Executing: uname -s stdout: Linux ================================================================================ ================================================================================ Starting configure run at Sun, 13 Dec 2020 11:09:52 -0800 Configure Options: --configModules=PETSc.Configure --optionsModule=config.compilerOptions --with-cuda --with-debugging=1 PETSC_ARCH=arch-linux-c-debug --force --with-cc=mpicc --with-cxx=mpiCC --with-fc=mpifort Working directory: /g/g15/faibuss/petsc Machine platform: uname_result(system='Linux', node='lassen708', release='4.14.0-115.21.2.1chaos.ch6a.ppc64le', version='#1 SMP Fri May 22 11:01:06 PDT 2020', machine='ppc64le', processor='ppc64le') Python version: 3.8.2 (default, Apr 22 2020, 22:20:55) [GCC 4.9.3] ================================================================================ Environmental variables 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INPUTRC=/etc/inputrc PWD=/g/g15/faibuss/petsc _LMFILES_=/usr/tcetmp/modulefiles/Core/StdEnv.lua:/usr/tcetmp/modulefiles/Core/xl/2020.11.12-cuda-11.1.1.lua:/usr/tce/modulefiles/Compiler/xl/2020.11.12-cuda-11.1.1/spectrum-mpi/rolling-release.lua:/usr/tcetmp/modulefiles/Core/cuda/11.1.1.lua:/usr/tcetmp/modulefiles/Core/python/3.8.2.lua:/usr/tcetmp/modulefiles/Core/cmake/3.14.5.lua:/usr/tcetmp/modulefiles/Core/valgrind/3.16.1.lua:/usr/tcetmp/modulefiles/Core/lapack/3.9.0-xl-2020.11.12.lua EDITOR=emacs LANG=en_US.UTF-8 MODULEPATH=/g/g15/faibuss/spack/share/spack/modules/linux-rhel7-power8le:/usr/tce/modulefiles/MPI/xl/2020.11.12-cuda-11.1.1/spectrum-mpi/rolling-release:/usr/tce/modulefiles/Compiler/xl/2020.11.12-cuda-11.1.1:/usr/tcetmp/modulefiles/Core:/usr/apps/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core:/collab/usr/global/tools/modulefiles/blueos_3_ppc64le_ib_p9/Core _ModuleTable_Sz_=6 LOADEDMODULES=StdEnv:xl/2020.11.12-cuda-11.1.1:spectrum-mpi/rolling-release:cuda/11.1.1:python/3.8.2:cmake/3.14.5:valgrind/3.16.1:lapack/3.9.0-xl-2020.11.12 KDEDIRS=/usr GUESTFISH_OUTPUT=\e[0m LAPACK_INC=/usr/tcetmp/packages/lapack/lapack-3.9.0-xl-2020.11.12/include PS1=[linux-c-debug]\[\][\[\]LSN\[(B\]\[\]]\[(B\]\[\033[36m\]$(parse_git_branch)\[\033[m\]@\[\033[33;1m\]\w\[\033[m\]$ _ModuleTable005_=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 LMOD_CMD=/usr/share/lmod/lmod/libexec/lmod 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__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/tcetmp/packages/lapack/lapack-3.9.0-xl-2020.11.12/lib:1;/usr/tce/packages/python/python-3.8.2/lib:1;/usr/tce/packages/cuda/cuda-11.1.1/lib64:1;/opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/lib:1 LMOD_SETTARG_FULL_SUPPORT=no LESSOPEN=||/usr/bin/lesspipe.sh %s PROMPT_COMMAND=prompt_command ACLOCAL_PATH=/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/share/aclocal LMOD_FAMILY_COMPILER=xl LMOD_FULL_SETTARG_SUPPORT=no CMAKE_PREFIX_PATH=/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3:/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj:/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge:/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t:/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/zlib-1.2.11-ihbbjg5iizrwf3lssqnrmlcor5ukl336:/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b:/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou:/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g __LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/tce/packages/valgrind/valgrind-3.16.1/lib/pkgconfig:1 QT_PLUGIN_PATH=/usr/lib64/kde4/plugins:/usr/lib/kde4/plugins INCLUDE=/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/include:/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/include:/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/include:/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/include:/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/zlib-1.2.11-ihbbjg5iizrwf3lssqnrmlcor5ukl336/include:/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/include:/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/include:/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/include _ModuleTable006_=ZSIsIi91c3IvYXBwcy9tb2R1bGVmaWxlcyIsIi91c3Ivc2hhcmUvbW9kdWxlZmlsZXMvTGludXgiLCIvdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmUiLCIvdXNyL3NoYXJlL2xtb2QvbG1vZC9tb2R1bGVmaWxlcy9Db3JlIiwiL2NvbGxhYi91c3IvZ2xvYmFsL3Rvb2xzL21vZHVsZWZpbGVzL2JsdWVvc18zX3BwYzY0bGVfaWJfcDkvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvdXNyL3RjZXRtcC9tb2R1bGVmaWxlcy9Db3JlOi91c3IvYXBwcy9tb2R1bGVmaWxlczovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0xpbnV4Oi91c3Ivc2hhcmUvbW9kdWxlZmlsZXMvQ29yZTovdXNyL3NoYXJlL2xtb2QvbG1vZC9tb2R1bGVmaWxlcy9Db3JlIix9 __LMOD_REF_COUNT_MANPATH=/usr/tce/packages/cmake/cmake-3.14.5/share/man:1;/usr/tce/packages/python/python-3.8.2/share/man:1;/usr/tce/packages/cuda/cuda-11.1.1/doc/man:1;/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/share/man:1;/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlf/16.1.1/man/en_US:1;/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlC/16.1.1/man/en_US:1;/usr/tcetmp/man:1;/usr/tce/man:1;/usr/share/lmod/lmod/share/man:1;/opt/ibm/spectrumcomputing/lsf/10.1.0.9/man:1;/usr/man:1;/usr/share/man:1;/usr/local/man:1;/usr/X11R6/man:1;/usr/lib64/mvapich/default/man:1;/opt/ibm/spectrum_mpi/jsm_pmix/share/man:1 LMOD_DIR=/usr/share/lmod/lmod/libexec LSF_ENVDIR=/opt/ibm/spectrumcomputing/lsf/conf PETSC_DIR=/g/g15/faibuss/petsc GUESTFISH_RESTORE=\e[0m LMOD_FAMILY_MPI=spectrum-mpi LMOD_COLORIZE=yes HISTFILE=/g/g15/faibuss/.bash_history BASH_FUNC__spack_shell_wrapper()=() { for var in LD_LIBRARY_PATH DYLD_LIBRARY_PATH DYLD_FALLBACK_LIBRARY_PATH; do eval "if [ -n \"\${${var}-}\" ]; then export SPACK_$var=\${${var}}; fi"; done; if [ -n "${ZSH_VERSION:-}" ]; then emulate -L sh; fi; _sp_flags=""; while [ ! -z ${1+x} ] && [ "${1#-}" != "${1}" ]; do _sp_flags="$_sp_flags $1"; shift; done; if [ -n "$_sp_flags" ] && [ "${_sp_flags#*h}" != "${_sp_flags}" ] || [ "${_sp_flags#*V}" != "${_sp_flags}" ]; then command spack $_sp_flags "$@"; return; fi; _sp_subcommand=""; if [ ! -z ${1+x} ]; then _sp_subcommand="$1"; shift; fi; case $_sp_subcommand in "cd") _sp_arg=""; if [ -n "$1" ]; then _sp_arg="$1"; shift; fi; if [ "$_sp_arg" = "-h" ] || [ "$_sp_arg" = "--help" ]; then command spack cd -h; else LOC="$(spack location $_sp_arg "$@")"; if [ -d "$LOC" ]; then cd "$LOC"; else return 1; fi; fi; return ;; "env") _sp_arg=""; if [ -n "$1" ]; then _sp_arg="$1"; shift; fi; if [ "$_sp_arg" = "-h" ] || [ "$_sp_arg" = "--help" ]; then command spack env -h; else case $_sp_arg in activate) _a=" $@"; if [ -z ${1+x} ] || [ "${_a#* --sh}" != "$_a" ] || [ "${_a#* --csh}" != "$_a" ] || [ "${_a#* -h}" != "$_a" ] || [ "${_a#* --help}" != "$_a" ]; then command spack env activate "$@"; else eval $(command spack $_sp_flags env activate --sh "$@"); fi ;; deactivate) _a=" $@"; if [ "${_a#* --sh}" != "$_a" ] || [ "${_a#* --csh}" != "$_a" ]; then command spack env deactivate "$@"; else if [ -n "$*" ]; then command spack env deactivate -h; else eval $(command spack $_sp_flags env deactivate --sh); fi; fi ;; *) command spack env $_sp_arg "$@" ;; esac; fi; return ;; "load" | "unload") _a=" $@"; if [ "${_a#* --sh}" != "$_a" ] || [ "${_a#* --csh}" != "$_a" ] || [ "${_a#* -h}" != "$_a" ] || [ "${_a#* --help}" != "$_a" ]; then command spack $_sp_flags $_sp_subcommand "$@"; else eval $(command spack $_sp_flags $_sp_subcommand --sh "$@" || echo "return 1"); fi ;; *) command spack $_sp_flags $_sp_subcommand "$@" ;; esac } BASH_FUNC_module()=() { eval $($LMOD_CMD bash "$@") && eval $(${LMOD_SETTARG_CMD:-:} -s sh) } BASH_FUNC_spack()=() { : this is a shell function from: /g/g15/faibuss/spack/share/spack/setup-env.sh; : the real spack script is here: /g/g15/faibuss/spack/bin/spack; _spack_shell_wrapper "$@"; return $? } BASH_FUNC_ml()=() { eval $($LMOD_DIR/ml_cmd "$@") } _=./reconfigure-arch-linux-c-debug.py Files in path provided by default path /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/bin: etags ctags emacsclient ebrowse emacs-27.1 emacs /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/bin: pcre-config pcretest pcregrep /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/bin: tic toe infotocap captoinfo infocmp clear tabs tput tset reset ncurses6-config ncursesw6-config /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/bin: xml2-config xmllint xmlcatalog 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python python-config meson pybabel f2py f2py3 f2py3.8 easy_install easy_install-3.8 black blackd bokeh rst2html.py rst2html4.py rst2html5.py rst2s5.py rst2latex.py rst2xetex.py rst2man.py rst2xml.py rst2pseudoxml.py rstpep2html.py rst2odt.py rst2odt_prepstyles.py jp.py chardetect coverage coverage-3.8 coverage3 cygdb cython cythonize dask-ssh dask-scheduler dask-worker undill get_objgraph epydoc epydocgui apirst2html.py pycodestyle pyflakes flake8 imageio_download_bin imageio_remove_bin isort jsonschema theano-cache theano-nose lit mypyc dmypy mypy stubgen nc3tonc4 nc4tonc3 ncinfo nosetests nosetests-3.8 pip pip3 pip3.8 pygmentize pylint symilar epylint pyreverse py.test pytest sphinx-apidoc sphinx-autogen sphinx-build sphinx-quickstart isympy virtualenv wheel xdot skivi colorcet pbr bandit bandit-baseline bandit-config-generator run_python_with_conduit.sh conduit_relay_node_viewer conduit_relay_io_ls conduit_relay_io_convert conduit_relay_entangle.py conduit_blueprint_verify conduit_staging conduit_staging.json conduit_staging.sh futurize pasteurize markdown_py tqdm panel holoviews gdal_proximity.py gdalinfo gdalserver gdal_translate gdaladdo gdalwarp nearblack gdalmanage gdalenhance gdaltransform gdaldem gdallocationinfo gdalsrsinfo gdal_contour gdaltindex gdal_rasterize gdal_grid ogrinfo ogr2ogr ogrtindex ogrlineref testepsg gdalbuildvrt gdal-config gdalchksum.py pct2rgb.py gdal_sieve.py esri2wkt.py gdalcompare.py mkgraticule.py gdalident.py gdalmove.py rgb2pct.py gdal_merge.py gdal2xyz.py gdal_auth.py gdal_calc.py gdal_edit.py ogrmerge.py gdal_pansharpen.py gdal_polygonize.py gcps2vec.py epsg_tr.py gdal_retile.py gdal2tiles.py gdal_fillnodata.py gcps2wld.py gdalimport.py geos-config runxlrd.py __pycache__ iptest iptest3 ipython ipython3 /usr/tce/packages/cuda/cuda-11.1.1/bin: bin2c compute-sanitizer computeprof crt cuda-gdb cuda-gdbserver cuda-install-samples-11.1.sh cuda-memcheck cudafe++ cuobjdump fatbinary ncu nsight-sys nsight_ee_plugins_manage.sh nsys nsys-exporter nsys-ui nv-nsight-cu-cli nvcc nvcc.profile nvdisasm nvlink nvprof nvprune nvvp ptxas /usr/tce/packages/spectrum-mpi/spectrum-mpi-rolling-release-xl-2020.11.12-cuda-11.1.1/bin: alias.pl efix jumpshot mpiCC mpiCC-gpu mpic++ mpic++-gpu mpicc mpicc-gpu mpicxx mpicxx-gpu mpiexec mpif2003 oshc++ mpif2003-gpu mpif2008 oshcxx mpif2008-gpu mpif77 mpif77-gpu mpif90 mpif90-gpu mpif95 mpif95-gpu mpifort mpifort-gpu mpijob mpirun mpitool mpixlC mpixlC-gpu mpixlc mpixlc-gpu mpixlcuf oshrun mpixlcuf-gpu mpixlf mpixlf-gpu mpixlf2003 oshmem_info mpixlf2003-gpu mpixlf2008 shmemCC mpixlf2008-gpu mpixlf90 mpixlf90-gpu mpixlf95 shmemc++ mpixlf95-gpu ompi-clean ompi-dvm ompi-ps ompi-server ompi-top ompi_info shmemcxx opal_wrapper orte-clean orte-dvm orte-info orte-ps orte-server orte-top ortecc orted orterun oshCC /usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/bin: c89 c89_r c99 c99_r f2003 f2008 f77 f90 f95 fort77 xlC xlC-gpu xlC_r xlC_r-gpu xlc xlc++ xlc++-gpu xlc++_r xlc++_r-gpu 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git-upload-pack python2.7 python3.6 mpixlf90 lrun.TVD.v4breakpoints .newlalloc.swp pvserver_parallel ltreereport build_libcache nsys print_openmp_mapping_gcc find_slow_links memcheck memcheck_all memcheckview valgrind newlalloc oldlalloc lexec lalloc hopper print_openmp_mapping_pgi stat-gui-sw git-lfs setup_ssh_keys lrun.TVD.v4breakpoints~ bhistdata nv-nsight-cu-cli mpixlf95 git-receive-pack dun25 nvidia_helper mpixlf2003-gpu shm_rm_keilbart lacct.py pvbatch pvpython pvserver lshare detect_ats print_openmp_mapping_xl clean_up_keilbart patchelf gnuplot python2-2.7.16 python-2.7.16 python3-3.7.2 lacct lreport jsrun vmd vmd_mesa vmd_mono vmd_stereo glxgears gracebat xmgrace attach-helper lcvisdiag bsub_job_starter.2019_11_15 test_sierra_node mpixlf2008 jsrun.TVD.v4breakpoints newbsub oldbsub gmt rasmol cmake ccmake cpack ctest cmake-gui mpirun_check_llnl srun lbf bsub_job_starter mpixlf2008-gpu gitk git-cvsserver jsrun.TVD.v4breakpoints~ bsub_job_starter.2019_06_26 srun.TVD.v4breakpoints llaunch mpixlf90-gpu git git-shell __pycache__ pvdataserver pvrenderserver lhostlist ipisolate_user_list mpixlf2003 mpixlf95-gpu git-upload-archive /usr/lib64/qt-3.3/bin: assistant findtr linguist lrelease lupdate moc qembed qm2ts qmake qt20fix qtrename140 uic designer /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc: esub.bscfs epsub.bscfs bb_pre_exec.sh bb_post_exec.sh elim.gpfsglobal elim.gpfshost esub.coreiso esub.outfile esub.usergroup esub.ipisolate eauth eauth.krb5 esub.bproc esub.dprov esub.fluent esub.gold esub.intelmpi esub.lammpi esub.ls_dyna esub.mpich2 esub.mpich_gm esub.mpich_mx esub.mpichp4 esub.mvapich esub.oldpoe esub.oldtvpoe esub.openmp esub.openmpi esub.poe esub.pvm esub.tv esub.tvlammpi esub.tvmpich_gm esub.tvpoe mesub named nios elim.frequency elim.jsdl lim lsf_daemons melim pim res rla sbatchd tmp.elim.sa eadmin ebrokerd mbatchd mbschd esub.bb epsub.bb /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin: lsclusters bacct lseligible badmin lslockhost bapp lsloadadj bbot lslogin bchkpnt lsltasks bclusters lsmail bconf lsmake bentags lsmake4 bgadd lsmakerm bgbroker lsmon bgdel lspasswd bgmod lsplace bgpinfo lsportcheck bhist lsrcp bhosts lsreconfig bhpart lsreghost bimages lsrtasks bjdepinfo lsrun bjgroup lsrun.sh bjobs bkill lsunlockhost blaunch xagent blimits bmg bmgroup bmig bmod bmodify bparams bpeek bpost bqc bqueues bread breboot breconfig brequeue bresize bresources brestart bresume brlainfo brsvadd brsvdel brsvjob brsvmod brsvs brsvsub brun bsla bslots bstatus bstop bsub bswitch btop bugroup busers bwait lsfstartup lammpirun_wrapper lsacct lsacctmrg lsadmin lsf-spark-shell.sh lsgrun lsf-spark-submit.sh lshosts lsf-start-spark.sh lsid lsf-stop-spark.sh lsinfo lsfhadoop.sh lsfrestart lsfrsv lsfshutdown lsload Warning accessing /usr/condabin gives errors: [Errno 2] No such file or directory: '/usr/condabin' /usr/local/bin: /usr/bin: gtroff catchsegv gtbl last gencat neqn mesg getent nroff iconv nl-neigh-add ldd elfedit locale embedspu localedef gprof makedb nm wall pldd objcopy rpcgen objdump sotruss ranlib sprof readelf tzselect size lz4 getconf strings alias strip bash idn lz4c bashbug ld less bashbug-64 nl-route-add bg nl-route-get cd ld.bfd command nl-rule-list fc nl-util-addr fg file gtar getopts testgdbm jobs pod2man read nl-class-add sh pod2text umask perldoc unalias piconv wait pod2usage info a2p tar infokey nl-cls-add sed find2perl xmlcatalog h2ph ex xmllint pl2pm egrep pod2html fgrep splain grep idiag-socket-details sqlite3 nl-cls-list awk c2ph rvi dgawk pstruct gawk perl vi igawk perl5.16.3 pgawk perlbug xmlwf perlthanks gpg-error psed view which s2p bc cpio nl-link-list lua nf-ct-add luac nf-ct-list find nf-exp-add oldfind nf-exp-delete xargs nl-qdisc-add cmp nf-exp-list diff nf-log diff3 nf-monitor sdiff p11-kit eqn nf-queue geqn nl-addr-add gneqn nl-addr-delete gnroff nl-addr-list gpic nl-fib-lookup groff nl-link-enslave grops nl-link-ifindex2name grotty nl-link-name2ifindex gsoelim pic c++filt dc post-grohtml nl-link-release pre-grohtml nl-link-set preconv nl-link-stats soelim unxz tbl nl-list-caches troff nl-list-sockets zsoelim nl-monitor addr2line xzcat ar xzcmp as xzdec xz make nl-neigh-delete nl-neigh-list nl-neightbl-list nl-route-delete nl-route-list nl-tctree-list genl-ctrl-list nl-class-delete nl-class-list nl-classid-lookup nl-cls-delete nl-pktloc-lookup nl-qdisc-delete nl-qdisc-list cksum xzdiff comm shuf xzegrep cp sort xzfgrep csplit xzgrep cut stat xzless date stty xzmore dd sum lastb df sync lz4cat dir tac unlz4 dircolors whiptail update-ca-trust dnsdomainname dirname domainname du tail hostname [ readlink nisdomainname arch realpath ypdomainname base64 tee iptables-xml echo test teamnl env tr lessecho expand lesskey expr true lesspipe.sh factor keyctl false xsltproc fmt tty chacl fold uniq getfacl groups setfacl head vdir rview hostid db_archive basename wc db_checkpoint id who db_deadlock install db_dump join yes db_dump185 cat rm db_hotbackup link gzip db_load chcon zcat db_log_verify ln zcmp db_printlog logname db_recover chgrp znew db_replicate ls gio db_stat md5sum db_tuner mkdir db_upgrade mkfifo db_verify mknod pinentry chmod curl pinentry-curses mktemp gmake mv rpm geoiplookup chown gpg geoiplookup6 nice gpg2 geoipupdate nl gpgv captoinfo nohup clear nproc infocmp numfmt infotocap od yum reset paste tabs rmdir tic runcon toe pathchk tput pinky tset pr sg gr2fonttest printenv ndptool printf lsscsi ptx free trust pwd pmap ca-legacy sha1sum seq fipscheck sha224sum fipshmac sha256sum aserver sha384sum setup-nsssysinit sha512sum setup-nsssysinit.sh shred certutil sleep cmsutil split crlutil stdbuf modutil timeout pk12util touch mailq truncate signver tsort ssltap uname rpm2cpio unexpand rpmdb unlink rpmkeys users rpmquery whoami rpmverify pydoc lchfn python lchsh python2 gpg-agent python2.7 gpg-connect-agent gunzip gpg-zip gzexe gpgconf zdiff gpgparsemail zegrep gpgsplit zfgrep gpgv2 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logger login lsblk lscpu lsipc lslocks lslogins lsmem mcookie mount mountpoint namei nsenter ppc32 ppc64 prlimit rename renice script secon setarch linux-boot-prober setpriv os-prober setsid grub2-file setterm grub2-menulst2cfg tailf grub2-mkrelpath taskset grub2-script-check umount run-parts unshare crontab utmpdump dbus-binding-tool uuidgen consolehelper wdctl ssh-keygen whereis distro_version write repquota dracut nvidia-init lsinitrd gst-launch-1.0 mkinitrd grub2-fstest bootctl news m4 busctl secret-tool coredumpctl grub2-glue-efi hostnamectl grub2-kbdcomp journalctl dbus-uuidgen open kernel-install grub2-mkfont localectl grub2-mkimage loginctl grub2-mklayout machinectl grub2-mknetdir systemctl systemd-sysv-convert systemd-analyze dbus-send pango-view systemd-ask-password grub2-mkrescue systemd-cat pkaction scp systemd-cgls pkcheck sftp systemd-cgtop pkexec ssh systemd-coredumpctl pkttyagent tmon systemd-delta pkla-admin-identities systemd-detect-virt pkla-check-authorization systemd-escape ping nm-online systemd-firstboot ping6 man systemd-hwdb tracepath sudo systemd-inhibit tracepath6 wget systemd-loginctl dbus-update-activation-environment systemd-machine-id-setup ipcalc mrcp systemd-notify usleep mrsh systemd-nspawn grub2-editenv systemd-path grub2-mkstandalone systemd-run dbus-test-tool pdcp systemd-stdio-bridge grub2-mkpasswd-pbkdf2 systemd-tmpfiles dbus-cleanup-sockets nmcli systemd-tty-ask-password-agent grub2-syslinux2cfg timedatectl quota udevadm gst-inspect-1.0 dbus-daemon rhsm-debug rct hdsploader mixartloader usx2yloader vxloader bond2team teamd teamdctl gtk-query-immodules-2.0-64 update-gtk-immodules pygtk-demo amsvis amsstat plymouth rhn_register desktop-file-edit desktop-file-install desktop-file-validate update-desktop-database xdg-desktop-icon xdg-desktop-menu xdg-email xdg-icon-resource xdg-mime xdg-open xdg-screensaver xdg-settings lsattr rhsmcertd chronyc sg_requests subscription-manager rescan-scsi-bus.sh dumpkeys scsi-rescan kbd_mode scsi_logging_level loadkeys scsi_mandat setfont apropos pdsh unicode_start catman inst unicode_stop scsi_readcap deallocvt scsi_ready fgconsole scsi_satl getkeycodes scsi_start kbdinfo scsi_stop kbdrate scsi_temperature loadunimap sg_copy_results mapscrn sg_emc_trespass openvt sg_dd psfaddtable sg_decode_sense psfgettable lexgrog rcp psfstriptable sg_get_lba_status psfxtable sg_format setkeycodes sg_get_config setleds sg_inq setmetamode sg_ident setvtrgb manpath rsh showconsolefont sg_logs showkey sg_luns vlock sg_map anaconda-cleanup mandb GET firewall-cmd netstat sg_reset firewall-offline-cmd sg_map26 ntpstat sg_modes nmtui whatis HEAD nmtui-connect sg_opcodes nmtui-edit redhat-support-tool nmtui-hostname sg_persist slogin sg_prevent ssh-add sg_raw ssh-agent sg_rbuf ssh-copy-id sg_rdac ssh-keyscan sg_read agentxtrap sg_compare_and_write net-snmp-config rsyslog-recover-qi.pl net-snmp-create-v3-user sg_read_buffer snmpconf sudoedit POST mailq.postfix sudoreplay cpp newaliases.postfix chattr c89 rmail.postfix newaliases rmail java sg_read_block_limits aulast sg_read_long aulastlog sg_reassign ausyscall sg_readcap auvirt sg_sat_identify rsync sg_referrals cpupower sg_rmsn sg_rtpg sg_safte sg_sanitize gcc-ranlib zip sg_sat_phy_event gcc-nm isql sg_sat_set_features satyr sg_scan notify-send sg_senddiag kpseaccess sg_ses kpsereadlink sg_start kpsestat sg_stpg kpsewhich sg_sync gcov gvfs-open sg_test_rwbuf mkocp sg_turs mkofm sg_unmap mktexfmt sg_verify mktexlsr sg_vpd mktexmf sg_wr_mode gcc gvfs-rename sg_write_buffer gfortran irw sg_write_long ppc64le-redhat-linux-gcc sg_write_same mktexpk sg_xcopy mktextfm sginfo texhash sgm_dd allcm sgp_dd allneeded allec nodeattr dvi2fax munge dvired remunge fmtutil unmunge fmtutil-sys mrlogin kpsepath dshbak kpsetool rpdcp kpsewhere oldrdist kpsexpand rdist texconfig-sys rdistd texconfig-dialog dist2 updmap dist_all f95 gvfs-rm dist_bootstrap texlinks dist_cmp updmap-sys dist_local libtar rlogin pydoc3.4 db4_archive wish gvfs-save 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checkmodule ttmkfdir checkpolicy json_pp sedismod gif2h5 sedispol h52gif glxgears h5copy glxinfo h5debug glxinfo64 h5diff xdriinfo prezip dot etags.xemacs h5dump ootags prezip-bin fdp xemacs-script keytool ed2k-link gost-hash rhash h5import git-receive-pack git-upload-archive h5jam git-shell run-with-aspell git-upload-pack h5mkgrp docker spell gc docker-containerd whatsup h5cc-32 docker-containerd-shim h5perf_serial dockerd word-list-compress applydeltarpm edid-decode gvpr combinedeltarpm xdpyinfo nop makedeltarpm xlsatoms sfdp rpmdumpheader h5repack targetctl h5repart has160-hash sfv-hash h5stat h5fc-32 h5redeploy ccmake3 cmake3 cpack3 ctest3 rpmgraph createrepo mergerepo modifyrepo gvgen pamx debuginfo-install fftw-wisdom-to-conf xfig find-repos-of-install gvmap etex needs-restarting gvmap.sh hzip package-cleanup unflatten repo-graph vimdot repo-rss animate repoclosure compare repodiff composite repomanage conjure repoquery convert reposync display repotrack gvpack nmap show-changed-rco gxl2dot luit show-installed identify verifytree gxl2gv xdpr yum-builddep lefty xfd yum-config-manager lneato xmag yum-debug-dump mm2gv xpr yum-debug-restore neato xwd yum-groups-manager osage xwud yumdownloader patchwork irb mosquitto_passwd prune erb mosquitto_pub sccmap ruby mosquitto_sub import sgmlspl tred infotopam collateindex.pl twopi gem oscap-docker mogrify dvipdf montage eps2eps stream etags escputil ghostscript ijsgutenprint.5.2 gsdj500 pprof lprsetup.sh 411toppm pdf2dsc anytopnm pdf2ps asciitopgm pf2afm atktopbm pfbtopfa avstopam printafm bioradtopgm ps2ascii bmptopnm ps2epsi bmptoppm ps2pdf brushtopbm ps2pdf12 cameratopam ps2pdf13 cistopbm ps2pdf14 cmuwmtopbm ps2pdfwr ddbugtopbm ps2ps escp2topbm ps2ps2 eyuvtoppm unix-lpr.sh fiascotopnm emacs fitstopnm acyclic fstopgm bcomps g3topbm ccomps gemtopbm circo gemtopnm cluster giftopnm diffimg gouldtoppm dijkstra hdifftopam dot2gxl hipstopgm dotty hpcdtoppm gml2gv icontopbm graphml2gv ilbmtoppm gv2gml imgtoppm 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qrttoppm rasttopnm rawtopgm rawtoppm rgb3toppm rlatopam rletopnm sbigtopgm sgitopnm sirtopnm sldtoppm spctoppm spottopgm sputoppm srftopam st4topgm sunicontopnm svgtopam tgatoppm thinkjettopbm tifftopnm wbmptopbm winicontopam winicontoppm xbmtopbm ximtoppm xpmtoppm xvminitoppm xwdtopnm ybmtopbm yuvsplittoppm yuvtoppm yuy2topam zeisstopnm import.real fig2dev fig2ps2tex fig2ps2tex.sh pic2tpic transfig xfig-Xaw3d xeyes opcontrol system-config-firewall-tui qmi-network qmicli fftw-wisdom xmessage flex fftwf-wisdom xvidtune lex fftwl-wisdom alsatplg virtuoso-t alsaucm xulrunner testrb btt sasl2-sample-client oddjob_request sasl2-sample-server thor operf apu-1-config dtrace mev gupnp-dlna-info-2.0 xfontsel opgprof gupnp-dlna-ls-profiles-2.0 alsaunmute pdfetex amidi pdftex amixer simpdftex aplay synclient aplaymidi syndaemon arecord cvsps guild ab affixcompress arecordmidi analyze aseqdump chmorph aseqnet hunzip guile net ispellaff2myspell iecset makealias speaker-test munch cifsdd unmunch dbwrap_tool wordforms guile-tools gegl wordlist2hunspell findsmb ndiff mvxattr nping nmblookup initdb guile2 gimp pg_basebackup guile2-tools bjam pg_controldata oLschema2ldif pg_ctl aconnect dba pg_receivexlog alsa-delay dnal pg_resetxlog regdiff postgres xload ophelp postgresql-check-db-dir alsabat psw postgresql-setup regpatch postmaster kdumpctl jhat llvm-config-64 alsaloop play mbim-network regshell mbimcli regtree cdparanoia rpcclient glib-config samba-regedit gtk-config sharesec roqet smbcacls rdfproc alsamixer rec redland-db-upgrade xlogo opimport isdv4-serial-inputattach smbclient xsetwacom smbcquotas oclock smbget x11perf smbprint x11perfcomp smbspool xbiff smbtar xclipboard smbtree xclock ocount xconsole op-check-perfevents xcursorgen opannotate xcutsel opjitconv ri oparchive opreport oprofiled cgclassify cgcreate cgdelete cgexec cgget cgset cgsnapshot lscgroup lssubsys liveinst analog instperf mpi-selector extcheck jmap theora_dump_video abrt-action-analyze-vmcore theora_encode fc-cache-64 jps theora_player bhquery ksh ffcfstress sox fc-conflist ffmvforce soxi jarsigner ffset pigz schemagen drill xjc uuid ldns-chaos findcon ldns-compare-zones sechecker ldns-dane sediff ldns-dpa seinfo ldns-gen-zone sesearch ldns-key2ds irxevent ldns-keyfetcher xmode2 ldns-keygen cddb_query ldns-mx el4-rpmlint ldns-notify el5-rpmlint ldns-nsec3-hash rpmdiff ldns-read-zone rpmlint ldns-resolver flex++ fftest flux bdf2gdfont.pl ldns-revoke koi8rxterm ldns-rrsig resize ldns-signzone uxterm ldns-test-edns xterm ldns-testns otfdump ldns-update otflist ldns-verify-zone otftobdf ldns-version otfview ldns-walk jackd ldns-zcat jackrec inputattach stap lash_control ldns-zsplit lash_panel jscal vala lash_save_button jscal-restore lash_simple_client ldnsd lash_synth imlib2-config lashd jscal-store apol certmaster-getcert htdbm getcert htdigest ipa-getcert jstest go local-getcert disable-paste selfsign-getcert htpasswd blkiomon httxt2dbm blkparse display-buttons blkrawverify logresolve blktrace osinfo-db-export bno_plot.py osinfo-db-import btrace osinfo-db-path btrecord osinfo-db-validate btreplay display-coords verify_blkparse png2theora smbpasswd container-storage-setup get-versions kid Magick-config gpm-root kidc MagickCore-config hltest pip3 MagickWand-config pdbedit Wand-config mouse-test xlc javadoc profiles showimage fprintd-delete smbcontrol testparm javah smbstatus xmlsec1 db47_printlog fprintd-enroll db47_recover xlf fprintd-list db47_stat xlC fprintd-verify snmpgetnext dcraw snmpinform hivexget snmpnetstat hivexml db47_upgrade dwp hivexregedit snmpset hivexsh snmpstatus gimp-2.8 db47_verify delv gimp-console konkret mdig gimp-console-2.8 db47_codegen stap-prep package-stash-conflicts snmptable netaddr snmptest get_module snmptls systool konkretreg runc zvbi-atsc-cc snmptranslate zvbi-chains optipng ifne zvbi-ntsc-cc snmptrap estwise snmpusm estwisedb snmpvacm genewise snmpwalk genewisedb rarian-example genomewise rarian-sk-config pswdb bakefile pee nss-softokn-config rarian-sk-extract nss-config rarian-sk-gen-uuid pacat rarian-sk-get-cl pacmd rarian-sk-install pactl rarian-sk-migrate padsp rarian-sk-preinstall padsp-32 rarian-sk-rebuild pamon rarian-sk-update paplay scrollkeeper-config parec scrollkeeper-extract parecord scrollkeeper-get-cl pasuspender bakefile_gen ant pax11publish scrollkeeper-install festival bakefilize msv festival_client pulseaudio jing festival_server db47_deadlock ecj festival_server_control scrollkeeper-update saytime net-snmp-cert text2wave mib2c unpigz rarian-sk-get-extended-content-list pygobject-codegen-2.0 mib2c-update smicache snmp-bridge-mib smidiff audit2allow smidump traptoemail smilint url_handler.sh smiquery urlview smistrip audit2why smixlate db47_hotbackup mvn sss_ssh_authorizedkeys db47_load stap-report sss_ssh_knownhostsproxy start-pulseaudio-x11 createrepo_c chcat mergerepo_c encode_keychange modifyrepo_c snmpbulkget pcp sqliterepo_c snmpbulkwalk pmie curve_keygen snmpdelta pmlc berkeley_db47_svc snmpdf rb db47_archive snmpget rx db47_checkpoint sandbox db47_dump semodule_package rarian-sk-get-content-list tomcat-digest ksu rarian-sk-get-scripts tomcat-tool-wrapper kvno scrollkeeper-gen-seriesid nekohtml-filter paperconf scrollkeeper-get-content-list pmtrace pmstore scrollkeeper-get-extended-content-list mvnDebug pmval scrollkeeper-get-index-from-docpath mvnyjp ansible-runner scrollkeeper-get-toc-from-docpath modello pmcollectl scrollkeeper-get-toc-from-id dbpmda slptool scrollkeeper-preinstall pcp2csv extresso scrollkeeper-rebuilddb pmafm icotool scrollkeeper-uninstall pmgenmap fros semodule_deps pmie2col f2py semodule_expand pmieconf koji semodule_link pminfo AtoB semodule_unpackage pmiostat sepolgen pmlogcheck BtoA sepolgen-ifgen pmdate wrestool sepolgen-ifgen-attr-helper pmrep sepolicy gofmt genpmda seaudit pmclient abs2rel pmlogconf pki build-classpath pmdiff msntest build-classpath-directory pmdumplog indent build-jar-repository pmlogextract h2xs check-binary-files pmlogger cpan clean-binary-files pmloglabel spax create-jar-links pmclient_fg diff-jars pmdbg find-jar pmerr jvmjar pmevent ior-decode-2 rebuild-jar-repository pmlogmv pax xmvn-builddep numad antlr chainsaw rhino pmlogsummary ldif pip-3 pydoc3.6 llvm-config vala-gen-introspect xlc++ ibdev2netdev ts javap jconsole jdeps jinfo jrunscript jsadebugd jstack jstat jstatd native2ascii wsgen wsimport mlnx_perf msmtpd mlnx_qcn valac vapigen serialver pip-3.6 javacc.sh pmprobe w3m xml-resolver checkisomd5 xml-xparse sx jw xml-xread pmpython mwm xerces-j2-constants pmsocks uil xerces-j2-version implantisomd5 antRun rz dwz antRun.pl pmstat wxrc complete-ant-cmd.pl genresscript runant.pl sz vipe runant.py hsqldbRunUtil sb iptc logfactor5 pmfind orbit-idl-2 xemacs ctags linc-cleanup-sockets preparetips mock orbit2-config dviluatex time typelib-dump osinfo-detect flite osinfo-query flite_time oxygen-gtk-demo checkmk mofcomp jp.py pywbemcli jp.py-2 hangul jp.py-2.7 easy_install dotlockfile easy_install-2.7 ebrowse pyrsa-decrypt emacsclient pyrsa-decrypt-2 etags.emacs pyrsa-encrypt gctags luatex qdoc grep-changelog pyrsa-encrypt-2 ustr-import pyrsa-keygen crc32 texlua Xvnc cd-create-profile texluac gjs cd-fix-profile pyrsa-keygen-2 cd-iccdump pyrsa-priv2pub cd-it8 pyrsa-priv2pub-2 colormgr pyrsa-sign gss-client pyrsa-sign-2 krb5-config pyrsa-verify sim_client pyrsa-verify-2 uuclient mako-render k5srvutil g-ir-annotation-tool kadmin g-ir-compiler kdestroy g-ir-doc-tool kinit g-ir-generate klist g-ir-inspect kpasswd g-ir-scanner kswitch clubak ktutil dvilualatex yelp pygtk-codegen-2.0 cluset aria_chk latex ibus aria_dump_log clush aria_ftdump nodeset aria_pack lualatex osql aria_read_log coverage msql2mysql pdflatex tsql my_print_defaults coverage-2.7 mysql pdftexi2dvi attr mysql_find_rows texi2dvi at mysql_waitpid coverage2 mysqlaccess pygmentize mysqladmin nosetests mysqlbinlog nosetests-2.7 mysqlcheck inkscape mysqldump f2py.numpy mysqlimport osbs-2 mysqlshow osbs-2.7 mysqlslap AuditVerify compress CMCEnroll uncompress CMCRequest openal-info CMCResponse makeinfo CMCRevoke pod2texi CMCSharedToken texi2any texi2pdf atq hb-ot-shape-closure CRMFPopClient hb-shape DRMTool hb-view texindex atrm gtk-builder-convert ExtJoiner gtk-demo GenExtKeyUsage gimptool nuxwdog ed gimptool-2.0 jsonpointer red libglade-convert GenIssuerAltNameExt osinfo-install-script pyrsa-decrypt-bigfile pyrsa-decrypt-bigfile-2 pyrsa-encrypt-bigfile pyrsa-encrypt-bigfile-2 GenSubjectAltNameExt HttpClient KRATool OCSPClient PKCS10Client PKCS12Export PrettyPrintCert PrettyPrintCrl TokenInfo p7tool revoker setpin sslget tkstool pkidaemon loggen pdbtool update-patterndb instmodsh xsubpp libnetcfg perlivp config_data irdb-get lirc-config-tool lirc-setup iperf3 isort isort-2 isort-2.7 csv2rdf rdf2dot rdfgraphisomorphism rdfpipe rdfs2dot cl-dump cl-dump.pl dbgen.pl dbscan ds-logpipe.py ds-replcheck dsktune infadd ldclt logconv.pl migratecred mmldif pwdhash readnsstate repl-monitor 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vulkaninfo fixpsditps hdp-select fixpspps hamster fixscribeps hamster-service fixtpps conf-select fixwfwps cabrip fixwpps pcre2-config fixwwps mtp-albumart includeres mtp-albums psmerge nautilus-sendto isc-config.sh xsane collectl2pcp mtp-connect addftinfo mtp-delfile eqn2graph mtp-detect gdiffmk mtp-emptyfolders gindxbib mtp-files glookbib mtp-filetree grap2graph mtp-folders grefer mtp-format grodvi mtp-getfile grolbp mtp-getplaylist grolj4 mtp-hotplug hpftodit mtp-newfolder indxbib mtp-newplaylist lkbib mtp-playlists lookbib mtp-reset pdfroff mtp-sendfile pfbtops mtp-sendtr pic2graph mtp-thumb refer mtp-tracks tfmtodit lzgrep xtrace system-config-firewall mtp-trexist quickbook splint esd-config ndisasm ptked mrtg2pcp ptksh sha1hmac tkjpeg msgfmt.py tcptraceroute sha256hmac traceroute sha384hmac traceroute6 sha512hmac lzcat rdate lzcmp memusage lzdiff memusagestat lzegrep mtrace lzfgrep pygettext.py hamster-windows-service pcprofiledump ipptool ident merge rcsclean rcsdiff rcsfreeze rcsmerge nuttcp pinfo ntlm_auth wbinfo hwloc-annotate hwloc-assembler hwloc-assembler-remote hwloc-bind hwloc-calc hwloc-compress-dir hwloc-diff hwloc-distances hwloc-distrib hwloc-gather-topology hwloc-info hwloc-ls hwloc-patch hwloc-ps lstopo-no-graphics perltidy diffstat futurize futurize-2 futurize-2.7 pasteurize pasteurize-2 pasteurize-2.7 newuidmap ld.gold scanadf dstat bggen vdcomp xcmap xvpictoppm scons scons-2 scons-2.7 scons-configure-cache scons-configure-cache-2 scons-configure-cache-2.7 ipmi_ui scons-time wvdialconf scons-time-2 dcgmi scons-time-2.7 pingum mtools sconsign-v3.1.2-2.7 nv-hostengine nss-policy-check ipmicmd sconsign ipmilan sconsign-2 jpgicc2 sconsign-2.7 linkicc2 ldmsd-pre-systemd.rpmsave ipmish screen openipmi_eventd latrace openipmicmd latrace-ctl openipmish ccmakedep rmcp_ping cleanlinks sdrcomp gccmakedep solterm imake amuFormat.sh lndir mattrib makedepend mbadblocks makeg mcheck mergelib mclasserase mkdirhier mcomp mkhtmlindex mcopy revpath mdeltree xmkmf mformat authconfig psicc2 authconfig-gtk tificc2 authconfig-tui build_net_config mtoolstest system-config-authentication minfo pexec oabextract mpage system-config-language transicc2 reporter-mailx mkmanifest ganglia2pcp mlabel metaflac mmount rngtest mmove sar2pcp supermin5 htxcmdline htxscreen mpartition fixrules cpulimit htxmenu oid2name mshortname htx_build_net ipmi_sim set_linux_nets mshowfat build_net chmextract msexpand wvdial mtype mxtar pychecker nfs4_editfacl nfs4_getfacl nfs4_setfacl gview gvimdiff gvimtutor guile-config guile-snarf scrub vtysh bon_csv2html bon_csv2txt generate_randfile stty.pl aalib-config gphoto2-config gphoto2-port-config pcsc-spy cardos-tool cryptoflex-tool dnie-tool eidenv gids-tool iasecc-tool netkey-tool openpgp-tool opensc-explorer opensc-tool piv-tool pkcs11-switch pkcs11-tool pkcs15-crypt pkcs15-init pkcs15-tool sc-hsm-tool westcos-tool xserver-sdk-abi-requires chrpath mk_cmds pcap-config xvfb-run ltrace ggz-config gendesc genhtml geninfo genpng dmxaddinput dmxaddscreen dmxinfo dmxreconfig dmxresize dmxrminput dmxrmscreen dmxtodmx dmxwininfo vdltodmx xdmxconfig lsyncd gsf-vba-dump sshpass Xnest symlinks unix2mac nmapfe pg_test_timing xnmap pg_archivecleanup zenmap pg_standby zenmap-root amqp-declare-queue libusb-config pg_test_fsync sfconv amqp-delete-queue teckit_compile vacuumlo txtconv pgbench ps_mem bundle xmlrpc-c-config recode epsffit fortune getafm dbufstat.py psbook pistool psnup splslab.py psresize arc_summary.py psselect arcstat.py pstops raidz_test showchar zgenhostid rnano xlc++_r locate xlC_r updatedb xlf2003 dtplite xlf2003_r nnslog xlf2008 tcldocstrip amqp-publish dvd+rw-booktype bundler dvd+rw-format dos2unix dvd+rw-mediainfo slirp4netns dvd-ram-control xlf2008_r growisofs xlf90 sdl-config xlf90_r tmpwatch xlf95 stunnel xlf95_r ethcfg xlf_r xdelta xlc_r xdelta3 mac2unix spice-vdagent xlcuf xmms-config ldms-csv-anonymize afs5log unix2dos amqp-consume envldms.sh amqp-get fi_info ldms-csv-export-sos hddtemp virt-builder-repository virt-tail insights-client singularity fio-genzipf redhat-access-insights ldms-l2_test.sh virt-alignment-scan virt-edit mate-about thrift virt-filesystems ovis-roll-over.py lsdate virt-tar-in fi_strerror guestfish virt-copy-in virt-log httexi virt-builder virt-diff virt-tar-out fio-dedupe htxelatex jsonschema htxetex libguestfs-test-tool virt-copy-out xfconf-query mk4ht pango-list tex4ht virt-ls virt-customize mate-system-log sanity fio2gnuplot nvidia-modprobe genfio nvidia-persistenced guestmount mate-screenshot marco copylat mpaste xelatex mate-search-tool nvidia-smi marco-message nvidia-debugdump startxfce4 xdvipdfmx fwupdmgr xetex dfu-tool amstex xfce4-panel epstopdf WebKitWebDriver repstopdf exo-open pltotf mate-about-me pdfxmltex virt-make-fs tftopl xfdashboard vftovp xfdashboard-settings vptovf mate-at-properties dvipng virt-format xflock4 jadetex mate-control-center pdfjadetex mate-font-viewer rubibtex mate-thumbnail-font rumakeindex mate-typing-monitor dvitomp mate-session mfplain xfwm4 mpost xfwm4-settings xmltex virt-rescue cimmof mate-session-inhibit makeglossaries pavucontrol cimcli fi_pingpong guestunmount virt-df virt-resize cimmofl mate-session-save cimprovider mate-panel cimsub mate-wm osinfo Thunar wbemexec mate-dictionary trace-cmd mate-screensaver openlmi-mof-register oz-customize ps4pdf wnckprop jlatex2html xfce4-dict jpstoimg thunar jtexexpand xfce4-sensors latex2html thunar-settings htlatex virt-sparsify htcontext virt-cat virt-get-kernel copybw ldms_ban.sh virt-sysprep htmex virt-index-validate httex virt-inspector composeglyphs dvigif pstoimg oz-cleanup-cache nvidia-cuda-mps-control oz-generate-icicle nvidia-cuda-mps-server texexpand html2ps ocamlmklib.opt fixnt ocamlmktop.byte fixps ocamlmktop.opt ogonkify ocamlobjinfo.byte pdiff ocamlobjinfo.opt psmandup ocamlopt.byte psset ocamlcp.opt texi2dvi4a2ps ocamloptp.byte texi2html oz-install ansible-doc openlmi-doc-class2rst imagefactory ansible-pull openlmi-doc-class2uml ocamloptp.opt db2dvi ocamlprof.byte db2pdf ocamlprof.opt db2ps xfce4-terminal docbook2dvi pmlogsize docbook2pdf mate-terminal docbook2ps fio_jsonplus_clat2csv mate-session-properties xfce4-session gnome-tweaks pingum_config pango-querymodules-64 exo-desktop-item-edit imagefactoryd mate-mouse-properties mate-screensaver-command xfdesktop apirst2html 2to3-3.6 epydoc 2to3-3 epydocgui pathfix.py linuxdoc python3.6m-config rtf2rtf python3.6-config sgml2html ansible sgml2info ansible-2 sgml2latex ansible-2.7 sgml2lyx ansible-connection sgml2rtf ansible-config sgml2txt ansible-console sgmlcheck ansible-console-2 sgmlpre ansible-console-2.7 sgmlsasp exo-preferred-applications mate-appearance-properties ocamldep.byte mate-color-select cmake3-gui mlnx_conf_mgr.sh verve-focus xfce4-popup-windowmenu mate-default-applications-properties xfwm4-workspace-settings ansible-doc-2 pmjson fio_generate_plots fiologparser.py mate-desktop-item-edit xfce4-session-logout xfce4-notes run-singularity gitlab-runner mate-disk-usage-analyzer xfce4-popup-applicationsmenu mate-display-properties mate-network-properties mate-screensaver-preferences ocamllex.byte wsdump mate-keybinding-properties mate-window-properties mate-notification-properties ocamlmklib.byte fio-btrace2fio fio-verify-state ocamlc.byte xfce4-mixer fiologparser_hist.py mate-panel-test-applets xfce4-session-settings gitlab-ci-multi-runner mate-panel-screenshot xfce4-popup-directorymenu mate-keyboard-properties xfwm4-tweaks-settings xfce4-screenshooter ocamlcp.byte xfrun4 xrestop chronic mate-terminal.wrapper rdesktop combine python3.6m-ppc64le-config cdrdao ansible-doc-2.7 cue2toc ansible-galaxy toc2cddb ansible-galaxy-2 toc2cue ansible-galaxy-2.7 beegfs-check-servers ansible-inventory beegfs-ctl ansible-playbook beegfs-df ansible-playbook-2 mate-autogen errno ansible-playbook-2.7 beegfs-fsck ansible-pull-2 beegfs-net ansible-pull-2.7 mlnx_interface_mgr.sh ansible-vault mk-s390-cdboot ansible-vault-2 pungi ansible-vault-2.7 image-minimizer scap-workbench arpaname mate-system-monitor named-rrchecker xfdesktop-settings mate-doc-common mate-cpufreq-selector ostree mate-invest-chart conmon mate-power-manager virt-win-reg ifdata mate-power-preferences ldms-manpatch.sh mate-power-statistics brasero xfce4-power-manager mate-calc-cmd isutf8 xfce4-power-manager-settings ldms-meminfo.sh xfce4-notes-settings fuse-overlayfs xfce4-popup-notes ldms-pedigree xfce4-popup-hamstermenu skopeo xfce4-clipman ldms-plugins.sh xfce4-clipman-settings buildah xfce4-popup-clipman ldms-py-rename.sh xfce4-popup-whiskermenu podman xfce4-appfinder mate-calculator lckdo xfce4-accessibility-settings ldms-py-subset_test.sh xfce4-appearance-settings xdt-autogen mispipe xfce4-display-settings xdt-commit sponge xfce4-keyboard-settings isogen xfce4-mime-settings xdt-csource vidir xfce4-mouse-settings stress-ng fltk-config xfce4-settings-editor repoview pwhich xfce4-settings-manager vncserver_wrapper xfsettingsd fusermount-glusterfs xfce4-notifyd-config mock-parse-buildlog xfce4-about winpr-hash xfce4-taskmanager axfer obxprop beeond-cp openbox winpr-makecert openbox-session beeond setlayout wlfreerdp mate-volume-control wsdump-3.6 shellcheck mate-volume-control-applet bind9-config mate-calc zookeeper-client exiv2 filebeat mlx_fpga_ext mlxgearbox mlxreg mstdump event_rpcgen.py ibv_ud_pingpong cmtime rdma_xclient ucmatose dtestcm ib_read_bw ib_write_bw run_perftest_multi_devices mstmtserver fwtrace mlxburn mlxi2c mlxreg_ext mstop ldms-static-test.sh mtserver ldmsctl_args3 pckt_drop ldmsd-pre-systemd resourcedump ldmsd-wrapper.sh wqdump ldmsd_controller wqdump_ext dump2psl.pl dump2slvl.pl nvidia-xconfig inotifywait ch-build ch-fromhost ch-pull2tar ch-tar2dir mlnx_dump_parser mlx_fs_dump ofed_info ibv_cc_pingpong ibv_intf ibv_task_pingpong rxe_cfg mckey rdma_xserver udaddy dtestsrq ib_read_lat raw_ethernet_bw mstcongestion dimax_init mget_temp_ext mlxfwmanager mlxphyburn mst_cable ldms-py-syslog.sh mstmwrite itrace mlxcables mlxlink mlxtrace ibcongest ib_write_lat mstconfig mstmcra flint minit mlxconfig mlxlink_ext mlxtrace_ext ibdiagm.sh beegfs-admon-gui egk-tool opensc-asn1 inotifywatch ch-build2dir ch-pull2dir ch-ssh conda-env mlnx_qos tc_wrap.py ofed_rpm_info ibv_dctgt ibv_polldcinfo ibv_uc_pingpong ibsim rdma_client rping dapltest ib_atomic_bw ib_send_lat run_perftest_loopback mstmread flint_ext mlx_fpga mlxfwreset mlxprivhost mst_ib_add ldms-py-varset.sh raw_ethernet_fs_rate mstflint mstprivhost mdevices_info mlxdump mlxmcg mlxuptime ibdiagnet ibv_dcini ibv_devinfo ibv_srq_pingpong ibv_xsrq_pingpong rcopy riostream udpong dtestx ib_send_bw raw_ethernet_lat mstfwreset mstregdump mft_uninstall.sh mlxdump_ext mlxmdio mlxvpd ibdiagpath ch-docker2tar ch-run conda mlnx_get_vfs.pl hca_self_test.ofed ibv_asyncwatch ibv_devices ibv_rc_pingpong ibv_umr ib_acme rdma_server rstream dtest ib_atomic_lat raw_ethernet_burst_lat mstfwtrace mstvpd mget_temp mlxcables_ext mlxpci mremote ibdmchk ibdiagnet_csv2xml.py ibdmtr ibgenperm ibnetsplit ibnlparse ibtopodiff ibdump vpi_tcpdump qperf ucx_info ucx_perftest ucx_read_profile nvidia-bug-report.sh nvidia-settings ldms_local_opa2test.sh /usr/local/sbin: /usr/sbin: routel groupdel build-locale-archive create-cracklib-dict zdump groupmems zic mkdict ldconfig groupmod sln rtacct grpck glibc_post_upgrade.ppc64le packer rtmon vigr iconvconfig iconvconfig.ppc64le rtstat vipw sefcontext_compile rtpr grpconv install-info faillock chkconfig ss grpunconv alternatives getenforce fsck update-alternatives mkhomedir_helper capsh pam_console_apply getcap pam_tally2 getpcaps pam_timestamp_check setcap getsebool mkfs genl-ctrl-list matchpathcon halt nl-class-add selabel_digest nl-class-delete selabel_lookup nl-class-list selabel_lookup_best_match nl-classid-lookup pwhistory_helper nl-cls-add selabel_partial_match nl-cls-delete unix_chkpwd nl-cls-list selinux_restorecon nl-link-list selinuxconlist nl-pktloc-lookup selinuxdefcon nl-qdisc-add selinuxenabled nl-qdisc-delete selinuxexeccon nl-qdisc-list unix_update killall5 sasldblistusers2 pidof saslpasswd2 ethtool addnote lscfg hack-coff lsmcode mktree lsvio wrapper lsvpd grubby vpdupdate installkernel ip6tables setenforce init ip6tables-restore chroot ifup ip6tables-save new-kernel-pkg iptables cracklib-check iptables-restore cracklib-format iptables-save cracklib-packer xtables-multi lchage arpd lgroupadd bridge newusers cbq lgroupdel ctstat lgroupmod devlink lpasswd genl lnewusers ifcfg luseradd ifstat pwck ip luserdel lnstat lusermod nstat applygnupgdefaults routef tc addgnupghome ipset cracklib-unpacker key.dns_resolver hardlink request-key logrotate safe_finger adduser tcpd chpasswd tcpdmatch groupadd try-from slog_common_event avcstat pwconv lid pwunconv useradd userdel usermod sushell sysctl service kpartx ifdown ntpd blkdeactivate grub2-setpassword dmfilemapd sys-unconfig dmsetup usernetctl dmstats grub2-set-default addpart restorecon agetty fixfiles blkdiscard genhomedircon blkid load_policy blockdev semodule cfdisk sestatus chcpu setfiles clock setsebool ctrlaltdel grub2-mkconfig delpart grub2-install fdformat grub2-ofpathname fdisk grub2-rpm-sort findfs grub2-probe fsck.cramfs grub2-reboot fsck.minix crond fsfreeze anacron fstrim virt-what hwclock userhelper ldattach ifup-local losetup allow_hosts mkfs.cramfs croute mkfs.minix make_interfaces mkswap forceservices nologin grub2-sparc64-setup partx chat ntpq pivot_root import_keys readprofile rsshd resizepart ksshd rtcwake lirc-lsplugins runuser lircd-setup sfdisk lircd sulogin cerebro-admin swaplabel lircd-uinput swapoff lircmd swapon eapol_test switch_root wpa_cli wipefs wpa_supplicant zramctl wpa_passphrase dracut NetworkManager depmod ebtables insmod ntpdate lsmod ebtables-save modinfo ebtables-restore modprobe fxload rmmod netreport sshd weak-modules gssproxy poweroff drmgr reboot activate_firmware runlevel bootlist shutdown errinjct telinit hvcsadmin udevadm lparstat rpcbind ls-vdev rpcinfo ls-veth arping ls-vscsi clockdiff lsdevinfo ifenslave lsprop ping6 lsslot rdisc nvram tracepath nvsetenv tracepath6 ofpathname consoletype ppc64_cpu genhostid pseries_platform ppp-watch lshw sendmail xfs_db grub2-get-kernel-settings postfix rtas_dbg postkick rtas_dump sm-notify lsof rtas_event_decode start-statd pppd rtas_ibm_get_vpd postlock serv_config firewalld vpcd set_poweron_time postlog sys_ident postmap uesensor ntp-keygen nft update_flash ntpdc rndc update_flash_nv rpc.nfsd xfs_freeze plymouth-set-default-theme postmulti plymouthd postqueue pethtool postsuper pifconfig ntptime lvm rhn-profile-sync sendmail.postfix rhn-channel tickadj lvs rhn_register smtp-sink rhnreg_ks sshd-keygen pvck spacewalk-channel smtp-source rhn_check auditctl rhnsd audispd dhclient authconfig pvs dhclient-script rpcdebug xfs_fsr subscription-manager auditd xfce4-kiosk-query augenrules kexec authconfig-tui lpc criu aureport vmcore-dmesg cacertdir_rehash makedumpfile ausearch irqbalance autrace tuned opal-prd tuned-adm mdadm add_regex showmount xfs_growfs convert_dt_node_props mdmon diag_encl raid-check encl_led snmpd vgck explain_syslog snmptrapd vgs extract_opal_dump postalias gpm extract_platdump chronyd lp_diag postcat nmbd opal-dump-parse postconf smbd opal-elog-parse arp sssd opal_errd ether-wake rtas_errd postdrop iw syslog_to_svclog ifconfig usysattn ipmaddr usysfault iptunnel usysident mii-diag mount.nfs mii-tool mount.nfs4 nameif osd_login plipconfig rpc.statd route umount.nfs slattach umount.nfs4 rsyslogd blkmapd parted exportfs partprobe mountstats accessdb nfsdcltrack visudo nfsidmap fsck.xfs nfsiostat mkfs.xfs nfsstat xfs_admin rpc.gssd xfs_bmap rpc.idmapd xfs_copy rpc.mountd xfs_estimate ipmi-console xfs_info ipmi-dcmi