMPS_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_MUMPS_VERSION_LT(MAJOR,MINOR,SUBMINOR)) #endif ============================================================================================= Compiling Ctetgen; this may take several minutes ============================================================================================= Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.BlasLapack -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -O0 /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -c -o /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.o -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.closure -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilersFortran -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.headers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.cacheDetails -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.functions -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.getResidentSetSize -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.featureTestMacros -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.utilities.missing -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.compilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.options.scalarTypes -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.MPI -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.metis -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.pthread -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.packages.BlasLapack -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.libraries -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.types -I/var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 -mfp16-format=ieee /var/folders/9w/7dlszmmn6q1gd5yf3r9n79bc0000gn/T/petsc-hw81i6fx/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 1 stderr: clang: error: unknown argument: '-mfp16-format=ieee' Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -mfp16-format=ieee due to nonzero status from link Rejecting compiler flag -mfp16-format=ieee due to clang: error: unknown argument: '-mfp16-format=ieee' PETSc Error: No output file produced Executing: /usr/local/bin/gmake PETSC_DIR=/Users/jacobfaibussowitsch/NoSync/petsc clean lib PCC_FLAGS="-O0 -g3" stdout: /bin/rm -f libctetgen.a ctetgen.o predicates.o /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -O0 -g3 -I/Users/jacobfaibussowitsch/NoSync/petsc/include -I/Users/jacobfaibussowitsch/NoSync/petsc/master-arch-darwin-c-debug/include -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include -I/opt/X11/include -c -o ctetgen.o ctetgen.c /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -O0 -g3 -I/Users/jacobfaibussowitsch/NoSync/petsc/include -I/Users/jacobfaibussowitsch/NoSync/petsc/master-arch-darwin-c-debug/include -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include -I/opt/X11/include -c -o predicates.o predicates.c /usr/bin/ar cr libctetgen.a ctetgen.o predicates.o /usr/bin/ranlib -c libctetgen.a /bin/rm -f libctetgen.a ctetgen.o predicates.o /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -O0 -g3 -I/Users/jacobfaibussowitsch/NoSync/petsc/include -I/Users/jacobfaibussowitsch/NoSync/petsc/master-arch-darwin-c-debug/include -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include -I/opt/X11/include -c -o ctetgen.o ctetgen.c /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -O0 -g3 -I/Users/jacobfaibussowitsch/NoSync/petsc/include -I/Users/jacobfaibussowitsch/NoSync/petsc/master-arch-darwin-c-debug/include -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include -I/opt/X11/include -c -o predicates.o predicates.c /usr/bin/ar cr libctetgen.a ctetgen.o predicates.o /usr/bin/ranlib -c libctetgen.a ============================================================================================= Installing Ctetgen; this may take several minutes ============================================================================================= Executing: /usr/local/bin/gmake PETSC_DIR=/Users/jacobfaibussowitsch/NoSync/petsc prefix=/Users/jacobfaibussowitsch/NoSync/petscpackages install-ctetgen stdout: mkdir -p "/Users/jacobfaibussowitsch/NoSync/petscpackages/include" "/Users/jacobfaibussowitsch/NoSync/petscpackages/lib" install -m644 ctetgen.h "/Users/jacobfaibussowitsch/NoSync/petscpackages/include/" install -m644 libctetgen.a "/Users/jacobfaibussowitsch/NoSync/petscpackages/lib/" mkdir -p "/Users/jacobfaibussowitsch/NoSync/petscpackages/include" "/Users/jacobfaibussowitsch/NoSync/petscpackages/lib" install -m644 ctetgen.h "/Users/jacobfaibussowitsch/NoSync/petscpackages/include/" install -m644 libctetgen.a "/Users/jacobfaibussowitsch/NoSync/petscpackages/lib/"================================================================================ child PETSc.Configure 10.442105 child sum 123.112727 child total 123.135446 **** master-arch-darwin-c-debug/lib/petsc/conf/petscvariables **** FAST_AR_FLAGS = Scq AR_FLAGS = cr C_VERSION = Apple clang version 12.0.0 (clang-1200.0.32.28) MPICC_SHOW = clang -fstack-protector -fno-stack-check -Qunused-arguments -g3 -Wno-implicit-function-declaration -Wl,-flat_namespace -Wl,-commons,use_dylibs -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lmpi -lpmpi Cxx_VERSION = Apple clang version 12.0.0 (clang-1200.0.32.28) MPICXX_SHOW = clang++ -fstack-protector -fno-stack-check -g -std=c++14 -Wl,-flat_namespace -Wl,-commons,use_dylibs -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lmpicxx -lmpi -lpmpi FC_VERSION = GNU Fortran (GCC) 10.2.0 MPIFC_SHOW = gfortran -ffree-line-length-0 -g -fallow-argument-mismatch -Wl,-flat_namespace -Wl,-commons,use_dylibs -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lmpifort -lmpi -lpmpi C_DEPFLAGS = -MMD -MP CXX_DEPFLAGS = -MMD -MP FC_DEFINE_FLAG = -D FC_DEPFLAGS = -MMD -MP wPETSC_DIR = /Users/jacobfaibussowitsch/NoSync/petscpackages DATAFILESPATH = /Users/jacobfaibussowitsch/NoSync/petsc/../datafiles CC_FLAGS = -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 CXXPP_FLAGS = CXX_FLAGS = -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g CXX_LINKER = /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx CXX_LINKER_FLAGS = -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g CPP_FLAGS = PCC = /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc PCC_FLAGS = -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 PCPP_FLAGS = PFLAGS = ${CFLAGS} PPPFLAGS = ${CPPFLAGS} PY_CFLAGS = PY_CPPFLAGS = CC_SUFFIX = o PCC_LINKER = /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc PCC_LINKER_FLAGS = -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 CC_LINKER_SUFFIX = FPP_FLAGS = FC_FLAGS = -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g FC_SUFFIX = o FC_LINKER = /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 FC_LINKER_FLAGS = -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g DARWIN_COMMONS_USE_DYLIBS = -Wl,-commons,use_dylibs FC_MODULE_FLAG = -I FC_MODULE_OUTPUT_FLAG = -J SL_LINKER = /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc SL_LINKER_FLAGS = ${PCC_LINKER_FLAGS} SL_LINKER_SUFFIX = dylib SL_LINKER_LIBS = ${PETSC_EXTERNAL_LIB_BASIC} PETSC_LANGUAGE = CONLY PETSC_SCALAR = real PETSC_PRECISION = double MUMPS_LIB = -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lcmumps -ldmumps -lsmumps -lzmumps -lmumps_common -lpord MUMPS_INCLUDE = -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include SCALAPACK_LIB = -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lscalapack SCALAPACK_INCLUDE = BLASLAPACK_LIB = -llapack -lblas BLASLAPACK_INCLUDE = PTHREAD_LIB = PTHREAD_INCLUDE = TRIANGLE_LIB = -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -ltriangle TRIANGLE_INCLUDE = -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include X_LIB = -Wl,-rpath,/opt/X11/lib -L/opt/X11/lib -lX11 X_INCLUDE = -I/opt/X11/include EXODUSII_LIB = -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lexodus EXODUSII_INCLUDE = -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include NETCDF_LIB = -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lnetcdf NETCDF_INCLUDE = -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include PNETCDF_LIB = -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lpnetcdf PNETCDF_INCLUDE = -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include MED_LIB = -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lmedC -lmed MED_INCLUDE = -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include HDF5_LIB = -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 HDF5_INCLUDE = -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include CHACO_LIB = -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lchaco CHACO_INCLUDE = PARMETIS_LIB = -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lparmetis PARMETIS_INCLUDE = -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include METIS_LIB = -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lmetis METIS_INCLUDE = -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include MATHLIB_LIB = MATHLIB_INCLUDE = ZLIB_LIB = -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lz ZLIB_INCLUDE = -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include REGEX_LIB = REGEX_INCLUDE = CTETGEN_LIB = -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lctetgen CTETGEN_INCLUDE = -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include MPFR_LIB = -lmpfr MPFR_INCLUDE = GMP_LIB = -lgmp GMP_INCLUDE = SOWING_LIB = SOWING_INCLUDE = ZSTD_LIB = -lzstd ZSTD_INCLUDE = MPI_LIB = MPI_INCLUDE = -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include MPICH_LIB = MPICH_INCLUDE = PETSC_EXTERNAL_LIB_BASIC = -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -Wl,-rpath,/opt/X11/lib -L/opt/X11/lib -Wl,-rpath,/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -Wl,-rpath,/usr/local/gfortran/lib -L/usr/local/gfortran/lib -lcmumps -ldmumps -lsmumps -lzmumps -lmumps_common -lpord -lscalapack -llapack -lblas -ltriangle -lX11 -lexodus -lnetcdf -lpnetcdf -lmedC -lmed -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -lchaco -lparmetis -lmetis -lz -lctetgen -lmpfr -lgmp -lzstd -lc++ -ldl -lmpifort -lmpi -lpmpi -lgfortran -lquadmath -lm -lc++ -ldl PETSC_CC_INCLUDES = -I/Users/jacobfaibussowitsch/NoSync/petsc/include -I/Users/jacobfaibussowitsch/NoSync/petsc/master-arch-darwin-c-debug/include -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include -I/opt/X11/include PETSC_CC_INCLUDES_INSTALL = -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include -I/opt/X11/include PETSC_FC_INCLUDES = -I/Users/jacobfaibussowitsch/NoSync/petsc/include -I/Users/jacobfaibussowitsch/NoSync/petsc/master-arch-darwin-c-debug/include -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include -I/opt/X11/include PETSC_FC_INCLUDES_INSTALL = -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include -I/opt/X11/include LIBNAME = ${INSTALL_LIB_DIR}/libpetsc.${AR_LIB_SUFFIX} SHLIBS = libpetsc PETSC_LIB_BASIC = -lpetsc PETSC_KSP_LIB_BASIC = -lpetsc PETSC_TS_LIB_BASIC = -lpetsc PETSC_TAO_LIB_BASIC = -lpetsc PETSC_WITH_EXTERNAL_LIB = -L${PETSC_DIR}/${PETSC_ARCH}/lib -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -Wl,-rpath,/opt/X11/lib -L/opt/X11/lib -Wl,-rpath,/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin19/10.2.0 -Wl,-rpath,/usr/local/gfortran/lib -L/usr/local/gfortran/lib -lpetsc -lcmumps -ldmumps -lsmumps -lzmumps -lmumps_common -lpord -lscalapack -llapack -lblas -ltriangle -lX11 -lexodus -lnetcdf -lpnetcdf -lmedC -lmed -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -lchaco -lparmetis -lmetis -lz -lctetgen -lmpfr -lgmp -lzstd -lc++ -ldl -lmpifort -lmpi -lpmpi -lgfortran -lquadmath -lm -lc++ -ldl PETSC_SYS_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PETSC_VEC_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PETSC_MAT_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PETSC_DM_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PETSC_KSP_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PETSC_SNES_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PETSC_TS_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PETSC_TAO_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PETSC_CHARACTERISTIC_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PETSC_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PETSC_CONTRIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} CONFIGURE_OPTIONS = --download-chaco --download-ctetgen --download-exodusii --download-hdf5 --download-med --download-metis --download-mpich --download-mumps --download-netcdf --download-parmetis --download-pnetcdf --download-scalapack --download-triangle --download-zlib --prefix=/Users/jacobfaibussowitsch/NoSync/petscpackages --with-blaslapack --with-cc=clang --with-cxx=clang++ --with-fc=gfortran --with-gmp --with-mpfr --with-python-dir=/usr/local/opt/python/libexec/bin --with-zstd PETSC_ARCH=master-arch-darwin-c-debug MKDIR = /bin/mkdir -p SHELL = /bin/sh SED = /usr/local/opt/gnu-sed/libexec/gnubin/sed SEDINPLACE = /usr/local/opt/gnu-sed/libexec/gnubin/sed -i MV = /bin/mv CP = /bin/cp GREP = /usr/bin/grep RM = /bin/rm -f DIFF = /usr/bin/diff -w PYTHON = /usr/local/opt/python@3.9/bin/python3.9 M4 = /usr/bin/m4 CPP = /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -E CXXPP = /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -E AR = /usr/bin/ar RANLIB = /usr/bin/ranlib -c AR_LIB_SUFFIX = a LD_SHARED = /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc DYNAMICLINKER = /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc CC_LINKER_SLFLAG = -Wl,-rpath, FC_LINKER_SLFLAG = -Wl,-rpath, CC = /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc CXX = /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx FC = /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 CLANGUAGE = C GIT = git PREFIXDIR = /Users/jacobfaibussowitsch/NoSync/petscpackages PETSC_SCALAR_SIZE = 64 PETSC_INDEX_SIZE = 32 MAKE = /usr/local/bin/gmake MAKE_USER = make OMAKE_PRINTDIR = /usr/local/bin/gmake --print-directory OMAKE = /usr/local/bin/gmake --no-print-directory MAKE_PAR_OUT_FLG = MAKE_NP = 7 MAKE_TEST_NP = 4 MAKE_LOAD = 12.0 NPMAX = 8 SONAME_FUNCTION = $(1).