xfs_io pppoe-discovery xfs_logprint iscsi-iname crda xfs_mdrestore iscsiuio tcsd xfs_metadump ipmi-detect xfs_mkfile ipmi-fru xfs_ncheck ipmi-locate xfs_quota ipmi-oem xfs_repair ipmi-pef-config xfs_rtcp ipmi-pet btrfs iscsiadm rmt btrfs-convert iscsid atd btrfs-debug-tree iscsistart gdm btrfs-find-root ipmi-ping btrfs-image bmc-config vpnc btrfs-map-logical bmc-device dump btrfs-select-super bmc-info nfct btrfs-zero-log ipmi-power btrfsck ipmi-raw btrfstune ipmi-sel fsck.btrfs ipmi-sensors mkfs.btrfs ipmi-sensors-config badblocks ipmiconsole debugfs ipmidetect dumpe2fs ipmimonitoring e2freefrag ipmiping e2image ipmipower e2undo pef-config e4defrag rmcp-ping filefrag rmcpping logsave ipmi-chassis dkms mklost+found httppower resize2fs update-pciids cerebrod bonobo-activation-sysconf plmpower e2fsck fsck.ext2 fsck.ext3 fsck.ext4 pcscd ipmi-chassis-config e2label tune2fs lockdev cerebro-stat powermand pppstats mkdosfs mke2fs mkfs.ext2 mkfs.ext3 mkfs.ext4 snmppower iprconfig pluginviewer iprdbg saslauthd iprdump testsaslauthd iprinit unbound-anchor iprsos lokkit iprupdate runscript dmeventd munged cgdisk cfagent fixparts cfenvd gdisk cfenvgraph sgdisk cfetool ipmi-config diod cfetoolgraph lpc.cups cfexecd init.lxc cfkey mount.fuse cfrun t1libconfig cfservd cryptsetup cfshow sgpio rdistd dosfsck xinetd dosfslabel in.mrlogind fatlabel in.mrshd fsck.fat lspci fsck.msdos setpci mkdumprd fuser fsck.vfat saned pppdump yum-complete-transaction mkfs.fat mkfs.msdos mkfs.vfat dmraid dmraid.static fsck.beegfs dtop dm_dso_reg_tool dmevent_tool pflogsumm qshape era_invalidate yumdb era_restore mosquitto cma_roce_tos lorax sasl2-shared-mechlist pdata_tools makemap connectx_port_config aide ddns-confgen mkefiboot nscd dnssec-checkds tsig-keygen bird dnssec-coverage mungekey sa dnssec-dsfromkey eventlogadm nvme dnssec-importkey ib2ib_setup rngd dnssec-keyfromlabel mlnx_tune mtr dnssec-keygen odp_stat.sh bgpd dnssec-revoke show_gids ripd dnssec-settime ibacm zcav dnssec-signzone handle-sshpw pwr dnssec-verify thin_check genrandom liveinst isc-hmac-fixup abrt-harvest-vmcore named-checkconf dnssec-keymgr named-checkzone unstr named-compilezone strfile named-journalprint thin_delta nsec3hash syspurpose rndc-confgen opensm sosreport lwresd named thin_dump dcbtool thin_ls lldpad thin_metadata_size lldptool thin_repair vdptool thin_restore checkrad thin_rmap raddebug thin_trim radiusd fsadm radmin lvchange automount lvconvert oddjobd lvcreate realm lvdisplay alsa-info certmonger alsa-info.sh cache_check alsabat-test.sh lvextend alsactl lvmconf cgclear cache_dump cgconfigparser lvmconfig cgrulesengd osmtest lvresize mount.zfs lvmdiskscan zdb cache_metadata_size zed cache_repair chgpasswd lvmdump zfs lvmetad zhack lvmpolld zinject lvmsadc zpios cache_restore splat lvmsar zpool cache_writeback fsck.zfs lvreduce zstreamdump era_check editmap sldd.sh lvremove ztest lvrename rdma era_dump anaconda ibsrpdm lvscan pvchange pvcreate pvdisplay pvmove pvremove pvresize pvscan vgcfgbackup vgcfgrestore vgchange vgconvert vgcreate vgdisplay vgexport vgextend vgimport vgimportclone vgmerge vgmknodes vgreduce vgremove vgrename vgscan vgsplit mpathconf mpathpersist multipath multipathd ipsec apachectl fcgistarter htcacheclean httpd rotatelogs suexec winbindd usb_modeswitch usb_modeswitch_dispatcher radvd radvdump zvbid sss_cache rtkitctl semanage seaudit brctl tomcat skdump sktest paperconfig avahi-daemon gss-server sim_server uuserver llnl-ldapotp-auth-client hdparm pki-upgrade pki-server pki-server-nuxwdog pki-server-upgrade pkidestroy pkispawn syslog-ng syslog-ng-ctl bak2db bak2db.pl cleanallruv.pl db2bak db2bak.pl db2index db2index.pl db2ldif db2ldif.pl dbmon.sh dbverify dn2rdn ds_selinux_enabled ds_selinux_port_query ds_systemd_ask_password_acl fixup-linkedattrs.pl fixup-memberof.pl ldif2db ldif2db.pl ldif2ldap migrate-ds.pl monitor ns-accountstatus.pl ns-activate.pl ns-inactivate.pl ns-newpwpolicy.pl ns-slapd remove-ds.pl restart-dirsrv restoreconfig saveconfig schema-reload.pl setup-ds.pl start-dirsrv status-dirsrv stop-dirsrv suffix2instance syntax-validate.pl upgradedb upgradednformat usn-tombstone-cleanup.pl verify-db.pl vlvindex regdbdump setregdomain ifrename iwconfig iwevent iwgetid iwlist iwpriv iwspy abrt-auto-reporting abrt-server abrtd abrt-configuration abrt-dbus livemedia-creator abrt-harvest-pstoreoops abrt-install-ccpp-hook libvirtd virtlockd virtlogd capinfos dftest dumpcap editcap mergecap randpkt rawshark reordercap text2pcap tshark usbmuxd ksmtuned editmap.sendmail mailstats makemap.sendmail praliases sendmail.sendmail smrsh umount.udisks2 fancontrol cups-browsed pwmconfig redhat_lsb_trigger.ppc64le sensors-detect atrun fping fping6 fsck.gfs2 accept gfs2_convert cupsaccept gfs2_edit cupsaddsmb gfs2_grow cupsctl gfs2_jadd cupsd gfs2_withdraw_helper cupsdisable glocktop cupsenable mkfs.gfs2 cupsfilter tunegfs2 cupsreject edac-ctl lpadmin iotop lpinfo ModemManager lpmove cgdcbxd reject fence_powerman foomatic-addpjloptions mount.diod powertop foomatic-cleanupdrivers diodcat getscom foomatic-extract-text portrelease foomatic-fix-xml dioddate srp_daemon foomatic-getpjloptions portreserve foomatic-kitload diodload opal-gard foomatic-nonumericalids diodls pflash foomatic-preferred-driver ldap-agent cifs.idmap foomatic-printermap-to-gutenprint-xml pppoe-connect putscom foomatic-replaceoldprinterids pm-hibernate mlnx_eswitch_set cifs.upcall mate-power-backlight-helper pm-powersave mlnx_net_rules mount.cifs snoopy-disable hugepages-ctl snoopy-enable pm-suspend dnsmasq pm-suspend-hybrid convertcfg birdc nagios nvmetcli birdcl gutenprint-foomaticppdupdate check_serial_console cups-genppd.5.2 create_auto.direct cups-genppdupdate create_dhcpd.conf vpnc-disconnect diodshowmount system-config-keyboard netperf_test ipa-certupdate wuftpd netscsid ipa-client-automount nttcp_test ipa-client-install dhcpd ipa-getkeytab ntp-wait ipa-join dhcrelay ipa-rmkeytab ntptrace ras-mc-ctl rfkill rasdaemon slapacl squid slapadd xfsdump slapauth xfsinvutil slapcat xfsrestore slapd rdump slapdn restore slapindex rrestore slappasswd callback slapschema mgetty conmand tcpdump subscription-manager-gui slaptest wireshark qb-blackbox conntrack smartctl conntrackd nbd-client tcpslice nisserver-plugin-defs smartd logwatch edvrpftpd pm-utils-bugreport-info.sh update-smart-drivedb vconfig ipmievd accton dump-acct dump-utmp ufortify mcstransd adsl-start adsl-stop pppoe gluster pppoe-relay copy-rootfs pppoe-server setup_mr_cache.sh pppoe-setup show_counters pppoe-sniff ofed_uninstall.sh pppoe-start mk-diskful pppoe-status show_irq_affinity.sh pppoe-stop sysinfo-snapshot.py uuidd check_lft_balance.pl setup mk-initramfs-oneSIS avahi-autoipd glusterfsd ibstatus llnl-ldapotp-pam-testApp run_srp_daemon in.authd srp_daemon.sh mksquashfs dump_mfts.sh unsquashfs mk-isoimage-oneSIS authconfig-gtk ibswitches cimauth system-config-authentication cimconfig dump_fts cimprovagt fcnsq cimreparchive fcoeadm cimserver fcoemon cimtrust fcping repupgrade fcrls dump_lfts.sh fipvlan mktcpip kpatch ibcacheedit gencert ibaddr nss_pcache ibccconfig iftop ibccquery stinit ibclearerrors in.tftpd ibclearcounters babeld ibfindnodesusing.pl isisd ibmirror ospf6d ibhosts ospfd ibidsverify.pl ripngd iblinkinfo zebra ibping ledctl ibnetdiscover ledmon ibnodes bonnie++ ibportstate getc_putc mk-sysimage getc_putc_helper ibrouters latencytop myclass latencytop-tui ibqueryerrors ntsysv ibroute adcli ibstat tmpwatch myprops spice-vdagentd ibcheckerrors iptstate compat_gid_gen sysctl_perf_tuning mlnx_affinity cma_roce_mode set_irq_affinity_bynode.sh set_irq_affinity.sh ldms_ls .ldms-wrapper ldmsaggctl ldms-aggd ldmsctl hddtemp mate-system-log common_irq_affinity.sh ibsysstat mate-display-properties-install-systemwide pxe-config xfce4-pm-helper consl ibtracert xfpm-power-backlight-helper rc.preinit sync-node mount.glusterfs glusterfs update-node set_irq_affinity_cpulist.sh show_irq_affinity_hints.sh vendor_post_uninstall.sh vendor_pre_uninstall.sh perfquery saquery sminfo smpdump smpquery vendstat smparquery ibcheckerrs ibchecknet ibchecknode ibcheckport ibcheckportstate ibcheckportwidth ibcheckstate ibcheckwidth ibdatacounters ibdatacounts ibdiscover.pl iblinkinfo.pl ibprintca.pl ibprintrt.pl ibprintswitch.pl ibqueryerrors.pl ibswportwatch.pl set_nodedesc.sh ldmsd ldmsd_stream_publish ldmsd_stream_subscribe ovis_json_test /opt/ibm/spectrum_mpi/jsm_pmix/bin: export_slurm_env export_smpi_env js_task_info jskill jslist jsm jsproxy jsrun jswait query_env stock admin jsm_simulator /opt/ibm/bb/bin: bbcmd /opt/ibm/flightlog/bin: decoder /opt/ibutils/bin: IBMgtSim RunSimTest dump2psl.pl dump2slvl.pl ibdiagnet ibdiagpath ibdiagui ibdmchk ibdmsh ibdmtr ibis ibmsquit ibmssh ibnlparse ibtopodiff mkSimNodeDir ============================================================================================= TESTING: configureExternalPackagesDir from config.framework(config/BuildSystem/config/framework.py:951) child config.utilities.macosFirewall 0.000003 ============================================================================================= TESTING: configureDebuggers from config.utilities.debuggers(config/BuildSystem/config/utilities/debuggers.py:21) Find a default debugger and determine its arguments Executing: uname -s stdout: Linux Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/bin/gdb...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/bin/gdb...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/bin/gdb...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/bin/gdb...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/bin/gdb...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/bin/gdb...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/bin/gdb...not found Checking for program /g/g15/faibuss/spack/bin/gdb...not found Checking for program /usr/tce/packages/valgrind/valgrind-3.16.1/bin/gdb...not found Checking for program /usr/tce/packages/cmake/cmake-3.14.5/bin/gdb...not found Checking for program /usr/tce/packages/python/python-3.8.2/bin/gdb...not found Checking for program /usr/tce/packages/cuda/cuda-11.1.1/bin/gdb...not found Checking for program /usr/tce/packages/spectrum-mpi/spectrum-mpi-rolling-release-xl-2020.11.12-cuda-11.1.1/bin/gdb...not found Checking for program /usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/bin/gdb...not found Checking for program /usr/tcetmp/bin/gdb...not found Checking for program /usr/lib64/qt-3.3/bin/gdb...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/gdb...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/gdb...not found Checking for program /usr/condabin/gdb...not found Checking for program /usr/local/bin/gdb...not found Checking for program /usr/bin/gdb...found Defined make macro "GDB" to "/usr/bin/gdb" Defined "USE_DEBUGGER" to ""gdb"" Executing: uname -s stdout: Linux Defined make macro "DSYMUTIL" to "true" Executing: uname -s stdout: Linux child config.utilities.debuggers 0.042856 ============================================================================================= TESTING: configureDirectories from PETSc.options.petscdir(config/PETSc/options/petscdir.py:23) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 0 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 14 #define PETSC_VERSION_SUBMINOR 2 #define PETSC_VERSION_PATCH 0 #define PETSC_VERSION_DATE "unknown" #define PETSC_VERSION_GIT "unknown" #define PETSC_VERSION_DATE_GIT "unknown" #define PETSC_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_ PETSC_VERSION_EQ #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ child PETSc.options.petscdir 0.004753 ============================================================================================= TESTING: getDatafilespath from PETSc.options.dataFilesPath(config/PETSc/options/dataFilesPath.py:29) Checks what DATAFILESPATH should be child PETSc.options.dataFilesPath 0.000880 ============================================================================================= TESTING: configureGit from config.sourceControl(config/BuildSystem/config/sourceControl.py:24) Find the Git executable Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/bin/git...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/bin/git...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/bin/git...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/bin/git...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/bin/git...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/bin/git...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/bin/git...not found Checking for program /g/g15/faibuss/spack/bin/git...not found Checking for program /usr/tce/packages/valgrind/valgrind-3.16.1/bin/git...not found Checking for program /usr/tce/packages/cmake/cmake-3.14.5/bin/git...not found Checking for program /usr/tce/packages/python/python-3.8.2/bin/git...not found Checking for program /usr/tce/packages/cuda/cuda-11.1.1/bin/git...not found Checking for program /usr/tce/packages/spectrum-mpi/spectrum-mpi-rolling-release-xl-2020.11.12-cuda-11.1.1/bin/git...not found Checking for program /usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/bin/git...not found Checking for program /usr/tcetmp/bin/git...found Defined make macro "GIT" to "git" Executing: git --version stdout: git version 2.29.1 ============================================================================================= TESTING: configureMercurial from config.sourceControl(config/BuildSystem/config/sourceControl.py:35) Find the Mercurial executable Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/bin/hg...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/bin/hg...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/bin/hg...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/bin/hg...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/bin/hg...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/bin/hg...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/bin/hg...not found Checking for program /g/g15/faibuss/spack/bin/hg...not found Checking for program /usr/tce/packages/valgrind/valgrind-3.16.1/bin/hg...not found Checking for program /usr/tce/packages/cmake/cmake-3.14.5/bin/hg...not found Checking for program /usr/tce/packages/python/python-3.8.2/bin/hg...not found Checking for program /usr/tce/packages/cuda/cuda-11.1.1/bin/hg...not found Checking for program /usr/tce/packages/spectrum-mpi/spectrum-mpi-rolling-release-xl-2020.11.12-cuda-11.1.1/bin/hg...not found Checking for program /usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/bin/hg...not found Checking for program /usr/tcetmp/bin/hg...not found Checking for program /usr/lib64/qt-3.3/bin/hg...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/hg...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/hg...not found Checking for program /usr/condabin/hg...not found Checking for program /usr/local/bin/hg...not found Checking for program /usr/bin/hg...found Defined make macro "HG" to "hg" Executing: hg version -q stdout: Mercurial Distributed SCM (version 2.6.2) child config.sourceControl 0.116241 ============================================================================================= TESTING: configureInstallationMethod from PETSc.options.petscclone(config/PETSc/options/petscclone.py:20) lib/petsc/bin/maint exists. This appears to be a repository clone .git directory exists Executing: ['git', 'describe', '--match=v*'] stdout: v3.14.2-269-g6713eda717 Executing: ['git', 'log', '-1', '--pretty=format:%H'] stdout: 6713eda717c7ebdd3cca43b6c97b54fe3d581586 Executing: ['git', 'log', '-1', '--pretty=format:%ci'] stdout: 2020-12-10 22:07:25 +0000 Executing: ['git', 'rev-parse', '--abbrev-ref', 'HEAD'] stdout: master Defined "VERSION_GIT" to ""v3.14.2-269-g6713eda717"" Defined "VERSION_DATE_GIT" to ""2020-12-10 22:07:25 +0000"" Defined "VERSION_BRANCH_GIT" to ""master"" child PETSc.options.petscclone 0.078151 ============================================================================================= TESTING: setNativeArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:31) ============================================================================================= TESTING: configureArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:43) Checks PETSC_ARCH and sets if not set Forcing a new configuration requested by use Setting hashfile: arch-linux-c-debug/lib/petsc/conf/configure-hash Deleting configure hash file: arch-linux-c-debug/lib/petsc/conf/configure-hash Unable to delete configure hash file: arch-linux-c-debug/lib/petsc/conf/configure-hash child PETSc.options.arch 0.070332 ============================================================================================= TESTING: setInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:39) setup installDir to either prefix or if that is not set to PETSC_DIR/PETSC_ARCH Defined make macro "PREFIXDIR" to "/g/g15/faibuss/petsc/arch-linux-c-debug" ============================================================================================= TESTING: saveReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:85) ============================================================================================= TESTING: cleanConfDir from PETSc.options.installDir(config/PETSc/options/installDir.py:78) ============================================================================================= TESTING: configureInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:62) Makes installDir subdirectories if it does not exist for both prefix install location and PETSc work install location Changed persistence directory to /g/g15/faibuss/petsc/arch-linux-c-debug/lib/petsc/conf ============================================================================================= TESTING: restoreReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:98) child PETSc.options.installDir 0.002965 ============================================================================================= TESTING: setExternalPackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:15) ============================================================================================= TESTING: cleanExternalpackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:22) child PETSc.options.externalpackagesdir 0.001054 ============================================================================================= TESTING: configureCLanguage from PETSc.options.languages(config/PETSc/options/languages.py:27) Choose whether to compile the PETSc library using a C or C++ compiler C language is C Defined "CLANGUAGE_C" to "1" Defined make macro "CLANGUAGE" to "C" child PETSc.options.languages 0.001451 ============================================================================================= TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1868) ============================================================================================= TESTING: checkEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1898) ============================================================================================= TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:1838) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ============================================================================================= TESTING: requireMpiLdPath from config.setCompilers(config/BuildSystem/config/setCompilers.py:1859) OpenMPI wrappers require LD_LIBRARY_PATH set ============================================================================================= TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:479) Initialize the compiler and linker flags Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Initialized HIPCCFLAGS to Initialized HIPCCFLAGS to Initialized LDFLAGS to Initialized SYCLCXXFLAGS to Initialized SYCLCXXFLAGS to Initialized LDFLAGS to Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Initialized CPPFLAGS to Initialized FPPFLAGS to Initialized CUDAPPFLAGS to -Wno-deprecated-gpu-targets Initialized CXXPPFLAGS to Initialized HIPPPFLAGS to -Wno-deprecated-gpu-targets Initialized SYCLPPFLAGS to -Wno-deprecated-gpu-targets Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized HIPCC_LINKER_FLAGS to [] Initialized SYCLCXX_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ============================================================================================= TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:654) Locate a functional C compiler Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/bin/mpicc...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/bin/mpicc...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/bin/mpicc...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/bin/mpicc...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/bin/mpicc...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/bin/mpicc...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/bin/mpicc...not found Checking for program /g/g15/faibuss/spack/bin/mpicc...not found Checking for program /usr/tce/packages/valgrind/valgrind-3.16.1/bin/mpicc...not found Checking for program /usr/tce/packages/cmake/cmake-3.14.5/bin/mpicc...not found Checking for program /usr/tce/packages/python/python-3.8.2/bin/mpicc...not found Checking for program /usr/tce/packages/cuda/cuda-11.1.1/bin/mpicc...not found Checking for program /usr/tce/packages/spectrum-mpi/spectrum-mpi-rolling-release-xl-2020.11.12-cuda-11.1.1/bin/mpicc...found Defined make macro "CC" to "mpicc" ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm ======== Checking running linked program ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o Testing executable /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest to see if it can be run Executing: /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest Executing: mpicc --version stdout: IBM XL C/C++ for Linux, V16.1.1 (5725-C73, 5765-J13) Version: 16.01.0001.0009 Since MPI c compiler starts with mpi, force searches for other compilers to only look for MPI compilers ============================================================================================= TESTING: checkCPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:693) Locate a functional C preprocessor Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/bin/mpicc...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/bin/mpicc...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/bin/mpicc...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/bin/mpicc...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/bin/mpicc...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/bin/mpicc...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/bin/mpicc...not found Checking for program /g/g15/faibuss/spack/bin/mpicc...not found Checking for program /usr/tce/packages/valgrind/valgrind-3.16.1/bin/mpicc...not found Checking for program /usr/tce/packages/cmake/cmake-3.14.5/bin/mpicc...not found Checking for program /usr/tce/packages/python/python-3.8.2/bin/mpicc...not found Checking for program /usr/tce/packages/cuda/cuda-11.1.1/bin/mpicc...not found Checking for program /usr/tce/packages/spectrum-mpi/spectrum-mpi-rolling-release-xl-2020.11.12-cuda-11.1.1/bin/mpicc...found Defined make macro "CPP" to "mpicc -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : ============================================================================================= TESTING: checkCUDACompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:729) Locate a functional CUDA compiler Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/bin/nvcc...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/bin/nvcc...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/bin/nvcc...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/bin/nvcc...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/bin/nvcc...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/bin/nvcc...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/bin/nvcc...not found Checking for program /g/g15/faibuss/spack/bin/nvcc...not found Checking for program /usr/tce/packages/valgrind/valgrind-3.16.1/bin/nvcc...not found Checking for program /usr/tce/packages/cmake/cmake-3.14.5/bin/nvcc...not found Checking for program /usr/tce/packages/python/python-3.8.2/bin/nvcc...not found Checking for program /usr/tce/packages/cuda/cuda-11.1.1/bin/nvcc...found Defined make macro "CUDAC" to "nvcc" ===== Checking compiler Executing: nvcc -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -Wno-deprecated-gpu-targets /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: nvcc --version stdout: nvcc: NVIDIA (R) Cuda compiler driver Copyright (c) 2005-2020 NVIDIA Corporation Built on Mon_Oct_12_20:09:47_PDT_2020 Cuda compilation tools, release 11.1, V11.1.105 Build cuda_11.1.TC455_06.29190527_0 ============================================================================================= TESTING: checkCUDAPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:769) Locate a functional CUDA preprocessor Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/bin/nvcc...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/bin/nvcc...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/bin/nvcc...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/bin/nvcc...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/bin/nvcc...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/bin/nvcc...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/bin/nvcc...not found Checking for program /g/g15/faibuss/spack/bin/nvcc...not found Checking for program /usr/tce/packages/valgrind/valgrind-3.16.1/bin/nvcc...not found Checking for program /usr/tce/packages/cmake/cmake-3.14.5/bin/nvcc...not found Checking for program /usr/tce/packages/python/python-3.8.2/bin/nvcc...not found Checking for program /usr/tce/packages/cuda/cuda-11.1.1/bin/nvcc...found Defined make macro "CUDAPP" to "nvcc -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include __global__ void testFunction() {return;}; Executing: nvcc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -Wno-deprecated-gpu-targets /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cu Preprocess stderr before filtering: : Preprocess stderr after filtering: : ============================================================================================= TESTING: checkHIPCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:803) Locate a functional HIP compiler Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/bin/hipcc...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/bin/hipcc...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/bin/hipcc...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/bin/hipcc...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/bin/hipcc...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/bin/hipcc...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/bin/hipcc...not found Checking for program /g/g15/faibuss/spack/bin/hipcc...not found Checking for program /usr/tce/packages/valgrind/valgrind-3.16.1/bin/hipcc...not found Checking for program /usr/tce/packages/cmake/cmake-3.14.5/bin/hipcc...not found Checking for program /usr/tce/packages/python/python-3.8.2/bin/hipcc...not found Checking for program /usr/tce/packages/cuda/cuda-11.1.1/bin/hipcc...not found Checking for program /usr/tce/packages/spectrum-mpi/spectrum-mpi-rolling-release-xl-2020.11.12-cuda-11.1.1/bin/hipcc...not found Checking for program /usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/bin/hipcc...not found Checking for program /usr/tcetmp/bin/hipcc...not found Checking for program /usr/lib64/qt-3.3/bin/hipcc...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/hipcc...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/hipcc...not found Checking for program /usr/condabin/hipcc...not found Checking for program /usr/local/bin/hipcc...not found Checking for program /usr/bin/hipcc...not found Checking for program /usr/local/sbin/hipcc...not found Checking for program /usr/sbin/hipcc...not found Checking for program /opt/ibm/spectrum_mpi/jsm_pmix/bin/hipcc...not found Checking for program /opt/ibm/bb/bin/hipcc...not found Checking for program /opt/ibm/flightlog/bin/hipcc...not found Checking for program /opt/ibutils/bin/hipcc...not found Checking for program /g/g15/faibuss/petsc/lib/petsc/bin/win32fe/hipcc...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/bin/opt/rocm/bin/hipcc...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/bin/opt/rocm/bin/hipcc...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/bin/opt/rocm/bin/hipcc...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/bin/opt/rocm/bin/hipcc...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/bin/opt/rocm/bin/hipcc...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/bin/opt/rocm/bin/hipcc...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/bin/opt/rocm/bin/hipcc...not found Checking for program /g/g15/faibuss/spack/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/tce/packages/valgrind/valgrind-3.16.1/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/tce/packages/cmake/cmake-3.14.5/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/tce/packages/python/python-3.8.2/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/tce/packages/cuda/cuda-11.1.1/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/tce/packages/spectrum-mpi/spectrum-mpi-rolling-release-xl-2020.11.12-cuda-11.1.1/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/tcetmp/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/lib64/qt-3.3/bin/opt/rocm/bin/hipcc...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/opt/rocm/bin/hipcc...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/condabin/opt/rocm/bin/hipcc...not found Checking for program /usr/local/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/bin/opt/rocm/bin/hipcc...not found Checking for program /usr/local/sbin/opt/rocm/bin/hipcc...not found Checking for program /usr/sbin/opt/rocm/bin/hipcc...not found Checking for program /opt/ibm/spectrum_mpi/jsm_pmix/bin/opt/rocm/bin/hipcc...not found Checking for program /opt/ibm/bb/bin/opt/rocm/bin/hipcc...not found Checking for program /opt/ibm/flightlog/bin/opt/rocm/bin/hipcc...not found Checking for program /opt/ibutils/bin/opt/rocm/bin/hipcc...not found Checking for program /g/g15/faibuss/petsc/lib/petsc/bin/win32fe/opt/rocm/bin/hipcc...not found ============================================================================================= TESTING: checkHIPPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:839) Placeholder for now ============================================================================================= TESTING: checkSYCLCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:860) Locate a functional SYCL compiler ============================================================================================= TESTING: checkSYCLPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:886) Placeholder for now ============================================================================================= TESTING: checkCxxCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:973) Locate a functional Cxx compiler Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/bin/mpiCC...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/bin/mpiCC...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/bin/mpiCC...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/bin/mpiCC...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/bin/mpiCC...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/bin/mpiCC...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/bin/mpiCC...not found Checking for program /g/g15/faibuss/spack/bin/mpiCC...not found Checking for program /usr/tce/packages/valgrind/valgrind-3.16.1/bin/mpiCC...not found Checking for program /usr/tce/packages/cmake/cmake-3.14.5/bin/mpiCC...not found Checking for program /usr/tce/packages/python/python-3.8.2/bin/mpiCC...not found Checking for program /usr/tce/packages/cuda/cuda-11.1.1/bin/mpiCC...not found Checking for program /usr/tce/packages/spectrum-mpi/spectrum-mpi-rolling-release-xl-2020.11.12-cuda-11.1.1/bin/mpiCC...found Defined make macro "CXX" to "mpiCC" ===== Checking compiler Executing: mpiCC -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ===== Checking linker Executing: mpiCC -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpiCC -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o ===== Checking linker Executing: mpiCC -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpiCC -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm ======== Checking running linked program ===== Checking linker Executing: mpiCC -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpiCC -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o Testing executable /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest to see if it can be run Executing: /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest Executing: mpiCC --version stdout: IBM XL C/C++ for Linux, V16.1.1 (5725-C73, 5765-J13) Version: 16.01.0001.0009 ============================================================================================= TESTING: checkCxxPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:1014) Locate a functional Cxx preprocessor Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/bin/mpiCC...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/bin/mpiCC...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/bin/mpiCC...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/bin/mpiCC...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/bin/mpiCC...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/bin/mpiCC...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/bin/mpiCC...not found Checking for program /g/g15/faibuss/spack/bin/mpiCC...not found Checking for program /usr/tce/packages/valgrind/valgrind-3.16.1/bin/mpiCC...not found Checking for program /usr/tce/packages/cmake/cmake-3.14.5/bin/mpiCC...not found Checking for program /usr/tce/packages/python/python-3.8.2/bin/mpiCC...not found Checking for program /usr/tce/packages/cuda/cuda-11.1.1/bin/mpiCC...not found Checking for program /usr/tce/packages/spectrum-mpi/spectrum-mpi-rolling-release-xl-2020.11.12-cuda-11.1.1/bin/mpiCC...found Defined make macro "CXXPP" to "mpiCC -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpiCC -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc Preprocess stderr before filtering: : Preprocess stderr after filtering: : ============================================================================================= TESTING: checkFortranCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:1113) Locate a functional Fortran compiler Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/bin/mpifort...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/bin/mpifort...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/bin/mpifort...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/bin/mpifort...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/bin/mpifort...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/bin/mpifort...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/bin/mpifort...not found Checking for program /g/g15/faibuss/spack/bin/mpifort...not found Checking for program /usr/tce/packages/valgrind/valgrind-3.16.1/bin/mpifort...not found Checking for program /usr/tce/packages/cmake/cmake-3.14.5/bin/mpifort...not found Checking for program /usr/tce/packages/python/python-3.8.2/bin/mpifort...not found Checking for program /usr/tce/packages/cuda/cuda-11.1.1/bin/mpifort...not found Checking for program /usr/tce/packages/spectrum-mpi/spectrum-mpi-rolling-release-xl-2020.11.12-cuda-11.1.1/bin/mpifort...found Defined make macro "FC" to "mpifort" ===== Checking compiler Executing: mpifort -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.F90 Possible ERROR while running compiler: stderr: ** main === End of Compilation 1 === 1501-510 Compilation successful for file conftest.F90. Source: program main end ===== Checking linker Executing: mpifort -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.F90 Possible ERROR while running compiler: stderr: ** main === End of Compilation 1 === 1501-510 Compilation successful for file conftest.F90. Source: program main end Executing: mpifort -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o ===== Checking linker Executing: mpifort -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.F90 Possible ERROR while running compiler: stderr: ** main === End of Compilation 1 === 1501-510 Compilation successful for file conftest.F90. Source: program main end Executing: mpifort -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm ======== Checking running linked program ===== Checking linker Executing: mpifort -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.F90 Possible ERROR while running compiler: stderr: ** main === End of Compilation 1 === 1501-510 Compilation successful for file conftest.F90. Source: program main end Executing: mpifort -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o Testing executable /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest to see if it can be run Executing: /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest Executing: mpifort --version ============================================================================================= TESTING: checkFortranPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:1150) Locate a functional Fortran preprocessor Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/bin/mpifort...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/bin/mpifort...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/bin/mpifort...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/bin/mpifort...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/bin/mpifort...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/bin/mpifort...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/bin/mpifort...not found Checking for program /g/g15/faibuss/spack/bin/mpifort...not found Checking for program /usr/tce/packages/valgrind/valgrind-3.16.1/bin/mpifort...not found Checking for program /usr/tce/packages/cmake/cmake-3.14.5/bin/mpifort...not found Checking for program /usr/tce/packages/python/python-3.8.2/bin/mpifort...not found Checking for program /usr/tce/packages/cuda/cuda-11.1.1/bin/mpifort...not found Checking for program /usr/tce/packages/spectrum-mpi/spectrum-mpi-rolling-release-xl-2020.11.12-cuda-11.1.1/bin/mpifort...found Defined make macro "FPP" to "mpifort -E" Deleting "FPP" Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/bin/mpifort...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/bin/mpifort...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/bin/mpifort...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/bin/mpifort...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/bin/mpifort...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/bin/mpifort...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/bin/mpifort...not found Checking for program /g/g15/faibuss/spack/bin/mpifort...not found Checking for program /usr/tce/packages/valgrind/valgrind-3.16.1/bin/mpifort...not found Checking for program /usr/tce/packages/cmake/cmake-3.14.5/bin/mpifort...not found Checking for program /usr/tce/packages/python/python-3.8.2/bin/mpifort...not found Checking for program /usr/tce/packages/cuda/cuda-11.1.1/bin/mpifort...not found Checking for program /usr/tce/packages/spectrum-mpi/spectrum-mpi-rolling-release-xl-2020.11.12-cuda-11.1.1/bin/mpifort...found Defined make macro "FPP" to "mpifort --use cpp32" Deleting "FPP" ============================================================================================= TESTING: checkFortranComments from config.setCompilers(config/BuildSystem/config/setCompilers.py:1172) Make sure fortran comment "!" works ===== Checking compiler Executing: mpifort -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.F90 Possible ERROR while running compiler: stderr: ** main === End of Compilation 1 === 1501-510 Compilation successful for file conftest.F90. Source: program main ! comment end Fortran comments can use ! in column 1 ============================================================================================= TESTING: checkLargeFileIO from config.setCompilers(config/BuildSystem/config/setCompilers.py:1307) ============================================================================================= TESTING: checkArchiver from config.setCompilers(config/BuildSystem/config/setCompilers.py:1406) Check that the archiver exists and can make a library usable by the compiler Executing: ar -V stdout: GNU ar version 2.27-43.base.el7 Copyright (C) 2016 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar version 2.27-43.base.el7 Copyright (C) 2016 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/bin/ar...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/bin/ar...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/bin/ar...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/bin/ar...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/bin/ar...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/bin/ar...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/bin/ar...not found Checking for program /g/g15/faibuss/spack/bin/ar...not found Checking for program /usr/tce/packages/valgrind/valgrind-3.16.1/bin/ar...not found Checking for program /usr/tce/packages/cmake/cmake-3.14.5/bin/ar...not found Checking for program /usr/tce/packages/python/python-3.8.2/bin/ar...not found Checking for program /usr/tce/packages/cuda/cuda-11.1.1/bin/ar...not found Checking for program /usr/tce/packages/spectrum-mpi/spectrum-mpi-rolling-release-xl-2020.11.12-cuda-11.1.1/bin/ar...not found Checking for program /usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/bin/ar...not found Checking for program /usr/tcetmp/bin/ar...not found Checking for program /usr/lib64/qt-3.3/bin/ar...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/ar...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/ar...not found Checking for program /usr/condabin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/bin/ranlib...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/bin/ranlib...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/bin/ranlib...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/bin/ranlib...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/bin/ranlib...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/bin/ranlib...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/bin/ranlib...not found Checking for program /g/g15/faibuss/spack/bin/ranlib...not found Checking for program /usr/tce/packages/valgrind/valgrind-3.16.1/bin/ranlib...not found Checking for program /usr/tce/packages/cmake/cmake-3.14.5/bin/ranlib...not found Checking for program /usr/tce/packages/python/python-3.8.2/bin/ranlib...not found Checking for program /usr/tce/packages/cuda/cuda-11.1.1/bin/ranlib...not found Checking for program /usr/tce/packages/spectrum-mpi/spectrum-mpi-rolling-release-xl-2020.11.12-cuda-11.1.1/bin/ranlib...not found Checking for program /usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/bin/ranlib...not found Checking for program /usr/tcetmp/bin/ranlib...not found Checking for program /usr/lib64/qt-3.3/bin/ranlib...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/ranlib...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/ranlib...not found Checking for program /usr/condabin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" Executing: /usr/bin/ar cr /var/tmp/petsc-2v0k4k61/config.setCompilers/libconf1.a /var/tmp/petsc-2v0k4k61/config.setCompilers/conf1.o Executing: /usr/bin/ranlib -c /var/tmp/petsc-2v0k4k61/config.setCompilers/libconf1.a Possible ERROR while running ranlib: stderr: /usr/bin/ranlib: invalid option -- 'c' Ranlib is not functional with your archiver. Try --with-ranlib=true if ranlib is unnecessary. Executing: ar -V stdout: GNU ar version 2.27-43.base.el7 Copyright (C) 2016 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar version 2.27-43.base.el7 Copyright (C) 2016 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/bin/ar...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/bin/ar...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/bin/ar...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/bin/ar...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/bin/ar...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/bin/ar...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/bin/ar...not found Checking for program /g/g15/faibuss/spack/bin/ar...not found Checking for program /usr/tce/packages/valgrind/valgrind-3.16.1/bin/ar...not found Checking for program /usr/tce/packages/cmake/cmake-3.14.5/bin/ar...not found Checking for program /usr/tce/packages/python/python-3.8.2/bin/ar...not found Checking for program /usr/tce/packages/cuda/cuda-11.1.1/bin/ar...not found Checking for program /usr/tce/packages/spectrum-mpi/spectrum-mpi-rolling-release-xl-2020.11.12-cuda-11.1.1/bin/ar...not found Checking for program /usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/bin/ar...not found Checking for program /usr/tcetmp/bin/ar...not found Checking for program /usr/lib64/qt-3.3/bin/ar...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/ar...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/ar...not found Checking for program /usr/condabin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/bin/ranlib...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/bin/ranlib...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/bin/ranlib...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/bin/ranlib...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/bin/ranlib...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/bin/ranlib...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/bin/ranlib...not found Checking for program /g/g15/faibuss/spack/bin/ranlib...not found Checking for program /usr/tce/packages/valgrind/valgrind-3.16.1/bin/ranlib...not found Checking for program /usr/tce/packages/cmake/cmake-3.14.5/bin/ranlib...not found Checking for program /usr/tce/packages/python/python-3.8.2/bin/ranlib...not found Checking for program /usr/tce/packages/cuda/cuda-11.1.1/bin/ranlib...not found Checking for program /usr/tce/packages/spectrum-mpi/spectrum-mpi-rolling-release-xl-2020.11.12-cuda-11.1.1/bin/ranlib...not found Checking for program /usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/bin/ranlib...not found Checking for program /usr/tcetmp/bin/ranlib...not found Checking for program /usr/lib64/qt-3.3/bin/ranlib...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/ranlib...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/ranlib...not found Checking for program /usr/condabin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib" Executing: /usr/bin/ar cr /var/tmp/petsc-2v0k4k61/config.setCompilers/libconf1.a /var/tmp/petsc-2v0k4k61/config.setCompilers/conf1.o Executing: /usr/bin/ranlib /var/tmp/petsc-2v0k4k61/config.setCompilers/libconf1.a ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.c:6:26: warning: if statement has empty body [-Wempty-body] int b = foo(1); if (b); ^ /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.c:6:26: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -L/var/tmp/petsc-2v0k4k61/config.setCompilers -lconf1 Defined make macro "AR_FLAGS" to "cr" Defined make macro "AR_LIB_SUFFIX" to "a" ============================================================================================= TESTING: checkSharedLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1521) Check that the linker can produce shared libraries Executing: uname -s stdout: Linux Checking shared linker mpicc using flags ['-shared'] Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/bin/mpicc...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/bin/mpicc...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/bin/mpicc...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/bin/mpicc...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/bin/mpicc...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/bin/mpicc...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/bin/mpicc...not found Checking for program /g/g15/faibuss/spack/bin/mpicc...not found Checking for program /usr/tce/packages/valgrind/valgrind-3.16.1/bin/mpicc...not found Checking for program /usr/tce/packages/cmake/cmake-3.14.5/bin/mpicc...not found Checking for program /usr/tce/packages/python/python-3.8.2/bin/mpicc...not found Checking for program /usr/tce/packages/cuda/cuda-11.1.1/bin/mpicc...not found Checking for program /usr/tce/packages/spectrum-mpi/spectrum-mpi-rolling-release-xl-2020.11.12-cuda-11.1.1/bin/mpicc...found Defined make macro "LD_SHARED" to "mpicc" Trying C compiler flag Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest -shared /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o Valid C linker flag -shared ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.setCompilers/libconftest.so -shared /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(void); int main() { int ret = foo(); if (ret) {} ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -L/var/tmp/petsc-2v0k4k61/config.setCompilers -lconftest Using shared linker mpicc with flags ['-shared'] and library extension so Executing: uname -s stdout: Linux Executing: uname -s stdout: Linux ============================================================================================= TESTING: checkPIC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1250) Determine the PIC option for each compiler Trying Cxx for PIC code without any compiler flag Executing: mpiCC -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ===== Checking linker Executing: mpiCC -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.setCompilers/libconftest.so -shared /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o Accepted Cxx PIC code without compiler flag Trying FC for PIC code without any compiler flag Executing: mpifort -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.F90 Possible ERROR while running compiler: stderr: ** main === End of Compilation 1 === 1501-510 Compilation successful for file conftest.F90. Source: program main end ===== Checking linker Executing: mpifort -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.F90 Possible ERROR while running compiler: stderr: ** foo === End of Compilation 1 === 1501-510 Compilation successful for file conftest.F90. Source: function foo(a) real:: a,x,bar common /xx/ x x=a foo = bar(x) end Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.setCompilers/libconftest.so -shared /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o Accepted FC PIC code without compiler flag Trying CUDA for PIC code without any compiler flag Executing: nvcc -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -Wno-deprecated-gpu-targets /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ===== Checking linker Executing: nvcc -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -Wno-deprecated-gpu-targets /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.setCompilers/libconftest.so -shared /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o Accepted CUDA PIC code without compiler flag ============================================================================================= TESTING: checkSharedLinkerPaths from config.setCompilers(config/BuildSystem/config/setCompilers.py:1633) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Executing: uname -s stdout: Linux Executing: mpicc -V stdout: export XL_CONFIG=/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlC/16.1.1/etc/xlc.cfg.rhel.7.6.gcc.4.9.3.cuda.11.1.1.v100:xlc_r rm /var/tmp/xlcW0w58fNx rm /var/tmp/xlcW1s4MMPv rm /var/tmp/xlcW2yYkkSt Trying C linker flag -Wl,-rpath, Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest -Wl,-rpath,/g/g15/faibuss/petsc /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o Valid C linker flag -Wl,-rpath,/g/g15/faibuss/petsc Executing: uname -s stdout: Linux Executing: mpicc -V stdout: export XL_CONFIG=/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlC/16.1.1/etc/xlc.cfg.rhel.7.6.gcc.4.9.3.cuda.11.1.1.v100:xlc_r rm /var/tmp/xlcW0X2WVNi rm /var/tmp/xlcW1cuEhdh rm /var/tmp/xlcW2U2gECf Trying Cxx linker flag -Wl,-rpath, Executing: mpiCC -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpiCC -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest -Wl,-rpath,/g/g15/faibuss/petsc /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-rpath,/g/g15/faibuss/petsc Executing: uname -s stdout: Linux Executing: mpicc -V stdout: export XL_CONFIG=/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlC/16.1.1/etc/xlc.cfg.rhel.7.6.gcc.4.9.3.cuda.11.1.1.v100:xlc_r rm /var/tmp/xlcW0J6tcyX rm /var/tmp/xlcW1AgVGlW rm /var/tmp/xlcW2vebb9U Trying FC linker flag -Wl,-rpath, Executing: mpifort -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.F90 Possible ERROR while running compiler: stderr: ** main === End of Compilation 1 === 1501-510 Compilation successful for file conftest.F90. Source: program main end Executing: mpifort -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest -Wl,-rpath,/g/g15/faibuss/petsc /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o Valid FC linker flag -Wl,-rpath,/g/g15/faibuss/petsc Executing: uname -s stdout: Linux Executing: mpicc -V stdout: export XL_CONFIG=/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlC/16.1.1/etc/xlc.cfg.rhel.7.6.gcc.4.9.3.cuda.11.1.1.v100:xlc_r rm /var/tmp/xlcW0qMszez rm /var/tmp/xlcW1UN2Xpy rm /var/tmp/xlcW2M3tmBx Trying CUDA linker flag -Wl,-rpath, Executing: nvcc -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -Wno-deprecated-gpu-targets /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: nvcc -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o Valid CUDA linker flag -Wl,-rpath,/g/g15/faibuss/petsc ============================================================================================= TESTING: checkLibC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1672) Test whether we need to explicitly include libc in shared linking - Mac OSX requires an explicit reference to libc for shared linking ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {void *chunk = malloc(31); free(chunk); return 0;} Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.setCompilers/libconftest.so -shared /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o Shared linking does not require an explicit libc reference ============================================================================================= TESTING: checkDynamicLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1718) Check that the linker can dynamicaly load shared libraries Checking for header: dlfcn.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_DLFCN_H" to "1" Checking for functions [dlopen dlsym dlclose] in library ['dl'] [] ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.libraries/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.libraries /var/tmp/petsc-2v0k4k61/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } char dlsym(); static void _check_dlsym() { dlsym(); } char dlclose(); static void _check_dlclose() { dlclose(); } int main() { _check_dlopen(); _check_dlsym(); _check_dlclose();; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.libraries/conftest /var/tmp/petsc-2v0k4k61/config.libraries/conftest.o -ldl Defined "HAVE_LIBDL" to "1" Adding ['dl'] to LIBS Executing: uname -s stdout: Linux Checking dynamic linker mpicc using flags ['-shared'] Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/bin/mpicc...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/bin/mpicc...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/bin/mpicc...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/bin/mpicc...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/bin/mpicc...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/bin/mpicc...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/bin/mpicc...not found Checking for program /g/g15/faibuss/spack/bin/mpicc...not found Checking for program /usr/tce/packages/valgrind/valgrind-3.16.1/bin/mpicc...not found Checking for program /usr/tce/packages/cmake/cmake-3.14.5/bin/mpicc...not found Checking for program /usr/tce/packages/python/python-3.8.2/bin/mpicc...not found Checking for program /usr/tce/packages/cuda/cuda-11.1.1/bin/mpicc...not found Checking for program /usr/tce/packages/spectrum-mpi/spectrum-mpi-rolling-release-xl-2020.11.12-cuda-11.1.1/bin/mpicc...found Defined make macro "DYNAMICLINKER" to "mpicc" Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.setCompilers /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest -shared /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -ldl Valid C linker flag -shared ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.setCompilers /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("test");return 0;} Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.setCompilers/libconftest.so -shared /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -ldl ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.setCompilers /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { void *handle = dlopen("/var/tmp/petsc-2v0k4k61/config.setCompilers/libconftest.so", 0); int (*foo)(void) = (int (*)(void)) dlsym(handle, "foo"); if (!foo) { printf("Could not load symbol\n"); return -1; } if ((*foo)()) { printf("Invalid return from foo()\n"); return -1; } if (dlclose(handle)) { printf("Could not close library\n"); return -1; } ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -ldl Using dynamic linker mpicc with flags ['-shared'] and library extension so ============================================================================================= TESTING: output from config.setCompilers(config/BuildSystem/config/setCompilers.py:1767) Output module data as defines and substitutions Substituting "CC" with "mpicc" Substituting "CFLAGS" with "" Defined make macro "CC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "CPP" with "mpicc -E" Substituting "CPPFLAGS" with "" Substituting "CUDAC" with "nvcc" Substituting "CUDAFLAGS" with "" Substituting "CUDAPP" with "nvcc -E" Substituting "CUDAPPFLAGS" with "-Wno-deprecated-gpu-targets" Substituting "CXX" with "mpiCC" Substituting "CXX_CXXFLAGS" with "" Substituting "CXXFLAGS" with "" Substituting "CXX_LINKER_SLFLAG" with "-Wl,-rpath," Substituting "CXXPP" with "mpiCC -E" Substituting "CXXPPFLAGS" with "" Substituting "FC" with "mpifort" Substituting "FFLAGS" with "" Defined make macro "FC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "LDFLAGS" with "" Substituting "LIBS" with "-ldl " Substituting "SHARED_LIBRARY_FLAG" with "-shared" child config.setCompilers 19.063124 ============================================================================================= TESTING: checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:31) ============================================================================================= TESTING: configureSharedLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:47) Checks whether shared libraries should be used, for which you must - Specify --with-shared-libraries - Have found a working shared linker Defines PETSC_USE_SHARED_LIBRARIES if they are used Executing: uname -s stdout: Linux Defined make rule "shared_arch" with dependencies "shared_linux" and code [] Defined make macro "SONAME_FUNCTION" to "$(1).so.$(2)" Defined make macro "SL_LINKER_FUNCTION" to "-shared -Wl,-soname,$(call SONAME_FUNCTION,$(notdir $(1)),$(2))" Executing: mpicc -v stdout: exec: export(export,XL_CONFIG=/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlC/16.1.1/etc/xlc.cfg.rhel.7.6.gcc.4.9.3.cuda.11.1.1.v100:xlc_r,NULL) unlink: /var/tmp/xlcW0EGKgyt unlink: /var/tmp/xlcW1V6rYSu unlink: /var/tmp/xlcW2FN5Gdw Defined make macro "BUILDSHAREDLIB" to "yes" Defined "USE_SHARED_LIBRARIES" to "1" ============================================================================================= TESTING: configureDynamicLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:92) Checks whether dynamic loading is available (with dlfcn.h and libdl) Defined "HAVE_DYNAMIC_LIBRARIES" to "1" ============================================================================================= TESTING: configureSerializedFunctions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:98) Defines PETSC_SERIALIZE_FUNCTIONS if they are used Requires shared libraries child PETSc.options.sharedLibraries 0.162391 ============================================================================================= TESTING: configureIndexSize from PETSc.options.indexTypes(config/PETSc/options/indexTypes.py:39) Defined make macro "PETSC_INDEX_SIZE" to "32" child PETSc.options.indexTypes 0.001183 ============================================================================================= TESTING: configureCompilerFlags from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:81) Get the default compiler flags Defined make macro "C_VERSION" to "IBM XL C/C++ for Linux, V16.1.1 (5725-C73, 5765-J13)" Defined make macro "MPICC_SHOW" to "/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/bin/xlc_r -I/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/include -pthread -L/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib -lmpiprofilesupport -lmpi_ibm -Wl,-rpath,/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib" Trying C compiler flag -Wall Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.setCompilers -Wall /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wall Trying C compiler flag -Wwrite-strings Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.setCompilers -Wall -Wwrite-strings /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wwrite-strings Trying C compiler flag -Wno-strict-aliasing Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wno-strict-aliasing Trying C compiler flag -Wno-unknown-pragmas Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wno-unknown-pragmas Trying C compiler flag -fstack-protector Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fstack-protector Trying C compiler flag -mfp16-format=ieee Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -mfp16-format=ieee /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: warning: 1540-5200 The option "-mfp16-format=ieee" is not supported. 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -mfp16-format=ieee due to warning: 1540-5200 The option "-mfp16-format=ieee" is not supported. 1 warning generated. Rejected C compiler flag -mfp16-format=ieee Trying C compiler flag -fvisibility=hidden Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fvisibility=hidden Defined make macro "MPICC_SHOW" to "/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/bin/xlc_r -I/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/include -pthread -L/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib -lmpiprofilesupport -lmpi_ibm -Wl,-rpath,/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib" Trying C compiler flag -g3 Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -g3 Defined make macro "Cxx_VERSION" to "IBM XL C/C++ for Linux, V16.1.1 (5725-C73, 5765-J13)" Defined make macro "MPICXX_SHOW" to "/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/bin/xlC_r -I/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/include -pthread -L/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib -lmpiprofilesupport -lmpi_ibm -Wl,-rpath,/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib" Trying Cxx compiler flag -Wall Executing: mpiCC -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -Wall /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wall Trying Cxx compiler flag -Wwrite-strings Executing: mpiCC -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -Wall -Wwrite-strings /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wwrite-strings Trying Cxx compiler flag -Wno-strict-aliasing Executing: mpiCC -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wno-strict-aliasing Trying Cxx compiler flag -Wno-unknown-pragmas Executing: mpiCC -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wno-unknown-pragmas Trying Cxx compiler flag -fstack-protector Executing: mpiCC -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -fstack-protector Trying Cxx compiler flag -fvisibility=hidden Executing: mpiCC -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -fvisibility=hidden Defined make macro "MPICXX_SHOW" to "/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/bin/xlC_r -I/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/include -pthread -L/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib -lmpiprofilesupport -lmpi_ibm -Wl,-rpath,/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib" Trying Cxx compiler flag -g Executing: mpiCC -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -g Defined make macro "FC_VERSION" to "Unknown" Defined make macro "MPIFC_SHOW" to "/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/bin/xlf_r -I/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/include -qthreaded -I/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib/XL -L/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib -lmpiprofilesupport -lmpi_ibm_usempi -lmpi_ibm_mpifh -lmpi_ibm -Wl,-rpath,/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib" Defined make macro "MPIFC_SHOW" to "/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/bin/xlf_r -I/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/include -qthreaded -I/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib/XL -L/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib -lmpiprofilesupport -lmpi_ibm_usempi -lmpi_ibm_mpifh -lmpi_ibm -Wl,-rpath,/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib" Trying FC compiler flag -g Executing: mpifort -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -g /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.F90 Possible ERROR while running compiler: stderr: ** main === End of Compilation 1 === 1501-510 Compilation successful for file conftest.F90. Source: program main end Added FC compiler flag -g Defined make macro "CUDA_VERSION" to "nvcc: NVIDIA (R) Cuda compiler driver" Trying CUDA compiler flag -g Executing: nvcc -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -g -Wno-deprecated-gpu-targets /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added CUDA compiler flag -g child config.compilerFlags 7.854249 Executing: mpicc --help | head -n 20 stdout: xl-wrapper added options: -vvv or -vvvv Print the final compiler invocation after enhancement -gcc-name=/usr/tce/packages/gcc/gcc-8.3.1/bin/gcc converted to --gcc-toolchain -gxx-name=/usr/tce/packages/gcc/gcc-8.3.1/bin/g++ converted to --gcc-toolchain -qv100, -qp100 Cross-compile for volta or pascal xl-wrapper enhanced options: --gcc-toolchain=/usr Use base gcc 4.8 with rpaths --gcc-toolchain=/usr/tce/packages/gcc/gcc-8.3.1 Use gcc 8.3.1 with rpaths --help Also prints this xl-wrapper help --enable-new-dtags Removes, breaks our codes (and evil) -Wl,--enable-new-dtags Removes, breaks our codes (and evil) spectrum-mpi-wrapper added options: -vvv Print the final mpi invocation after enhancement spectrum-mpi-wrapper enhanced options: -gcc-name= converted to --gcc-toolchain -gxx-name= converted to --gcc-toolchain ============================================================================================= TESTING: checkC99Flag from config.compilers(config/BuildSystem/config/compilers.py:1416) Check for -std=c99 or equivalent flag Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { float x[2],y; y = FLT_ROUNDS; // c++ comment int j = 2; for (int i=0; i<2; i++){ x[i] = i*j*y; } ; return 0; } Accepted C99 compile flag: ============================================================================================= TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:156) Check for the C/CXX restrict keyword Executing: mpicc -V stdout: export XL_CONFIG=/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlC/16.1.1/etc/xlc.cfg.rhel.7.6.gcc.4.9.3.cuda.11.1.1.v100:xlc_r rm /var/tmp/xlcW0ZS2Z2T rm /var/tmp/xlcW1xQ532Z rm /var/tmp/xlcW2ED5725 ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.compilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.compilers/conftest.c Possible ERROR while running compiler: stderr: /var/tmp/petsc-2v0k4k61/config.compilers/conftest.c:5:20: warning: unused variable 'x' [-Wunused-variable] float * __restrict x;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set C restrict keyword to __restrict Defined "C_RESTRICT" to "__restrict" ============================================================================================= TESTING: checkCFormatting from config.compilers(config/BuildSystem/config/compilers.py:411) Activate format string checking if using the GNU compilers ============================================================================================= TESTING: checkCInline from config.compilers(config/BuildSystem/config/compilers.py:126) Check for C inline keyword ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.compilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set C Inline keyword to inline Defined "C_INLINE" to "inline" ============================================================================================= TESTING: checkDynamicLoadFlag from config.compilers(config/BuildSystem/config/compilers.py:422) Checks that dlopen() takes RTLD_XXX, and defines PETSC_HAVE_RTLD_XXX if it does ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.compilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LAZY);dlopen(libname, RTLD_NOW);dlopen(libname, RTLD_LOCAL);dlopen(libname, RTLD_GLOBAL); ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.compilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_LAZY" to "1" Defined "HAVE_RTLD_NOW" to "1" Defined "HAVE_RTLD_LOCAL" to "1" Defined "HAVE_RTLD_GLOBAL" to "1" ============================================================================================= TESTING: checkCLibraries from config.compilers(config/BuildSystem/config/compilers.py:220) Determines the libraries needed to link with C compiled code ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.compilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void asub(void) {char s[16];printf("testing %s",s);} ===== Checking linker Executing: mpifort -c -o /var/tmp/petsc-2v0k4k61/config.compilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -g /var/tmp/petsc-2v0k4k61/config.compilers/conftest.F90 Possible ERROR while running compiler: stderr: ** main === End of Compilation 1 === 1501-510 Compilation successful for file conftest.F90. Source: program main print*,'testing' stop end Executing: mpifort -o /var/tmp/petsc-2v0k4k61/config.compilers/conftest -g /var/tmp/petsc-2v0k4k61/config.compilers/conftest.o /var/tmp/petsc-2v0k4k61/config.compilers/confc.o -ldl C libraries are not needed when using Fortran linker ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.compilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void asub(void) {char s[16];printf("testing %s",s);} ===== Checking linker Executing: mpiCC -c -o /var/tmp/petsc-2v0k4k61/config.compilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g /var/tmp/petsc-2v0k4k61/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Executing: mpiCC -o /var/tmp/petsc-2v0k4k61/config.compilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g /var/tmp/petsc-2v0k4k61/config.compilers/conftest.o /var/tmp/petsc-2v0k4k61/config.compilers/confc.o -ldl C libraries are not needed when using C++ linker ============================================================================================= TESTING: checkDependencyGenerationFlag from config.compilers(config/BuildSystem/config/compilers.py:1367) Check if -MMD works for dependency generation, and add it if it does Trying C compiler flag -MMD -MP Defined make macro "C_DEPFLAGS" to "-MMD -MP" Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 -MMD -MP /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Trying Cxx compiler flag -MMD -MP Defined make macro "CXX_DEPFLAGS" to "-MMD -MP" Executing: mpiCC -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -MMD -MP /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Trying CUDA compiler flag -MMD -MP Defined make macro "CUDA_DEPFLAGS" to "-MMD -MP" Executing: nvcc -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -g -MMD -MP -Wno-deprecated-gpu-targets /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpiCC --help | head -n 20 stdout: xl-wrapper added options: -vvv or -vvvv Print the final compiler invocation after enhancement -gcc-name=/usr/tce/packages/gcc/gcc-8.3.1/bin/gcc converted to --gcc-toolchain -gxx-name=/usr/tce/packages/gcc/gcc-8.3.1/bin/g++ converted to --gcc-toolchain -qv100, -qp100 Cross-compile for volta or pascal xl-wrapper enhanced options: --gcc-toolchain=/usr Use base gcc 4.8 with rpaths --gcc-toolchain=/usr/tce/packages/gcc/gcc-8.3.1 Use gcc 8.3.1 with rpaths --help Also prints this xl-wrapper help --enable-new-dtags Removes, breaks our codes (and evil) -Wl,--enable-new-dtags Removes, breaks our codes (and evil) spectrum-mpi-wrapper added options: -vvv Print the final mpi invocation after enhancement spectrum-mpi-wrapper enhanced options: -gcc-name= converted to --gcc-toolchain -gxx-name= converted to --gcc-toolchain ============================================================================================= TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:156) Check for the C/CXX restrict keyword Executing: mpicc -V stdout: export XL_CONFIG=/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlC/16.1.1/etc/xlc.cfg.rhel.7.6.gcc.4.9.3.cuda.11.1.1.v100:xlc_r rm /var/tmp/xlcW04JMaPN rm /var/tmp/xlcW10JFnZV rm /var/tmp/xlcW2jGsA93 ===== Checking compiler Executing: mpiCC -c -o /var/tmp/petsc-2v0k4k61/config.compilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g /var/tmp/petsc-2v0k4k61/config.compilers/conftest.cc Possible ERROR while running compiler: stderr: /var/tmp/petsc-2v0k4k61/config.compilers/conftest.cc:5:20: warning: unused variable 'x' [-Wunused-variable] float * __restrict x;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set Cxx restrict keyword to __restrict Defined "CXX_RESTRICT" to "__restrict" ============================================================================================= TESTING: checkCxxDialect from config.compilers(config/BuildSystem/config/compilers.py:469) Determine the Cxx dialect supported by the compiler [and correspoding compiler option - if any]. -with-cxx-dialect can take options: auto: use highest dialect configure can determine cxx17: [future?] cxx14: gnu++14 or c++14 cxx11: gnu++11 or c++11 0: disable CxxDialect check and use compiler default checkCxxDialect: checking CXX14 with flag: Executing: mpiCC -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc Possible ERROR while running compiler: exit code 1 stderr: In file included from /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc:4: In file included from /usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64/gcc/powerpc64le-unknown-linux-gnu/4.9.3/../../../../include/c++/4.9.3/random:35: /usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64/gcc/powerpc64le-unknown-linux-gnu/4.9.3/../../../../include/c++/4.9.3/bits/c++0x_warning.h:32:2: error: This file requires compiler and library support for the ISO C++ 2011 standard. This support is currently experimental, and must be enabled with the -std=c++11 or -std=gnu++11 compiler options. #error This file requires compiler and library support for the \ ^ /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc:7:32: error: unknown type name 'constexpr' template constexpr T Cubed( T x ) { return x*x*x; } ^ /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc:7:42: warning: variable templates are a C++14 extension [-Wc++14-extensions] template constexpr T Cubed( T x ) { return x*x*x; } ^ /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc:7:43: error: expected ';' at end of declaration template constexpr T Cubed( T x ) { return x*x*x; } ^ ; /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc:7:51: error: unknown type name 'T' template constexpr T Cubed( T x ) { return x*x*x; } ^ /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc:7:44: error: C++ requires a type specifier for all declarations template constexpr T Cubed( T x ) { return x*x*x; } ^ /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc:12:16: error: no type named 'random_device' in namespace 'std' std::random_device rd; ~~~~~^ /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc:13:23: error: expected ';' after expression std::mt19937 mt(rd()); ^ ; /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc:13:16: error: no member named 'mt19937' in namespace 'std' std::mt19937 mt(rd()); ~~~~~^ /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc:14:16: error: no member named 'normal_distribution' in namespace 'std' std::normal_distribution dist(0,1); ~~~~~^ /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc:14:42: error: expected '(' for function-style cast or type construction std::normal_distribution dist(0,1); ~~~~~~^ /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc:14:44: error: use of undeclared identifier 'dist' std::normal_distribution dist(0,1); ^ /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc:15:33: error: use of undeclared identifier 'mt' const double x = dist(mt); ^ /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc:18:11: error: unknown type name 'constexpr' constexpr std::complex I(0.0,1.0); ^ /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc:18:26: error: definition or redeclaration of 'complex' not allowed inside a function constexpr std::complex I(0.0,1.0); ~~~~~^ /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc:18:26: error: template specialization requires 'template<>' constexpr std::complex I(0.0,1.0); ^ ~~~~~~~~ template<> /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc:18:26: error: no variable template matches specialization /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc:18:33: error: expected ';' at end of declaration constexpr std::complex I(0.0,1.0); ^ ; /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc:19:11: warning: 'auto' type specifier is a C++11 extension [-Wc++11-extensions] auto lambda = [](auto x, auto y) {return x + y;}; ^ /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc:19:25: error: expected expression auto lambda = [](auto x, auto y) {return x + y;}; ^ 2 warnings and 18 errors generated. Error while processing /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc. Source: #include "confdefs.h" #include "conffix.h" #include #include #include template constexpr T Cubed( T x ) { return x*x*x; } int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); std::cout << x; constexpr std::complex I(0.0,1.0); auto lambda = [](auto x, auto y) {return x + y;}; return lambda(3,4); ; return 0; } Rejecting compiler flag due to nonzero status from link Rejecting compiler flag due to In file included from /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc:4: In file included from /usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64/gcc/powerpc64le-unknown-linux-gnu/4.9.3/../../../../include/c++/4.9.3/random:35: /usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64/gcc/powerpc64le-unknown-linux-gnu/4.9.3/../../../../include/c++/4.9.3/bits/c++0x_warning.h:32:2: error: This file requires compiler and library support for the ISO C++ 2011 standard. This support is currently experimental, and must be enabled with the -std=c++11 or -std=gnu++11 compiler options. #error This file requires compiler and library support for the \ ^ /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc:7:32: error: unknown type name 'constexpr' template constexpr T Cubed( T x ) { return x*x*x; } ^ /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc:7:42: warning: variable templates are a C++14 extension [-Wc++14-extensions] template constexpr T Cubed( T x ) { return x*x*x; } ^ /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc:7:43: error: expected ';' at end of declaration template constexpr T Cubed( T x ) { return x*x*x; } ^ ; /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc:7:51: error: unknown type name 'T' template constexpr T Cubed( T x ) { return x*x*x; } ^ /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc:7:44: error: C++ requires a type specifier for all declarations template constexpr T Cubed( T x ) { return x*x*x; } ^ /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc:12:16: error: no type named 'random_device' in namespace 'std' std::random_device rd; ~~~~~^ /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc:13:23: error: expected ';' after expression std::mt19937 mt(rd()); ^ ; /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc:13:16: error: no member named 'mt19937' in namespace 'std' std::mt19937 mt(rd()); ~~~~~^ /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc:14:16: error: no member named 'normal_distribution' in namespace 'std' std::normal_distribution dist(0,1); ~~~~~^ /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc:14:42: error: expected '(' for function-style cast or type construction std::normal_distribution dist(0,1); ~~~~~~^ /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc:14:44: error: use of undeclared identifier 'dist' std::normal_distribution dist(0,1); ^ /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc:15:33: error: use of undeclared identifier 'mt' const double x = dist(mt); ^ /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc:18:11: error: unknown type name 'constexpr' constexpr std::complex I(0.0,1.0); ^ /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc:18:26: error: definition or redeclaration of 'complex' not allowed inside a function constexpr std::complex I(0.0,1.0); ~~~~~^ /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc:18:26: error: template specialization requires 'template<>' constexpr std::complex I(0.0,1.0); ^ ~~~~~~~~ template<> /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc:18:26: error: no variable template matches specialization /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc:18:33: error: expected ';' at end of declaration constexpr std::complex I(0.0,1.0); ^ ; /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc:19:11: warning: 'auto' type specifier is a C++11 extension [-Wc++11-extensions] auto lambda = [](auto x, auto y) {return x + y;}; ^ /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc:19:25: error: expected expression auto lambda = [](auto x, auto y) {return x + y;}; ^ 2 warnings and 18 errors generated. Error while processing /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc. PETSc Error: No output file produced checkCxxDialect: checking CXX14 with flag: -std=gnu++14 Defined "HAVE_CXX_DIALECT_CXX14" to "1" Defined "HAVE_CXX_DIALECT_CXX11" to "1" Executing: mpiCC -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -std=gnu++14 /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include template constexpr T Cubed( T x ) { return x*x*x; } int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); std::cout << x; constexpr std::complex I(0.0,1.0); auto lambda = [](auto x, auto y) {return x + y;}; return lambda(3,4); ; return 0; } ============================================================================================= TESTING: checkCxxOptionalExtensions from config.compilers(config/BuildSystem/config/compilers.py:441) Check whether the C++ compiler (IBM xlC, OSF5) need special flag for .c files which contain C++ Executing: mpiCC -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -std=gnu++14 /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 1 stderr: error: invalid argument '-std=gnu++14' not allowed with 'C/ObjC' Error while processing /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.c. Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Rejecting compiler flag due to nonzero status from link Rejecting compiler flag due to error: invalid argument '-std=gnu++14' not allowed with 'C/ObjC' Error while processing /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.c. PETSc Error: No output file produced Executing: mpiCC -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -+ -std=gnu++14 /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.c:5:22: warning: private field 'i' is not used [-Wunused-private-field] class somename { int i; };; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Added Cxx compiler flag -+ ============================================================================================= TESTING: checkCxxInline from config.compilers(config/BuildSystem/config/compilers.py:141) Check for C++ inline keyword ===== Checking compiler Executing: mpiCC -c -o /var/tmp/petsc-2v0k4k61/config.compilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -+ -std=gnu++14 /var/tmp/petsc-2v0k4k61/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set Cxx Inline keyword to inline Defined "CXX_INLINE" to "inline" ============================================================================================= TESTING: checkCxxLibraries from config.compilers(config/BuildSystem/config/compilers.py:553) Determines the libraries needed to link with C++ from C and Fortran ===== Checking compiler Executing: mpiCC -c -o /var/tmp/petsc-2v0k4k61/config.compilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -+ -std=gnu++14 /var/tmp/petsc-2v0k4k61/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.compilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.compilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.compilers/conftest.o /var/tmp/petsc-2v0k4k61/config.compilers/confc.o -ldl Possible ERROR while running linker: exit code 1 stderr: /var/tmp/petsc-2v0k4k61/config.compilers/confc.o: In function `__gnu_cxx::new_allocator::deallocate(int*, unsigned long)': /usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64/gcc/powerpc64le-unknown-linux-gnu/4.9.3/../../../../include/c++/4.9.3/ext/new_allocator.h:110: undefined reference to `operator delete(void*)' /var/tmp/petsc-2v0k4k61/config.compilers/confc.o: In function `asub()': /var/tmp/petsc-2v0k4k61/config.compilers/conftest.cc:7: undefined reference to `__cxa_allocate_exception' /var/tmp/petsc-2v0k4k61/config.compilers/conftest.cc:7: undefined reference to `__cxa_throw' /var/tmp/petsc-2v0k4k61/config.compilers/conftest.cc:7: undefined reference to `__xlc_catch_match' /var/tmp/petsc-2v0k4k61/config.compilers/conftest.cc:7: undefined reference to `__cxa_begin_catch' /var/tmp/petsc-2v0k4k61/config.compilers/conftest.cc:7: undefined reference to `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)' /var/tmp/petsc-2v0k4k61/config.compilers/conftest.cc:7: undefined reference to `__cxa_end_catch' /var/tmp/petsc-2v0k4k61/config.compilers/conftest.cc:7: undefined reference to `__cxa_end_catch' /var/tmp/petsc-2v0k4k61/config.compilers/conftest.cc:7: undefined reference to `__cxa_begin_catch' /var/tmp/petsc-2v0k4k61/config.compilers/conftest.cc:7: undefined reference to `__cxa_rethrow' /var/tmp/petsc-2v0k4k61/config.compilers/confc.o: In function `::__srterm(void)': /var/tmp/petsc-2v0k4k61/config.compilers/conftest.cc:7: undefined reference to `std::ios_base::Init::~Init()' /var/tmp/petsc-2v0k4k61/config.compilers/confc.o: In function `__sinit65535': /var/tmp/petsc-2v0k4k61/config.compilers/conftest.cc:7: undefined reference to `std::ios_base::Init::Init()' /var/tmp/petsc-2v0k4k61/config.compilers/confc.o:(.toc+0x0): undefined reference to `typeinfo for int' /var/tmp/petsc-2v0k4k61/config.compilers/confc.o:(.toc+0x8): undefined reference to `std::cout' /var/tmp/petsc-2v0k4k61/config.compilers/confc.o:(.eh_frame+0x13): undefined reference to `__IBMCPlusPlusExceptionV3' Executing: uname -s stdout: Linux ===== Checking compiler Executing: mpiCC -c -o /var/tmp/petsc-2v0k4k61/config.compilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -+ -std=gnu++14 /var/tmp/petsc-2v0k4k61/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.compilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.compilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.compilers/conftest.o /var/tmp/petsc-2v0k4k61/config.compilers/confc.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /var/tmp/petsc-2v0k4k61/config.compilers/confc.o: In function `asub()': /var/tmp/petsc-2v0k4k61/config.compilers/conftest.cc:7: undefined reference to `__xlc_catch_match' /var/tmp/petsc-2v0k4k61/config.compilers/confc.o:(.eh_frame+0x13): undefined reference to `__IBMCPlusPlusExceptionV3' C++ code cannot directly be linked with C linker using -lstdc++, therefore will determine needed C++ libraries ===== Checking compiler Executing: mpiCC -c -o /var/tmp/petsc-2v0k4k61/config.compilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -+ -std=gnu++14 /var/tmp/petsc-2v0k4k61/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} ===== Checking linker Executing: mpifort -c -o /var/tmp/petsc-2v0k4k61/config.compilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -g /var/tmp/petsc-2v0k4k61/config.compilers/conftest.F90 Possible ERROR while running compiler: stderr: ** main === End of Compilation 1 === 1501-510 Compilation successful for file conftest.F90. Source: program main print*,'testing' stop end Executing: mpifort -o /var/tmp/petsc-2v0k4k61/config.compilers/conftest -g /var/tmp/petsc-2v0k4k61/config.compilers/conftest.o /var/tmp/petsc-2v0k4k61/config.compilers/confc.o -ldl Possible ERROR while running linker: exit code 1 stderr: /var/tmp/petsc-2v0k4k61/config.compilers/confc.o: In function `__gnu_cxx::new_allocator::deallocate(int*, unsigned long)': /usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64/gcc/powerpc64le-unknown-linux-gnu/4.9.3/../../../../include/c++/4.9.3/ext/new_allocator.h:110: undefined reference to `operator delete(void*)' /var/tmp/petsc-2v0k4k61/config.compilers/confc.o: In function `asub()': /var/tmp/petsc-2v0k4k61/config.compilers/conftest.cc:7: undefined reference to `__cxa_allocate_exception' /var/tmp/petsc-2v0k4k61/config.compilers/conftest.cc:7: undefined reference to `__cxa_throw' /var/tmp/petsc-2v0k4k61/config.compilers/conftest.cc:7: undefined reference to `__xlc_catch_match' /var/tmp/petsc-2v0k4k61/config.compilers/conftest.cc:7: undefined reference to `__cxa_begin_catch' /var/tmp/petsc-2v0k4k61/config.compilers/conftest.cc:7: undefined reference to `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)' /var/tmp/petsc-2v0k4k61/config.compilers/conftest.cc:7: undefined reference to `__cxa_end_catch' /var/tmp/petsc-2v0k4k61/config.compilers/conftest.cc:7: undefined reference to `__cxa_end_catch' /var/tmp/petsc-2v0k4k61/config.compilers/conftest.cc:7: undefined reference to `__cxa_begin_catch' /var/tmp/petsc-2v0k4k61/config.compilers/conftest.cc:7: undefined reference to `__cxa_rethrow' /var/tmp/petsc-2v0k4k61/config.compilers/confc.o: In function `::__srterm(void)': /var/tmp/petsc-2v0k4k61/config.compilers/conftest.cc:7: undefined reference to `std::ios_base::Init::~Init()' /var/tmp/petsc-2v0k4k61/config.compilers/confc.o: In function `__sinit65535': /var/tmp/petsc-2v0k4k61/config.compilers/conftest.cc:7: undefined reference to `std::ios_base::Init::Init()' /var/tmp/petsc-2v0k4k61/config.compilers/confc.o:(.toc+0x10): undefined reference to `typeinfo for int' /var/tmp/petsc-2v0k4k61/config.compilers/confc.o:(.toc+0x18): undefined reference to `std::cout' /var/tmp/petsc-2v0k4k61/config.compilers/confc.o:(.eh_frame+0x13): undefined reference to `__IBMCPlusPlusExceptionV3' Executing: uname -s stdout: Linux ===== Checking compiler Executing: mpiCC -c -o /var/tmp/petsc-2v0k4k61/config.compilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -+ -std=gnu++14 /var/tmp/petsc-2v0k4k61/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} ===== Checking linker Executing: mpifort -c -o /var/tmp/petsc-2v0k4k61/config.compilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -g /var/tmp/petsc-2v0k4k61/config.compilers/conftest.F90 Possible ERROR while running compiler: stderr: ** main === End of Compilation 1 === 1501-510 Compilation successful for file conftest.F90. Source: program main print*,'testing' stop end Executing: mpifort -o /var/tmp/petsc-2v0k4k61/config.compilers/conftest -g /var/tmp/petsc-2v0k4k61/config.compilers/conftest.o /var/tmp/petsc-2v0k4k61/config.compilers/confc.