$(2).dylib SL_LINKER_FUNCTION = -dynamiclib -install_name $(call SONAME_FUNCTION,$(1),$(2)) -compatibility_version $(2) -current_version $(3) -single_module -multiply_defined suppress -undefined dynamic_lookup BUILDSHAREDLIB = yes LLDB = /usr/bin/lldb DSYMUTIL = /usr/bin/dsymutil MPIEXECEXECUTABLE = /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpiexec MPIEXEC = /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpiexec SOCKETFILTERFW = /usr/libexec/ApplicationFirewall/socketfilterfw HOSTNAME = hostname PING = /sbin/ping CMAKE = /usr/local/bin/cmake CTEST = /usr/local/bin/ctest BFORT = /Users/jacobfaibussowitsch/NoSync/petsc/master-arch-darwin-c-debug/bin/bfort DOCTEXT = /Users/jacobfaibussowitsch/NoSync/petsc/master-arch-darwin-c-debug/bin/doctext MAPNAMES = /Users/jacobfaibussowitsch/NoSync/petsc/master-arch-darwin-c-debug/bin/mapnames BIB2HTML = /Users/jacobfaibussowitsch/NoSync/petsc/master-arch-darwin-c-debug/bin/bib2html **** master-arch-darwin-c-debug/lib/petsc/conf/petscrules **** print_mesg_after_build: -@echo "=========================================" -@echo "Now to install the libraries do:" -@echo "${MAKE_USER} PETSC_DIR=${PETSC_DIR} PETSC_ARCH=${PETSC_ARCH} install" -@echo "=========================================" libc: ${LIBNAME}(${OBJSC}) libcxx: ${LIBNAME}(${OBJSCXX}) libcu: ${LIBNAME}(${OBJSCU}) libf: ${OBJSF} -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} shared_arch: shared_darwin amrex-build: amrex-install: mfem-build: mfem-install: slepc-build: slepc-install: bamg-build: bamg-install: hpddm-build: hpddm-install: libmesh-build: libmesh-install: mpi4py-build: mpi4py-install: petsc4py-build: petsc4py-install: petsc4pytest: **** master-arch-darwin-c-debug/include/petscconf.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #define PETSC_ARCH "" #define PETSC_ATTRIBUTEALIGNED(size) __attribute((aligned(size))) #define PETSC_Alignx(a,b) #define PETSC_BLASLAPACK_UNDERSCORE 1 #define PETSC_CLANGUAGE_C 1 #define PETSC_CXX_INLINE inline #define PETSC_CXX_RESTRICT __restrict #define PETSC_C_INLINE inline #define PETSC_C_RESTRICT __restrict #define PETSC_DEPRECATED_ENUM(why) __attribute((deprecated)) #define PETSC_DEPRECATED_FUNCTION(why) __attribute((deprecated)) #define PETSC_DEPRECATED_MACRO(why) _Pragma(why) #define PETSC_DEPRECATED_TYPEDEF(why) __attribute((deprecated)) #define PETSC_DIR "/Users/jacobfaibussowitsch/NoSync/petscpackages" #define PETSC_DIR_SEPARATOR '/' #define PETSC_DO_NOT_SWAP_CHILD_FOR_DEBUGGER 1 #define PETSC_FORTRAN_CHARLEN_T size_t #define PETSC_FORTRAN_TYPE_INITIALIZE = -2 #define PETSC_FUNCTION_NAME_C __func__ #define PETSC_FUNCTION_NAME_CXX __func__ #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_ATOLL 1 #define PETSC_HAVE_ATTRIBUTEALIGNED 1 #define PETSC_HAVE_BUILTIN_EXPECT 1 #define PETSC_HAVE_BZERO 1 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_HAVE_CHACO 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_CLOSURE 1 #define PETSC_HAVE_CTETGEN 1 #define PETSC_HAVE_CXX 1 #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_HAVE_CXX_DIALECT_CXX11 1 #define PETSC_HAVE_CXX_DIALECT_CXX14 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_DOUBLE_ALIGN_MALLOC 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_HAVE_ERF 1 #define PETSC_HAVE_EXODUSII 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_FENV_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_FORTRAN 1 #define PETSC_HAVE_FORTRAN_FLUSH 1 #define PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT 1 #define PETSC_HAVE_FORTRAN_TYPE_STAR 1 #define PETSC_HAVE_FORTRAN_UNDERSCORE 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_GETWD 1 #define PETSC_HAVE_GMP 1 #define PETSC_HAVE_HDF5 1 #define PETSC_HAVE_IMMINTRIN_H 1 #define PETSC_HAVE_INTTYPES_H 1 #define PETSC_HAVE_ISINF 1 #define PETSC_HAVE_ISNAN 1 #define PETSC_HAVE_ISNORMAL 1 #define PETSC_HAVE_LGAMMA 1 #define PETSC_HAVE_LOG2 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_MACHINE_ENDIAN_H 1 #define PETSC_HAVE_MED 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE_METIS 1 #define PETSC_HAVE_MMAP 1 #define PETSC_HAVE_MPFR 1 #define PETSC_HAVE_MPICH 1 #define PETSC_HAVE_MPICH_NUMVERSION 30302300 #define PETSC_HAVE_MPIEXEC_ENVIRONMENTAL_VARIABLE