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /var/tmp/petsc-2v0k4k61/config.compilers/confc.o: In function `asub()': /var/tmp/petsc-2v0k4k61/config.compilers/conftest.cc:7: undefined reference to `__xlc_catch_match' /var/tmp/petsc-2v0k4k61/config.compilers/confc.o:(.eh_frame+0x13): undefined reference to `__IBMCPlusPlusExceptionV3' C++ code cannot directly be linked with FC linker, therefore will determine needed C++ libraries Executing: mpiCC -c -o /var/tmp/petsc-2v0k4k61/config.compilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -+ -std=gnu++14 /var/tmp/petsc-2v0k4k61/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpiCC -o /var/tmp/petsc-2v0k4k61/config.compilers/conftest -v -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -+ /var/tmp/petsc-2v0k4k61/config.compilers/conftest.o -ldl stdout: exec: export(export,XL_CONFIG=/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlC/16.1.1/etc/xlc.cfg.rhel.7.6.gcc.4.9.3.cuda.11.1.1.v100:xlC_r,NULL) exec: /usr/bin/ld(/usr/bin/ld,--eh-frame-hdr,-Qy,-melf64lppc,-dynamic-linker,/lib64/ld64.so.2,-L/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib,-L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/lib,-L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/lib,-L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/lib,-L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/lib,-L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/zlib-1.2.11-ihbbjg5iizrwf3lssqnrmlcor5ukl336/lib,-L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/lib,-L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/lib,-L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/lib64,/lib/../lib64/crt1.o,/lib/../lib64/crti.o,/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64/gcc/powerpc64le-unknown-linux-gnu/4.9.3/crtbegin.o,-L/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlsmp/5.1.1/lib,-L/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlmass/9.1.1/lib,-L/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlC/16.1.1/lib,-R/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/lib,-L/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64/gcc/powerpc64le-unknown-linux-gnu/4.9.3,-L/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64/gcc/powerpc64le-unknown-linux-gnu/4.9.3/../../../../lib64,-L/lib/../lib64,-L/usr/lib/../lib64,-L/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64/gcc/powerpc64le-unknown-linux-gnu/4.9.3/../../..,-R/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib:/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64,-o,/var/tmp/petsc-2v0k4k61/config.compilers/conftest,/var/tmp/petsc-2v0k4k61/config.compilers/conftest.o,-ldl,-rpath,/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib,-lmpiprofilesupport,-lmpi_ibm,-lxlopt,-lxl,-libmc++,-lstdc++,-lm,--as-needed,-ldl,--no-as-needed,-lgcc_s,-lgcc,--as-needed,-lpthread,--no-as-needed,-lm,-lc,-lgcc_s,-lgcc,/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64/gcc/powerpc64le-unknown-linux-gnu/4.9.3/crtend.o,/lib/../lib64/crtn.o,NULL) unlink: /var/tmp/xlcW0cyLfOH unlink: /var/tmp/xlcW19f3MfT unlink: /var/tmp/xlcW2SChkH4 compilers: Checking arg exec: compilers: Unknown arg exec: compilers: Checking arg export(export compilers: Unknown arg export(export compilers: Checking arg XL_CONFIG=/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlC/16.1.1/etc/xlc.cfg.rhel.7.6.gcc.4.9.3.cuda.11.1.1.v100:xlC_r compilers: Unknown arg XL_CONFIG=/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlC/16.1.1/etc/xlc.cfg.rhel.7.6.gcc.4.9.3.cuda.11.1.1.v100:xlC_r compilers: Checking arg NULL) compilers: Unknown arg NULL) compilers: Checking arg exec: compilers: Unknown arg exec: compilers: Checking arg /usr/bin/ld(/usr/bin/ld compilers: Unknown arg /usr/bin/ld(/usr/bin/ld compilers: Checking arg --eh-frame-hdr compilers: Unknown arg --eh-frame-hdr compilers: Checking arg -Qy compilers: Unknown arg -Qy compilers: Checking arg -melf64lppc compilers: Unknown arg -melf64lppc compilers: Checking arg -dynamic-linker compilers: Unknown arg -dynamic-linker compilers: Checking arg /lib64/ld64.so.2 compilers: Unknown arg /lib64/ld64.so.2 compilers: Checking arg -L/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib compilers: Found library directory: -L/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib compilers: Checking arg -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/lib compilers: Found library directory: -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/lib compilers: Checking arg -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/lib compilers: Found library directory: -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/lib compilers: Checking arg -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/lib compilers: Found library directory: -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/lib compilers: Checking arg -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/lib compilers: Found library directory: -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/lib compilers: Checking arg -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/zlib-1.2.11-ihbbjg5iizrwf3lssqnrmlcor5ukl336/lib compilers: Found library directory: -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/zlib-1.2.11-ihbbjg5iizrwf3lssqnrmlcor5ukl336/lib compilers: Checking arg -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/lib compilers: Found library directory: -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/lib compilers: Checking arg -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/lib compilers: Found library directory: -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/lib compilers: Checking arg -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/lib64 compilers: Found library directory: -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/lib64 compilers: Checking arg /lib/../lib64/crt1.o compilers: Unknown arg /lib/../lib64/crt1.o compilers: Checking arg /lib/../lib64/crti.o compilers: Unknown arg /lib/../lib64/crti.o compilers: Checking arg /usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64/gcc/powerpc64le-unknown-linux-gnu/4.9.3/crtbegin.o compilers: Unknown arg /usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64/gcc/powerpc64le-unknown-linux-gnu/4.9.3/crtbegin.o compilers: Checking arg -L/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlsmp/5.1.1/lib compilers: Found library directory: -L/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlsmp/5.1.1/lib compilers: Checking arg -L/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlmass/9.1.1/lib compilers: Found library directory: -L/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlmass/9.1.1/lib compilers: Checking arg -L/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlC/16.1.1/lib compilers: Found library directory: -L/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlC/16.1.1/lib compilers: Checking arg -R/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/lib compilers: Found -R library: /usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/lib compilers: Checking arg -L/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64/gcc/powerpc64le-unknown-linux-gnu/4.9.3 compilers: Found library directory: -L/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64/gcc/powerpc64le-unknown-linux-gnu/4.9.3 compilers: Checking arg -L/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64/gcc/powerpc64le-unknown-linux-gnu/4.9.3/../../../../lib64 compilers: Found library directory: -L/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64 compilers: Checking arg -L/lib/../lib64 compilers: Checking arg -L/usr/lib/../lib64 compilers: Checking arg -L/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64/gcc/powerpc64le-unknown-linux-gnu/4.9.3/../../.. compilers: Checking arg -R/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib:/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64 compilers: Found -R library: /usr/tce/packages/gcc/gcc-4.9.3/gnu/lib:/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64 compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /var/tmp/petsc-2v0k4k61/config.compilers/conftest compilers: Unknown arg /var/tmp/petsc-2v0k4k61/config.compilers/conftest compilers: Checking arg /var/tmp/petsc-2v0k4k61/config.compilers/conftest.o compilers: Unknown arg /var/tmp/petsc-2v0k4k61/config.compilers/conftest.o compilers: Checking arg -ldl compilers: Found library: -ldl compilers: Checking arg -rpath compilers: Found -rpath library: /usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib compilers: Checking arg -lmpiprofilesupport compilers: Found library: -lmpiprofilesupport compilers: Checking arg -lmpi_ibm compilers: Found library: -lmpi_ibm compilers: Checking arg -lxlopt compilers: Found library: -lxlopt compilers: Checking arg -lxl compilers: Found library: -lxl compilers: Checking arg -libmc++ compilers: Found library: -libmc++ compilers: Checking arg -lstdc++ compilers: Found library: -lstdc++ compilers: Checking arg -lm compilers: Found library: -lm compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -ldl compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg -lgcc_s compilers: Found library: -lgcc_s compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lpthread compilers: Found library: -lpthread compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg -lm compilers: Checking arg -lc compilers: Skipping system library: -lc compilers: Checking arg -lgcc_s compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg /usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64/gcc/powerpc64le-unknown-linux-gnu/4.9.3/crtend.o compilers: Unknown arg /usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64/gcc/powerpc64le-unknown-linux-gnu/4.9.3/crtend.o compilers: Checking arg /lib/../lib64/crtn.o compilers: Unknown arg /lib/../lib64/crtn.o compilers: Checking arg NULL) compilers: Unknown arg NULL) compilers: Checking arg unlink: compilers: Unknown arg unlink: compilers: Checking arg /var/tmp/xlcW0cyLfOH compilers: Unknown arg /var/tmp/xlcW0cyLfOH compilers: Checking arg unlink: compilers: Unknown arg unlink: compilers: Checking arg /var/tmp/xlcW19f3MfT compilers: Unknown arg /var/tmp/xlcW19f3MfT compilers: Checking arg unlink: compilers: Unknown arg unlink: compilers: Checking arg /var/tmp/xlcW2SChkH4 compilers: Unknown arg /var/tmp/xlcW2SChkH4 compilers: Libraries needed to link Cxx code with another linker: ['-Wl,-rpath,/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib', '-L/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib', '-Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/lib', '-L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/lib', '-Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/lib', '-L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/lib', '-Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/lib', '-L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/lib', '-Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/lib', '-L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/lib', '-Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/zlib-1.2.11-ihbbjg5iizrwf3lssqnrmlcor5ukl336/lib', '-L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/zlib-1.2.11-ihbbjg5iizrwf3lssqnrmlcor5ukl336/lib', '-Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/lib', '-L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/lib', '-Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/lib', '-L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/lib', '-Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/lib64', '-L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/lib64', '-Wl,-rpath,/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlsmp/5.1.1/lib', '-L/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlsmp/5.1.1/lib', '-Wl,-rpath,/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlmass/9.1.1/lib', '-L/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlmass/9.1.1/lib', '-Wl,-rpath,/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlC/16.1.1/lib', '-L/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlC/16.1.1/lib', '-Wl,-rpath,/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/lib', '-Wl,-rpath,/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64/gcc/powerpc64le-unknown-linux-gnu/4.9.3', '-L/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64/gcc/powerpc64le-unknown-linux-gnu/4.9.3', '-Wl,-rpath,/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64', '-L/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64', '-Wl,-rpath,/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib:/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64', '-ldl', '-Wl,-rpath,/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib', '-lmpiprofilesupport', '-lmpi_ibm', '-lxlopt', '-lxl', '-libmc++', '-lstdc++', '-lm', '-lgcc_s', '-lpthread'] compilers: Check that Cxx libraries can be used with C as linker ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -Wl,-rpath,/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib -L/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/zlib-1.2.11-ihbbjg5iizrwf3lssqnrmlcor5ukl336/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/zlib-1.2.11-ihbbjg5iizrwf3lssqnrmlcor5ukl336/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/lib64 -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/lib64 -Wl,-rpath,/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlsmp/5.1.1/lib -L/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlsmp/5.1.1/lib -Wl,-rpath,/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlmass/9.1.1/lib -L/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlmass/9.1.1/lib -Wl,-rpath,/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlC/16.1.1/lib -L/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlC/16.1.1/lib -Wl,-rpath,/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/lib -Wl,-rpath,/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64/gcc/powerpc64le-unknown-linux-gnu/4.9.3 -L/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64/gcc/powerpc64le-unknown-linux-gnu/4.9.3 -Wl,-rpath,/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64 -L/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64 -Wl,-rpath,/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib:/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64 -ldl -Wl,-rpath,/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib -lmpiprofilesupport -lmpi_ibm -lxlopt -lxl -libmc++ -lstdc++ -lm -lgcc_s -lpthread -ldl ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -Wl,-rpath,/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib -L/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/zlib-1.2.11-ihbbjg5iizrwf3lssqnrmlcor5ukl336/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/zlib-1.2.11-ihbbjg5iizrwf3lssqnrmlcor5ukl336/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/lib64 -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/lib64 -Wl,-rpath,/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlsmp/5.1.1/lib -L/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlsmp/5.1.1/lib -Wl,-rpath,/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlmass/9.1.1/lib -L/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlmass/9.1.1/lib -Wl,-rpath,/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlC/16.1.1/lib -L/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlC/16.1.1/lib -Wl,-rpath,/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/lib -Wl,-rpath,/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64/gcc/powerpc64le-unknown-linux-gnu/4.9.3 -L/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64/gcc/powerpc64le-unknown-linux-gnu/4.9.3 -Wl,-rpath,/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64 -L/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64 -Wl,-rpath,/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib:/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64 -ldl -Wl,-rpath,/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib -lmpiprofilesupport -lmpi_ibm -lxlopt -lxl -libmc++ -lstdc++ -lm -lgcc_s -lpthread -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm ======== Checking running linked program ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -Wl,-rpath,/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib -L/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/zlib-1.2.11-ihbbjg5iizrwf3lssqnrmlcor5ukl336/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/zlib-1.2.11-ihbbjg5iizrwf3lssqnrmlcor5ukl336/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/lib64 -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/lib64 -Wl,-rpath,/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlsmp/5.1.1/lib -L/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlsmp/5.1.1/lib -Wl,-rpath,/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlmass/9.1.1/lib -L/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlmass/9.1.1/lib -Wl,-rpath,/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlC/16.1.1/lib -L/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlC/16.1.1/lib -Wl,-rpath,/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/lib -Wl,-rpath,/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64/gcc/powerpc64le-unknown-linux-gnu/4.9.3 -L/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64/gcc/powerpc64le-unknown-linux-gnu/4.9.3 -Wl,-rpath,/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64 -L/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64 -Wl,-rpath,/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib:/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64 -ldl -Wl,-rpath,/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib -lmpiprofilesupport -lmpi_ibm -lxlopt -lxl -libmc++ -lstdc++ -lm -lgcc_s -lpthread -ldl Testing executable /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest to see if it can be run Executing: /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest compilers: Check that Cxx libraries can be used with Fortran as linker ===== Checking compiler Executing: mpifort -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -g /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.F90 Possible ERROR while running compiler: stderr: ** main === End of Compilation 1 === 1501-510 Compilation successful for file conftest.F90. Source: program main end ===== Checking linker Executing: mpifort -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -g /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.F90 Possible ERROR while running compiler: stderr: ** main === End of Compilation 1 === 1501-510 Compilation successful for file conftest.F90. Source: program main end Executing: mpifort -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest -g /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -Wl,-rpath,/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib -L/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/zlib-1.2.11-ihbbjg5iizrwf3lssqnrmlcor5ukl336/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/zlib-1.2.11-ihbbjg5iizrwf3lssqnrmlcor5ukl336/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/lib64 -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/lib64 -Wl,-rpath,/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlsmp/5.1.1/lib -L/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlsmp/5.1.1/lib -Wl,-rpath,/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlmass/9.1.1/lib -L/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlmass/9.1.1/lib -Wl,-rpath,/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlC/16.1.1/lib -L/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlC/16.1.1/lib -Wl,-rpath,/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/lib -Wl,-rpath,/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64/gcc/powerpc64le-unknown-linux-gnu/4.9.3 -L/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64/gcc/powerpc64le-unknown-linux-gnu/4.9.3 -Wl,-rpath,/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64 -L/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64 -Wl,-rpath,/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib:/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64 -ldl -Wl,-rpath,/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib -lmpiprofilesupport -lmpi_ibm -lxlopt -lxl -libmc++ -lstdc++ -lm -lgcc_s -lpthread -ldl ===== Checking linker Executing: mpifort -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -g /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.F90 Possible ERROR while running compiler: stderr: ** main === End of Compilation 1 === 1501-510 Compilation successful for file conftest.F90. Source: program main end Executing: mpifort -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest -g /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -Wl,-rpath,/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib -L/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/zlib-1.2.11-ihbbjg5iizrwf3lssqnrmlcor5ukl336/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/zlib-1.2.11-ihbbjg5iizrwf3lssqnrmlcor5ukl336/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/lib64 -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/lib64 -Wl,-rpath,/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlsmp/5.1.1/lib -L/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlsmp/5.1.1/lib -Wl,-rpath,/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlmass/9.1.1/lib -L/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlmass/9.1.1/lib -Wl,-rpath,/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlC/16.1.1/lib -L/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlC/16.1.1/lib -Wl,-rpath,/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/lib -Wl,-rpath,/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64/gcc/powerpc64le-unknown-linux-gnu/4.9.3 -L/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64/gcc/powerpc64le-unknown-linux-gnu/4.9.3 -Wl,-rpath,/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64 -L/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64 -Wl,-rpath,/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib:/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64 -ldl -Wl,-rpath,/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib -lmpiprofilesupport -lmpi_ibm -lxlopt -lxl -libmc++ -lstdc++ -lm -lgcc_s -lpthread -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm ======== Checking running linked program ===== Checking linker Executing: mpifort -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -g /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.F90 Possible ERROR while running compiler: stderr: ** main === End of Compilation 1 === 1501-510 Compilation successful for file conftest.F90. Source: program main end Executing: mpifort -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest -g /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -Wl,-rpath,/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib -L/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/zlib-1.2.11-ihbbjg5iizrwf3lssqnrmlcor5ukl336/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/zlib-1.2.11-ihbbjg5iizrwf3lssqnrmlcor5ukl336/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/lib64 -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/lib64 -Wl,-rpath,/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlsmp/5.1.1/lib -L/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlsmp/5.1.1/lib -Wl,-rpath,/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlmass/9.1.1/lib -L/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlmass/9.1.1/lib -Wl,-rpath,/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlC/16.1.1/lib -L/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlC/16.1.1/lib -Wl,-rpath,/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/lib -Wl,-rpath,/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64/gcc/powerpc64le-unknown-linux-gnu/4.9.3 -L/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64/gcc/powerpc64le-unknown-linux-gnu/4.9.3 -Wl,-rpath,/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64 -L/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64 -Wl,-rpath,/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib:/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64 -ldl -Wl,-rpath,/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib -lmpiprofilesupport -lmpi_ibm -lxlopt -lxl -libmc++ -lstdc++ -lm -lgcc_s -lpthread -ldl Testing executable /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest to see if it can be run Executing: /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest Executing: mpiCC -V stdout: export XL_CONFIG=/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlC/16.1.1/etc/xlc.cfg.rhel.7.6.gcc.4.9.3.cuda.11.1.1.v100:xlC_r rm /var/tmp/xlcW0GYddvk rm /var/tmp/xlcW1TauGUx rm /var/tmp/xlcW2OYB9jL ============================================================================================= TESTING: checkFortranNameMangling from config.compilers(config/BuildSystem/config/compilers.py:860) Checks Fortran name mangling, and defines HAVE_FORTRAN_UNDERSCORE, HAVE_FORTRAN_NOUNDERSCORE, HAVE_FORTRAN_CAPS Testing Fortran mangling type underscore with code void d1chk_(void){return;} ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.compilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1chk_(void){return;} ===== Checking linker Executing: mpifort -c -o /var/tmp/petsc-2v0k4k61/config.compilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -g /var/tmp/petsc-2v0k4k61/config.compilers/conftest.F90 Possible ERROR while running compiler: stderr: ** main === End of Compilation 1 === 1501-510 Compilation successful for file conftest.F90. Source: program main call d1chk() end Executing: mpifort -o /var/tmp/petsc-2v0k4k61/config.compilers/conftest -g /var/tmp/petsc-2v0k4k61/config.compilers/conftest.o /var/tmp/petsc-2v0k4k61/config.compilers/confc.o -ldl Possible ERROR while running linker: exit code 1 stderr: /var/tmp/petsc-2v0k4k61/config.compilers/conftest.o: In function `main': /var/tmp/petsc-2v0k4k61/config.compilers/conftest.F90:2: undefined reference to `d1chk' Testing Fortran mangling type unchanged with code void d1chk(void){return;} ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.compilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1chk(void){return;} ===== Checking linker Executing: mpifort -c -o /var/tmp/petsc-2v0k4k61/config.compilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -g /var/tmp/petsc-2v0k4k61/config.compilers/conftest.F90 Possible ERROR while running compiler: stderr: ** main === End of Compilation 1 === 1501-510 Compilation successful for file conftest.F90. Source: program main call d1chk() end Executing: mpifort -o /var/tmp/petsc-2v0k4k61/config.compilers/conftest -g /var/tmp/petsc-2v0k4k61/config.compilers/conftest.o /var/tmp/petsc-2v0k4k61/config.compilers/confc.o -ldl compilers: Fortran name mangling is unchanged Defined "HAVE_FORTRAN_NOUNDERSCORE" to "1" Executing: mpifort --version Defined "FORTRAN_CHARLEN_T" to "int" ============================================================================================= TESTING: checkFortranNameManglingDouble from config.compilers(config/BuildSystem/config/compilers.py:898) Checks if symbols containing an underscore append an extra underscore, and defines HAVE_FORTRAN_UNDERSCORE_UNDERSCORE if necessary ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.compilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1_chk__(void){return;} ===== Checking linker Executing: mpifort -c -o /var/tmp/petsc-2v0k4k61/config.compilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -g /var/tmp/petsc-2v0k4k61/config.compilers/conftest.F90 Possible ERROR while running compiler: stderr: ** main === End of Compilation 1 === 1501-510 Compilation successful for file conftest.F90. Source: program main call d1_chk() end Executing: mpifort -o /var/tmp/petsc-2v0k4k61/config.compilers/conftest -g /var/tmp/petsc-2v0k4k61/config.compilers/conftest.o /var/tmp/petsc-2v0k4k61/config.compilers/confc.o -ldl Possible ERROR while running linker: exit code 1 stderr: /var/tmp/petsc-2v0k4k61/config.compilers/conftest.o: In function `main': /var/tmp/petsc-2v0k4k61/config.compilers/conftest.F90:2: undefined reference to `d1_chk' ============================================================================================= TESTING: checkFortranLibraries from config.compilers(config/BuildSystem/config/compilers.py:908) Substitutes for FLIBS the libraries needed to link with Fortran This macro is intended to be used in those situations when it is necessary to mix, e.g. C++ and Fortran 77, source code into a single program or shared library. For example, if object files from a C++ and Fortran 77 compiler must be linked together, then the C++ compiler/linker must be used for linking (since special C++-ish things need to happen at link time like calling global constructors, instantiating templates, enabling exception support, etc.). However, the Fortran 77 intrinsic and run-time libraries must be linked in as well, but the C++ compiler/linker does not know how to add these Fortran 77 libraries. This code was translated from the autoconf macro which was packaged in its current form by Matthew D. Langston . However, nearly all of this macro came from the OCTAVE_FLIBS macro in octave-2.0.13/aclocal.m4, and full credit should go to John W. Eaton for writing this extremely useful macro. ===== Checking linker Executing: mpifort -c -o /var/tmp/petsc-2v0k4k61/config.compilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -g /var/tmp/petsc-2v0k4k61/config.compilers/conftest.F90 Possible ERROR while running compiler: stderr: ** main === End of Compilation 1 === 1501-510 Compilation successful for file conftest.F90. Source: program main #include call MPI_Allreduce() end Executing: mpifort -o /var/tmp/petsc-2v0k4k61/config.compilers/conftest -g /var/tmp/petsc-2v0k4k61/config.compilers/conftest.o -ldl ===== Checking compiler Executing: mpifort -c -o /var/tmp/petsc-2v0k4k61/config.compilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -g /var/tmp/petsc-2v0k4k61/config.compilers/conftest.F90 Possible ERROR while running compiler: stderr: ** asub === End of Compilation 1 === 1501-510 Compilation successful for file conftest.F90. Source: subroutine asub() print*,'testing' call MPI_Allreduce() return end ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.compilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern void asub(void); int main(int argc,char **args) { asub(); return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.compilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.compilers/conftest.o /var/tmp/petsc-2v0k4k61/config.compilers/confc.o -ldl Possible ERROR while running linker: exit code 1 stderr: /var/tmp/petsc-2v0k4k61/config.compilers/confc.o: In function `asub': /var/tmp/petsc-2v0k4k61/config.compilers/conftest.F90:2: undefined reference to `_xlfBeginIO' /var/tmp/petsc-2v0k4k61/config.compilers/conftest.F90:2: undefined reference to `_xlfWriteLDChar' /var/tmp/petsc-2v0k4k61/config.compilers/conftest.F90:2: undefined reference to `_xlfEndIO' /var/tmp/petsc-2v0k4k61/config.compilers/conftest.F90:3: undefined reference to `mpi_allreduce' Fortran code cannot directly be linked with C linker, therefore will determine needed Fortran libraries Executing: mpifort -c -o /var/tmp/petsc-2v0k4k61/config.compilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -g /var/tmp/petsc-2v0k4k61/config.compilers/conftest.F90 Possible ERROR while running compiler: stderr: ** main === End of Compilation 1 === 1501-510 Compilation successful for file conftest.F90. Source: program main end Executing: mpifort -o /var/tmp/petsc-2v0k4k61/config.compilers/conftest -v -g /var/tmp/petsc-2v0k4k61/config.compilers/conftest.o -ldl stdout: exec: export(export,XL_CONFIG=/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlf/16.1.1/etc/xlf.cfg.rhel.7.6.gcc.4.9.3.cuda.11.1.1.v100:xlf_r,NULL) exec: /usr/bin/ld(ld,--eh-frame-hdr,-Qy,-melf64lppc,-dynamic-linker,/lib64/ld64.so.2,-L/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib,-L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/lib,-L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/lib,-L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/lib,-L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/lib,-L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/zlib-1.2.11-ihbbjg5iizrwf3lssqnrmlcor5ukl336/lib,-L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/lib,-L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/lib,-L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/lib64,/lib/../lib64/crt1.o,/lib/../lib64/crti.o,/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64/gcc/powerpc64le-unknown-linux-gnu/4.9.3/crtbegin.o,-L/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlsmp/5.1.1/lib,-L/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlmass/9.1.1/lib,-L/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlf/16.1.1/lib,-R/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/lib,-L/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64/gcc/powerpc64le-unknown-linux-gnu/4.9.3,-L/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64/gcc/powerpc64le-unknown-linux-gnu/4.9.3/../../../../lib64,-L/lib/../lib64,-L/usr/lib/../lib64,-L/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64/gcc/powerpc64le-unknown-linux-gnu/4.9.3/../../..,-R/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib:/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64,--no-toc-optimize,--no-toc-optimize,--no-toc-optimize,--no-toc-optimize,--no-toc-optimize,--no-toc-optimize,-o,/var/tmp/petsc-2v0k4k61/config.compilers/conftest,/var/tmp/petsc-2v0k4k61/config.compilers/conftest.o,-ldl,-rpath,/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib,-lmpiprofilesupport,-lmpi_ibm_usempi,-lmpi_ibm_mpifh,-lmpi_ibm,-lxlf90_r,-lxlopt,-lxlomp_ser,-lxl,-lxlfmath,-lgcc_s,-ldl,-lrt,-lpthread,-lgcc,-lm,-lc,-lgcc_s,-lgcc,/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64/gcc/powerpc64le-unknown-linux-gnu/4.9.3/crtend.o,/lib/../lib64/crtn.o,NULL) | exec: /usr/bin/awk(/usr/bin/awk,BEGIN{a=0;b=0;s=""};{if(($0!~/.*-224.*@TP.*/)&&($0!~/.*-34[45].*loadmap.*/||b==1||a==0)){b=1;print $0;}else{a=1;if((s=="")&& $0 ~ /.*-34[45].*loadmap.*/){s=$0}}};END{if(b==1 && s!=""){print s}},NULL) unlink: /var/tmp/optf.125891GkQEiX compilers: Checking arg exec: compilers: Unknown arg exec: compilers: Checking arg export(export compilers: Unknown arg export(export compilers: Checking arg XL_CONFIG=/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlf/16.1.1/etc/xlf.cfg.rhel.7.6.gcc.4.9.3.cuda.11.1.1.v100:xlf_r compilers: Unknown arg XL_CONFIG=/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlf/16.1.1/etc/xlf.cfg.rhel.7.6.gcc.4.9.3.cuda.11.1.1.v100:xlf_r compilers: Checking arg NULL) compilers: Unknown arg NULL) compilers: Checking arg exec: compilers: Unknown arg exec: compilers: Checking arg /usr/bin/ld(ld compilers: Unknown arg /usr/bin/ld(ld compilers: Checking arg --eh-frame-hdr compilers: Unknown arg --eh-frame-hdr compilers: Checking arg -Qy compilers: Unknown arg -Qy compilers: Checking arg -melf64lppc compilers: Unknown arg -melf64lppc compilers: Checking arg -dynamic-linker compilers: Unknown arg -dynamic-linker compilers: Checking arg /lib64/ld64.so.2 compilers: Unknown arg /lib64/ld64.so.2 compilers: Checking arg -L/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib compilers: Found library directory: -L/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib compilers: Checking arg -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/lib compilers: Found library directory: -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/lib compilers: Checking arg -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/lib compilers: Found library directory: -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/lib compilers: Checking arg -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/lib compilers: Found library directory: -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/lib compilers: Checking arg -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/lib compilers: Found library directory: -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/lib compilers: Checking arg -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/zlib-1.2.11-ihbbjg5iizrwf3lssqnrmlcor5ukl336/lib compilers: Found library directory: -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/zlib-1.2.11-ihbbjg5iizrwf3lssqnrmlcor5ukl336/lib compilers: Checking arg -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/lib compilers: Found library directory: -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/lib compilers: Checking arg -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/lib compilers: Found library directory: -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/lib compilers: Checking arg -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/lib64 compilers: Found library directory: -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/lib64 compilers: Checking arg /lib/../lib64/crt1.o compilers: Unknown arg /lib/../lib64/crt1.o compilers: Checking arg /lib/../lib64/crti.o compilers: Unknown arg /lib/../lib64/crti.o compilers: Checking arg /usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64/gcc/powerpc64le-unknown-linux-gnu/4.9.3/crtbegin.o compilers: Unknown arg /usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64/gcc/powerpc64le-unknown-linux-gnu/4.9.3/crtbegin.o compilers: Checking arg -L/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlsmp/5.1.1/lib compilers: Found library directory: -L/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlsmp/5.1.1/lib compilers: Checking arg -L/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlmass/9.1.1/lib compilers: Found library directory: -L/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlmass/9.1.1/lib compilers: Checking arg -L/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlf/16.1.1/lib compilers: Found library directory: -L/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlf/16.1.1/lib compilers: Checking arg -R/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/lib compilers: Found -R library: /usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/lib compilers: Checking arg -L/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64/gcc/powerpc64le-unknown-linux-gnu/4.9.3 compilers: Found library directory: -L/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64/gcc/powerpc64le-unknown-linux-gnu/4.9.3 compilers: Checking arg -L/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64/gcc/powerpc64le-unknown-linux-gnu/4.9.3/../../../../lib64 compilers: Found library directory: -L/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64 compilers: Checking arg -L/lib/../lib64 compilers: Checking arg -L/usr/lib/../lib64 compilers: Checking arg -L/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64/gcc/powerpc64le-unknown-linux-gnu/4.9.3/../../.. compilers: Already in lflags so skipping: -L/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64 compilers: Checking arg -R/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib:/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64 compilers: Found -R library: /usr/tce/packages/gcc/gcc-4.9.3/gnu/lib:/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64 compilers: Checking arg --no-toc-optimize compilers: Unknown arg --no-toc-optimize compilers: Checking arg --no-toc-optimize compilers: Unknown arg --no-toc-optimize compilers: Checking arg --no-toc-optimize compilers: Unknown arg --no-toc-optimize compilers: Checking arg --no-toc-optimize compilers: Unknown arg --no-toc-optimize compilers: Checking arg --no-toc-optimize compilers: Unknown arg --no-toc-optimize compilers: Checking arg --no-toc-optimize compilers: Unknown arg --no-toc-optimize compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /var/tmp/petsc-2v0k4k61/config.compilers/conftest compilers: Unknown arg /var/tmp/petsc-2v0k4k61/config.compilers/conftest compilers: Checking arg /var/tmp/petsc-2v0k4k61/config.compilers/conftest.o compilers: Unknown arg /var/tmp/petsc-2v0k4k61/config.compilers/conftest.o compilers: Checking arg -ldl compilers: Found library: -ldl compilers: Checking arg -rpath compilers: Found -rpath library: /usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib compilers: Checking arg -lmpiprofilesupport compilers: Found library: -lmpiprofilesupport compilers: Checking arg -lmpi_ibm_usempi compilers: Found library: -lmpi_ibm_usempi compilers: Checking arg -lmpi_ibm_mpifh compilers: Found library: -lmpi_ibm_mpifh compilers: Checking arg -lmpi_ibm compilers: Found library: -lmpi_ibm compilers: Checking arg -lxlf90_r compilers: Found library: -lxlf90_r compilers: Checking arg -lxlopt compilers: Found library: -lxlopt compilers: Checking arg -lxlomp_ser compilers: Found system library therefore skipping: -lxlomp_ser compilers: Checking arg -lxl compilers: Found library: -lxl compilers: Checking arg -lxlfmath compilers: Found library: -lxlfmath compilers: Checking arg -lgcc_s compilers: Found library: -lgcc_s compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -lrt compilers: Found library: -lrt compilers: Checking arg -lpthread compilers: Found library: -lpthread compilers: Checking arg -lgcc compilers: Found system library therefore skipping: -lgcc compilers: Checking arg -lm compilers: Found library: -lm compilers: Checking arg -lc compilers: Found system library therefore skipping: -lc compilers: Checking arg -lgcc_s compilers: Already in lflags: -lgcc_s compilers: Checking arg -lgcc compilers: Found system library therefore skipping: -lgcc compilers: Checking arg /usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64/gcc/powerpc64le-unknown-linux-gnu/4.9.3/crtend.o compilers: Unknown arg /usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64/gcc/powerpc64le-unknown-linux-gnu/4.9.3/crtend.o compilers: Checking arg /lib/../lib64/crtn.o compilers: Unknown arg /lib/../lib64/crtn.o compilers: Checking arg NULL) compilers: Unknown arg NULL) compilers: Checking arg | compilers: Unknown arg | compilers: Checking arg exec: compilers: Unknown arg exec: compilers: Checking arg /usr/bin/awk(/usr/bin/awk compilers: Unknown arg /usr/bin/awk(/usr/bin/awk compilers: Checking arg BEGIN{a=0;b=0;s=""};{if(($0!~/.*-224.*@TP.*/)&&($0!~/.*-34[45].*loadmap.*/||b==1||a==0)){b=1;print compilers: Unknown arg BEGIN{a=0;b=0;s=""};{if(($0!~/.*-224.*@TP.*/)&&($0!~/.*-34[45].*loadmap.*/||b==1||a==0)){b=1;print compilers: Checking arg $0;}else{a=1;if((s=="")&& compilers: Unknown arg $0;}else{a=1;if((s=="")&& compilers: Checking arg $0 compilers: Unknown arg $0 compilers: Checking arg ~ compilers: Unknown arg ~ compilers: Checking arg /.*-34[45].*loadmap.*/){s=$0}}};END{if(b==1 compilers: Unknown arg /.*-34[45].*loadmap.*/){s=$0}}};END{if(b==1 compilers: Checking arg && compilers: Unknown arg && compilers: Checking arg s!=""){print compilers: Unknown arg s!=""){print compilers: Checking arg s}} compilers: Unknown arg s}} compilers: Checking arg NULL) compilers: Unknown arg NULL) compilers: Checking arg unlink: compilers: Unknown arg unlink: compilers: Checking arg /var/tmp/optf.125891GkQEiX compilers: Unknown arg /var/tmp/optf.125891GkQEiX compilers: Libraries needed to link Fortran code with the C linker: ['-Wl,-rpath,/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib', '-L/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib', '-Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/lib', '-L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/lib', '-Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/lib', '-L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/lib', '-Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/lib', '-L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/lib', '-Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/lib', '-L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/lib', '-Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/zlib-1.2.11-ihbbjg5iizrwf3lssqnrmlcor5ukl336/lib', '-L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/zlib-1.2.11-ihbbjg5iizrwf3lssqnrmlcor5ukl336/lib', '-Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/lib', '-L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/lib', '-Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/lib', '-L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/lib', '-Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/lib64', '-L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/lib64', '-Wl,-rpath,/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlsmp/5.1.1/lib', '-L/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlsmp/5.1.1/lib', '-Wl,-rpath,/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlmass/9.1.1/lib', '-L/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlmass/9.1.1/lib', '-Wl,-rpath,/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlf/16.1.1/lib', '-L/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlf/16.1.1/lib', '-Wl,-rpath,/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/lib', '-Wl,-rpath,/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64/gcc/powerpc64le-unknown-linux-gnu/4.9.3', '-L/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64/gcc/powerpc64le-unknown-linux-gnu/4.9.3', '-Wl,-rpath,/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64', '-L/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64', '-Wl,-rpath,/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib:/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64', '-ldl', '-Wl,-rpath,/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib', '-lmpiprofilesupport', '-lmpi_ibm_usempi', '-lmpi_ibm_mpifh', '-lmpi_ibm', '-lxlf90_r', '-lxlopt', '-lxl', '-lxlfmath', '-lgcc_s', '-lrt', '-lpthread', '-lm'] compilers: Libraries needed to link Fortran main with the C linker: [] compilers: Check that Fortran libraries can be used with C as the linker ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -Wl,-rpath,/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib -L/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/zlib-1.2.11-ihbbjg5iizrwf3lssqnrmlcor5ukl336/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/zlib-1.2.11-ihbbjg5iizrwf3lssqnrmlcor5ukl336/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/lib64 -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/lib64 -Wl,-rpath,/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlsmp/5.1.1/lib -L/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlsmp/5.1.1/lib -Wl,-rpath,/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlmass/9.1.1/lib -L/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlmass/9.1.1/lib -Wl,-rpath,/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlf/16.1.1/lib -L/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlf/16.1.1/lib -Wl,-rpath,/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/lib -Wl,-rpath,/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64/gcc/powerpc64le-unknown-linux-gnu/4.9.3 -L/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64/gcc/powerpc64le-unknown-linux-gnu/4.9.3 -Wl,-rpath,/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64 -L/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64 -Wl,-rpath,/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib:/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64 -ldl -Wl,-rpath,/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib -lmpiprofilesupport -lmpi_ibm_usempi -lmpi_ibm_mpifh -lmpi_ibm -lxlf90_r -lxlopt -lxl -lxlfmath -lgcc_s -lrt -lpthread -lm -ldl ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -Wl,-rpath,/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib -L/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/zlib-1.2.11-ihbbjg5iizrwf3lssqnrmlcor5ukl336/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/zlib-1.2.11-ihbbjg5iizrwf3lssqnrmlcor5ukl336/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/lib64 -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/lib64 -Wl,-rpath,/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlsmp/5.1.1/lib -L/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlsmp/5.1.1/lib -Wl,-rpath,/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlmass/9.1.1/lib -L/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlmass/9.1.1/lib -Wl,-rpath,/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlf/16.1.1/lib -L/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlf/16.1.1/lib -Wl,-rpath,/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/lib -Wl,-rpath,/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64/gcc/powerpc64le-unknown-linux-gnu/4.9.3 -L/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64/gcc/powerpc64le-unknown-linux-gnu/4.9.3 -Wl,-rpath,/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64 -L/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64 -Wl,-rpath,/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib:/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64 -ldl -Wl,-rpath,/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib -lmpiprofilesupport -lmpi_ibm_usempi -lmpi_ibm_mpifh -lmpi_ibm -lxlf90_r -lxlopt -lxl -lxlfmath -lgcc_s -lrt -lpthread -lm -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm ======== Checking running linked program ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -Wl,-rpath,/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib -L/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/zlib-1.2.11-ihbbjg5iizrwf3lssqnrmlcor5ukl336/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/zlib-1.2.11-ihbbjg5iizrwf3lssqnrmlcor5ukl336/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/lib64 -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/lib64 -Wl,-rpath,/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlsmp/5.1.1/lib -L/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlsmp/5.1.1/lib -Wl,-rpath,/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlmass/9.1.1/lib -L/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlmass/9.1.1/lib -Wl,-rpath,/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlf/16.1.1/lib -L/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlf/16.1.1/lib -Wl,-rpath,/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/lib -Wl,-rpath,/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64/gcc/powerpc64le-unknown-linux-gnu/4.9.3 -L/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64/gcc/powerpc64le-unknown-linux-gnu/4.9.3 -Wl,-rpath,/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64 -L/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64 -Wl,-rpath,/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib:/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64 -ldl -Wl,-rpath,/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib -lmpiprofilesupport -lmpi_ibm_usempi -lmpi_ibm_mpifh -lmpi_ibm -lxlf90_r -lxlopt -lxl -lxlfmath -lgcc_s -lrt -lpthread -lm -ldl Testing executable /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest to see if it can be run Executing: /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest compilers: Check that Fortran libraries can be used with C++ as linker compilers: Fortran libraries can be used from C++ ===== Checking compiler Executing: mpiCC -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -+ -std=gnu++14 /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ===== Checking linker Executing: mpiCC -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -+ -std=gnu++14 /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpiCC -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -+ /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -Wl,-rpath,/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib -L/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/zlib-1.2.11-ihbbjg5iizrwf3lssqnrmlcor5ukl336/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/zlib-1.2.11-ihbbjg5iizrwf3lssqnrmlcor5ukl336/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/lib64 -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/lib64 -Wl,-rpath,/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlsmp/5.1.1/lib -L/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlsmp/5.1.1/lib -Wl,-rpath,/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlmass/9.1.1/lib -L/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlmass/9.1.1/lib -Wl,-rpath,/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlf/16.1.1/lib -L/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlf/16.1.1/lib -Wl,-rpath,/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/lib -Wl,-rpath,/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64/gcc/powerpc64le-unknown-linux-gnu/4.9.3 -L/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64/gcc/powerpc64le-unknown-linux-gnu/4.9.3 -Wl,-rpath,/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64 -L/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64 -Wl,-rpath,/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib:/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64 -ldl -Wl,-rpath,/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib -lmpiprofilesupport -lmpi_ibm_usempi -lmpi_ibm_mpifh -lmpi_ibm -lxlf90_r -lxlopt -lxl -lxlfmath -lgcc_s -lrt -lpthread -lm -ldl ===== Checking linker Executing: mpiCC -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -+ -std=gnu++14 /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpiCC -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -+ /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -Wl,-rpath,/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib -L/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/zlib-1.2.11-ihbbjg5iizrwf3lssqnrmlcor5ukl336/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/zlib-1.2.11-ihbbjg5iizrwf3lssqnrmlcor5ukl336/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/lib64 -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/lib64 -Wl,-rpath,/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlsmp/5.1.1/lib -L/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlsmp/5.1.1/lib -Wl,-rpath,/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlmass/9.1.1/lib -L/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlmass/9.1.1/lib -Wl,-rpath,/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlf/16.1.1/lib -L/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlf/16.1.1/lib -Wl,-rpath,/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/lib -Wl,-rpath,/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64/gcc/powerpc64le-unknown-linux-gnu/4.9.3 -L/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64/gcc/powerpc64le-unknown-linux-gnu/4.9.3 -Wl,-rpath,/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64 -L/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64 -Wl,-rpath,/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib:/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64 -ldl -Wl,-rpath,/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib -lmpiprofilesupport -lmpi_ibm_usempi -lmpi_ibm_mpifh -lmpi_ibm -lxlf90_r -lxlopt -lxl -lxlfmath -lgcc_s -lrt -lpthread -lm -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm ======== Checking running linked program ===== Checking linker Executing: mpiCC -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -+ -std=gnu++14 /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpiCC -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -+ /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -Wl,-rpath,/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib -L/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/zlib-1.2.11-ihbbjg5iizrwf3lssqnrmlcor5ukl336/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/zlib-1.2.11-ihbbjg5iizrwf3lssqnrmlcor5ukl336/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/lib -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/lib -Wl,-rpath,/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/lib64 -L/g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/lib64 -Wl,-rpath,/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlsmp/5.1.1/lib -L/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlsmp/5.1.1/lib -Wl,-rpath,/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlmass/9.1.1/lib -L/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlmass/9.1.1/lib -Wl,-rpath,/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlf/16.1.1/lib -L/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlf/16.1.1/lib -Wl,-rpath,/usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/lib -Wl,-rpath,/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64/gcc/powerpc64le-unknown-linux-gnu/4.9.3 -L/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64/gcc/powerpc64le-unknown-linux-gnu/4.9.3 -Wl,-rpath,/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64 -L/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64 -Wl,-rpath,/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib:/usr/tce/packages/gcc/gcc-4.9.3/gnu/lib64 -ldl -Wl,-rpath,/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib -lmpiprofilesupport -lmpi_ibm_usempi -lmpi_ibm_mpifh -lmpi_ibm -lxlf90_r -lxlopt -lxl -lxlfmath -lgcc_s -lrt -lpthread -lm -ldl Testing executable /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest to see if it can be run Executing: /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest ============================================================================================= TESTING: checkFortranLinkingCxx from config.compilers(config/BuildSystem/config/compilers.py:1332) Check that Fortran can link C++ libraries ===== Checking compiler Executing: mpiCC -c -o /var/tmp/petsc-2v0k4k61/config.compilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -+ -std=gnu++14 /var/tmp/petsc-2v0k4k61/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk(void); void foo(void){d1chk();} ===== Checking compiler Executing: mpiCC -c -o /var/tmp/petsc-2v0k4k61/config.compilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -+ -std=gnu++14 /var/tmp/petsc-2v0k4k61/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk(void); void d1chk(void){return;} ===== Checking linker Executing: mpifort -c -o /var/tmp/petsc-2v0k4k61/config.compilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -g /var/tmp/petsc-2v0k4k61/config.compilers/conftest.F90 Possible ERROR while running compiler: stderr: ** main === End of Compilation 1 === 1501-510 Compilation successful for file conftest.F90. Source: program main call d1chk() end Executing: mpifort -o /var/tmp/petsc-2v0k4k61/config.compilers/conftest -g /var/tmp/petsc-2v0k4k61/config.compilers/conftest.o /var/tmp/petsc-2v0k4k61/config.compilers/cxxobj.o /var/tmp/petsc-2v0k4k61/config.compilers/confc.o -ldl compilers: Fortran can link C++ functions ============================================================================================= TESTING: setupFrameworkCompilers from config.compilers(config/BuildSystem/config/compilers.py:1487) child config.compilers 21.809636 ============================================================================================= TESTING: configureClosure from config.utilities.closure(config/BuildSystem/config/utilities/closure.py:17) Determine if Apple ^close syntax is supported in C ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.utilities.closure/conftest.o -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.utilities.closure/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/tmp/petsc-2v0k4k61/config.utilities.closure/conftest.c:6:6: error: blocks support disabled - compile with -fblocks or pick a deployment target that supports them int (^closure)(int);; ^ 1 error generated. Error while processing /var/tmp/petsc-2v0k4k61/config.utilities.closure/conftest.c. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int (^closure)(int);; return 0; } Compile failed inside link child config.utilities.closure 0.179923 ============================================================================================= TESTING: checkFortranTypeSizes from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:56) Check whether real*8 is supported and suggest flags which will allow support Executing: mpifort -c -o /var/tmp/petsc-2v0k4k61/config.compilersFortran/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -g /var/tmp/petsc-2v0k4k61/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: stderr: ** main === End of Compilation 1 === 1501-510 Compilation successful for file conftest.F90. Source: program main real*8 variable end ============================================================================================= TESTING: checkFortranPreprocessor from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:73) Determine if Fortran handles preprocessing properly Executing: mpifort -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.setCompilers -g /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.F90 Possible ERROR while running compiler: stderr: ** main === End of Compilation 1 === 1501-510 Compilation successful for file conftest.F90. Source: program main #define dummy dummy #ifndef dummy fooey #endif end compilers: Fortran uses preprocessor ============================================================================================= TESTING: checkFortranDefineCompilerOption from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:96) Check if -WF,-Dfoobar or -Dfoobar is the compiler option to define a macro Executing: mpifort -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.setCompilers -g -DTesting /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.F90 Possible ERROR while running compiler: stderr: ** main === End of Compilation 1 === 1501-510 Compilation successful for file conftest.F90. Source: program main #define dummy dummy #ifndef Testing fooey #endif end Defined make macro "FC_DEFINE_FLAG" to "-D" compilers: Fortran uses -D for defining macro ============================================================================================= TESTING: checkFortran90 from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:146) Determine whether the Fortran compiler handles F90 ===== Checking linker Executing: mpifort -c -o /var/tmp/petsc-2v0k4k61/config.compilersFortran/conftest.o -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -g /var/tmp/petsc-2v0k4k61/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: stderr: ** main === End of Compilation 1 === 1501-510 Compilation successful for file conftest.F90. Source: program main REAL(KIND=SELECTED_REAL_KIND(10)) d INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8) INTEGER (KIND=int) :: ierr ierr = 1 end Executing: mpifort -o /var/tmp/petsc-2v0k4k61/config.compilersFortran/conftest -g /var/tmp/petsc-2v0k4k61/config.compilersFortran/conftest.o -ldl Fortran compiler supports F90 ============================================================================================= TESTING: checkFortran90FreeForm from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:162) Determine whether the Fortran compiler handles F90FreeForm We also require that the compiler handles lines longer than 132 characters ===== Checking linker Executing: mpifort -c -o /var/tmp/petsc-2v0k4k61/config.compilersFortran/conftest.o -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -g /var/tmp/petsc-2v0k4k61/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: stderr: ** main === End of Compilation 1 === 1501-510 Compilation successful for file conftest.F90. Source: program main INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8); INTEGER (KIND=int) :: ierr; ierr = 1 end Executing: mpifort -o /var/tmp/petsc-2v0k4k61/config.compilersFortran/conftest -g /var/tmp/petsc-2v0k4k61/config.compilersFortran/conftest.o -ldl Defined "USING_F90FREEFORM" to "1" Fortran compiler supports F90FreeForm ============================================================================================= TESTING: checkFortran2003 from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:176) Determine whether the Fortran compiler handles F2003 ===== Checking linker Executing: mpifort -c -o /var/tmp/petsc-2v0k4k61/config.compilersFortran/conftest.o -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -g /var/tmp/petsc-2v0k4k61/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: exit code 1 stderr: "/var/tmp/petsc-2v0k4k61/config.compilersFortran/conftest.F90", line 10.10: 1514-671 (S) The CLASS keyword requires the POLYMORPHIC suboption of XLF2003. "/var/tmp/petsc-2v0k4k61/config.compilersFortran/conftest.F90", line 10.31: 1514-084 (S) Identifier this is being declared with type name base_type which has not been defined in a derived type definition. ** base_module === End of Compilation 1 === ** main === End of Compilation 2 === 1501-511 Compilation failed for file conftest.F90. Source: module Base_module type, public :: base_type integer :: A contains procedure, public :: Print => BasePrint end type base_type contains subroutine BasePrint(this) class(base_type) :: this end subroutine BasePrint end module Base_module program main use,intrinsic :: iso_c_binding Type(C_Ptr),Dimension(:),Pointer :: CArray character(kind=c_char),pointer :: nullc => null() character(kind=c_char,len=5),dimension(:),pointer::list1 allocate(list1(5)) CArray = (/(c_loc(list1(i)),i=1,5),c_loc(nullc)/) end Compile failed inside link Fortran compiler does not support F2003 ============================================================================================= TESTING: checkFortran90Array from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:211) Check for F90 array interfaces Executing: uname -s stdout: Linux ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.compilersFortran/conftest.o -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.compilersFortran/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void f90arraytest(void* a1, void* a2,void* a3, void* i) { printf("arrays [%p %p %p]\n",a1,a2,a3); fflush(stdout); return; } void f90ptrtest(void* a1, void* a2,void* a3, void* i, void* p1 ,void* p2, void* p3) { printf("arrays [%p %p %p]\n",a1,a2,a3); if ((p1 == p3) && (p1 != p2)) { printf("pointers match! [%p %p] [%p]\n",p1,p3,p2); fflush(stdout); } else { printf("pointers do not match! [%p %p] [%p]\n",p1,p3,p2); fflush(stdout); exit(111); } return; } ======== Checking running linked program ===== Checking linker Executing: mpifort -c -o /var/tmp/petsc-2v0k4k61/config.compilersFortran/conftest.o -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -g /var/tmp/petsc-2v0k4k61/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: stderr: ** main === End of Compilation 1 === 1501-510 Compilation successful for file conftest.F90. Source: program main Interface Subroutine f90ptrtest(p1,p2,p3,i) integer, pointer :: p1(:,:) integer, pointer :: p2(:,:) integer, pointer :: p3(:,:) integer i End Subroutine End Interface integer, pointer :: ptr1(:,:),ptr2(:,:) integer, target :: array(6:8,9:21) integer in in = 25 ptr1 => array ptr2 => array call f90arraytest(ptr1,ptr2,ptr1,in) call f90ptrtest(ptr1,ptr2,ptr1,in) end Executing: mpifort -o /var/tmp/petsc-2v0k4k61/config.compilersFortran/conftest -g /var/tmp/petsc-2v0k4k61/config.compilersFortran/conftest.o /var/tmp/petsc-2v0k4k61/config.compilersFortran/fooobj.o -ldl Testing executable /var/tmp/petsc-2v0k4k61/config.compilersFortran/conftest to see if it can be run Executing: /var/tmp/petsc-2v0k4k61/config.compilersFortran/conftest Running Executable with threads to time it out at 60 Executing: /var/tmp/petsc-2v0k4k61/config.compilersFortran/conftest stdout: arrays [0x7fffffff93d0 0x7fffffff93d0 0x7fffffff93d0] arrays [0x7fffffff9320 0x7fffffff9370 0x7fffffff9320] pointers do not match! [0x10001732 0x1] [(nil)] ERROR while running executable: Could not execute "['/var/tmp/petsc-2v0k4k61/config.compilersFortran/conftest']": arrays [0x7fffffff93d0 0x7fffffff93d0 0x7fffffff93d0] arrays [0x7fffffff9320 0x7fffffff9370 0x7fffffff9320] pointers do not match! [0x10001732 0x1] [(nil)] compilers: F90 uses a single argument for array pointers ============================================================================================= TESTING: checkFortran90AssumedType from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:298) Executing: mpifort -qversion stdout: IBM XL Fortran for Linux, V16.1.1 (5725-C75, 5765-J15) Version: 16.01.0001.0009 Defined "HAVE_F90_ASSUMED_TYPE_NOT_PTR" to "1" compilers: IBM F90 compiler detected so using HAVE_F90_ASSUMED_TYPE_NOT_PTR ============================================================================================= TESTING: checkFortranModuleInclude from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:303) Figures out what flag is used to specify the include path for Fortran modules ===== Checking compiler Executing: mpifort -c -o /var/tmp/petsc-2v0k4k61/config.compilersFortran/conftest.o -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -g /var/tmp/petsc-2v0k4k61/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: stderr: ** configtest === End of Compilation 1 === 1501-510 Compilation successful for file conftest.F90. Source: module configtest integer testint parameter (testint = 42) end module configtest ===== Checking linker Executing: mpifort -c -o /var/tmp/petsc-2v0k4k61/config.compilersFortran/conftest.o -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.compilersFortran/confdir -g /var/tmp/petsc-2v0k4k61/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: stderr: ** main === End of Compilation 1 === 1501-510 Compilation successful for file conftest.F90. Source: program main use configtest write(*,*) testint end Executing: mpifort -o /var/tmp/petsc-2v0k4k61/config.compilersFortran/conftest -I/var/tmp/petsc-2v0k4k61/config.compilersFortran/confdir -g /var/tmp/petsc-2v0k4k61/config.compilersFortran/conftest.o /var/tmp/petsc-2v0k4k61/config.compilersFortran/configtest.o -ldl compilers: Fortran module include flag -I found ============================================================================================= TESTING: checkFortranModuleOutput from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:369) Figures out what flag is used to specify the include path for Fortran modules ===== Checking compiler Executing: mpifort -c -o /var/tmp/petsc-2v0k4k61/config.compilersFortran/conftest.o -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -module /var/tmp/petsc-2v0k4k61/config.compilersFortran/confdir -g /var/tmp/petsc-2v0k4k61/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: stderr: /usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlf/16.1.1/bin/.orig/xlf_r: 1501-216 (W) command option -module is not recognized - passed to ld ** configtest === End of Compilation 1 === 1501-510 Compilation successful for file conftest.F90. Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -module failed ===== Checking compiler Executing: mpifort -c -o /var/tmp/petsc-2v0k4k61/config.compilersFortran/conftest.o -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -module:/var/tmp/petsc-2v0k4k61/config.compilersFortran/confdir -g /var/tmp/petsc-2v0k4k61/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: stderr: /usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlf/16.1.1/bin/.orig/xlf_r: 1501-216 (W) command option -module:/var/tmp/petsc-2v0k4k61/config.compilersFortran/confdir is not recognized - passed to ld ** configtest === End of Compilation 1 === 1501-510 Compilation successful for file conftest.F90. Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -module: failed ===== Checking compiler Executing: mpifort -c -o /var/tmp/petsc-2v0k4k61/config.compilersFortran/conftest.o -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -fmod=/var/tmp/petsc-2v0k4k61/config.compilersFortran/confdir -g /var/tmp/petsc-2v0k4k61/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: stderr: ** configtest === End of Compilation 1 === 1501-510 Compilation successful for file conftest.F90. Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -fmod= failed ===== Checking compiler Executing: mpifort -c -o /var/tmp/petsc-2v0k4k61/config.compilersFortran/conftest.o -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -J/var/tmp/petsc-2v0k4k61/config.compilersFortran/confdir -g /var/tmp/petsc-2v0k4k61/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: stderr: /usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlf/16.1.1/bin/.orig/xlf_r: 1501-216 (W) command option -J/var/tmp/petsc-2v0k4k61/config.compilersFortran/confdir is not recognized - passed to ld ** configtest === End of Compilation 1 === 1501-510 Compilation successful for file conftest.F90. Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -J failed ===== Checking compiler Executing: mpifort -c -o /var/tmp/petsc-2v0k4k61/config.compilersFortran/conftest.o -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -M/var/tmp/petsc-2v0k4k61/config.compilersFortran/confdir -g /var/tmp/petsc-2v0k4k61/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: stderr: /usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlf/16.1.1/bin/.orig/xlf_r: 1501-216 (W) command option -M/var/tmp/petsc-2v0k4k61/config.compilersFortran/confdir is not recognized - passed to ld ** configtest === End of Compilation 1 === 1501-510 Compilation successful for file conftest.F90. Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -M failed ===== Checking compiler Executing: mpifort -c -o /var/tmp/petsc-2v0k4k61/config.compilersFortran/conftest.o -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -p/var/tmp/petsc-2v0k4k61/config.compilersFortran/confdir -g /var/tmp/petsc-2v0k4k61/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: stderr: /usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlf/16.1.1/bin/.orig/xlf_r: 1501-216 (W) command option -/var/tmp/petsc-2v0k4k61/config.compilersFortran/confdir is not recognized - passed to ld ** configtest === End of Compilation 1 === 1501-510 Compilation successful for file conftest.F90. Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -p failed ===== Checking compiler Executing: mpifort -c -o /var/tmp/petsc-2v0k4k61/config.compilersFortran/conftest.o -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -qmoddir=/var/tmp/petsc-2v0k4k61/config.compilersFortran/confdir -g /var/tmp/petsc-2v0k4k61/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: stderr: ** configtest === End of Compilation 1 === 1501-510 Compilation successful for file conftest.F90. Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -qmoddir= found ============================================================================================= TESTING: checkFortranTypeStar from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:135) Determine whether the Fortran compiler handles type(*) ===== Checking compiler Executing: mpifort -c -o /var/tmp/petsc-2v0k4k61/config.compilersFortran/conftest.o -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -g /var/tmp/petsc-2v0k4k61/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: stderr: ** main === End of Compilation 1 === 1501-510 Compilation successful for file conftest.F90. Source: program main interface subroutine a(b) type(*) :: b(:) end subroutine end interface end Defined "HAVE_FORTRAN_TYPE_STAR" to "1" Fortran compiler supports type(*) ============================================================================================= TESTING: checkFortranTypeInitialize from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:125) Determines if PETSc objects in Fortran are initialized by default (doesn't work with common blocks) Defined "FORTRAN_TYPE_INITIALIZE" to " = -2" Initializing Fortran objects ============================================================================================= TESTING: configureFortranFlush from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:116) ===== Checking linker Executing: mpifort -c -o /var/tmp/petsc-2v0k4k61/config.compilersFortran/conftest.o -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -g /var/tmp/petsc-2v0k4k61/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: stderr: ** main === End of Compilation 1 === 1501-510 Compilation successful for file conftest.F90. Source: program main call flush(6) end Executing: mpifort -o /var/tmp/petsc-2v0k4k61/config.compilersFortran/conftest -g /var/tmp/petsc-2v0k4k61/config.compilersFortran/conftest.o -ldl Possible ERROR while running linker: exit code 1 stderr: /var/tmp/petsc-2v0k4k61/config.compilersFortran/conftest.o: In function `main': /var/tmp/petsc-2v0k4k61/config.compilersFortran/conftest.F90:2: undefined reference to `flush' ===== Checking linker Executing: mpifort -c -o /var/tmp/petsc-2v0k4k61/config.compilersFortran/conftest.o -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -g /var/tmp/petsc-2v0k4k61/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: stderr: ** main === End of Compilation 1 === 1501-510 Compilation successful for file conftest.F90. Source: program main call flush_(6) end Executing: mpifort -o /var/tmp/petsc-2v0k4k61/config.compilersFortran/conftest -g /var/tmp/petsc-2v0k4k61/config.compilersFortran/conftest.o -ldl Defined "HAVE_FORTRAN_FLUSH_" to "1" ============================================================================================= TESTING: checkDependencyGenerationFlag from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:414) Check if -MMD works for dependency generation, and add it if it does Trying FC compiler flag -MMD -MP Rejected FC compiler flag -MMD -MP Trying FC compiler flag -MMD Defined make macro "FC_DEPFLAGS" to "-MMD" Executing: mpifort -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -g -MMD -MP /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.F90 Possible ERROR while running compiler: stderr: /usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlf/16.1.1/bin/.orig/xlf_r: 1501-216 (W) command option -MP is not recognized - passed to ld ** main === End of Compilation 1 === 1501-510 Compilation successful for file conftest.F90. Source: program main end Rejecting compiler flag -MMD -MP due to /usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/xlf/16.1.1/bin/.orig/xlf_r: 1501-216 (W) command option -MP is not recognized - passed to ld ** main === End of Compilation 1 === 1501-510 Compilation successful for file conftest.F90. Executing: mpifort -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -g -MMD /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.F90 Possible ERROR while running compiler: stderr: ** main === End of Compilation 1 === 1501-510 Compilation successful for file conftest.F90. Source: program main end child config.compilersFortran 6.608839 ============================================================================================= TESTING: checkStdC from config.headers(config/BuildSystem/config/headers.py:105) ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.headers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c ======== Checking running linked program ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.headers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #define ISLOWER(c) ('a' <= (c) && (c) <= 'z') #define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c)) #define XOR(e, f) (((e) && !(f)) || (!(e) && (f))) int main() { int i; for(i = 0; i < 256; i++) if (XOR(islower(i), ISLOWER(i)) || toupper(i) != TOUPPER(i)) exit(2); exit(0); ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.headers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.headers/conftest.o -ldl Testing executable /var/tmp/petsc-2v0k4k61/config.headers/conftest to see if it can be run Executing: /var/tmp/petsc-2v0k4k61/config.headers/conftest Running Executable with threads to time it out at 60 Executing: /var/tmp/petsc-2v0k4k61/config.headers/conftest ============================================================================================= TESTING: checkStat from config.headers(config/BuildSystem/config/headers.py:138) Checks whether stat file-mode macros are broken, and defines STAT_MACROS_BROKEN if they are Preprocessing source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(S_ISBLK) && defined(S_IFDIR) # if S_ISBLK (S_IFDIR) You lose. # endif #endif #if defined(S_ISBLK) && defined(S_IFCHR) # if S_ISBLK (S_IFCHR) You lose. # endif #endif #if defined(S_ISLNK) && defined(S_IFREG) # if S_ISLNK (S_IFREG) You lose. # endif #endif #if defined(S_ISSOCK) && defined(S_IFREG) # if S_ISSOCK (S_IFREG) You lose. # endif #endif Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c ============================================================================================= TESTING: checkSysWait from config.headers(config/BuildSystem/config/headers.py:173) Check for POSIX.1 compatible sys/wait.h, and defines HAVE_SYS_WAIT_H if found ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.headers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifndef WEXITSTATUS #define WEXITSTATUS(stat_val) ((unsigned)(stat_val) >> 8) #endif #ifndef WIFEXITED #define WIFEXITED(stat_val) (((stat_val) & 255) == 0) #endif int main() { int s; wait (&s); s = WIFEXITED (s) ? WEXITSTATUS (s) : 1; ; return 0; } Defined "HAVE_SYS_WAIT_H" to "1" ============================================================================================= TESTING: checkTime from config.headers(config/BuildSystem/config/headers.py:195) Checks if you can safely include both and , and if so defines TIME_WITH_SYS_TIME Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_TIME_H" to "1" Checking for header: sys/time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TIME_H" to "1" ============================================================================================= TESTING: checkMath from config.headers(config/BuildSystem/config/headers.py:201) Checks for the math headers and defines Checking for header: math.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.headers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Possible ERROR while running compiler: stderr: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:8:8: warning: if statement has empty body [-Wempty-body] if (pi); ^ /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:8:8: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { double pi = M_PI; if (pi); ; return 0; } Found math #defines, like M_PI ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SETJMP_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 362 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/confdefs.h" 1 # 2 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conffix.h" 1 # 3 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 stderr: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'dos.h' file not found #include ^~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'dos.h' file not found #include ^~~~~~~ : Preprocess stderr after filtering: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'dos.h' file not found#include ^~~~~~~: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FCNTL_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FLOAT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 362 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/confdefs.h" 1 # 2 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conffix.h" 1 # 3 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 stderr: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'io.h' file not found #include ^~~~~~ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'io.h' file not found #include ^~~~~~ : Preprocess stderr after filtering: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'io.h' file not found#include ^~~~~~: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_MALLOC_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_PWD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_STRINGS_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_UNISTD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_SYSINFO_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 362 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/confdefs.h" 1 # 2 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conffix.h" 1 # 3 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 stderr: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'machine/endian.h' file not found #include ^~~~~~~~~~~~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'machine/endian.h' file not found #include ^~~~~~~~~~~~~~~~~~ : Preprocess stderr after filtering: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'machine/endian.h' file not found#include ^~~~~~~~~~~~~~~~~~: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_PARAM_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_PROCFS_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_RESOURCE_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 362 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/confdefs.h" 1 # 2 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conffix.h" 1 # 3 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 stderr: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'sys/systeminfo.h' file not found #include ^~~~~~~~~~~~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'sys/systeminfo.h' file not found #include ^~~~~~~~~~~~~~~~~~ : Preprocess stderr after filtering: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'sys/systeminfo.h' file not found#include ^~~~~~~~~~~~~~~~~~: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TIMES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_UTSNAME_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_SOCKET_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_WAIT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_NETINET_IN_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_NETDB_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: direct.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 362 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/confdefs.h" 1 # 2 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conffix.h" 1 # 3 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 stderr: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'direct.h' file not found #include ^~~~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'direct.h' file not found #include ^~~~~~~~~~ : Preprocess stderr after filtering: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'direct.h' file not found#include ^~~~~~~~~~: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_TIME_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 362 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/confdefs.h" 1 # 2 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conffix.h" 1 # 3 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 stderr: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'Ws2tcpip.h' file not found #include ^~~~~~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'Ws2tcpip.h' file not found #include ^~~~~~~~~~~~ : Preprocess stderr after filtering: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'Ws2tcpip.h' file not found#include ^~~~~~~~~~~~: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TYPES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 362 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/confdefs.h" 1 # 2 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conffix.h" 1 # 3 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 stderr: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'WindowsX.h' file not found #include ^~~~~~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'WindowsX.h' file not found #include ^~~~~~~~~~~~ : Preprocess stderr after filtering: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'WindowsX.h' file not found#include ^~~~~~~~~~~~: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FLOAT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 362 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/confdefs.h" 1 # 2 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conffix.h" 1 # 3 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 stderr: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'ieeefp.h' file not found #include ^~~~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'ieeefp.h' file not found #include ^~~~~~~~~~ : Preprocess stderr after filtering: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'ieeefp.h' file not found#include ^~~~~~~~~~: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_STDINT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_PTHREAD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: inttypes.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_INTTYPES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: immintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 362 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/confdefs.h" 1 # 2 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conffix.h" 1 # 3 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 stderr: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'immintrin.h' file not found #include ^~~~~~~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'immintrin.h' file not found #include ^~~~~~~~~~~~~ : Preprocess stderr after filtering: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'immintrin.h' file not found#include ^~~~~~~~~~~~~: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: zmmintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 362 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/confdefs.h" 1 # 2 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conffix.h" 1 # 3 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 stderr: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'zmmintrin.h' file not found #include ^~~~~~~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'zmmintrin.h' file not found #include ^~~~~~~~~~~~~ : Preprocess stderr after filtering: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'zmmintrin.h' file not found#include ^~~~~~~~~~~~~: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SETJMP_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 362 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/confdefs.h" 1 # 2 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conffix.h" 1 # 3 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 stderr: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'dos.h' file not found #include ^~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'dos.h' file not found #include ^~~~~~~ : Preprocess stderr after filtering: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'dos.h' file not found#include ^~~~~~~: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FCNTL_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FLOAT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 362 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/confdefs.h" 1 # 2 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conffix.h" 1 # 3 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 stderr: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'io.h' file not found #include ^~~~~~ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'io.h' file not found #include ^~~~~~ : Preprocess stderr after filtering: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'io.h' file not found#include ^~~~~~: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_MALLOC_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_PWD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_STRINGS_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_UNISTD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_SYSINFO_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 362 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/confdefs.h" 1 # 2 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conffix.h" 1 # 3 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 stderr: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'machine/endian.h' file not found #include ^~~~~~~~~~~~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'machine/endian.h' file not found #include ^~~~~~~~~~~~~~~~~~ : Preprocess stderr after filtering: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'machine/endian.h' file not found#include ^~~~~~~~~~~~~~~~~~: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_PARAM_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_PROCFS_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_RESOURCE_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 362 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/confdefs.h" 1 # 2 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conffix.h" 1 # 3 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 stderr: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'sys/systeminfo.h' file not found #include ^~~~~~~~~~~~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'sys/systeminfo.h' file not found #include ^~~~~~~~~~~~~~~~~~ : Preprocess stderr after filtering: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'sys/systeminfo.h' file not found#include ^~~~~~~~~~~~~~~~~~: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TIMES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_UTSNAME_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_SOCKET_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_WAIT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_NETINET_IN_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_NETDB_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: direct.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 362 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/confdefs.h" 1 # 2 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conffix.h" 1 # 3 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 stderr: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'direct.h' file not found #include ^~~~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'direct.h' file not found #include ^~~~~~~~~~ : Preprocess stderr after filtering: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'direct.h' file not found#include ^~~~~~~~~~: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_TIME_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 362 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/confdefs.h" 1 # 2 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conffix.h" 1 # 3 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 stderr: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'Ws2tcpip.h' file not found #include ^~~~~~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'Ws2tcpip.h' file not found #include ^~~~~~~~~~~~ : Preprocess stderr after filtering: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'Ws2tcpip.h' file not found#include ^~~~~~~~~~~~: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_SYS_TYPES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 362 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/confdefs.h" 1 # 2 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conffix.h" 1 # 3 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 stderr: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'WindowsX.h' file not found #include ^~~~~~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'WindowsX.h' file not found #include ^~~~~~~~~~~~ : Preprocess stderr after filtering: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'WindowsX.h' file not found#include ^~~~~~~~~~~~: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_FLOAT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 362 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/confdefs.h" 1 # 2 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conffix.h" 1 # 3 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 stderr: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'ieeefp.h' file not found #include ^~~~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'ieeefp.h' file not found #include ^~~~~~~~~~ : Preprocess stderr after filtering: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'ieeefp.h' file not found#include ^~~~~~~~~~: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_STDINT_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_PTHREAD_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: inttypes.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_INTTYPES_H" to "1" ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: immintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 362 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/confdefs.h" 1 # 2 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conffix.h" 1 # 3 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 stderr: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'immintrin.h' file not found #include ^~~~~~~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'immintrin.h' file not found #include ^~~~~~~~~~~~~ : Preprocess stderr after filtering: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'immintrin.h' file not found#include ^~~~~~~~~~~~~: ============================================================================================= TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: zmmintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 362 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/confdefs.h" 1 # 2 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conffix.h" 1 # 3 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 stderr: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'zmmintrin.h' file not found #include ^~~~~~~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'zmmintrin.h' file not found #include ^~~~~~~~~~~~~ : Preprocess stderr after filtering: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'zmmintrin.h' file not found#include ^~~~~~~~~~~~~: ============================================================================================= TESTING: checkRecursiveMacros from config.headers(config/BuildSystem/config/headers.py:216) Checks that the preprocessor allows recursive macros, and if not defines HAVE_BROKEN_RECURSIVE_MACRO ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.headers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void a(int i, int j) {} #define a(b) a(b,__LINE__) int main() { a(0); ; return 0; } child config.headers 13.668898 ============================================================================================= TESTING: configureCacheDetails from config.utilities.cacheDetails(config/BuildSystem/config/utilities/cacheDetails.py:78) Try to determine the size and associativity of the cache. ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails/conftest.o -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { ; return 0; } ======== Checking running linked program ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails/conftest.o -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_LINESIZE()); fclose(output);; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails/conftest.o -ldl Testing executable /var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails/conftest to see if it can be run Executing: /var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails/conftest Running Executable with threads to time it out at 60 Executing: /var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails/conftest Defined "LEVEL1_DCACHE_LINESIZE" to "32" child config.utilities.cacheDetails 0.631546 ============================================================================================= TESTING: check_struct_sigaction from config.types(config/BuildSystem/config/types.py:42) Checks if "struct sigaction" exists in signal.h. This check is for C89 check. Checking for type: struct sigaction ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.types/conftest.o -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/tmp/petsc-2v0k4k61/config.types/conftest.c:11:18: warning: unused variable 'a' [-Wunused-variable] struct sigaction a;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { struct sigaction a;; return 0; } struct sigaction found Defined "HAVE_STRUCT_SIGACTION" to "1" ============================================================================================= TESTING: check__int64 from config.types(config/BuildSystem/config/types.py:48) Checks if __int64 exists. This is primarily for windows. Checking for type: __int64 ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.types/conftest.o -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.types/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/tmp/petsc-2v0k4k61/config.types/conftest.c:11:1: error: unknown type name '__int64'; did you mean '__int64_t'? __int64 a;; ^~~~~~~ __int64_t /usr/include/bits/types.h:43:25: note: '__int64_t' declared here typedef signed long int __int64_t; ^ 1 error generated. Error while processing /var/tmp/petsc-2v0k4k61/config.types/conftest.c. Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { __int64 a;; return 0; } __int64 found ============================================================================================= TESTING: checkSizeTypes from config.types(config/BuildSystem/config/types.py:54) Checks for types associated with sizes, such as size_t. Checking for type: size_t ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.types/conftest.o -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/tmp/petsc-2v0k4k61/config.types/conftest.c:11:8: warning: unused variable 'a' [-Wunused-variable] size_t a;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { size_t a;; return 0; } size_t found ============================================================================================= TESTING: checkFileTypes from config.types(config/BuildSystem/config/types.py:64) Checks for types associated with files, such as mode_t, off_t, etc. Checking for type: mode_t ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.types/conftest.o -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/tmp/petsc-2v0k4k61/config.types/conftest.c:11:8: warning: unused variable 'a' [-Wunused-variable] mode_t a;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { mode_t a;; return 0; } mode_t found Checking for type: off_t ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.types/conftest.o -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/tmp/petsc-2v0k4k61/config.types/conftest.c:11:7: warning: unused variable 'a' [-Wunused-variable] off_t a;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { off_t a;; return 0; } off_t found ============================================================================================= TESTING: checkIntegerTypes from config.types(config/BuildSystem/config/types.py:59) Checks for types associated with integers, such as int32_t. Checking for type: int32_t ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.types/conftest.o -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/tmp/petsc-2v0k4k61/config.types/conftest.c:11:9: warning: unused variable 'a' [-Wunused-variable] int32_t a;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { int32_t a;; return 0; } int32_t found ============================================================================================= TESTING: checkPID from config.types(config/BuildSystem/config/types.py:70) Checks for pid_t, and defines it if necessary Checking for type: pid_t ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.types/conftest.o -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/tmp/petsc-2v0k4k61/config.types/conftest.c:11:7: warning: unused variable 'a' [-Wunused-variable] pid_t a;; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { pid_t a;; return 0; } pid_t found ============================================================================================= TESTING: checkUID from config.types(config/BuildSystem/config/types.py:74) Checks for uid_t and gid_t, and defines them if necessary Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.types /var/tmp/petsc-2v0k4k61/config.types/conftest.c ============================================================================================= TESTING: checkC99Complex from config.types(config/BuildSystem/config/types.py:81) Check for complex numbers in in C99 std Note that since PETSc source code uses _Complex we test specifically for that, not complex ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.types/conftest.o -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.types/conftest.o -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.types/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.types/conftest.o -ldl Defined "HAVE_C99_COMPLEX" to "1" ============================================================================================= TESTING: checkCxxComplex from config.types(config/BuildSystem/config/types.py:92) Check for complex numbers in namespace std ===== Checking linker Executing: mpiCC -c -o /var/tmp/petsc-2v0k4k61/config.types/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -+ -std=gnu++14 /var/tmp/petsc-2v0k4k61/config.types/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { std::complex x; ; return 0; } Executing: mpiCC -o /var/tmp/petsc-2v0k4k61/config.types/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -+ /var/tmp/petsc-2v0k4k61/config.types/conftest.o -ldl Defined "HAVE_CXX_COMPLEX" to "1" ============================================================================================= TESTING: checkConst from config.types(config/BuildSystem/config/types.py:103) Checks for working const, and if not found defines it to empty string ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.types/conftest.o -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/tmp/petsc-2v0k4k61/config.types/conftest.c:24:16: warning: if statement has empty body [-Wempty-body] if (zero.x); ^ /var/tmp/petsc-2v0k4k61/config.types/conftest.c:24:16: note: put the semicolon on a separate line to silence this warning /var/tmp/petsc-2v0k4k61/config.types/conftest.c:25:14: warning: if statement has empty body [-Wempty-body] if (x[0]); ^ /var/tmp/petsc-2v0k4k61/config.types/conftest.c:25:14: note: put the semicolon on a separate line to silence this warning /var/tmp/petsc-2v0k4k61/config.types/conftest.c:31:14: warning: if statement has empty body [-Wempty-body] if (*s); ^ /var/tmp/petsc-2v0k4k61/config.types/conftest.c:31:14: note: put the semicolon on a separate line to silence this warning /var/tmp/petsc-2v0k4k61/config.types/conftest.c:52:15: warning: if statement has empty body [-Wempty-body] if (foo); ^ /var/tmp/petsc-2v0k4k61/config.types/conftest.c:52:15: note: put the semicolon on a separate line to silence this warning /var/tmp/petsc-2v0k4k61/config.types/conftest.c:46:20: warning: variable 'b' is uninitialized when used here [-Wuninitialized] struct s *b; b->j = 5; ^ /var/tmp/petsc-2v0k4k61/config.types/conftest.c:46:18: note: initialize the variable 'b' to silence this warning struct s *b; b->j = 5; ^ = 0 /var/tmp/petsc-2v0k4k61/config.types/conftest.c:30:8: warning: variable 't' is uninitialized when used here [-Wuninitialized] *t++ = 0; ^ /var/tmp/petsc-2v0k4k61/config.types/conftest.c:27:14: note: initialize the variable 't' to silence this warning char *t; ^ = 0 6 warnings generated. Source: #include "confdefs.h" #include "conffix.h" int main() { /* Ultrix mips cc rejects this. */ typedef int charset[2]; const charset x; /* SunOS 4.1.1 cc rejects this. */ char const *const *ccp; char **p; /* NEC SVR4.0.2 mips cc rejects this. */ struct point {int x, y;}; static struct point const zero = {0,0}; /* AIX XL C 1.02.0.0 rejects this. It does not let you subtract one const X* pointer from another in an arm of an if-expression whose if-part is not a constant expression */ const char *g = "string"; ccp = &g + (g ? g-g : 0); /* HPUX 7.0 cc rejects these. */ ++ccp; p = (char**) ccp; ccp = (char const *const *) p; /* This section avoids unused variable warnings */ if (zero.x); if (x[0]); { /* SCO 3.2v4 cc rejects this. */ char *t; char const *s = 0 ? (char *) 0 : (char const *) 0; *t++ = 0; if (*s); } { /* Someone thinks the Sun supposedly-ANSI compiler will reject this. */ int x[] = {25, 17}; const int *foo = &x[0]; ++foo; } { /* Sun SC1.0 ANSI compiler rejects this -- but not the above. */ typedef const int *iptr; iptr p = 0; ++p; } { /* AIX XL C 1.02.0.0 rejects this saying "k.c", line 2.27: 1506-025 (S) Operand must be a modifiable lvalue. */ struct s { int j; const int *ap[3]; }; struct s *b; b->j = 5; } { /* ULTRIX-32 V3.1 (Rev 9) vcc rejects this */ const int foo = 10; /* Get rid of unused variable warning */ if (foo); } ; return 0; } ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: void * ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.types/conftest.o -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(void *)==8)*2-1]; Defined "SIZEOF_VOID_P" to "8" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: short ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.types/conftest.o -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(short)==2)*2-1]; Defined "SIZEOF_SHORT" to "2" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: int ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.types/conftest.o -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(int)==4)*2-1]; Defined "SIZEOF_INT" to "4" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.types/conftest.o -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(long)==8)*2-1]; Defined "SIZEOF_LONG" to "8" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long long ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.types/conftest.o -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(long long)==8)*2-1]; Defined "SIZEOF_LONG_LONG" to "8" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: enum ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.types/conftest.o -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(enum{ENUM_DUMMY})==4)*2-1]; Defined "SIZEOF_ENUM" to "4" ============================================================================================= TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:159) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: size_t ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.types/conftest.o -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(size_t)==8)*2-1]; Defined "SIZEOF_SIZE_T" to "8" ============================================================================================= TESTING: checkVisibility from config.types(config/BuildSystem/config/types.py:193) ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.types/conftest.o -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { __attribute__((visibility ("default"))) int foo(void);; return 0; } Defined "USE_VISIBILITY_C" to "1" ===== Checking compiler Executing: mpiCC -c -o /var/tmp/petsc-2v0k4k61/config.types/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -+ -std=gnu++14 /var/tmp/petsc-2v0k4k61/config.types/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { __attribute__((visibility ("default"))) int foo(void);; return 0; } Defined "USE_VISIBILITY_CXX" to "1" ============================================================================================= TESTING: checkMaxPathLen from config.types(config/BuildSystem/config/types.py:215) Determining PETSC_MAX_PATH_LEN ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.types/conftest.o -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(MAXPATHLEN) # define PETSC_MAX_PATH_LEN MAXPATHLEN #elif defined(MAX_PATH) # define PETSC_MAX_PATH_LEN MAX_PATH #elif defined(_MAX_PATH) # define PETSC_MAX_PATH_LEN _MAX_PATH #else # define PETSC_MAX_PATH_LEN 4096 #endif #define xstr(s) str(s) #define str(s) #s char petsc_max_path_len[] = xstr(PETSC_MAX_PATH_LEN); int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(MAXPATHLEN) # define PETSC_MAX_PATH_LEN MAXPATHLEN #elif defined(MAX_PATH) # define PETSC_MAX_PATH_LEN MAX_PATH #elif defined(_MAX_PATH) # define PETSC_MAX_PATH_LEN _MAX_PATH #else # define PETSC_MAX_PATH_LEN 4096 #endif #define xstr(s) str(s) #define str(s) #s char petsc_max_path_len[] = xstr(PETSC_MAX_PATH_LEN); Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.types /var/tmp/petsc-2v0k4k61/config.types/conftest.c Defined "MAX_PATH_LEN" to "4096" child config.types 5.609738 ============================================================================================= TESTING: configureMemAlign from PETSc.options.memAlign(config/PETSc/options/memAlign.py:29) Choose alignment Defined "MEMALIGN" to "16" Memory alignment is 16 child PETSc.options.memAlign 0.001762 ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.libraries/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.libraries/conftest.o -lfpe -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lfpe ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.libraries/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.libraries/conftest.o -lsocket -lnsl -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lsocket ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.libraries/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.libraries/conftest.o -lfpe -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lfpe ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.libraries/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.libraries/conftest.o -lsocket -lnsl -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lsocket ============================================================================================= TESTING: checkMath from config.libraries(config/BuildSystem/config/libraries.py:264) Check for sin() in libm, the math library Checking for functions [sin floor log10 pow] in library [''] [] ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.libraries/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include double sin(double); static void _check_sin() { double x,y; scanf("%lf",&x); y = sin(x); printf("%f",y); ; } #include double floor(double); static void _check_floor() { double x,y; scanf("%lf",&x); y = floor(x); printf("%f",y); ; } #include double log10(double); static void _check_log10() { double x,y; scanf("%lf",&x); y = log10(x); printf("%f",y); ; } #include double pow(double, double); static void _check_pow() { double x,y; scanf("%lf",&x); y = pow(x,x); printf("%f",y); ; } int main() { _check_sin(); _check_floor(); _check_log10(); _check_pow();; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.libraries/conftest.o -ldl CheckMath: using math library [] ============================================================================================= TESTING: checkMathErf from config.libraries(config/BuildSystem/config/libraries.py:283) Check for erf() in libm, the math library Checking for functions [erf] in library [] [] ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.libraries/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_erf() { double (*checkErf)(double) = erf;double x = 0,y; y = (*checkErf)(x); } int main() { _check_erf();; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.libraries/conftest.o -ldl erf() found Defined "HAVE_ERF" to "1" ============================================================================================= TESTING: checkMathTgamma from config.libraries(config/BuildSystem/config/libraries.py:292) Check for tgamma() in libm, the math library Checking for functions [tgamma] in library [] [] ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.libraries/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_tgamma() { double (*checkTgamma)(double) = tgamma;double x = 0,y; y = (*checkTgamma)(x); } int main() { _check_tgamma();; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.libraries/conftest.o -ldl tgamma() found Defined "HAVE_TGAMMA" to "1" ============================================================================================= TESTING: checkMathLgamma from config.libraries(config/BuildSystem/config/libraries.py:301) Check for lgamma() in libm, the math library Checking for functions [lgamma] in library [] [] ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.libraries/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include #include static void _check_lgamma() { double (*checkLgamma)(double) = lgamma;double x = 1,y; y = (*checkLgamma)(x);if (y != 0.) abort(); } int main() { _check_lgamma();; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.libraries/conftest.o -ldl lgamma() found Defined "HAVE_LGAMMA" to "1" ============================================================================================= TESTING: checkMathFenv from config.libraries(config/BuildSystem/config/libraries.py:314) Checks if can be used with FE_DFL_ENV Checking for functions [fesetenv] in library [] [] ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.libraries/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_fesetenv() { fesetenv(FE_DFL_ENV);; } int main() { _check_fesetenv();; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.libraries/conftest.o -ldl Defined "HAVE_FENV_H" to "1" ============================================================================================= TESTING: checkMathLog2 from config.libraries(config/BuildSystem/config/libraries.py:322) Check for log2() in libm, the math library Checking for functions [log2] in library [] [] ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.libraries/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /var/tmp/petsc-2v0k4k61/config.libraries/conftest.c:5:81: warning: unused variable 'y' [-Wunused-variable] static void _check_log2() { double (*checkLog2)(double) = log2; double x = 2.5, y = (*checkLog2)(x); } ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_log2() { double (*checkLog2)(double) = log2; double x = 2.5, y = (*checkLog2)(x); } int main() { _check_log2();; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.libraries/conftest.o -ldl log2() found Defined "HAVE_LOG2" to "1" ============================================================================================= TESTING: checkRealtime from config.libraries(config/BuildSystem/config/libraries.py:331) Check for presence of clock_gettime() in realtime library (POSIX Realtime extensions) Checking for functions [clock_gettime] in library [''] [] ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.libraries/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_clock_gettime() { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; } int main() { _check_clock_gettime();; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.libraries/conftest.o -ldl realtime functions are linked in by default ============================================================================================= TESTING: checkDynamic from config.libraries(config/BuildSystem/config/libraries.py:347) Check for the header and libraries necessary for dynamic library manipulation Checking for functions [dlopen] in library ['dl'] [] ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.libraries/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } int main() { _check_dlopen();; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.libraries/conftest.o -ldl -ldl Defined "HAVE_LIBDL" to "1" Checking for header: dlfcn.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.types /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Defined "HAVE_DLFCN_H" to "1" child config.libraries 5.418831 ============================================================================================= TESTING: configureLibraryOptions from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:37) Sets PETSC_USE_DEBUG, PETSC_USE_INFO, PETSC_USE_LOG, PETSC_USE_CTABLE, PETSC_USE_FORTRAN_KERNELS, and PETSC_USE_AVX512_KERNELS Defined "USE_LOG" to "1" Defined "USE_DEBUG" to "1" Defined "USE_INFO" to "1" Defined "USE_CTABLE" to "1" Defined "USE_BACKWARD_LOOP" to "1" **********Checking if running on BGL/IBM detected Checking for functions [bgl_perfctr_void] in library [''] [] ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.libraries/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char bgl_perfctr_void(); static void _check_bgl_perfctr_void() { bgl_perfctr_void(); } int main() { _check_bgl_perfctr_void();; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.libraries/conftest.o -ldl Possible ERROR while running linker: exit code 1 stderr: /var/tmp/petsc-2v0k4k61/config.libraries/conftest.o: In function `_check_bgl_perfctr_void': /var/tmp/petsc-2v0k4k61/config.libraries/conftest.c:5: undefined reference to `bgl_perfctr_void' Checking for functions [ADIOI_BGL_Open] in library [''] [] ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.libraries/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ADIOI_BGL_Open(); static void _check_ADIOI_BGL_Open() { ADIOI_BGL_Open(); } int main() { _check_ADIOI_BGL_Open();; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.libraries/conftest.o -ldl Possible ERROR while running linker: exit code 1 stderr: /var/tmp/petsc-2v0k4k61/config.libraries/conftest.o: In function `_check_ADIOI_BGL_Open': /var/tmp/petsc-2v0k4k61/config.libraries/conftest.c:5: undefined reference to `ADIOI_BGL_Open' *********BGL/IBM test failure Defined "USE_AVX512_KERNELS" to "1" Defined "Alignx(a,b)" to " " ============================================================================================= TESTING: configureISColorValueType from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:95) Sets PETSC_IS_COLORING_VALUE_TYPE, PETSC_MPIU_IS_COLORING_VALUE_TYPE, and PETSC_IS_COLORING_MAX as required by ISColoring Defined "MPIU_IS_COLORING_VALUE_TYPE" to "MPI_UNSIGNED_SHORT" Defined "IS_COLORING_MAX" to "USHRT_MAX" Defined "IS_COLORING_VALUE_TYPE" to "short" Defined "IS_COLORING_VALUE_TYPE_F" to "integer2" child PETSc.options.libraryOptions 0.927341 child config.atomics 0.000005 ============================================================================================= TESTING: checkSysinfo from config.functions(config/BuildSystem/config/functions.py:106) Check whether sysinfo takes three arguments, and if it does define HAVE_SYSINFO_3ARG Checking for functions [sysinfo] ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysinfo(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sysinfo) || defined (__stub___sysinfo) sysinfo_will_always_fail_with_ENOSYS(); #else sysinfo(); #endif ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -ldl Defined "HAVE_SYSINFO" to "1" ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.functions/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/tmp/petsc-2v0k4k61/config.functions/conftest.c:9:4: error: "Cannot check sysinfo without special headers" # error "Cannot check sysinfo without special headers" ^ /var/tmp/petsc-2v0k4k61/config.functions/conftest.c:13:30: warning: implicit declaration of function 'sysinfo' is invalid in C99 [-Wimplicit-function-declaration] char buf[10]; long count=10; sysinfo(1, buf, count); ^ 1 warning and 1 error generated. Error while processing /var/tmp/petsc-2v0k4k61/config.functions/conftest.c. Source: #include "confdefs.h" #include "conffix.h" #ifdef HAVE_SYS_SYSINFO_H # include #elif defined(HAVE_SYS_SYSTEMINFO_H) # include #else # error "Cannot check sysinfo without special headers" #endif int main() { char buf[10]; long count=10; sysinfo(1, buf, count); ; return 0; } Compile failed inside link ============================================================================================= TESTING: checkVPrintf from config.functions(config/BuildSystem/config/functions.py:125) Checks whether vprintf requires a char * last argument, and if it does defines HAVE_VPRINTF_CHAR ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.functions/conftest.c Possible ERROR while running compiler: stderr: /var/tmp/petsc-2v0k4k61/config.functions/conftest.c:8:16: warning: variable 'Argp' is uninitialized when used here [-Wuninitialized] vprintf( "%d", Argp ); ^~~~ /var/tmp/petsc-2v0k4k61/config.functions/conftest.c:7:13: note: initialize the variable 'Argp' to silence this warning va_list Argp; ^ = NULL 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vprintf( "%d", Argp ); ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -ldl ============================================================================================= TESTING: checkVFPrintf from config.functions(config/BuildSystem/config/functions.py:131) Checks whether vfprintf requires a char * last argument, and if it does defines HAVE_VFPRINTF_CHAR ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.functions/conftest.c Possible ERROR while running compiler: stderr: /var/tmp/petsc-2v0k4k61/config.functions/conftest.c:8:24: warning: variable 'Argp' is uninitialized when used here [-Wuninitialized] vfprintf(stdout, "%d", Argp ); ^~~~ /var/tmp/petsc-2v0k4k61/config.functions/conftest.c:7:13: note: initialize the variable 'Argp' to silence this warning va_list Argp; ^ = NULL 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vfprintf(stdout, "%d", Argp ); ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -ldl ============================================================================================= TESTING: checkVSNPrintf from config.functions(config/BuildSystem/config/functions.py:137) Checks whether vsnprintf requires a char * last argument, and if it does defines HAVE_VSNPRINTF_CHAR ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.functions/conftest.c Possible ERROR while running compiler: stderr: /var/tmp/petsc-2v0k4k61/config.functions/conftest.c:8:24: warning: variable 'Argp' is uninitialized when used here [-Wuninitialized] vsnprintf(str,5, "%d", Argp ); ^~~~ /var/tmp/petsc-2v0k4k61/config.functions/conftest.c:7:13: note: initialize the variable 'Argp' to silence this warning va_list Argp;char str[6]; ^ = NULL 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp;char str[6]; vsnprintf(str,5, "%d", Argp ); ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -ldl Defined "HAVE_VSNPRINTF" to "1" ============================================================================================= TESTING: checkNanosleep from config.functions(config/BuildSystem/config/functions.py:167) Check for functional nanosleep() - as time.h behaves differently for different compiler flags - like -std=c89 ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { struct timespec tp; tp.tv_sec = 0; tp.tv_nsec = (long)(1e9); nanosleep(&tp,0); ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -ldl Defined "HAVE_NANOSLEEP" to "1" ============================================================================================= TESTING: checkMemmove from config.functions(config/BuildSystem/config/functions.py:173) Check for functional memmove() - as MS VC requires correct includes to for this test ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { char c1[1], c2[1] = "c"; size_t n=1; memmove(c1,c2,n); ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -ldl Defined "HAVE_MEMMOVE" to "1" ============================================================================================= TESTING: checkSignalHandlerType from config.functions(config/BuildSystem/config/functions.py:143) Checks the type of C++ signals handlers, and defines SIGNAL_CAST to the correct value ===== Checking linker Executing: mpiCC -c -o /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -+ -std=gnu++14 /var/tmp/petsc-2v0k4k61/config.functions/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include static void myhandler(int sig) {} int main() { signal(SIGFPE,myhandler); ; return 0; } Executing: mpiCC -o /var/tmp/petsc-2v0k4k61/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -+ /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -ldl Defined "SIGNAL_CAST" to " " ============================================================================================= TESTING: checkFreeReturnType from config.functions(config/BuildSystem/config/functions.py:153) Checks whether free returns void or int, and defines HAVE_FREE_RETURN_INT ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.functions/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/tmp/petsc-2v0k4k61/config.functions/conftest.c:6:25: error: assigning to 'int' from incompatible type 'void' int ierr; void *p; ierr = free(p); return 0; ^ ~~~~~~~ 1 error generated. Error while processing /var/tmp/petsc-2v0k4k61/config.functions/conftest.c. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ierr; void *p; ierr = free(p); return 0; ; return 0; } Compile failed inside link ============================================================================================= TESTING: checkVariableArgumentLists from config.functions(config/BuildSystem/config/functions.py:159) Checks whether the variable argument list functionality is working ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { va_list l1, l2; va_copy(l1, l2); return 0; ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -ldl Defined "HAVE_VA_COPY" to "1" ============================================================================================= TESTING: checkClassify from config.functions(config/BuildSystem/config/functions.py:85) Recursive decompose to rapidly classify functions as found or missing To confirm that a function is missing, we require a compile/link failure with only that function in a compilation unit. In contrast, we can confirm that many functions are present by compiling them all together in a large compilation unit. We optimistically compile everything together, then trim all functions that were named in the error message and bisect the result. The trimming is only an optimization to increase the likelihood of a big-batch compile succeeding; we do not rely on the compiler naming missing functions. Checking for functions [_lseek access realpath gethostname readlink fpsetsticky time _set_output_format dlclose sleep memalign _snprintf PXFGETARG stricmp lseek strcasecmp dlsym socket popen snprintf gethostbyname fpresetsticky dlerror bzero usleep _pipe sbreak getpagesize getcwd clock getrusage _access drand48 _sleep _mkdir _getcwd getwd uname rand getdomainname dlopen fork] ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.functions/conftest.c Possible ERROR while running compiler: stderr: /var/tmp/petsc-2v0k4k61/config.functions/conftest.c:28:6: warning: incompatible redeclaration of library function 'strcasecmp' [-Wincompatible-library-redeclaration] char strcasecmp(); ^ /var/tmp/petsc-2v0k4k61/config.functions/conftest.c:28:6: note: 'strcasecmp' is a builtin with type 'int (const char *, const char *)' /var/tmp/petsc-2v0k4k61/config.functions/conftest.c:32:6: warning: incompatible redeclaration of library function 'snprintf' [-Wincompatible-library-redeclaration] char snprintf(); ^ /var/tmp/petsc-2v0k4k61/config.functions/conftest.c:32:6: note: 'snprintf' is a builtin with type 'int (char *, unsigned long, const char *, ...)' /var/tmp/petsc-2v0k4k61/config.functions/conftest.c:36:6: warning: incompatible redeclaration of library function 'bzero' [-Wincompatible-library-redeclaration] char bzero(); ^ /var/tmp/petsc-2v0k4k61/config.functions/conftest.c:36:6: note: 'bzero' is a builtin with type 'void (void *, unsigned long)' 3 warnings generated. Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _lseek(); char access(); char realpath(); char gethostname(); char readlink(); char fpsetsticky(); char time(); char _set_output_format(); char dlclose(); char sleep(); char memalign(); char _snprintf(); char PXFGETARG(); char stricmp(); char lseek(); char strcasecmp(); char dlsym(); char socket(); char popen(); char snprintf(); char gethostbyname(); char fpresetsticky(); char dlerror(); char bzero(); char usleep(); char _pipe(); char sbreak(); char getpagesize(); char getcwd(); char clock(); char getrusage(); char _access(); char drand48(); char _sleep(); char _mkdir(); char _getcwd(); char getwd(); char uname(); char rand(); char getdomainname(); char dlopen(); char fork(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_fpsetsticky) || defined (__stub___fpsetsticky) fpsetsticky_will_always_fail_with_ENOSYS(); #else fpsetsticky(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_fpresetsticky) || defined (__stub___fpresetsticky) fpresetsticky_will_always_fail_with_ENOSYS(); #else fpresetsticky(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub__pipe) || defined (__stub____pipe) _pipe_will_always_fail_with_ENOSYS(); #else _pipe(); #endif #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif #if defined (__stub__mkdir) || defined (__stub____mkdir) _mkdir_will_always_fail_with_ENOSYS(); #else _mkdir(); #endif #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -ldl Possible ERROR while running linker: exit code 1 stderr: /var/tmp/petsc-2v0k4k61/config.functions/conftest.o: In function `main': /var/tmp/petsc-2v0k4k61/config.functions/conftest.c:281: warning: the `getwd' function is dangerous and should not be used. /var/tmp/petsc-2v0k4k61/config.functions/conftest.c:65: undefined reference to `_lseek' /var/tmp/petsc-2v0k4k61/config.functions/conftest.c:95: undefined reference to `fpsetsticky' /var/tmp/petsc-2v0k4k61/config.functions/conftest.c:107: undefined reference to `_set_output_format' /var/tmp/petsc-2v0k4k61/config.functions/conftest.c:131: undefined reference to `_snprintf' /var/tmp/petsc-2v0k4k61/config.functions/conftest.c:137: undefined reference to `PXFGETARG' /var/tmp/petsc-2v0k4k61/config.functions/conftest.c:143: undefined reference to `stricmp' /var/tmp/petsc-2v0k4k61/config.functions/conftest.c:191: undefined reference to `fpresetsticky' /var/tmp/petsc-2v0k4k61/config.functions/conftest.c:215: undefined reference to `_pipe' /var/tmp/petsc-2v0k4k61/config.functions/conftest.c:221: undefined reference to `sbreak' /var/tmp/petsc-2v0k4k61/config.functions/conftest.c:251: undefined reference to `_access' /var/tmp/petsc-2v0k4k61/config.functions/conftest.c:263: undefined reference to `_sleep' /var/tmp/petsc-2v0k4k61/config.functions/conftest.c:269: undefined reference to `_mkdir' /var/tmp/petsc-2v0k4k61/config.functions/conftest.c:275: undefined reference to `_getcwd' Checking for functions [realpath gethostname readlink time dlclose memalign strcasecmp dlsym socket popen gethostbyname] ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.functions/conftest.c Possible ERROR while running compiler: stderr: /var/tmp/petsc-2v0k4k61/config.functions/conftest.c:19:6: warning: incompatible redeclaration of library function 'strcasecmp' [-Wincompatible-library-redeclaration] char strcasecmp(); ^ /var/tmp/petsc-2v0k4k61/config.functions/conftest.c:19:6: note: 'strcasecmp' is a builtin with type 'int (const char *, const char *)' 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char realpath(); char gethostname(); char readlink(); char time(); char dlclose(); char memalign(); char strcasecmp(); char dlsym(); char socket(); char popen(); char gethostbyname(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -ldl Defined "HAVE_REALPATH" to "1" Defined "HAVE_GETHOSTNAME" to "1" Defined "HAVE_READLINK" to "1" Defined "HAVE_TIME" to "1" Defined "HAVE_DLCLOSE" to "1" Defined "HAVE_MEMALIGN" to "1" Defined "HAVE_STRCASECMP" to "1" Defined "HAVE_DLSYM" to "1" Defined "HAVE_SOCKET" to "1" Defined "HAVE_POPEN" to "1" Defined "HAVE_GETHOSTBYNAME" to "1" Checking for functions [dlerror bzero usleep getpagesize clock getrusage drand48 uname rand getdomainname dlopen fork] ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.functions/conftest.c Possible ERROR while running compiler: stderr: /var/tmp/petsc-2v0k4k61/config.functions/conftest.c:14:6: warning: incompatible redeclaration of library function 'bzero' [-Wincompatible-library-redeclaration] char bzero(); ^ /var/tmp/petsc-2v0k4k61/config.functions/conftest.c:14:6: note: 'bzero' is a builtin with type 'void (void *, unsigned long)' 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char dlerror(); char bzero(); char usleep(); char getpagesize(); char clock(); char getrusage(); char drand48(); char uname(); char rand(); char getdomainname(); char dlopen(); char fork(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -ldl Defined "HAVE_DLERROR" to "1" Defined "HAVE_BZERO" to "1" Defined "HAVE_USLEEP" to "1" Defined "HAVE_GETPAGESIZE" to "1" Defined "HAVE_CLOCK" to "1" Defined "HAVE_GETRUSAGE" to "1" Defined "HAVE_DRAND48" to "1" Defined "HAVE_UNAME" to "1" Defined "HAVE_RAND" to "1" Defined "HAVE_GETDOMAINNAME" to "1" Defined "HAVE_DLOPEN" to "1" Defined "HAVE_FORK" to "1" Checking for functions [_lseek] ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -ldl Possible ERROR while running linker: exit code 1 stderr: /var/tmp/petsc-2v0k4k61/config.functions/conftest.o: In function `main': /var/tmp/petsc-2v0k4k61/config.functions/conftest.c:24: undefined reference to `_lseek' Checking for functions [access] ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -ldl Defined "HAVE_ACCESS" to "1" Checking for functions [fpsetsticky] ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fpsetsticky(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fpsetsticky) || defined (__stub___fpsetsticky) fpsetsticky_will_always_fail_with_ENOSYS(); #else fpsetsticky(); #endif ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -ldl Possible ERROR while running linker: exit code 1 stderr: /var/tmp/petsc-2v0k4k61/config.functions/conftest.o: In function `main': /var/tmp/petsc-2v0k4k61/config.functions/conftest.c:24: undefined reference to `fpsetsticky' Checking for functions [_set_output_format] ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _set_output_format(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -ldl Possible ERROR while running linker: exit code 1 stderr: /var/tmp/petsc-2v0k4k61/config.functions/conftest.o: In function `main': /var/tmp/petsc-2v0k4k61/config.functions/conftest.c:24: undefined reference to `_set_output_format' Checking for functions [sleep] ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -ldl Defined "HAVE_SLEEP" to "1" Checking for functions [_snprintf] ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -ldl Possible ERROR while running linker: exit code 1 stderr: /var/tmp/petsc-2v0k4k61/config.functions/conftest.o: In function `main': /var/tmp/petsc-2v0k4k61/config.functions/conftest.c:24: undefined reference to `_snprintf' Checking for functions [PXFGETARG] ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -ldl Possible ERROR while running linker: exit code 1 stderr: /var/tmp/petsc-2v0k4k61/config.functions/conftest.o: In function `main': /var/tmp/petsc-2v0k4k61/config.functions/conftest.c:24: undefined reference to `PXFGETARG' Checking for functions [stricmp] ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -ldl Possible ERROR while running linker: exit code 1 stderr: /var/tmp/petsc-2v0k4k61/config.functions/conftest.o: In function `main': /var/tmp/petsc-2v0k4k61/config.functions/conftest.c:24: undefined reference to `stricmp' Checking for functions [lseek] ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -ldl Defined "HAVE_LSEEK" to "1" Checking for functions [snprintf] ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.functions/conftest.c Possible ERROR while running compiler: stderr: /var/tmp/petsc-2v0k4k61/config.functions/conftest.c:13:6: warning: incompatible redeclaration of library function 'snprintf' [-Wincompatible-library-redeclaration] char snprintf(); ^ /var/tmp/petsc-2v0k4k61/config.functions/conftest.c:13:6: note: 'snprintf' is a builtin with type 'int (char *, unsigned long, const char *, ...)' 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -ldl Defined "HAVE_SNPRINTF" to "1" Checking for functions [fpresetsticky] ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fpresetsticky(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fpresetsticky) || defined (__stub___fpresetsticky) fpresetsticky_will_always_fail_with_ENOSYS(); #else fpresetsticky(); #endif ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -ldl Possible ERROR while running linker: exit code 1 stderr: /var/tmp/petsc-2v0k4k61/config.functions/conftest.o: In function `main': /var/tmp/petsc-2v0k4k61/config.functions/conftest.c:24: undefined reference to `fpresetsticky' Checking for functions [_pipe] ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _pipe(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__pipe) || defined (__stub____pipe) _pipe_will_always_fail_with_ENOSYS(); #else _pipe(); #endif ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -ldl Possible ERROR while running linker: exit code 1 stderr: /var/tmp/petsc-2v0k4k61/config.functions/conftest.o: In function `main': /var/tmp/petsc-2v0k4k61/config.functions/conftest.c:24: undefined reference to `_pipe' Checking for functions [sbreak] ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -ldl Possible ERROR while running linker: exit code 1 stderr: /var/tmp/petsc-2v0k4k61/config.functions/conftest.o: In function `main': /var/tmp/petsc-2v0k4k61/config.functions/conftest.c:24: undefined reference to `sbreak' Checking for functions [getcwd] ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -ldl Defined "HAVE_GETCWD" to "1" Checking for functions [_access] ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -ldl Possible ERROR while running linker: exit code 1 stderr: /var/tmp/petsc-2v0k4k61/config.functions/conftest.o: In function `main': /var/tmp/petsc-2v0k4k61/config.functions/conftest.c:24: undefined reference to `_access' Checking for functions [_sleep] ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -ldl Possible ERROR while running linker: exit code 1 stderr: /var/tmp/petsc-2v0k4k61/config.functions/conftest.o: In function `main': /var/tmp/petsc-2v0k4k61/config.functions/conftest.c:24: undefined reference to `_sleep' Checking for functions [_mkdir] ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _mkdir(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__mkdir) || defined (__stub____mkdir) _mkdir_will_always_fail_with_ENOSYS(); #else _mkdir(); #endif ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -ldl Possible ERROR while running linker: exit code 1 stderr: /var/tmp/petsc-2v0k4k61/config.functions/conftest.o: In function `main': /var/tmp/petsc-2v0k4k61/config.functions/conftest.c:24: undefined reference to `_mkdir' Checking for functions [_getcwd] ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -ldl Possible ERROR while running linker: exit code 1 stderr: /var/tmp/petsc-2v0k4k61/config.functions/conftest.o: In function `main': /var/tmp/petsc-2v0k4k61/config.functions/conftest.c:24: undefined reference to `_getcwd' Checking for functions [getwd] ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -ldl Possible ERROR while running linker: stderr: /var/tmp/petsc-2v0k4k61/config.functions/conftest.o: In function `main': /var/tmp/petsc-2v0k4k61/config.functions/conftest.c:24: warning: the `getwd' function is dangerous and should not be used. Defined "HAVE_GETWD" to "1" ============================================================================================= TESTING: checkMmap from config.functions(config/BuildSystem/config/functions.py:179) Check for functional mmap() to allocate shared memory and define HAVE_MMAP ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { int fd; fd=open("/tmp/file",O_RDWR); mmap((void*)0,100,PROT_READ|PROT_WRITE,MAP_SHARED,fd,0); ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.functions/conftest.o -ldl Defined "HAVE_MMAP" to "1" child config.functions 13.375340 ============================================================================================= TESTING: configureMemorySize from config.utilities.getResidentSetSize(config/BuildSystem/config/utilities/getResidentSetSize.py:31) Try to determine how to measure the memory usage Defined "USE_PROC_FOR_SIZE" to "1" Using /proc for PetscMemoryGetCurrentUsage() child config.utilities.getResidentSetSize 0.002105 ============================================================================================= TESTING: configureFortranCommandLine from config.utilities.fortranCommandLine(config/BuildSystem/config/utilities/fortranCommandLine.py:27) Check for the mechanism to retrieve command line arguments in Fortran Checking for functions [] in library [''] [] ===== Checking linker Executing: mpifort -c -o /var/tmp/petsc-2v0k4k61/config.libraries/conftest.o -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.libraries -g /var/tmp/petsc-2v0k4k61/config.libraries/conftest.F90 Possible ERROR while running compiler: stderr: ** main === End of Compilation 1 === 1501-510 Compilation successful for file conftest.F90. Source: program main integer i character*(80) arg i = command_argument_count() call get_command_argument(i,arg) end Executing: mpifort -o /var/tmp/petsc-2v0k4k61/config.libraries/conftest -g /var/tmp/petsc-2v0k4k61/config.libraries/conftest.o -ldl Defined "HAVE_FORTRAN_GET_COMMAND_ARGUMENT" to "1" child config.utilities.fortranCommandLine 0.441588 ============================================================================================= TESTING: configureFeatureTestMacros from config.utilities.featureTestMacros(config/BuildSystem/config/utilities/featureTestMacros.py:13) Checks if certain feature test macros are support ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros/conftest.c:4:10: fatal error: 'sysctl.h' file not found #include ^~~~~~~~~~ 1 error generated. Error while processing /var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros/conftest.c. Source: #include "confdefs.h" #include "conffix.h" #define _POSIX_C_SOURCE 200112L #include int main() { ; return 0; } ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #include int main() { ; return 0; } Defined "_BSD_SOURCE" to "1" ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _DEFAULT_SOURCE #include int main() { ; return 0; } Defined "_DEFAULT_SOURCE" to "1" ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include int main() { cpu_set_t mset; CPU_ZERO(&mset);; return 0; } Defined "_GNU_SOURCE" to "1" child config.utilities.featureTestMacros 0.812645 ============================================================================================= TESTING: configureMissingUtypeTypedefs from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:55) Checks if u_short is undefined ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c:6:9: warning: unused variable 'foo' [-Wunused-variable] u_short foo; ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { u_short foo; ; return 0; } ============================================================================================= TESTING: configureMissingFunctions from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:61) Checks for SOCKETS ============================================================================================= TESTING: configureMissingSignals from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:79) Check for missing signals, and define MISSING_ if necessary ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGABRT; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGALRM; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGBUS; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCHLD; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCONT; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGFPE; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGHUP; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGILL; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGINT; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGKILL; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGPIPE; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGQUIT; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSEGV; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSTOP; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSYS; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTERM; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTRAP; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTSTP; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGURG; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR1; if (i); ; return 0; } ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c:8:7: warning: if statement has empty body [-Wempty-body] if (i); ^ /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c:8:7: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR2; if (i); ; return 0; } ============================================================================================= TESTING: configureMissingGetdomainnamePrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:96) ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } ===== Checking linker Executing: mpiCC -c -o /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -+ -std=gnu++14 /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Executing: mpiCC -o /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -+ /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.o -ldl ============================================================================================= TESTING: configureMissingSrandPrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:121) ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #include int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } ===== Checking linker Executing: mpiCC -c -o /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -+ -std=gnu++14 /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #include int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Executing: mpiCC -o /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -+ /var/tmp/petsc-2v0k4k61/config.utilities.missing/conftest.o -ldl child config.utilities.missing 5.923597 ============================================================================================= TESTING: configureFPTrap from config.utilities.FPTrap(config/BuildSystem/config/utilities/FPTrap.py:27) Checking the handling of floating point traps Checking for header: sigfpe.