MPIR_CVAR_CH3 #define PETSC_HAVE_MPIIO 1 #define PETSC_HAVE_MPI_COMBINER_CONTIGUOUS 1 #define PETSC_HAVE_MPI_COMBINER_DUP 1 #define PETSC_HAVE_MPI_COMBINER_NAMED 1 #define PETSC_HAVE_MPI_C_DOUBLE_COMPLEX 1 #define PETSC_HAVE_MPI_EXSCAN 1 #define PETSC_HAVE_MPI_F90MODULE 1 #define PETSC_HAVE_MPI_FINALIZED 1 #define PETSC_HAVE_MPI_GET_ACCUMULATE 1 #define PETSC_HAVE_MPI_GET_LIBRARY_VERSION 1 #define PETSC_HAVE_MPI_IALLREDUCE 1 #define PETSC_HAVE_MPI_IBARRIER 1 #define PETSC_HAVE_MPI_INIT_THREAD 1 #define PETSC_HAVE_MPI_INT64_T 1 #define PETSC_HAVE_MPI_IN_PLACE 1 #define PETSC_HAVE_MPI_LONG_DOUBLE 1 #define PETSC_HAVE_MPI_NEIGHBORHOOD_COLLECTIVES 1 #define PETSC_HAVE_MPI_NONBLOCKING_COLLECTIVES 1 #define PETSC_HAVE_MPI_ONE_SIDED 1 #define PETSC_HAVE_MPI_PROCESS_SHARED_MEMORY 1 #define PETSC_HAVE_MPI_REDUCE_LOCAL 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER_BLOCK 1 #define PETSC_HAVE_MPI_RGET 1 #define PETSC_HAVE_MPI_TYPE_DUP 1 #define PETSC_HAVE_MPI_TYPE_GET_ENVELOPE 1 #define PETSC_HAVE_MPI_WIN_CREATE 1 #define PETSC_HAVE_MUMPS 1 #define PETSC_HAVE_NANOSLEEP 1 #define PETSC_HAVE_NETCDF 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_PARMETIS 1 #define PETSC_HAVE_PNETCDF 1 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_PTHREAD 1 #define PETSC_HAVE_PTHREAD_H 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_REGEX 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_SCALAPACK 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_SOWING 1 #define PETSC_HAVE_SO_REUSEADDR 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_STRUCT_SIGACTION 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_SYS_SYSCTL_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_TRIANGLE 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_USLEEP 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_HAVE_X 1 #define PETSC_HAVE_XMMINTRIN_H 1 #define PETSC_HAVE_ZSTD 1 #define PETSC_HDF5_HAVE_PARALLEL 1 #define PETSC_HDF5_HAVE_ZLIB 1 #define PETSC_IS_COLORING_MAX USHRT_MAX #define PETSC_IS_COLORING_VALUE_TYPE short #define PETSC_IS_COLORING_VALUE_TYPE_F integer2 #define PETSC_LEVEL1_DCACHE_LINESIZE 32 #define PETSC_LIB_DIR "/Users/jacobfaibussowitsch/NoSync/petscpackages/lib" #define PETSC_MAX_PATH_LEN 1024 #define PETSC_MEMALIGN 16 #define PETSC_MPICC_SHOW "clang -fstack-protector -fno-stack-check -Qunused-arguments -g3 -Wno-implicit-function-declaration -Wl,-flat_namespace -Wl,-commons,use_dylibs -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lmpi -lpmpi" #define PETSC_MPIU_IS_COLORING_VALUE_TYPE MPI_UNSIGNED_SHORT #define PETSC_PREFETCH_HINT_NTA _MM_HINT_NTA #define PETSC_PREFETCH_HINT_T0 _MM_HINT_T0 #define PETSC_PREFETCH_HINT_T1 _MM_HINT_T1 #define PETSC_PREFETCH_HINT_T2 _MM_HINT_T2 #define PETSC_PYTHON_EXE "/usr/local/opt/python@3.9/bin/python3.9" #define PETSC_Prefetch(a,b,c) _mm_prefetch((const char*)(a),(c)) #define PETSC_REPLACE_DIR_SEPARATOR '\\' #define PETSC_RTLD_DEFAULT 1 #define PETSC_SIGNAL_CAST #define PETSC_SIZEOF_ENUM 4 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG 8 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_SLSUFFIX "dylib" #define PETSC_UINTPTR_T uintptr_t #define PETSC_UNUSED __attribute((unused)) #define PETSC_USE_AVX512_KERNELS 1 #define PETSC_USE_BACKWARD_LOOP 1 #define PETSC_USE_CTABLE 1 #define PETSC_USE_DEBUG 1 #define PETSC_USE_DEBUGGER "lldb" #define PETSC_USE_INFO 1 #define PETSC_USE_ISATTY 1 #define PETSC_USE_LOG 1 #define PETSC_USE_REAL_DOUBLE 1 #define PETSC_USE_SHARED_LIBRARIES 1 #define PETSC_USE_SINGLE_LIBRARY 1 #define PETSC_USE_SOCKET_VIEWER 1 #define PETSC_USE_VISIBILITY_C 1 #define PETSC_USE_VISIBILITY_CXX 1 #define PETSC_USING_F2003 1 #define PETSC_USING_F90FREEFORM 1 #define PETSC_VERSION_BRANCH_GIT "master" #define PETSC_VERSION_DATE_GIT "2020-12-21 19:21:21 +0000" #define PETSC_VERSION_GIT "v3.14.2-315-ga02893ccf2" #define PETSC__BSD_SOURCE 1 #define PETSC__DEFAULT_SOURCE 1 #endif **** master-arch-darwin-c-debug/include/petscfix.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #if defined(__cplusplus) extern "C" { } #else #endif #endif **** master-arch-darwin-c-debug/include/petscpkg_version.