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.types /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 362 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/confdefs.h" 1 # 2 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conffix.h" 1 # 3 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 stderr: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'sigfpe.h' file not found #include ^~~~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'sigfpe.h' file not found #include ^~~~~~~~~~ : Preprocess stderr after filtering: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'sigfpe.h' file not found#include ^~~~~~~~~~: Checking for header: fpxcp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.types /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 362 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/confdefs.h" 1 # 2 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conffix.h" 1 # 3 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 stderr: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'fpxcp.h' file not found #include ^~~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'fpxcp.h' file not found #include ^~~~~~~~~ : Preprocess stderr after filtering: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'fpxcp.h' file not found#include ^~~~~~~~~: Checking for header: floatingpoint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.types /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" # 1 "" 1 # 1 "" 3 # 362 "" 3 # 1 "" 1 # 1 "" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/confdefs.h" 1 # 2 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 # 1 "/var/tmp/petsc-2v0k4k61/config.headers/conffix.h" 1 # 3 "/var/tmp/petsc-2v0k4k61/config.headers/conftest.c" 2 stderr: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'floatingpoint.h' file not found #include ^~~~~~~~~~~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'floatingpoint.h' file not found #include ^~~~~~~~~~~~~~~~~ : Preprocess stderr after filtering: /var/tmp/petsc-2v0k4k61/config.headers/conftest.c:3:10: fatal error: 'floatingpoint.h' file not found#include ^~~~~~~~~~~~~~~~~: child config.utilities.FPTrap 0.479983 ============================================================================================= TESTING: configureScalarType from PETSc.options.scalarTypes(config/PETSc/options/scalarTypes.py:40) Choose between real and complex numbers Scalar type is real ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/PETSc.options.scalarTypes/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -I/var/tmp/petsc-2v0k4k61/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /var/tmp/petsc-2v0k4k61/PETSc.options.scalarTypes/conftest.c:6:21: warning: unused variable 'a' [-Wunused-variable] double b = 2.0; int a = isnormal(b); ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnormal(b); ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/PETSc.options.scalarTypes/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/PETSc.options.scalarTypes/conftest.o -ldl Defined "HAVE_ISNORMAL" to "1" ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/PETSc.options.scalarTypes/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -I/var/tmp/petsc-2v0k4k61/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /var/tmp/petsc-2v0k4k61/PETSc.options.scalarTypes/conftest.c:6:21: warning: unused variable 'a' [-Wunused-variable] double b = 2.0; int a = isnan(b); ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnan(b); ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/PETSc.options.scalarTypes/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/PETSc.options.scalarTypes/conftest.o -ldl Defined "HAVE_ISNAN" to "1" ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/PETSc.options.scalarTypes/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -I/var/tmp/petsc-2v0k4k61/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /var/tmp/petsc-2v0k4k61/PETSc.options.scalarTypes/conftest.c:6:21: warning: unused variable 'a' [-Wunused-variable] double b = 2.0; int a = isinf(b); ^ 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isinf(b); ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/PETSc.options.scalarTypes/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/PETSc.options.scalarTypes/conftest.o -ldl Defined "HAVE_ISINF" to "1" ============================================================================================= TESTING: configurePrecision from PETSc.options.scalarTypes(config/PETSc/options/scalarTypes.py:81) Set the default real number precision for PETSc objects Checking C compiler works with __float128 Checking for functions [logq] in library ['quadmath'] [] ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.libraries/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/tmp/petsc-2v0k4k61/config.libraries/conftest.c:4:10: fatal error: 'quadmath.h' file not found #include ^~~~~~~~~~~~ 1 error generated. Error while processing /var/tmp/petsc-2v0k4k61/config.libraries/conftest.c. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_logq() { __float128 f; logq(f);; } int main() { _check_logq();; return 0; } Compile failed inside link Defined "USE_REAL_DOUBLE" to "1" Defined make macro "PETSC_SCALAR_SIZE" to "64" Precision is double child PETSc.options.scalarTypes 1.554477 ============================================================================================= TESTING: configureMkdir from config.programs(config/BuildSystem/config/programs.py:22) Make sure we can have mkdir automatically make intermediate directories Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/bin/mkdir...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/bin/mkdir...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/bin/mkdir...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/bin/mkdir...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/bin/mkdir...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/bin/mkdir...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/bin/mkdir...not found Checking for program /g/g15/faibuss/spack/bin/mkdir...not found Checking for program /usr/tce/packages/valgrind/valgrind-3.16.1/bin/mkdir...not found Checking for program /usr/tce/packages/cmake/cmake-3.14.5/bin/mkdir...not found Checking for program /usr/tce/packages/python/python-3.8.2/bin/mkdir...not found Checking for program /usr/tce/packages/cuda/cuda-11.1.1/bin/mkdir...not found Checking for program /usr/tce/packages/spectrum-mpi/spectrum-mpi-rolling-release-xl-2020.11.12-cuda-11.1.1/bin/mkdir...not found Checking for program /usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/bin/mkdir...not found Checking for program /usr/tcetmp/bin/mkdir...not found Checking for program /usr/lib64/qt-3.3/bin/mkdir...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/mkdir...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/mkdir...not found Checking for program /usr/condabin/mkdir...not found Checking for program /usr/local/bin/mkdir...not found Checking for program /usr/bin/mkdir...found Executing: /usr/bin/mkdir -p .conftest/tmp Adding -p flag to /usr/bin/mkdir -p to automatically create directories Defined make macro "MKDIR" to "/usr/bin/mkdir -p" ============================================================================================= TESTING: configureAutoreconf from config.programs(config/BuildSystem/config/programs.py:44) Check for autoreconf Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/bin/autoreconf...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/bin/autoreconf...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/bin/autoreconf...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/bin/autoreconf...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/bin/autoreconf...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/bin/autoreconf...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/bin/autoreconf...not found Checking for program /g/g15/faibuss/spack/bin/autoreconf...not found Checking for program /usr/tce/packages/valgrind/valgrind-3.16.1/bin/autoreconf...not found Checking for program /usr/tce/packages/cmake/cmake-3.14.5/bin/autoreconf...not found Checking for program /usr/tce/packages/python/python-3.8.2/bin/autoreconf...not found Checking for program /usr/tce/packages/cuda/cuda-11.1.1/bin/autoreconf...not found Checking for program /usr/tce/packages/spectrum-mpi/spectrum-mpi-rolling-release-xl-2020.11.12-cuda-11.1.1/bin/autoreconf...not found Checking for program /usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/bin/autoreconf...not found Checking for program /usr/tcetmp/bin/autoreconf...not found Checking for program /usr/lib64/qt-3.3/bin/autoreconf...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/autoreconf...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/autoreconf...not found Checking for program /usr/condabin/autoreconf...not found Checking for program /usr/local/bin/autoreconf...not found Checking for program /usr/bin/autoreconf...found Executing: ['/usr/bin/autoreconf'] autoreconf test successful! Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/bin/libtoolize...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/bin/libtoolize...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/bin/libtoolize...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/bin/libtoolize...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/bin/libtoolize...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/bin/libtoolize...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/bin/libtoolize...not found Checking for program /g/g15/faibuss/spack/bin/libtoolize...not found Checking for program /usr/tce/packages/valgrind/valgrind-3.16.1/bin/libtoolize...not found Checking for program /usr/tce/packages/cmake/cmake-3.14.5/bin/libtoolize...not found Checking for program /usr/tce/packages/python/python-3.8.2/bin/libtoolize...not found Checking for program /usr/tce/packages/cuda/cuda-11.1.1/bin/libtoolize...not found Checking for program /usr/tce/packages/spectrum-mpi/spectrum-mpi-rolling-release-xl-2020.11.12-cuda-11.1.1/bin/libtoolize...not found Checking for program /usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/bin/libtoolize...not found Checking for program /usr/tcetmp/bin/libtoolize...not found Checking for program /usr/lib64/qt-3.3/bin/libtoolize...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/libtoolize...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/libtoolize...not found Checking for program /usr/condabin/libtoolize...not found Checking for program /usr/local/bin/libtoolize...not found Checking for program /usr/bin/libtoolize...found ============================================================================================= TESTING: configurePrograms from config.programs(config/BuildSystem/config/programs.py:71) Check for the programs needed to build and run PETSc Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/bin/sh...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/bin/sh...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/bin/sh...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/bin/sh...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/bin/sh...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/bin/sh...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/bin/sh...not found Checking for program /g/g15/faibuss/spack/bin/sh...not found Checking for program /usr/tce/packages/valgrind/valgrind-3.16.1/bin/sh...not found Checking for program /usr/tce/packages/cmake/cmake-3.14.5/bin/sh...not found Checking for program /usr/tce/packages/python/python-3.8.2/bin/sh...not found Checking for program /usr/tce/packages/cuda/cuda-11.1.1/bin/sh...not found Checking for program /usr/tce/packages/spectrum-mpi/spectrum-mpi-rolling-release-xl-2020.11.12-cuda-11.1.1/bin/sh...not found Checking for program /usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/bin/sh...not found Checking for program /usr/tcetmp/bin/sh...not found Checking for program /usr/lib64/qt-3.3/bin/sh...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/sh...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/sh...not found Checking for program /usr/condabin/sh...not found Checking for program /usr/local/bin/sh...not found Checking for program /usr/bin/sh...found Defined make macro "SHELL" to "/usr/bin/sh" Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/bin/sed...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/bin/sed...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/bin/sed...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/bin/sed...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/bin/sed...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/bin/sed...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/bin/sed...not found Checking for program /g/g15/faibuss/spack/bin/sed...not found Checking for program /usr/tce/packages/valgrind/valgrind-3.16.1/bin/sed...not found Checking for program /usr/tce/packages/cmake/cmake-3.14.5/bin/sed...not found Checking for program /usr/tce/packages/python/python-3.8.2/bin/sed...not found Checking for program /usr/tce/packages/cuda/cuda-11.1.1/bin/sed...not found Checking for program /usr/tce/packages/spectrum-mpi/spectrum-mpi-rolling-release-xl-2020.11.12-cuda-11.1.1/bin/sed...not found Checking for program /usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/bin/sed...not found Checking for program /usr/tcetmp/bin/sed...not found Checking for program /usr/lib64/qt-3.3/bin/sed...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/sed...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/sed...not found Checking for program /usr/condabin/sed...not found Checking for program /usr/local/bin/sed...not found Checking for program /usr/bin/sed...found Defined make macro "SED" to "/usr/bin/sed" Executing: /usr/bin/sed -i s/sed/sd/g "/var/tmp/petsc-2v0k4k61/config.programs/sed1" Adding SEDINPLACE cmd: /usr/bin/sed -i Defined make macro "SEDINPLACE" to "/usr/bin/sed -i" Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/bin/mv...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/bin/mv...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/bin/mv...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/bin/mv...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/bin/mv...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/bin/mv...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/bin/mv...not found Checking for program /g/g15/faibuss/spack/bin/mv...not found Checking for program /usr/tce/packages/valgrind/valgrind-3.16.1/bin/mv...not found Checking for program /usr/tce/packages/cmake/cmake-3.14.5/bin/mv...not found Checking for program /usr/tce/packages/python/python-3.8.2/bin/mv...not found Checking for program /usr/tce/packages/cuda/cuda-11.1.1/bin/mv...not found Checking for program /usr/tce/packages/spectrum-mpi/spectrum-mpi-rolling-release-xl-2020.11.12-cuda-11.1.1/bin/mv...not found Checking for program /usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/bin/mv...not found Checking for program /usr/tcetmp/bin/mv...not found Checking for program /usr/lib64/qt-3.3/bin/mv...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/mv...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/mv...not found Checking for program /usr/condabin/mv...not found Checking for program /usr/local/bin/mv...not found Checking for program /usr/bin/mv...found Defined make macro "MV" to "/usr/bin/mv" Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/bin/cp...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/bin/cp...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/bin/cp...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/bin/cp...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/bin/cp...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/bin/cp...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/bin/cp...not found Checking for program /g/g15/faibuss/spack/bin/cp...not found Checking for program /usr/tce/packages/valgrind/valgrind-3.16.1/bin/cp...not found Checking for program /usr/tce/packages/cmake/cmake-3.14.5/bin/cp...not found Checking for program /usr/tce/packages/python/python-3.8.2/bin/cp...not found Checking for program /usr/tce/packages/cuda/cuda-11.1.1/bin/cp...not found Checking for program /usr/tce/packages/spectrum-mpi/spectrum-mpi-rolling-release-xl-2020.11.12-cuda-11.1.1/bin/cp...not found Checking for program /usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/bin/cp...not found Checking for program /usr/tcetmp/bin/cp...not found Checking for program /usr/lib64/qt-3.3/bin/cp...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/cp...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/cp...not found Checking for program /usr/condabin/cp...not found Checking for program /usr/local/bin/cp...not found Checking for program /usr/bin/cp...found Defined make macro "CP" to "/usr/bin/cp" Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/bin/grep...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/bin/grep...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/bin/grep...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/bin/grep...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/bin/grep...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/bin/grep...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/bin/grep...not found Checking for program /g/g15/faibuss/spack/bin/grep...not found Checking for program /usr/tce/packages/valgrind/valgrind-3.16.1/bin/grep...not found Checking for program /usr/tce/packages/cmake/cmake-3.14.5/bin/grep...not found Checking for program /usr/tce/packages/python/python-3.8.2/bin/grep...not found Checking for program /usr/tce/packages/cuda/cuda-11.1.1/bin/grep...not found Checking for program /usr/tce/packages/spectrum-mpi/spectrum-mpi-rolling-release-xl-2020.11.12-cuda-11.1.1/bin/grep...not found Checking for program /usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/bin/grep...not found Checking for program /usr/tcetmp/bin/grep...not found Checking for program /usr/lib64/qt-3.3/bin/grep...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/grep...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/grep...not found Checking for program /usr/condabin/grep...not found Checking for program /usr/local/bin/grep...not found Checking for program /usr/bin/grep...found Defined make macro "GREP" to "/usr/bin/grep" Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/bin/rm...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/bin/rm...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/bin/rm...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/bin/rm...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/bin/rm...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/bin/rm...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/bin/rm...not found Checking for program /g/g15/faibuss/spack/bin/rm...not found Checking for program /usr/tce/packages/valgrind/valgrind-3.16.1/bin/rm...not found Checking for program /usr/tce/packages/cmake/cmake-3.14.5/bin/rm...not found Checking for program /usr/tce/packages/python/python-3.8.2/bin/rm...not found Checking for program /usr/tce/packages/cuda/cuda-11.1.1/bin/rm...not found Checking for program /usr/tce/packages/spectrum-mpi/spectrum-mpi-rolling-release-xl-2020.11.12-cuda-11.1.1/bin/rm...not found Checking for program /usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/bin/rm...not found Checking for program /usr/tcetmp/bin/rm...not found Checking for program /usr/lib64/qt-3.3/bin/rm...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/rm...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/rm...not found Checking for program /usr/condabin/rm...not found Checking for program /usr/local/bin/rm...not found Checking for program /usr/bin/rm...found Defined make macro "RM" to "/usr/bin/rm -f" Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/bin/diff...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/bin/diff...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/bin/diff...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/bin/diff...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/bin/diff...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/bin/diff...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/bin/diff...not found Checking for program /g/g15/faibuss/spack/bin/diff...not found Checking for program /usr/tce/packages/valgrind/valgrind-3.16.1/bin/diff...not found Checking for program /usr/tce/packages/cmake/cmake-3.14.5/bin/diff...not found Checking for program /usr/tce/packages/python/python-3.8.2/bin/diff...not found Checking for program /usr/tce/packages/cuda/cuda-11.1.1/bin/diff...not found Checking for program /usr/tce/packages/spectrum-mpi/spectrum-mpi-rolling-release-xl-2020.11.12-cuda-11.1.1/bin/diff...not found Checking for program /usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/bin/diff...not found Checking for program /usr/tcetmp/bin/diff...not found Checking for program /usr/lib64/qt-3.3/bin/diff...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/diff...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/diff...not found Checking for program /usr/condabin/diff...not found Checking for program /usr/local/bin/diff...not found Checking for program /usr/bin/diff...found Executing: "/usr/bin/diff" -w "/var/tmp/petsc-2v0k4k61/config.programs/diff1" "/var/tmp/petsc-2v0k4k61/config.programs/diff2" Defined make macro "DIFF" to "/usr/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /g/g15/faibuss/petsc/lib/petsc/bin/win32fe/ps...not found Unable to find programs ['ps'] providing listing of the specific search path Warning accessing /usr/ucb gives errors: can only concatenate str (not "builtin_function_or_method") to str Warning accessing /usr/usb gives errors: can only concatenate str (not "builtin_function_or_method") to str Defined make macro "PYTHON" to "/usr/tce/packages/python/python-3.8.2/bin/python3" Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/bin/m4...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/bin/m4...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/bin/m4...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/bin/m4...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/bin/m4...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/bin/m4...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/bin/m4...not found Checking for program /g/g15/faibuss/spack/bin/m4...not found Checking for program /usr/tce/packages/valgrind/valgrind-3.16.1/bin/m4...not found Checking for program /usr/tce/packages/cmake/cmake-3.14.5/bin/m4...not found Checking for program /usr/tce/packages/python/python-3.8.2/bin/m4...not found Checking for program /usr/tce/packages/cuda/cuda-11.1.1/bin/m4...not found Checking for program /usr/tce/packages/spectrum-mpi/spectrum-mpi-rolling-release-xl-2020.11.12-cuda-11.1.1/bin/m4...not found Checking for program /usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/bin/m4...not found Checking for program /usr/tcetmp/bin/m4...not found Checking for program /usr/lib64/qt-3.3/bin/m4...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/m4...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/m4...not found Checking for program /usr/condabin/m4...not found Checking for program /usr/local/bin/m4...not found Checking for program /usr/bin/m4...found Defined make macro "M4" to "/usr/bin/m4" child config.programs 2.994714 ============================================================================================= TESTING: consistencyChecks from config.packages.make(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.make(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default ============================================================================================= TESTING: configureMake from config.packages.make(config/BuildSystem/config/packages/make.py:96) Check Guesses for GNU make Executing: gmake --version stdout: GNU Make 4.2.1 Built for powerpc64le-unknown-linux-gnu Copyright (C) 1988-2016 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/bin/gmake...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/bin/gmake...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/bin/gmake...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/bin/gmake...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/bin/gmake...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/bin/gmake...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/bin/gmake...not found Checking for program /g/g15/faibuss/spack/bin/gmake...not found Checking for program /usr/tce/packages/valgrind/valgrind-3.16.1/bin/gmake...not found Checking for program /usr/tce/packages/cmake/cmake-3.14.5/bin/gmake...not found Checking for program /usr/tce/packages/python/python-3.8.2/bin/gmake...not found Checking for program /usr/tce/packages/cuda/cuda-11.1.1/bin/gmake...not found Checking for program /usr/tce/packages/spectrum-mpi/spectrum-mpi-rolling-release-xl-2020.11.12-cuda-11.1.1/bin/gmake...not found Checking for program /usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/bin/gmake...not found Checking for program /usr/tcetmp/bin/gmake...found Defined make macro "MAKE" to "/usr/tcetmp/bin/gmake" Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/bin/make...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/bin/make...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/bin/make...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/bin/make...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/bin/make...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/bin/make...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/bin/make...not found Checking for program /g/g15/faibuss/spack/bin/make...not found Checking for program /usr/tce/packages/valgrind/valgrind-3.16.1/bin/make...not found Checking for program /usr/tce/packages/cmake/cmake-3.14.5/bin/make...not found Checking for program /usr/tce/packages/python/python-3.8.2/bin/make...not found Checking for program /usr/tce/packages/cuda/cuda-11.1.1/bin/make...not found Checking for program /usr/tce/packages/spectrum-mpi/spectrum-mpi-rolling-release-xl-2020.11.12-cuda-11.1.1/bin/make...not found Checking for program /usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/bin/make...not found Checking for program /usr/tcetmp/bin/make...found Defined make macro "MAKE_USER" to "make" ============================================================================================= TESTING: setupGNUMake from config.packages.make(config/BuildSystem/config/packages/make.py:150) Setup other GNU make stuff Executing: uname -s stdout: Linux Executing: uname -s stdout: Linux Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC})" and code [] Defined make rule "libcxx" with dependencies "${LIBNAME}(${OBJSCXX})" and code [] Defined make rule "libcu" with dependencies "${LIBNAME}(${OBJSCU})" and code [] Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} Defined make macro "OMAKE_PRINTDIR " to "/usr/tcetmp/bin/gmake --print-directory" Defined make macro "OMAKE" to "/usr/tcetmp/bin/gmake --no-print-directory" Defined make macro "MAKE_PAR_OUT_FLG" to "--output-sync=recurse" ============================================================================================= TESTING: configureMakeNP from config.packages.make(config/BuildSystem/config/packages/make.py:197) check no of cores on the build machine [perhaps to do make '-j ncores'] module multiprocessing found 128 cores: using make_np = 59 Defined make macro "MAKE_NP" to "59" Defined make macro "MAKE_TEST_NP" to "49" Defined make macro "MAKE_LOAD" to "166.4" Defined make macro "NPMAX" to "128" child config.packages.make 0.072769 ============================================================================================= TESTING: consistencyChecks from config.packages.valgrind(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: configureLibrary from config.packages.valgrind(config/BuildSystem/config/package.py:895) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional valgrind Not checking for library in Compiler specific search VALGRIND: [] because no functions given to check for ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for optional headers [] in Compiler specific search VALGRIND: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in [] Found header files [] in [] Checking for headers ['valgrind/valgrind.h'] in Compiler specific search VALGRIND: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in [] Checking include with compiler flags var CPPFLAGS [] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.types /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['valgrind/valgrind.h'] in [] ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.packages.valgrind/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/PETSc.options.scalarTypes -I/var/tmp/petsc-2v0k4k61/config.packages.valgrind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.packages.valgrind/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { RUNNING_ON_VALGRIND; ; return 0; } Defined "HAVE_VALGRIND" to "1" Executing: uname -s stdout: Linux Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "valgrind/config.h" ;petscpkgver(VERSION); Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.packages.valgrind /var/tmp/petsc-2v0k4k61/config.packages.valgrind/conftest.c For valgrind need <= 3.15.0 <= child config.packages.valgrind 0.597458 ============================================================================================= TESTING: consistencyChecks from config.packages.thrust(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.thrust(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.thrust 0.001625 ============================================================================================= TESTING: consistencyChecks from config.packages.cuda(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.cuda(config/BuildSystem/config/package.py:870) ============================================================================================= TESTING: configureLibrary from config.packages.cuda(config/BuildSystem/config/packages/cuda.py:101) ================================================================================== Checking for a functional cuda Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/bin/nvcc...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/bin/nvcc...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/bin/nvcc...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/bin/nvcc...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/bin/nvcc...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/bin/nvcc...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/bin/nvcc...not found Checking for program /g/g15/faibuss/spack/bin/nvcc...not found Checking for program /usr/tce/packages/valgrind/valgrind-3.16.1/bin/nvcc...not found Checking for program /usr/tce/packages/cmake/cmake-3.14.5/bin/nvcc...not found Checking for program /usr/tce/packages/python/python-3.8.2/bin/nvcc...not found Checking for program /usr/tce/packages/cuda/cuda-11.1.1/bin/nvcc...found Defined make macro "SYSTEMNVCC" to "/usr/tce/packages/cuda/cuda-11.1.1/bin/nvcc" CUDA: DirPath not found.. skipping: /usr/tce/packages/cuda/cuda-11.1.1/lib Checking for library in Package specific search directory CUDA: ['/usr/tce/packages/cuda/cuda-11.1.1/lib64/libcufft.a', 'libcublas.a', 'libcudart.a', 'libcusparse.a', 'libcusolver.a'] Contents: ['CUDA_Toolkit_Release_Notes.txt', 'DOCS', 'EULA.txt', 'LICENSE', 'README', 'bin', 'compat', 'compute-sanitizer', 'extras', 'include', 'lib64', 'libnvvp', 'modulefiles', 'nsightee_plugins', 'nvidia', 'nvml', 'nvvm', 'samples', 'share', 'src', 'syslib64', 'targets', 'tools'] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [cublasInit cufftDestroy] in library ['/usr/tce/packages/cuda/cuda-11.1.1/lib64/libcufft.a', 'libcublas.a', 'libcudart.a', 'libcusparse.a', 'libcusolver.a'] [] ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.libraries/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -I/var/tmp/petsc-2v0k4k61/PETSc.options.scalarTypes -I/var/tmp/petsc-2v0k4k61/config.packages.valgrind -I/var/tmp/petsc-2v0k4k61/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char cublasInit(); static void _check_cublasInit() { cublasInit(); } char cufftDestroy(); static void _check_cufftDestroy() { cufftDestroy(); } int main() { _check_cublasInit(); _check_cufftDestroy();; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.libraries/conftest.o -Wl,-rpath,/usr/tce/packages/cuda/cuda-11.1.1/lib64 -L/usr/tce/packages/cuda/cuda-11.1.1/lib64 -lcufft -lcublas -lcudart -lcusparse -lcusolver -ldl Defined "HAVE_LIBCUFFT" to "1" Defined "HAVE_LIBCUBLAS" to "1" Defined "HAVE_LIBCUDART" to "1" Defined "HAVE_LIBCUSPARSE" to "1" Defined "HAVE_LIBCUSOLVER" to "1" Checking for functions [cusolverDnDpotri] in library ['/usr/tce/packages/cuda/cuda-11.1.1/lib64/libcufft.a', 'libcublas.a', 'libcudart.a', 'libcusparse.a', 'libcusolver.a'] [] ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.libraries/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -I/var/tmp/petsc-2v0k4k61/PETSc.options.scalarTypes -I/var/tmp/petsc-2v0k4k61/config.packages.valgrind -I/var/tmp/petsc-2v0k4k61/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char cusolverDnDpotri(); static void _check_cusolverDnDpotri() { cusolverDnDpotri(); } int main() { _check_cusolverDnDpotri();; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.libraries/conftest.o -Wl,-rpath,/usr/tce/packages/cuda/cuda-11.1.1/lib64 -L/usr/tce/packages/cuda/cuda-11.1.1/lib64 -lcufft -lcublas -lcudart -lcusparse -lcusolver -ldl Defined "HAVE_CUSOLVERDNDPOTRI" to "1" Checking for optional headers [] in Package specific search directory CUDA: ['/usr/tce/packages/cuda/cuda-11.1.1/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/usr/tce/packages/cuda/cuda-11.1.1/include'] Found header files [] in ['/usr/tce/packages/cuda/cuda-11.1.1/include'] Checking for headers ['cublas.h', 'cufft.h', 'cusparse.h', 'cusolverDn.h', 'thrust/version.h'] in Package specific search directory CUDA: ['/usr/tce/packages/cuda/cuda-11.1.1/include'] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['cublas.h', 'cufft.h', 'cusparse.h', 'cusolverDn.h', 'thrust/version.h'] in ['/usr/tce/packages/cuda/cuda-11.1.1/include'] Checking include with compiler flags var CPPFLAGS ['/usr/tce/packages/cuda/cuda-11.1.1/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.packages.valgrind -I/var/tmp/petsc-2v0k4k61/config.headers -I/usr/tce/packages/cuda/cuda-11.1.1/include /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Checking include with compiler flags var CPPFLAGS ['/usr/tce/packages/cuda/cuda-11.1.1/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.packages.valgrind -I/var/tmp/petsc-2v0k4k61/config.headers -I/usr/tce/packages/cuda/cuda-11.1.1/include /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Checking include with compiler flags var CPPFLAGS ['/usr/tce/packages/cuda/cuda-11.1.1/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.packages.valgrind -I/var/tmp/petsc-2v0k4k61/config.headers -I/usr/tce/packages/cuda/cuda-11.1.1/include /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Checking include with compiler flags var CPPFLAGS ['/usr/tce/packages/cuda/cuda-11.1.1/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.packages.valgrind -I/var/tmp/petsc-2v0k4k61/config.headers -I/usr/tce/packages/cuda/cuda-11.1.1/include /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Checking include with compiler flags var CPPFLAGS ['/usr/tce/packages/cuda/cuda-11.1.1/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.packages.valgrind -I/var/tmp/petsc-2v0k4k61/config.headers -I/usr/tce/packages/cuda/cuda-11.1.1/include /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['cublas.h', 'cufft.h', 'cusparse.h', 'cusolverDn.h', 'thrust/version.h'] in ['/usr/tce/packages/cuda/cuda-11.1.1/include'] Checking for size of type: teststruct ===== Checking compiler Executing: nvcc -c -o /var/tmp/petsc-2v0k4k61/config.types/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.types -g -Wno-deprecated-gpu-targets /var/tmp/petsc-2v0k4k61/config.types/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include typedef struct {double a; int b;} teststruct; char assert_sizeof[(sizeof(teststruct)==16)*2-1]; Checking for size of type: teststruct ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.types/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -I/var/tmp/petsc-2v0k4k61/PETSc.options.scalarTypes -I/var/tmp/petsc-2v0k4k61/config.packages.valgrind -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include typedef struct {double a; int b;} teststruct; char assert_sizeof[(sizeof(teststruct)==16)*2-1]; Checking if sizeof(void*) in CUDA is the same as with regular compiler Checking for size of type: void * ===== Checking compiler Executing: nvcc -c -o /var/tmp/petsc-2v0k4k61/config.types/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.types -g -Wno-deprecated-gpu-targets /var/tmp/petsc-2v0k4k61/config.types/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(void *)==8)*2-1]; Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/bin/nvcc...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/bin/nvcc...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/bin/nvcc...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/bin/nvcc...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/bin/nvcc...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/bin/nvcc...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/bin/nvcc...not found Checking for program /g/g15/faibuss/spack/bin/nvcc...not found Checking for program /usr/tce/packages/valgrind/valgrind-3.16.1/bin/nvcc...not found Checking for program /usr/tce/packages/cmake/cmake-3.14.5/bin/nvcc...not found Checking for program /usr/tce/packages/python/python-3.8.2/bin/nvcc...not found Checking for program /usr/tce/packages/cuda/cuda-11.1.1/bin/nvcc...found Defined make macro "SYSTEMNVCC" to "/usr/tce/packages/cuda/cuda-11.1.1/bin/nvcc" Checking for program /usr/tce/packages/cuda/cuda-11.1.1/extras/demo_suite/deviceQuery...not found Checking for program /g/g15/faibuss/petsc/lib/petsc/bin/win32fe/deviceQuery...not found Unable to find programs ['deviceQuery'] providing listing of the specific search path Warning accessing /usr/tce/packages/cuda/cuda-11.1.1/extras/demo_suite gives errors: can only concatenate str (not "builtin_function_or_method") to str Defined "HAVE_CUDA" to "1" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "cuda.h" ;petscpkgver(CUDA_VERSION); Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.packages.valgrind -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.packages.cuda -I/usr/tce/packages/cuda/cuda-11.1.1/include /var/tmp/petsc-2v0k4k61/config.packages.cuda/conftest.c For cuda need 7.5 <= 11.1 <= Defined "HAVE_CUDA_VERSION_11PLUS" to "1" ============================================================================================= TESTING: checkVersion from config.packages.cuda(config/BuildSystem/config/package.py:1021) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "cuda.h" ;petscpkgver(CUDA_VERSION); Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.packages.valgrind -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.packages.cuda -I/usr/tce/packages/cuda/cuda-11.1.1/include /var/tmp/petsc-2v0k4k61/config.packages.cuda/conftest.c For cuda need 7.5 <= 11.1 <= ============================================================================================= TESTING: checkSharedLibrary from config.packages.cuda(config/BuildSystem/config/package.py:953) By default we don't care about checking if the library is shared child config.packages.cuda 4.630492 ============================================================================================= TESTING: consistencyChecks from config.packages.OpenMPI(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.OpenMPI(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.OpenMPI 0.001254 Executing: uname -s stdout: Linux ============================================================================================= TESTING: consistencyChecks from config.packages.MPICH(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: alternateConfigureLibrary from config.packages.MPICH(config/BuildSystem/config/package.py:957) Called if --with-packagename=0; does nothing by default child config.packages.MPICH 0.011057 ============================================================================================= TESTING: consistencyChecks from config.packages.MPI(config/BuildSystem/config/package.py:961) Checks run on the system and currently installed packages that need to be correct for the package now being configured ============================================================================================= TESTING: checkDependencies from config.packages.MPI(config/BuildSystem/config/package.py:870) ============================================================================================= TESTING: configureLibrary from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:695) ================================================================================== Checking for a functional MPI Checking for library in Compiler specific search MPI: [] ============================================================================================= TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library [] [] ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.libraries/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -I/var/tmp/petsc-2v0k4k61/PETSc.options.scalarTypes -I/var/tmp/petsc-2v0k4k61/config.packages.valgrind -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.libraries/conftest.o -ldl Checking for optional headers [] in Compiler specific search MPI: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in [] Found header files [] in [] Checking for headers ['mpi.h'] in Compiler specific search MPI: [] ============================================================================================= TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['mpi.h'] in [] Checking include with compiler flags var CPPFLAGS [] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.packages.valgrind -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.packages.cuda /var/tmp/petsc-2v0k4k61/config.headers/conftest.c Preprocess stderr before filtering: : Preprocess stderr after filtering: : Found header files ['mpi.h'] in [] ============================================================================================= TESTING: checkMPIDistro from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:556) Determine if MPICH_NUMVERSION, OMPI_MAJOR_VERSION or MSMPI_VER exist in mpi.h Used for consistency checking of MPI installation at compile time ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -I/var/tmp/petsc-2v0k4k61/PETSc.options.scalarTypes -I/var/tmp/petsc-2v0k4k61/config.packages.valgrind -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:4:25: error: use of undeclared identifier 'I_MPI_VERSION' const char *mpich_ver = I_MPI_VERSION; ^ 1 error generated. Error while processing /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c. Source: #include "confdefs.h" #include "conffix.h" #include const char *mpich_ver = I_MPI_VERSION; int main() { ; return 0; } ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -I/var/tmp/petsc-2v0k4k61/PETSc.options.scalarTypes -I/var/tmp/petsc-2v0k4k61/config.packages.valgrind -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:4:17: error: use of undeclared identifier 'I_MPI_NUMVERSION' int mpich_ver = I_MPI_NUMVERSION; ^ 1 error generated. Error while processing /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c. Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = I_MPI_NUMVERSION; int main() { ; return 0; } ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -I/var/tmp/petsc-2v0k4k61/PETSc.options.scalarTypes -I/var/tmp/petsc-2v0k4k61/config.packages.valgrind -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:4:17: error: use of undeclared identifier 'MVAPICH2_NUMVERSION' int mpich_ver = MVAPICH2_NUMVERSION; ^ 1 error generated. Error while processing /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c. Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MVAPICH2_NUMVERSION; int main() { ; return 0; } ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -I/var/tmp/petsc-2v0k4k61/PETSc.options.scalarTypes -I/var/tmp/petsc-2v0k4k61/config.packages.valgrind -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:4:17: error: use of undeclared identifier 'MPICH_NUMVERSION' int mpich_ver = MPICH_NUMVERSION; ^ 1 error generated. Error while processing /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c. Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MPICH_NUMVERSION; int main() { ; return 0; } ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -I/var/tmp/petsc-2v0k4k61/PETSc.options.scalarTypes -I/var/tmp/petsc-2v0k4k61/config.packages.valgrind -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int ompi_major = OMPI_MAJOR_VERSION; int ompi_minor = OMPI_MINOR_VERSION; int ompi_release = OMPI_RELEASE_VERSION; int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include int ompi_major = OMPI_MAJOR_VERSION; int ompi_minor = OMPI_MINOR_VERSION; int ompi_release = OMPI_RELEASE_VERSION; Executing: mpicc -E -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.packages.valgrind -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.packages.cuda -I/var/tmp/petsc-2v0k4k61/config.packages.MPI /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c Defined "HAVE_OMPI_MAJOR_VERSION" to "10" Defined "HAVE_OMPI_MINOR_VERSION" to "03" Defined "HAVE_OMPI_RELEASE_VERSION" to "01" ============================================================================================= TESTING: configureMPI2 from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:331) Check for functions added to the interface in MPI-2 ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -I/var/tmp/petsc-2v0k4k61/PETSc.options.scalarTypes -I/var/tmp/petsc-2v0k4k61/config.packages.valgrind -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:6:35: warning: if statement has empty body [-Wempty-body] int flag;if (MPI_Finalized(&flag)); ^ /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:6:35: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int flag;if (MPI_Finalized(&flag)); ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.o -ldl Defined "HAVE_MPI_FINALIZED" to "1" ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -I/var/tmp/petsc-2v0k4k61/PETSc.options.scalarTypes -I/var/tmp/petsc-2v0k4k61/config.packages.valgrind -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:6:71: warning: if statement has empty body [-Wempty-body] if (MPI_Allreduce(MPI_IN_PLACE,0, 1, MPI_INT, MPI_SUM, MPI_COMM_SELF)); ^ /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:6:71: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Allreduce(MPI_IN_PLACE,0, 1, MPI_INT, MPI_SUM, MPI_COMM_SELF)); ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.o -ldl Defined "HAVE_MPI_IN_PLACE" to "1" ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -I/var/tmp/petsc-2v0k4k61/PETSc.options.scalarTypes -I/var/tmp/petsc-2v0k4k61/config.packages.valgrind -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:6:94: warning: incompatible integer to pointer conversion initializing 'MPI_Datatype' (aka 'struct ompi_datatype_t *') with an expression of type 'int' [-Wint-conversion] int count=2; int blocklens[2]={0,1}; MPI_Aint indices[2]={0,1}; MPI_Datatype old_types[2]={0,1}; MPI_Datatype *newtype = 0; ^ /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:7:121: warning: if statement has empty body [-Wempty-body] if (MPI_Type_create_struct(count, blocklens, indices, old_types, newtype)); ^ /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:7:121: note: put the semicolon on a separate line to silence this warning 2 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int count=2; int blocklens[2]={0,1}; MPI_Aint indices[2]={0,1}; MPI_Datatype old_types[2]={0,1}; MPI_Datatype *newtype = 0; if (MPI_Type_create_struct(count, blocklens, indices, old_types, newtype)); ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.o -ldl ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -I/var/tmp/petsc-2v0k4k61/PETSc.options.scalarTypes -I/var/tmp/petsc-2v0k4k61/config.packages.valgrind -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:6:131: warning: if statement has empty body [-Wempty-body] MPI_Comm_errhandler_fn * p_err_fun = 0; MPI_Errhandler * p_errhandler = 0; if (MPI_Comm_create_errhandler(p_err_fun,p_errhandler)); ^ /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:6:131: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm_errhandler_fn * p_err_fun = 0; MPI_Errhandler * p_errhandler = 0; if (MPI_Comm_create_errhandler(p_err_fun,p_errhandler)); ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.o -ldl ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -I/var/tmp/petsc-2v0k4k61/PETSc.options.scalarTypes -I/var/tmp/petsc-2v0k4k61/config.packages.valgrind -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:6:63: warning: if statement has empty body [-Wempty-body] if (MPI_Comm_set_errhandler(MPI_COMM_WORLD,MPI_ERRORS_RETURN)); ^ /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:6:63: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_set_errhandler(MPI_COMM_WORLD,MPI_ERRORS_RETURN)); ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.o -ldl ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -I/var/tmp/petsc-2v0k4k61/PETSc.options.scalarTypes -I/var/tmp/petsc-2v0k4k61/config.packages.valgrind -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:6:49: warning: if statement has empty body [-Wempty-body] if (MPI_Reduce_local(0, 0, 0, MPI_INT, MPI_SUM));; ^ /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:6:49: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Reduce_local(0, 0, 0, MPI_INT, MPI_SUM));; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.o -ldl Defined "HAVE_MPI_REDUCE_LOCAL" to "1" ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -I/var/tmp/petsc-2v0k4k61/PETSc.options.scalarTypes -I/var/tmp/petsc-2v0k4k61/config.packages.valgrind -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:6:102: warning: if statement has empty body [-Wempty-body] char version[MPI_MAX_LIBRARY_VERSION_STRING];int verlen;if (MPI_Get_library_version(version,&verlen)); ^ /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:6:102: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { char version[MPI_MAX_LIBRARY_VERSION_STRING];int verlen;if (MPI_Get_library_version(version,&verlen)); ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.o -ldl Defined "HAVE_MPI_GET_LIBRARY_VERSION" to "1" ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -I/var/tmp/petsc-2v0k4k61/PETSc.options.scalarTypes -I/var/tmp/petsc-2v0k4k61/config.packages.valgrind -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:6:94: warning: if statement has empty body [-Wempty-body] int base[100]; MPI_Win win; if (MPI_Win_create(base,100,4,MPI_INFO_NULL,MPI_COMM_WORLD,&win)); ^ /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:6:94: note: put the semicolon on a separate line to silence this warning 1 warning generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int base[100]; MPI_Win win; if (MPI_Win_create(base,100,4,MPI_INFO_NULL,MPI_COMM_WORLD,&win)); ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.o -ldl Defined "HAVE_MPI_WIN_CREATE" to "1" Defined "HAVE_MPI_ONE_SIDED" to "1" ============================================================================================= TESTING: configureMPI3 from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:376) Check for functions added to the interface in MPI-3 ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -I/var/tmp/petsc-2v0k4k61/PETSc.options.scalarTypes -I/var/tmp/petsc-2v0k4k61/config.packages.valgrind -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:7:112: warning: if statement has empty body [-Wempty-body] if (MPI_Comm_split_type(MPI_COMM_WORLD, MPI_COMM_TYPE_SHARED, 0, MPI_INFO_NULL, &scomm)); ^ /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:7:112: note: put the semicolon on a separate line to silence this warning /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:8:111: warning: if statement has empty body [-Wempty-body] if (MPI_Win_allocate_shared(size,disp_unit,MPI_INFO_NULL,MPI_COMM_WORLD,&baseptr,&win)); ^ /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:8:111: note: put the semicolon on a separate line to silence this warning /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:9:82: warning: if statement has empty body [-Wempty-body] if (MPI_Win_shared_query(win,0,&size,&disp_unit,&baseptr)); ^ /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:9:82: note: put the semicolon on a separate line to silence this warning 3 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm scomm; MPI_Aint size=128; int disp_unit=8,*baseptr; MPI_Win win; if (MPI_Comm_split_type(MPI_COMM_WORLD, MPI_COMM_TYPE_SHARED, 0, MPI_INFO_NULL, &scomm)); if (MPI_Win_allocate_shared(size,disp_unit,MPI_INFO_NULL,MPI_COMM_WORLD,&baseptr,&win)); if (MPI_Win_shared_query(win,0,&size,&disp_unit,&baseptr)); ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.o -ldl Defined "HAVE_MPI_PROCESS_SHARED_MEMORY" to "1" ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -I/var/tmp/petsc-2v0k4k61/PETSc.options.scalarTypes -I/var/tmp/petsc-2v0k4k61/config.packages.valgrind -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:7:96: warning: if statement has empty body [-Wempty-body] if (MPI_Iscatter(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); ^ /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:7:96: note: put the semicolon on a separate line to silence this warning /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:8:110: warning: if statement has empty body [-Wempty-body] if (MPI_Iscatterv(&send,counts,displs,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); ^ /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:8:110: note: put the semicolon on a separate line to silence this warning /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:9:96: warning: if statement has empty body [-Wempty-body] if (MPI_Igather(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); ^ /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:9:96: note: put the semicolon on a separate line to silence this warning /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:10:109: warning: if statement has empty body [-Wempty-body] if (MPI_Igatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,0,MPI_COMM_WORLD,&req)); ^ /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:10:109: note: put the semicolon on a separate line to silence this warning /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:11:97: warning: if statement has empty body [-Wempty-body] if (MPI_Iallgather(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); ^ /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:11:97: note: put the semicolon on a separate line to silence this warning /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:12:110: warning: if statement has empty body [-Wempty-body] if (MPI_Iallgatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,MPI_COMM_WORLD,&req)); ^ /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:12:110: note: put the semicolon on a separate line to silence this warning /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:13:96: warning: if statement has empty body [-Wempty-body] if (MPI_Ialltoall(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); ^ /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:13:96: note: put the semicolon on a separate line to silence this warning 7 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int send=0,recv,counts[2]={1,1},displs[2]={1,2}; MPI_Request req; if (MPI_Iscatter(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Iscatterv(&send,counts,displs,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Igather(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Igatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Iallgather(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); if (MPI_Iallgatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,MPI_COMM_WORLD,&req)); if (MPI_Ialltoall(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.o -ldl Defined "HAVE_MPI_NONBLOCKING_COLLECTIVES" to "1" ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -I/var/tmp/petsc-2v0k4k61/PETSc.options.scalarTypes -I/var/tmp/petsc-2v0k4k61/config.packages.valgrind -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:8:145: warning: if statement has empty body [-Wempty-body] if (MPI_Dist_graph_create_adjacent(MPI_COMM_WORLD,0,0,MPI_WEIGHTS_EMPTY,0,0,MPI_WEIGHTS_EMPTY,MPI_INFO_NULL,0,&distcomm)); ^ /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:8:145: note: put the semicolon on a separate line to silence this warning /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:9:89: warning: if statement has empty body [-Wempty-body] if (MPI_Neighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm)); ^ /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:9:89: note: put the semicolon on a separate line to silence this warning /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:10:95: warning: if statement has empty body [-Wempty-body] if (MPI_Ineighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm,&req)); ^ /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:10:95: note: put the semicolon on a separate line to silence this warning 3 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm distcomm; MPI_Request req; if (MPI_Dist_graph_create_adjacent(MPI_COMM_WORLD,0,0,MPI_WEIGHTS_EMPTY,0,0,MPI_WEIGHTS_EMPTY,MPI_INFO_NULL,0,&distcomm)); if (MPI_Neighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm)); if (MPI_Ineighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm,&req)); ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.o -ldl Defined "HAVE_MPI_NEIGHBORHOOD_COLLECTIVES" to "1" ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -I/var/tmp/petsc-2v0k4k61/PETSc.options.scalarTypes -I/var/tmp/petsc-2v0k4k61/config.packages.valgrind -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(MPIX_CUDA_AWARE_SUPPORT) && MPIX_CUDA_AWARE_SUPPORT #else #error This OpenMPI is not CUDA-aware #endif int main() { ; return 0; } Defined "HAVE_MPI_GPU_AWARE" to "1" ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -I/var/tmp/petsc-2v0k4k61/PETSc.options.scalarTypes -I/var/tmp/petsc-2v0k4k61/config.packages.valgrind -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:6:104: warning: if statement has empty body [-Wempty-body] int ptr[1]; MPI_Win win; if (MPI_Get_accumulate(ptr,1,MPI_INT,ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_SUM,win)); ^ /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:6:104: note: put the semicolon on a separate line to silence this warning /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:6:99: warning: variable 'win' is uninitialized when used here [-Wuninitialized] int ptr[1]; MPI_Win win; if (MPI_Get_accumulate(ptr,1,MPI_INT,ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_SUM,win)); ^~~ /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:6:24: note: initialize the variable 'win' to silence this warning int ptr[1]; MPI_Win win; if (MPI_Get_accumulate(ptr,1,MPI_INT,ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_SUM,win)); ^ = NULL 2 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ptr[1]; MPI_Win win; if (MPI_Get_accumulate(ptr,1,MPI_INT,ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_SUM,win)); ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.o -ldl Defined "HAVE_MPI_GET_ACCUMULATE" to "1" ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -I/var/tmp/petsc-2v0k4k61/PETSc.options.scalarTypes -I/var/tmp/petsc-2v0k4k61/config.packages.valgrind -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:6:94: warning: if statement has empty body [-Wempty-body] int ptr[1]; MPI_Win win; MPI_Request req; if (MPI_Rget(ptr,1,MPI_INT,0,1,1,MPI_INT,win,&req)); ^ /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:6:94: note: put the semicolon on a separate line to silence this warning /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:6:84: warning: variable 'win' is uninitialized when used here [-Wuninitialized] int ptr[1]; MPI_Win win; MPI_Request req; if (MPI_Rget(ptr,1,MPI_INT,0,1,1,MPI_INT,win,&req)); ^~~ /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:6:24: note: initialize the variable 'win' to silence this warning int ptr[1]; MPI_Win win; MPI_Request req; if (MPI_Rget(ptr,1,MPI_INT,0,1,1,MPI_INT,win,&req)); ^ = NULL 2 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ptr[1]; MPI_Win win; MPI_Request req; if (MPI_Rget(ptr,1,MPI_INT,0,1,1,MPI_INT,win,&req)); ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.o -ldl Defined "HAVE_MPI_RGET" to "1" ============================================================================================= TESTING: configureMPIEXEC from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:176) Checking for location of mpiexec Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/bin/mpiexec...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/bin/mpirun...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/bin/mprun...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/bin/srun...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/bin/mpiexec...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/bin/mpirun...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/bin/mprun...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/bin/srun...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/bin/mpiexec...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/bin/mpirun...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/bin/mprun...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/bin/srun...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/bin/mpiexec...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/bin/mpirun...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/bin/mprun...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/bin/srun...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/bin/mpiexec...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/bin/mpirun...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/bin/mprun...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/bin/srun...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/bin/mpiexec...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/bin/mpirun...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/bin/mprun...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/bin/srun...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/bin/mpiexec...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/bin/mpirun...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/bin/mprun...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/bin/srun...not found Checking for program /g/g15/faibuss/spack/bin/mpiexec...not found Checking for program /g/g15/faibuss/spack/bin/mpirun...not found Checking for program /g/g15/faibuss/spack/bin/mprun...not found Checking for program /g/g15/faibuss/spack/bin/srun...not found Checking for program /usr/tce/packages/valgrind/valgrind-3.16.1/bin/mpiexec...not found Checking for program /usr/tce/packages/valgrind/valgrind-3.16.1/bin/mpirun...not found Checking for program /usr/tce/packages/valgrind/valgrind-3.16.1/bin/mprun...not found Checking for program /usr/tce/packages/valgrind/valgrind-3.16.1/bin/srun...not found Checking for program /usr/tce/packages/cmake/cmake-3.14.5/bin/mpiexec...not found Checking for program /usr/tce/packages/cmake/cmake-3.14.5/bin/mpirun...not found Checking for program /usr/tce/packages/cmake/cmake-3.14.5/bin/mprun...not found Checking for program /usr/tce/packages/cmake/cmake-3.14.5/bin/srun...not found Checking for program /usr/tce/packages/python/python-3.8.2/bin/mpiexec...not found Checking for program /usr/tce/packages/python/python-3.8.2/bin/mpirun...not found Checking for program /usr/tce/packages/python/python-3.8.2/bin/mprun...not found Checking for program /usr/tce/packages/python/python-3.8.2/bin/srun...not found Checking for program /usr/tce/packages/cuda/cuda-11.1.1/bin/mpiexec...not found Checking for program /usr/tce/packages/cuda/cuda-11.1.1/bin/mpirun...not found Checking for program /usr/tce/packages/cuda/cuda-11.1.1/bin/mprun...not found Checking for program /usr/tce/packages/cuda/cuda-11.1.1/bin/srun...not found Checking for program /usr/tce/packages/spectrum-mpi/spectrum-mpi-rolling-release-xl-2020.11.12-cuda-11.1.1/bin/mpiexec...found Running Executable with threads to time it out at 60 Executing: mpiexec -help all Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/bin/mpiexec...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/bin/mpiexec...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/bin/mpiexec...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/bin/mpiexec...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/bin/mpiexec...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/bin/mpiexec...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/bin/mpiexec...not found Checking for program /g/g15/faibuss/spack/bin/mpiexec...not found Checking for program /usr/tce/packages/valgrind/valgrind-3.16.1/bin/mpiexec...not found Checking for program /usr/tce/packages/cmake/cmake-3.14.5/bin/mpiexec...not found Checking for program /usr/tce/packages/python/python-3.8.2/bin/mpiexec...not found Checking for program /usr/tce/packages/cuda/cuda-11.1.1/bin/mpiexec...not found Checking for program /usr/tce/packages/spectrum-mpi/spectrum-mpi-rolling-release-xl-2020.11.12-cuda-11.1.1/bin/mpiexec...found Defined make macro "MPIEXECEXECUTABLE" to "/usr/tce/packages/spectrum-mpi/spectrum-mpi-rolling-release-xl-2020.11.12-cuda-11.1.1/bin/mpiexec" Running Executable with threads to time it out at 60 Executing: mpiexec -n 1 printenv Unable to run mpiexec with option "-n 1 printenv" This could be ok, some MPI implementations such as SGI produce a non-zero status with non-MPI programs ERROR: Unexpected use of mpirun on CORAL login node lassen708 by faibuss! ********************************************************************** Normally jsrun or lrun is used to launch parallel jobs under JSM. Did you accidently run a CORAL EA script/command on this cluster? LC has banned mpirun on login/launch nodes as of 7/17/19. This is to prevent users from accidently taking down the whole machine. If you have a good reason to use mpirun, you can: 1) Use mpirun on a backend node (e.g., use bsub or lalloc) 2) Use an hostfile (please don't take down this node doing this!) 3) Get an exception via John Gyllenhaal (4-5485, gyllen@llnl.gov) Documentation at: https://hpc.llnl.gov/training/tutorials/using-lcs-sierra-system https://lc.llnl.gov/confluence/display/SIERRA/Sierra+Systems Please contact John Gyllenhaal (4-5485, gyllen@llnl.gov) or the LC Hotline for more information or help. (Error message from /usr/tcetmp/bin/mpirun_check_llnl) ********************************************************************** Defined make macro "MPIEXEC" to "mpiexec" Checking for program /usr/libexec/ApplicationFirewall/socketfilterfw...not found Checking for program /g/g15/faibuss/petsc/lib/petsc/bin/win32fe/socketfilterfw...not found Unable to find programs ['socketfilterfw'] providing listing of the specific search path Warning accessing /usr/libexec/ApplicationFirewall gives errors: can only concatenate str (not "builtin_function_or_method") to str Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/bin/hostname...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/bin/hostname...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/bin/hostname...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/bin/hostname...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/bin/hostname...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/bin/hostname...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/bin/hostname...not found Checking for program /g/g15/faibuss/spack/bin/hostname...not found Checking for program /usr/tce/packages/valgrind/valgrind-3.16.1/bin/hostname...not found Checking for program /usr/tce/packages/cmake/cmake-3.14.5/bin/hostname...not found Checking for program /usr/tce/packages/python/python-3.8.2/bin/hostname...not found Checking for program /usr/tce/packages/cuda/cuda-11.1.1/bin/hostname...not found Checking for program /usr/tce/packages/spectrum-mpi/spectrum-mpi-rolling-release-xl-2020.11.12-cuda-11.1.1/bin/hostname...not found Checking for program /usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/bin/hostname...not found Checking for program /usr/tcetmp/bin/hostname...not found Checking for program /usr/lib64/qt-3.3/bin/hostname...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/hostname...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/hostname...not found Checking for program /usr/condabin/hostname...not found Checking for program /usr/local/bin/hostname...not found Checking for program /usr/bin/hostname...found Defined make macro "HOSTNAME" to "hostname" Running Executable with threads to time it out at 60 Executing: hostname stdout: lassen708 Return code from hostname: 0 Hostname works, running network checks Checking for program /sbin/ping...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/emacs-27.1-q6umuahfcbkpunxn2caa2ry6fq6s3oj3/bin/ping...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/pcre-8.44-epolbofwm6awahpaurotmt3qbew3pjsj/bin/ping...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/ncurses-6.2-w4j5ox5h3xyarcrmy5fxrz5uwavrnfge/bin/ping...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libxml2-2.9.10-e6zhvfizsxh2xychvm5asv3sffixaa2t/bin/ping...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/xz-5.2.5-x6di3gbtgvdnc4n3rt4d23ieetvjlt3b/bin/ping...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libiconv-1.16-5py5n345iqizs234ziztumnbpjq2b7ou/bin/ping...not found Checking for program /g/g15/faibuss/spack/opt/spack/linux-rhel7-power8le/gcc-4.9.3/libjpeg-turbo-2.0.4-hnmrqh5vmmgm7xqqgm3u4dvd7l4x6f4g/bin/ping...not found Checking for program /g/g15/faibuss/spack/bin/ping...not found Checking for program /usr/tce/packages/valgrind/valgrind-3.16.1/bin/ping...not found Checking for program /usr/tce/packages/cmake/cmake-3.14.5/bin/ping...not found Checking for program /usr/tce/packages/python/python-3.8.2/bin/ping...not found Checking for program /usr/tce/packages/cuda/cuda-11.1.1/bin/ping...not found Checking for program /usr/tce/packages/spectrum-mpi/spectrum-mpi-rolling-release-xl-2020.11.12-cuda-11.1.1/bin/ping...not found Checking for program /usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/bin/ping...not found Checking for program /usr/tcetmp/bin/ping...not found Checking for program /usr/lib64/qt-3.3/bin/ping...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/etc/ping...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1.0.9/linux3.10-glibc2.17-ppc64le-csm/bin/ping...not found Checking for program /usr/condabin/ping...not found Checking for program /usr/local/bin/ping...not found Checking for program /usr/bin/ping...found Defined make macro "PING" to "ping" Executing: uname -s stdout: Linux Running Executable with threads to time it out at 60 Executing: ping -c 2 lassen708 stdout: PING lassen708.coral.llnl.gov (192.168.66.200) 56(84) bytes of data. 64 bytes from lassen708.coral.llnl.gov (192.168.66.200): icmp_seq=1 ttl=64 time=0.059 ms 64 bytes from lassen708.coral.llnl.gov (192.168.66.200): icmp_seq=2 ttl=64 time=0.017 ms --- lassen708.coral.llnl.gov ping statistics --- 2 packets transmitted, 2 received, 0% packet loss, time 1027ms rtt min/avg/max/mdev = 0.017/0.038/0.059/0.021 ms Return code from ping: 0 ============================================================================================= ======== Checking running linked program ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -I/var/tmp/petsc-2v0k4k61/PETSc.options.scalarTypes -I/var/tmp/petsc-2v0k4k61/config.packages.valgrind -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Init(0,0); MPI_Finalize(); ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.o -ldl Testing executable /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest to see if it can be run Executing: mpiexec -n 1 /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest Running Executable with threads to time it out at 60 Executing: mpiexec -n 1 /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest ERROR while running executable: Could not execute "['mpiexec -n 1 /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest']": ERROR: Unexpected use of mpirun on CORAL login node lassen708 by faibuss! ********************************************************************** Normally jsrun or lrun is used to launch parallel jobs under JSM. Did you accidently run a CORAL EA script/command on this cluster? LC has banned mpirun on login/launch nodes as of 7/17/19. This is to prevent users from accidently taking down the whole machine. If you have a good reason to use mpirun, you can: 1) Use mpirun on a backend node (e.g., use bsub or lalloc) 2) Use an hostfile (please don't take down this node doing this!) 3) Get an exception via John Gyllenhaal (4-5485, gyllen@llnl.gov) Documentation at: https://hpc.llnl.gov/training/tutorials/using-lcs-sierra-system https://lc.llnl.gov/confluence/display/SIERRA/Sierra+Systems Please contact John Gyllenhaal (4-5485, gyllen@llnl.gov) or the LC Hotline for more information or help. (Error message from /usr/tcetmp/bin/mpirun_check_llnl) ********************************************************************** ============================================================================================= TESTING: configureMPITypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:423) Checking for MPI Datatype handles ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -I/var/tmp/petsc-2v0k4k61/PETSc.options.scalarTypes -I/var/tmp/petsc-2v0k4k61/config.packages.valgrind -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_LONG_DOUBLE, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } ======== Checking running linked program ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -I/var/tmp/petsc-2v0k4k61/PETSc.options.scalarTypes -I/var/tmp/petsc-2v0k4k61/config.packages.valgrind -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_LONG_DOUBLE, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.o -ldl Testing executable /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest to see if it can be run Executing: mpiexec -n 1 /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest Running Executable with threads to time it out at 60 Executing: mpiexec -n 1 /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest ERROR while running executable: Could not execute "['mpiexec -n 1 /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest']": ERROR: Unexpected use of mpirun on CORAL login node lassen708 by faibuss! ********************************************************************** Normally jsrun or lrun is used to launch parallel jobs under JSM. Did you accidently run a CORAL EA script/command on this cluster? LC has banned mpirun on login/launch nodes as of 7/17/19. This is to prevent users from accidently taking down the whole machine. If you have a good reason to use mpirun, you can: 1) Use mpirun on a backend node (e.g., use bsub or lalloc) 2) Use an hostfile (please don't take down this node doing this!) 3) Get an exception via John Gyllenhaal (4-5485, gyllen@llnl.gov) Documentation at: https://hpc.llnl.gov/training/tutorials/using-lcs-sierra-system https://lc.llnl.gov/confluence/display/SIERRA/Sierra+Systems Please contact John Gyllenhaal (4-5485, gyllen@llnl.gov) or the LC Hotline for more information or help. (Error message from /usr/tcetmp/bin/mpirun_check_llnl) ********************************************************************** ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -I/var/tmp/petsc-2v0k4k61/PETSc.options.scalarTypes -I/var/tmp/petsc-2v0k4k61/config.packages.valgrind -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_INT64_T, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } ======== Checking running linked program ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -I/var/tmp/petsc-2v0k4k61/PETSc.options.scalarTypes -I/var/tmp/petsc-2v0k4k61/config.packages.valgrind -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_INT64_T, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.o -ldl Testing executable /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest to see if it can be run Executing: mpiexec -n 1 /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest Running Executable with threads to time it out at 60 Executing: mpiexec -n 1 /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest ERROR while running executable: Could not execute "['mpiexec -n 1 /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest']": ERROR: Unexpected use of mpirun on CORAL login node lassen708 by faibuss! ********************************************************************** Normally jsrun or lrun is used to launch parallel jobs under JSM. Did you accidently run a CORAL EA script/command on this cluster? LC has banned mpirun on login/launch nodes as of 7/17/19. This is to prevent users from accidently taking down the whole machine. If you have a good reason to use mpirun, you can: 1) Use mpirun on a backend node (e.g., use bsub or lalloc) 2) Use an hostfile (please don't take down this node doing this!) 3) Get an exception via John Gyllenhaal (4-5485, gyllen@llnl.gov) Documentation at: https://hpc.llnl.gov/training/tutorials/using-lcs-sierra-system https://lc.llnl.gov/confluence/display/SIERRA/Sierra+Systems Please contact John Gyllenhaal (4-5485, gyllen@llnl.gov) or the LC Hotline for more information or help. (Error message from /usr/tcetmp/bin/mpirun_check_llnl) ********************************************************************** ===== Checking compiler Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -I/var/tmp/petsc-2v0k4k61/PETSc.options.scalarTypes -I/var/tmp/petsc-2v0k4k61/config.packages.valgrind -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_C_DOUBLE_COMPLEX, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } ======== Checking running linked program ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -I/var/tmp/petsc-2v0k4k61/PETSc.options.scalarTypes -I/var/tmp/petsc-2v0k4k61/config.packages.valgrind -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_C_DOUBLE_COMPLEX, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.o -ldl Testing executable /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest to see if it can be run Executing: mpiexec -n 1 /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest Running Executable with threads to time it out at 60 Executing: mpiexec -n 1 /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest ERROR while running executable: Could not execute "['mpiexec -n 1 /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest']": ERROR: Unexpected use of mpirun on CORAL login node lassen708 by faibuss! ********************************************************************** Normally jsrun or lrun is used to launch parallel jobs under JSM. Did you accidently run a CORAL EA script/command on this cluster? LC has banned mpirun on login/launch nodes as of 7/17/19. This is to prevent users from accidently taking down the whole machine. If you have a good reason to use mpirun, you can: 1) Use mpirun on a backend node (e.g., use bsub or lalloc) 2) Use an hostfile (please don't take down this node doing this!) 3) Get an exception via John Gyllenhaal (4-5485, gyllen@llnl.gov) Documentation at: https://hpc.llnl.gov/training/tutorials/using-lcs-sierra-system https://lc.llnl.gov/confluence/display/SIERRA/Sierra+Systems Please contact John Gyllenhaal (4-5485, gyllen@llnl.gov) or the LC Hotline for more information or help. (Error message from /usr/tcetmp/bin/mpirun_check_llnl) ********************************************************************** ============================================================================================= TESTING: SGIMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:484) Returns true if SGI MPI is used Checking for functions [MPI_SGI_barrier] in library [] [] ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.libraries/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -I/var/tmp/petsc-2v0k4k61/PETSc.options.scalarTypes -I/var/tmp/petsc-2v0k4k61/config.packages.valgrind -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_SGI_barrier(); static void _check_MPI_SGI_barrier() { MPI_SGI_barrier(); } int main() { _check_MPI_SGI_barrier();; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.libraries/conftest.o -ldl Possible ERROR while running linker: exit code 1 stderr: /var/tmp/petsc-2v0k4k61/config.libraries/conftest.o: In function `_check_MPI_SGI_barrier': /var/tmp/petsc-2v0k4k61/config.libraries/conftest.c:5: undefined reference to `MPI_SGI_barrier' SGI MPI test failure ============================================================================================= TESTING: CxxMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:494) Make sure C++ can compile and link Checking for header mpi.h Checking for C++ MPI_Finalize() Checking for functions [MPI_Finalize] in library [] [] ===== Checking linker Executing: mpiCC -c -o /var/tmp/petsc-2v0k4k61/config.libraries/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -I/var/tmp/petsc-2v0k4k61/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -+ -std=gnu++14 /var/tmp/petsc-2v0k4k61/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_MPI_Finalize() { int ierr; ierr = MPI_Finalize();; } int main() { _check_MPI_Finalize();; return 0; } Executing: mpiCC -o /var/tmp/petsc-2v0k4k61/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -+ /var/tmp/petsc-2v0k4k61/config.libraries/conftest.o -ldl ============================================================================================= TESTING: FortranMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:510) Make sure fortran include [mpif.h] and library symbols are found Checking for fortran mpi_init() Checking for functions [] in library [] [] ===== Checking linker Executing: mpifort -c -o /var/tmp/petsc-2v0k4k61/config.libraries/conftest.o -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.libraries -g /var/tmp/petsc-2v0k4k61/config.libraries/conftest.F90 Possible ERROR while running compiler: stderr: ** main === End of Compilation 1 === 1501-510 Compilation successful for file conftest.F90. Source: program main #include "mpif.h" integer ierr call mpi_init(ierr) end Executing: mpifort -o /var/tmp/petsc-2v0k4k61/config.libraries/conftest -g /var/tmp/petsc-2v0k4k61/config.libraries/conftest.o -ldl Checking for mpi.mod Checking for functions [] in library [] [] ===== Checking linker Executing: mpifort -c -o /var/tmp/petsc-2v0k4k61/config.libraries/conftest.o -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.libraries -g /var/tmp/petsc-2v0k4k61/config.libraries/conftest.F90 Possible ERROR while running compiler: stderr: ** main === End of Compilation 1 === 1501-510 Compilation successful for file conftest.F90. Source: program main use mpi integer ierr,rank call mpi_init(ierr) call mpi_comm_rank(MPI_COMM_WORLD,rank,ierr) end Executing: mpifort -o /var/tmp/petsc-2v0k4k61/config.libraries/conftest -g /var/tmp/petsc-2v0k4k61/config.libraries/conftest.o -ldl Defined "HAVE_MPI_F90MODULE" to "1" ============================================================================================= TESTING: configureIO from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:532) Check for the functions in MPI/IO - Define HAVE_MPIIO if they are present - Some older MPI 1 implementations are missing these ===== Checking linker Executing: mpicc -c -o /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.compilers -I/var/tmp/petsc-2v0k4k61/config.utilities.closure -I/var/tmp/petsc-2v0k4k61/config.compilersFortran -I/var/tmp/petsc-2v0k4k61/config.headers -I/var/tmp/petsc-2v0k4k61/config.utilities.cacheDetails -I/var/tmp/petsc-2v0k4k61/config.functions -I/var/tmp/petsc-2v0k4k61/config.utilities.featureTestMacros -I/var/tmp/petsc-2v0k4k61/config.utilities.missing -I/var/tmp/petsc-2v0k4k61/PETSc.options.scalarTypes -I/var/tmp/petsc-2v0k4k61/config.packages.valgrind -I/var/tmp/petsc-2v0k4k61/config.types -I/var/tmp/petsc-2v0k4k61/config.libraries -I/var/tmp/petsc-2v0k4k61/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:7:48: warning: if statement has empty body [-Wempty-body] if (MPI_Type_get_extent(MPI_INT, &lb, &extent)); ^ /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:7:48: note: put the semicolon on a separate line to silence this warning /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:12:54: warning: if statement has empty body [-Wempty-body] if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); ^ /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:12:54: note: put the semicolon on a separate line to silence this warning /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:14:102: warning: if statement has empty body [-Wempty-body] if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)); ^ /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:14:102: note: put the semicolon on a separate line to silence this warning /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:18:61: warning: if statement has empty body [-Wempty-body] if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); ^ /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:18:61: note: put the semicolon on a separate line to silence this warning /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:20:101: warning: if statement has empty body [-Wempty-body] if (MPI_File_open(MPI_COMM_SELF, "", 0, info, &fh)); ^ /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:20:101: note: put the semicolon on a separate line to silence this warning /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:22:74: warning: if statement has empty body [-Wempty-body] if (MPI_File_close(&fh)); ^ /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:22:74: note: put the semicolon on a separate line to silence this warning /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:18:55: warning: variable 'info' is uninitialized when used here [-Wuninitialized] if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); ^~~~ /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:17:14: note: initialize the variable 'info' to silence this warning MPI_Info info; ^ = NULL /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:12:24: warning: variable 'fh' is uninitialized when used here [-Wuninitialized] if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); ^~ /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:9:61: note: initialize the variable 'fh' to silence this warning MPI_File fh; ^ = NULL /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:18:27: warning: variable 'disp' is uninitialized when used here [-Wuninitialized] if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); ^~~~ /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:16:65: note: initialize the variable 'disp' to silence this warning MPI_Offset disp; ^ = 0 /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:14:76: warning: variable 'buf' is uninitialized when used here [-Wuninitialized] if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)); ^~~ /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.c:10:10: note: initialize the variable 'buf' to silence this warning void *buf; ^ = NULL 10 warnings generated. Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Aint lb, extent; if (MPI_Type_get_extent(MPI_INT, &lb, &extent)); MPI_File fh; void *buf; MPI_Status status; if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)); MPI_Offset disp; MPI_Info info; if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); if (MPI_File_open(MPI_COMM_SELF, "", 0, info, &fh)); if (MPI_File_close(&fh)); ; return 0; } Executing: mpicc -o /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g3 /var/tmp/petsc-2v0k4k61/config.packages.MPI/conftest.o -ldl Defined "HAVE_MPIIO" to "1" ============================================================================================= TESTING: findMPIInc from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:636) Find MPI include paths from "mpicc -show" and use with CUDAC_FLAGS Executing: mpicc -show stdout: /usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/bin/xlc_r -I/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/include -pthread -L/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib -lmpiprofilesupport -lmpi_ibm -Wl,-rpath,/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/lib compilers: Checking arg /usr/tce/packages/xl/xl-2020.11.12-cuda-11.1.1/bin/xlc_r compilers: Checking arg -I/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/include compilers: Found include option: -I/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/include Executing: nvcc -c -o /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.o -I/var/tmp/petsc-2v0k4k61/config.setCompilers -I/var/tmp/petsc-2v0k4k61/config.types -g -std=c++14 -I/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/include -Wno-deprecated-gpu-targets /var/tmp/petsc-2v0k4k61/config.setCompilers/conftest.cu Possible ERROR while running compiler: stderr: nvcc warning : The -std=c++14 flag is not supported with the configured host compiler. Flag will be ignored. Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -I/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/include due to nvcc warning : The -std=c++14 flag is not supported with the configured host compiler. Flag will be ignored. **** Configure header /var/tmp/petsc-2v0k4k61/confdefs.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #define PETSC_Alignx(a,b) #define PETSC_CLANGUAGE_C 1 #define PETSC_CXX_INLINE inline #define PETSC_CXX_RESTRICT __restrict #define PETSC_C_INLINE inline #define PETSC_C_RESTRICT __restrict #define PETSC_FORTRAN_CHARLEN_T int #define PETSC_FORTRAN_TYPE_INITIALIZE = -2 #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_BZERO 1 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_CUDA 1 #define PETSC_HAVE_CUDA_VERSION_11PLUS 1 #define PETSC_HAVE_CUSOLVERDNDPOTRI 1 #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_HAVE_CXX_DIALECT_CXX11 1 #define PETSC_HAVE_CXX_DIALECT_CXX14 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_HAVE_ERF 1 #define PETSC_HAVE_F90_ASSUMED_TYPE_NOT_PTR 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_FENV_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_FORTRAN_FLUSH_ 1 #define PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT 1 #define PETSC_HAVE_FORTRAN_NOUNDERSCORE 1 #define PETSC_HAVE_FORTRAN_TYPE_STAR 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_GETWD 1 #define PETSC_HAVE_INTTYPES_H 1 #define PETSC_HAVE_ISINF 1 #define PETSC_HAVE_ISNAN 1 #define PETSC_HAVE_ISNORMAL 1 #define PETSC_HAVE_LGAMMA 1 #define PETSC_HAVE_LOG2 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_MALLOC_H 1 #define PETSC_HAVE_MEMALIGN 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE_MMAP 1 #define PETSC_HAVE_MPIIO 1 #define PETSC_HAVE_MPI_F90MODULE 1 #define PETSC_HAVE_MPI_FINALIZED 1 #define PETSC_HAVE_MPI_GET_ACCUMULATE 1 #define PETSC_HAVE_MPI_GET_LIBRARY_VERSION 1 #define PETSC_HAVE_MPI_GPU_AWARE 1 #define PETSC_HAVE_MPI_IN_PLACE 1 #define PETSC_HAVE_MPI_NEIGHBORHOOD_COLLECTIVES 1 #define PETSC_HAVE_MPI_NONBLOCKING_COLLECTIVES 1 #define PETSC_HAVE_MPI_ONE_SIDED 1 #define PETSC_HAVE_MPI_PROCESS_SHARED_MEMORY 1 #define PETSC_HAVE_MPI_REDUCE_LOCAL 1 #define PETSC_HAVE_MPI_RGET 1 #define PETSC_HAVE_MPI_WIN_CREATE 1 #define PETSC_HAVE_NANOSLEEP 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_OMPI_MAJOR_VERSION 10 #define PETSC_HAVE_OMPI_MINOR_VERSION 03 #define PETSC_HAVE_OMPI_RELEASE_VERSION 01 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_PTHREAD_H 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_STRUCT_SIGACTION 1 #define PETSC_HAVE_SYSINFO 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_SYS_PROCFS_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_SYS_SYSINFO_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_USLEEP 1 #define PETSC_HAVE_VALGRIND 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_IS_COLORING_MAX USHRT_MAX #define PETSC_IS_COLORING_VALUE_TYPE short #define PETSC_IS_COLORING_VALUE_TYPE_F integer2 #define PETSC_LEVEL1_DCACHE_LINESIZE 32 #define PETSC_MAX_PATH_LEN 4096 #define PETSC_MEMALIGN 16 #define PETSC_MPIU_IS_COLORING_VALUE_TYPE MPI_UNSIGNED_SHORT #define PETSC_SIGNAL_CAST #define PETSC_SIZEOF_ENUM 4 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG 8 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_USE_AVX512_KERNELS 1 #define PETSC_USE_BACKWARD_LOOP 1 #define PETSC_USE_CTABLE 1 #define PETSC_USE_DEBUG 1 #define PETSC_USE_DEBUGGER "gdb" #define PETSC_USE_INFO 1 #define PETSC_USE_LOG 1 #define PETSC_USE_PROC_FOR_SIZE 1 #define PETSC_USE_REAL_DOUBLE 1 #define PETSC_USE_SHARED_LIBRARIES 1 #define PETSC_USE_VISIBILITY_C 1 #define PETSC_USE_VISIBILITY_CXX 1 #define PETSC_USING_F90FREEFORM 1 #define PETSC_VERSION_BRANCH_GIT "master" #define PETSC_VERSION_DATE_GIT "2020-12-10 22:07:25 +0000" #define PETSC_VERSION_GIT "v3.14.2-269-g6713eda717" #define PETSC__BSD_SOURCE 1 #define PETSC__DEFAULT_SOURCE 1 #define PETSC__GNU_SOURCE 1 #endif **** C specific Configure header /var/tmp/petsc-2v0k4k61/conffix.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #if defined(__cplusplus) extern "C" { } #else #endif #endif ******************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): ------------------------------------------------------------------------------- Bad compiler flag: -I/usr/tce/packages/spectrum-mpi/ibm/spectrum-mpi-rolling-release/include ******************************************************************************* File "/g/g15/faibuss/petsc/config/configure.py", line 456, in petsc_configure framework.configure(out = sys.stdout) File "/g/g15/faibuss/petsc/config/BuildSystem/config/framework.py", line 1273, in configure self.processChildren() File "/g/g15/faibuss/petsc/config/BuildSystem/config/framework.py", line 1261, in processChildren self.serialEvaluation(self.childGraph) File "/g/g15/faibuss/petsc/config/BuildSystem/config/framework.py", line 1236, in serialEvaluation child.configure() File "/g/g15/faibuss/petsc/config/BuildSystem/config/package.py", line 1141, in configure self.executeTest(self.configureLibrary) File "/g/g15/faibuss/petsc/config/BuildSystem/config/base.py", line 138, in executeTest ret = test(*args,**kargs) File "/g/g15/faibuss/petsc/config/BuildSystem/config/packages/MPI.py", line 720, in configureLibrary self.executeTest(self.findMPIInc) File "/g/g15/faibuss/petsc/config/BuildSystem/config/base.py", line 138, in executeTest ret = test(*args,**kargs) File "/g/g15/faibuss/petsc/config/BuildSystem/config/packages/MPI.py", line 655, in findMPIInc self.setCompilers.addCompilerFlag(arg) File "/g/g15/faibuss/petsc/config/BuildSystem/config/setCompilers.py", line 1235, in addCompilerFlag raise RuntimeError('Bad compiler flag: '+flag) ================================================================================ Finishing configure run at Sun, 13 Dec 2020 11:12:01 -0800 ================================================================================