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #define PETSC_PKG_MPI_VERSION_MAJOR 3 #define PETSC_PKG_MPI_VERSION_MINOR 0 #define PETSC_PKG_MPI_VERSION_SUBMINOR 0 #define PETSC_PKG_MPI_VERSION_ PETSC_PKG_MPI_VERSION_EQ #define PETSC_PKG_MPI_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ ((PETSC_PKG_MPI_VERSION_MAJOR == (MAJOR)) && \ (PETSC_PKG_MPI_VERSION_MINOR == (MINOR)) && \ (PETSC_PKG_MPI_VERSION_SUBMINOR == (SUBMINOR))) #define PETSC_PKG_MPI_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_MPI_VERSION_MAJOR < (MAJOR) || \ (PETSC_PKG_MPI_VERSION_MAJOR == (MAJOR) && \ (PETSC_PKG_MPI_VERSION_MINOR < (MINOR) || \ (PETSC_PKG_MPI_VERSION_MINOR == (MINOR) && \ (PETSC_PKG_MPI_VERSION_SUBMINOR < (SUBMINOR)))))) #define PETSC_PKG_MPI_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_MPI_VERSION_LT(MAJOR,MINOR,SUBMINOR) || \ PETSC_PKG_MPI_VERSION_EQ(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_MPI_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_MPI_VERSION_LE(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_MPI_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_MPI_VERSION_LT(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_HDF5_VERSION_MAJOR 1 #define PETSC_PKG_HDF5_VERSION_MINOR 12 #define PETSC_PKG_HDF5_VERSION_SUBMINOR 0 #define PETSC_PKG_HDF5_VERSION_ PETSC_PKG_HDF5_VERSION_EQ #define PETSC_PKG_HDF5_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ ((PETSC_PKG_HDF5_VERSION_MAJOR == (MAJOR)) && \ (PETSC_PKG_HDF5_VERSION_MINOR == (MINOR)) && \ (PETSC_PKG_HDF5_VERSION_SUBMINOR == (SUBMINOR))) #define PETSC_PKG_HDF5_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_HDF5_VERSION_MAJOR < (MAJOR) || \ (PETSC_PKG_HDF5_VERSION_MAJOR == (MAJOR) && \ (PETSC_PKG_HDF5_VERSION_MINOR < (MINOR) || \ (PETSC_PKG_HDF5_VERSION_MINOR == (MINOR) && \ (PETSC_PKG_HDF5_VERSION_SUBMINOR < (SUBMINOR)))))) #define PETSC_PKG_HDF5_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_HDF5_VERSION_LT(MAJOR,MINOR,SUBMINOR) || \ PETSC_PKG_HDF5_VERSION_EQ(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_HDF5_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_HDF5_VERSION_LE(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_HDF5_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_HDF5_VERSION_LT(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_NETCDF_VERSION_MAJOR 4 #define PETSC_PKG_NETCDF_VERSION_MINOR 5 #define PETSC_PKG_NETCDF_VERSION_SUBMINOR 0 #define PETSC_PKG_NETCDF_VERSION_ PETSC_PKG_NETCDF_VERSION_EQ #define PETSC_PKG_NETCDF_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ ((PETSC_PKG_NETCDF_VERSION_MAJOR == (MAJOR)) && \ (PETSC_PKG_NETCDF_VERSION_MINOR == (MINOR)) && \ (PETSC_PKG_NETCDF_VERSION_SUBMINOR == (SUBMINOR))) #define PETSC_PKG_NETCDF_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_NETCDF_VERSION_MAJOR < (MAJOR) || \ (PETSC_PKG_NETCDF_VERSION_MAJOR == (MAJOR) && \ (PETSC_PKG_NETCDF_VERSION_MINOR < (MINOR) || \ (PETSC_PKG_NETCDF_VERSION_MINOR == (MINOR) && \ (PETSC_PKG_NETCDF_VERSION_SUBMINOR < (SUBMINOR)))))) #define PETSC_PKG_NETCDF_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_NETCDF_VERSION_LT(MAJOR,MINOR,SUBMINOR) || \ PETSC_PKG_NETCDF_VERSION_EQ(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_NETCDF_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_NETCDF_VERSION_LE(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_NETCDF_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_NETCDF_VERSION_LT(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_PNETCDF_VERSION_MAJOR 1 #define PETSC_PKG_PNETCDF_VERSION_MINOR 12 #define PETSC_PKG_PNETCDF_VERSION_SUBMINOR 1 #define PETSC_PKG_PNETCDF_VERSION_ PETSC_PKG_PNETCDF_VERSION_EQ #define PETSC_PKG_PNETCDF_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ ((PETSC_PKG_PNETCDF_VERSION_MAJOR == (MAJOR)) && \ (PETSC_PKG_PNETCDF_VERSION_MINOR == (MINOR)) && \ (PETSC_PKG_PNETCDF_VERSION_SUBMINOR == (SUBMINOR))) #define PETSC_PKG_PNETCDF_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_PNETCDF_VERSION_MAJOR < (MAJOR) || \ (PETSC_PKG_PNETCDF_VERSION_MAJOR == (MAJOR) && \ (PETSC_PKG_PNETCDF_VERSION_MINOR < (MINOR) || \ (PETSC_PKG_PNETCDF_VERSION_MINOR == (MINOR) && \ (PETSC_PKG_PNETCDF_VERSION_SUBMINOR < (SUBMINOR)))))) #define PETSC_PKG_PNETCDF_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_PNETCDF_VERSION_LT(MAJOR,MINOR,SUBMINOR) || \ PETSC_PKG_PNETCDF_VERSION_EQ(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_PNETCDF_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_PNETCDF_VERSION_LE(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_PNETCDF_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_PNETCDF_VERSION_LT(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_METIS_VERSION_MAJOR 5 #define PETSC_PKG_METIS_VERSION_MINOR 1 #define PETSC_PKG_METIS_VERSION_SUBMINOR 0 #define PETSC_PKG_METIS_VERSION_ PETSC_PKG_METIS_VERSION_EQ #define PETSC_PKG_METIS_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ ((PETSC_PKG_METIS_VERSION_MAJOR == (MAJOR)) && \ (PETSC_PKG_METIS_VERSION_MINOR == (MINOR)) && \ (PETSC_PKG_METIS_VERSION_SUBMINOR == (SUBMINOR))) #define PETSC_PKG_METIS_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_METIS_VERSION_MAJOR < (MAJOR) || \ (PETSC_PKG_METIS_VERSION_MAJOR == (MAJOR) && \ (PETSC_PKG_METIS_VERSION_MINOR < (MINOR) || \ (PETSC_PKG_METIS_VERSION_MINOR == (MINOR) && \ (PETSC_PKG_METIS_VERSION_SUBMINOR < (SUBMINOR)))))) #define PETSC_PKG_METIS_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_METIS_VERSION_LT(MAJOR,MINOR,SUBMINOR) || \ PETSC_PKG_METIS_VERSION_EQ(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_METIS_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_METIS_VERSION_LE(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_METIS_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_METIS_VERSION_LT(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_PARMETIS_VERSION_MAJOR 4 #define PETSC_PKG_PARMETIS_VERSION_MINOR 0 #define PETSC_PKG_PARMETIS_VERSION_SUBMINOR 3 #define PETSC_PKG_PARMETIS_VERSION_ PETSC_PKG_PARMETIS_VERSION_EQ #define PETSC_PKG_PARMETIS_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ ((PETSC_PKG_PARMETIS_VERSION_MAJOR == (MAJOR)) && \ (PETSC_PKG_PARMETIS_VERSION_MINOR == (MINOR)) && \ (PETSC_PKG_PARMETIS_VERSION_SUBMINOR == (SUBMINOR))) #define PETSC_PKG_PARMETIS_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_PARMETIS_VERSION_MAJOR < (MAJOR) || \ (PETSC_PKG_PARMETIS_VERSION_MAJOR == (MAJOR) && \ (PETSC_PKG_PARMETIS_VERSION_MINOR < (MINOR) || \ (PETSC_PKG_PARMETIS_VERSION_MINOR == (MINOR) && \ (PETSC_PKG_PARMETIS_VERSION_SUBMINOR < (SUBMINOR)))))) #define PETSC_PKG_PARMETIS_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_PARMETIS_VERSION_LT(MAJOR,MINOR,SUBMINOR) || \ PETSC_PKG_PARMETIS_VERSION_EQ(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_PARMETIS_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_PARMETIS_VERSION_LE(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_PARMETIS_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_PARMETIS_VERSION_LT(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_MUMPS_VERSION_MAJOR 5 #define PETSC_PKG_MUMPS_VERSION_MINOR 2 #define PETSC_PKG_MUMPS_VERSION_SUBMINOR 1 #define PETSC_PKG_MUMPS_VERSION_ PETSC_PKG_MUMPS_VERSION_EQ #define PETSC_PKG_MUMPS_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ ((PETSC_PKG_MUMPS_VERSION_MAJOR == (MAJOR)) && \ (PETSC_PKG_MUMPS_VERSION_MINOR == (MINOR)) && \ (PETSC_PKG_MUMPS_VERSION_SUBMINOR == (SUBMINOR))) #define PETSC_PKG_MUMPS_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_MUMPS_VERSION_MAJOR < (MAJOR) || \ (PETSC_PKG_MUMPS_VERSION_MAJOR == (MAJOR) && \ (PETSC_PKG_MUMPS_VERSION_MINOR < (MINOR) || \ (PETSC_PKG_MUMPS_VERSION_MINOR == (MINOR) && \ (PETSC_PKG_MUMPS_VERSION_SUBMINOR < (SUBMINOR)))))) #define PETSC_PKG_MUMPS_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ (PETSC_PKG_MUMPS_VERSION_LT(MAJOR,MINOR,SUBMINOR) || \ PETSC_PKG_MUMPS_VERSION_EQ(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_MUMPS_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_MUMPS_VERSION_LE(MAJOR,MINOR,SUBMINOR)) #define PETSC_PKG_MUMPS_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ ( 0 == PETSC_PKG_MUMPS_VERSION_LT(MAJOR,MINOR,SUBMINOR)) #endif Attempting to save configure hash file: master-arch-darwin-c-debug/lib/petsc/conf/configure-hash Saved configure hash file: master-arch-darwin-c-debug/lib/petsc/conf/configure-hash Configure Actions These are the actions performed by configure on the filesystem ----------------------------------------------------------------- PETSc: File creation : Generated Fortran stubs Build : Set default architecture to master-arch-darwin-c-debug in lib/petsc/conf/petscvariables File creation : Created master-arch-darwin-c-debug/lib/petsc/conf/reconfigure-master-arch-darwin-c-debug.py for automatic reconfiguration Framework: RDict update : Substitutions were stored in RDict with parent None File creation : Created makefile configure header master-arch-darwin-c-debug/lib/petsc/conf/petscvariables File creation : Created makefile configure header master-arch-darwin-c-debug/lib/petsc/conf/petscrules File creation : Created configure header master-arch-darwin-c-debug/include/petscconf.h File creation : Created C specific configure header master-arch-darwin-c-debug/include/petscfix.h File creation : Created configure pkg header master-arch-darwin-c-debug/include/petscpkg_version.h File creation : Created makefile configure header master-arch-darwin-c-debug/lib/petsc/conf/petscvariables File creation : Created makefile configure header master-arch-darwin-c-debug/lib/petsc/conf/petscrules File creation : Created configure header master-arch-darwin-c-debug/include/petscconf.h File creation : Created C specific configure header master-arch-darwin-c-debug/include/petscfix.h File creation : Created configure pkg header master-arch-darwin-c-debug/include/petscpkg_version.h Compilers: C Compiler: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 Version: Apple clang version 12.0.0 (clang-1200.0.32.28) C++ Compiler: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicxx -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g Version: Apple clang version 12.0.0 (clang-1200.0.32.28) Fortran Compiler: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpif90 -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g Version: GNU Fortran (GCC) 10.2.0 Linkers: Shared linker: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 Dynamic linker: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpicc -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g3 Libraries linked against: -lc++ -ldl BlasLapack: Library: -llapack -lblas Unknown if this uses OpenMP (try export OMP_NUM_THREADS=<1-4> yourprogram -log_view) uses 4 byte integers MPI: Version: 3 Includes: -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include Mpiexec: /Users/jacobfaibussowitsch/NoSync/petscpackages/bin/mpiexec MPICH_NUMVERSION: 30302300 MPICH: pthread: X: Includes: -I/opt/X11/include Library: -Wl,-rpath,/opt/X11/lib -L/opt/X11/lib -lX11 zlib: Includes: -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include Library: -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lz hdf5: Version: 1.12.0 Includes: -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include Library: -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 netcdf: Version: 4.5.0 Includes: -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include Library: -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lnetcdf pnetcdf: Version: 1.12.1 Includes: -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include Library: -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lpnetcdf cmake: Version: 3.19.2 /usr/local/bin/cmake Chaco: Library: -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lchaco metis: Version: 5.1.0 Includes: -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include Library: -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lmetis parmetis: Version: 4.0.3 Includes: -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include Library: -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lparmetis regex: MUMPS: Version: 5.2.1 Includes: -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include Library: -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lcmumps -ldmumps -lsmumps -lzmumps -lmumps_common -lpord scalapack: Library: -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lscalapack Triangle: Includes: -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include Library: -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -ltriangle exodusii: Includes: -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include Library: -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lexodus ctetgen: Includes: -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include Library: -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lctetgen gmp: Library: -lgmp med: Includes: -I/Users/jacobfaibussowitsch/NoSync/petscpackages/include Library: -Wl,-rpath,/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -L/Users/jacobfaibussowitsch/NoSync/petscpackages/lib -lmedC -lmed mpfr: Library: -lmpfr sowing: Version: 1.1.26 /Users/jacobfaibussowitsch/NoSync/petsc/master-arch-darwin-c-debug/bin/bfort zstd: Version: 1.4.4 Library: -lzstd Language used to compile PETSc: C PETSc: PETSC_ARCH: master-arch-darwin-c-debug PETSC_DIR: /Users/jacobfaibussowitsch/NoSync/petsc Prefix: /Users/jacobfaibussowitsch/NoSync/petscpackages Scalar type: real Precision: double Integer size: 4 bytes Single library: yes Shared libraries: yes Memory alignment from malloc(): 16 bytes Using GNU make: /usr/local/bin/gmake xxx=========================================================================xxx Configure stage complete. Now build PETSc libraries with: make PETSC_DIR=/Users/jacobfaibussowitsch/NoSync/petsc PETSC_ARCH=master-arch-darwin-c-debug all xxx=========================================================================xxx ================================================================================ Finishing configure run at Mon, 21 Dec 2020 15:03:44 -0600 ================================================================================