This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by sowing configure 1.1.26, which was generated by GNU Autoconf 2.69. Invocation command line was $ ./configure --prefix=/share/apps/petsc-master/sowing-test ## --------- ## ## Platform. ## ## --------- ## hostname = mef90.schur.math.lsu.edu uname -m = x86_64 uname -r = 3.10.0-1127.18.2.el7.x86_64 uname -s = Linux uname -v = #1 SMP Sun Jul 26 15:27:06 UTC 2020 /usr/bin/uname -p = x86_64 /bin/uname -X = unknown /bin/arch = x86_64 /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /share/apps/petsc-master/RHEL7-intel2020.2-impi-g/bin PATH: /share/apps/intel-2020.2/compilers_and_libraries/linux/mpi/intel64/bin PATH: /share/apps/intel-2020.2/compilers_and_libraries/linux/mpi/intel64/libfabric/bin PATH: /share/apps/intel-2020.2/compilers_and_libraries/linux/bin/intel64 PATH: /share/apps/gmake-4.3/bin PATH: /home/blaise/bin PATH: /usr/lib64/qt-3.3/bin PATH: /usr/local/bin PATH: /usr/bin PATH: /usr/local/sbin PATH: /usr/sbin ## ----------- ## ## Core tests. ## ## ----------- ## configure:2870: checking for ranlib configure:2886: found /usr/bin/ranlib configure:2897: result: ranlib configure:2962: checking for a BSD-compatible install configure:3030: result: /usr/bin/install -c configure:3062: checking whether install works configure:3070: result: yes configure:3085: checking for ar configure:3101: found /usr/bin/ar configure:3112: result: ar configure:3171: checking for gcc configure:3187: found /usr/bin/gcc configure:3198: result: gcc configure:3427: checking for C compiler version configure:3436: gcc --version >&5 gcc (GCC) 4.8.5 20150623 (Red Hat 4.8.5-44) Copyright (C) 2015 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:3447: $? = 0 configure:3436: gcc -v >&5 Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/4.8.5/lto-wrapper Target: x86_64-redhat-linux Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-linker-hash-style=gnu --enable-languages=c,c++,objc,obj-c++,java,fortran,ada,go,lto --enable-plugin --enable-initfini-array --disable-libgcj --with-isl=/builddir/build/BUILD/gcc-4.8.5-20150702/obj-x86_64-redhat-linux/isl-install --with-cloog=/builddir/build/BUILD/gcc-4.8.5-20150702/obj-x86_64-redhat-linux/cloog-install --enable-gnu-indirect-function --with-tune=generic --with-arch_32=x86-64 --build=x86_64-redhat-linux Thread model: posix gcc version 4.8.5 20150623 (Red Hat 4.8.5-44) (GCC) configure:3447: $? = 0 configure:3436: gcc -V >&5 gcc: error: unrecognized command line option '-V' gcc: fatal error: no input files compilation terminated. configure:3447: $? = 4 configure:3436: gcc -qversion >&5 gcc: error: unrecognized command line option '-qversion' gcc: fatal error: no input files compilation terminated. configure:3447: $? = 4 configure:3467: checking whether the C compiler works configure:3489: gcc conftest.c >&5 configure:3493: $? = 0 configure:3541: result: yes configure:3544: checking for C compiler default output file name configure:3546: result: a.out configure:3552: checking for suffix of executables configure:3559: gcc -o conftest conftest.c >&5 configure:3563: $? = 0 configure:3585: result: configure:3607: checking whether we are cross compiling configure:3615: gcc -o conftest conftest.c >&5 configure:3619: $? = 0 configure:3626: ./conftest configure:3630: $? = 0 configure:3645: result: no configure:3650: checking for suffix of object files configure:3672: gcc -c conftest.c >&5 configure:3676: $? = 0 configure:3697: result: o configure:3701: checking whether we are using the GNU C compiler configure:3720: gcc -c conftest.c >&5 configure:3720: $? = 0 configure:3729: result: yes configure:3738: checking whether gcc accepts -g configure:3758: gcc -c -g conftest.c >&5 configure:3758: $? = 0 configure:3799: result: yes configure:3816: checking for gcc option to accept ISO C89 configure:3879: gcc -c -g -O2 conftest.c >&5 configure:3879: $? = 0 configure:3892: result: none needed configure:3917: checking for c++ configure:3933: found /usr/bin/c++ configure:3944: result: c++ configure:4068: checking for C++ compiler version configure:4077: c++ --version >&5 c++ (GCC) 4.8.5 20150623 (Red Hat 4.8.5-44) Copyright (C) 2015 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:4088: $? = 0 configure:4077: c++ -v >&5 Using built-in specs. COLLECT_GCC=c++ COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/4.8.5/lto-wrapper Target: x86_64-redhat-linux Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-linker-hash-style=gnu --enable-languages=c,c++,objc,obj-c++,java,fortran,ada,go,lto --enable-plugin --enable-initfini-array --disable-libgcj --with-isl=/builddir/build/BUILD/gcc-4.8.5-20150702/obj-x86_64-redhat-linux/isl-install --with-cloog=/builddir/build/BUILD/gcc-4.8.5-20150702/obj-x86_64-redhat-linux/cloog-install --enable-gnu-indirect-function --with-tune=generic --with-arch_32=x86-64 --build=x86_64-redhat-linux Thread model: posix gcc version 4.8.5 20150623 (Red Hat 4.8.5-44) (GCC) configure:4088: $? = 0 configure:4077: c++ -V >&5 c++: error: unrecognized command line option '-V' c++: fatal error: no input files compilation terminated. configure:4088: $? = 4 configure:4077: c++ -qversion >&5 c++: error: unrecognized command line option '-qversion' c++: fatal error: no input files compilation terminated. configure:4088: $? = 4 configure:4092: checking whether we are using the GNU C++ compiler configure:4111: c++ -c conftest.cpp >&5 configure:4111: $? = 0 configure:4120: result: yes configure:4129: checking whether c++ accepts -g configure:4149: c++ -c -g conftest.cpp >&5 configure:4149: $? = 0 configure:4190: result: yes configure:5787: checking for virtual path format configure:5830: result: VPATH configure:5851: checking for latex configure:5869: found /usr/local/bin/latex configure:5881: result: /usr/local/bin/latex configure:5891: checking for gs configure:5909: found /usr/bin/gs configure:5921: result: /usr/bin/gs configure:5952: checking for pnmcrop configure:5985: result: no configure:5992: checking for pbmtoxbm configure:6025: result: no configure:6032: checking for ppmtogif configure:6065: result: no configure:6072: checking for pnmquant configure:6105: result: no configure:6112: checking for perl configure:6130: found /usr/bin/perl configure:6142: result: /usr/bin/perl configure:6157: checking how to run the C preprocessor configure:6188: gcc -E conftest.c In file included from conftest.c:11:0: /share/apps/intel-2020.2/compilers_and_libraries/linux/include/limits.h:37:54: error: missing binary operator before token "(" defined(__has_include_next) && __has_include_next() ^ configure:6188: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "sowing" | #define PACKAGE_TARNAME "sowing-1.1.26" | #define PACKAGE_VERSION "1.1.26" | #define PACKAGE_STRING "sowing 1.1.26" | #define PACKAGE_BUGREPORT "wgropp@illinois.edu" | #define PACKAGE_URL "" | #define INCLUDED_SOWINGCONF 1 | /* end confdefs.h. */ | #ifdef __STDC__ | # include | #else | # include | #endif | Syntax error configure:6188: gcc -E conftest.c In file included from conftest.c:11:0: /share/apps/intel-2020.2/compilers_and_libraries/linux/include/limits.h:37:54: error: missing binary operator before token "(" defined(__has_include_next) && __has_include_next() ^ configure:6188: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "sowing" | #define PACKAGE_TARNAME "sowing-1.1.26" | #define PACKAGE_VERSION "1.1.26" | #define PACKAGE_STRING "sowing 1.1.26" | #define PACKAGE_BUGREPORT "wgropp@illinois.edu" | #define PACKAGE_URL "" | #define INCLUDED_SOWINGCONF 1 | /* end confdefs.h. */ | #ifdef __STDC__ | # include | #else | # include | #endif | Syntax error configure:6188: gcc -E -traditional-cpp conftest.c In file included from /usr/include/features.h:376:0, from /usr/include/assert.h:37, from conftest.c:14: /usr/include/sys/cdefs.h:31:3: error: #error "You need a ISO C conforming compiler to use the glibc headers" # error "You need a ISO C conforming compiler to use the glibc headers" ^ configure:6188: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "sowing" | #define PACKAGE_TARNAME "sowing-1.1.26" | #define PACKAGE_VERSION "1.1.26" | #define PACKAGE_STRING "sowing 1.1.26" | #define PACKAGE_BUGREPORT "wgropp@illinois.edu" | #define PACKAGE_URL "" | #define INCLUDED_SOWINGCONF 1 | /* end confdefs.h. */ | #ifdef __STDC__ | # include | #else | # include | #endif | Syntax error configure:6188: gcc -E -traditional-cpp conftest.c In file included from /usr/include/features.h:376:0, from /usr/include/assert.h:37, from conftest.c:14: /usr/include/sys/cdefs.h:31:3: error: #error "You need a ISO C conforming compiler to use the glibc headers" # error "You need a ISO C conforming compiler to use the glibc headers" ^ configure:6188: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "sowing" | #define PACKAGE_TARNAME "sowing-1.1.26" | #define PACKAGE_VERSION "1.1.26" | #define PACKAGE_STRING "sowing 1.1.26" | #define PACKAGE_BUGREPORT "wgropp@illinois.edu" | #define PACKAGE_URL "" | #define INCLUDED_SOWINGCONF 1 | /* end confdefs.h. */ | #ifdef __STDC__ | # include | #else | # include | #endif | Syntax error configure:6188: /lib/cpp conftest.c In file included from conftest.c:11:0: /share/apps/intel-2020.2/compilers_and_libraries/linux/include/limits.h:37:54: error: missing binary operator before token "(" defined(__has_include_next) && __has_include_next() ^ configure:6188: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "sowing" | #define PACKAGE_TARNAME "sowing-1.1.26" | #define PACKAGE_VERSION "1.1.26" | #define PACKAGE_STRING "sowing 1.1.26" | #define PACKAGE_BUGREPORT "wgropp@illinois.edu" | #define PACKAGE_URL "" | #define INCLUDED_SOWINGCONF 1 | /* end confdefs.h. */ | #ifdef __STDC__ | # include | #else | # include | #endif | Syntax error configure:6188: /lib/cpp conftest.c In file included from conftest.c:11:0: /share/apps/intel-2020.2/compilers_and_libraries/linux/include/limits.h:37:54: error: missing binary operator before token "(" defined(__has_include_next) && __has_include_next() ^ configure:6188: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "sowing" | #define PACKAGE_TARNAME "sowing-1.1.26" | #define PACKAGE_VERSION "1.1.26" | #define PACKAGE_STRING "sowing 1.1.26" | #define PACKAGE_BUGREPORT "wgropp@illinois.edu" | #define PACKAGE_URL "" | #define INCLUDED_SOWINGCONF 1 | /* end confdefs.h. */ | #ifdef __STDC__ | # include | #else | # include | #endif | Syntax error configure:6227: result: /lib/cpp configure:6247: /lib/cpp conftest.c In file included from conftest.c:11:0: /share/apps/intel-2020.2/compilers_and_libraries/linux/include/limits.h:37:54: error: missing binary operator before token "(" defined(__has_include_next) && __has_include_next() ^ configure:6247: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "sowing" | #define PACKAGE_TARNAME "sowing-1.1.26" | #define PACKAGE_VERSION "1.1.26" | #define PACKAGE_STRING "sowing 1.1.26" | #define PACKAGE_BUGREPORT "wgropp@illinois.edu" | #define PACKAGE_URL "" | #define INCLUDED_SOWINGCONF 1 | /* end confdefs.h. */ | #ifdef __STDC__ | # include | #else | # include | #endif | Syntax error configure:6247: /lib/cpp conftest.c In file included from conftest.c:11:0: /share/apps/intel-2020.2/compilers_and_libraries/linux/include/limits.h:37:54: error: missing binary operator before token "(" defined(__has_include_next) && __has_include_next() ^ configure:6247: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "sowing" | #define PACKAGE_TARNAME "sowing-1.1.26" | #define PACKAGE_VERSION "1.1.26" | #define PACKAGE_STRING "sowing 1.1.26" | #define PACKAGE_BUGREPORT "wgropp@illinois.edu" | #define PACKAGE_URL "" | #define INCLUDED_SOWINGCONF 1 | /* end confdefs.h. */ | #ifdef __STDC__ | # include | #else | # include | #endif | Syntax error configure:6277: error: in `/share/apps/petsc-master/sowing-test/externalpackages/git.sowing': configure:6279: error: C preprocessor "/lib/cpp" fails sanity check See `config.log' for more details ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_c_compiler_gnu=yes ac_cv_cxx_compiler_gnu=yes ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set= ac_cv_env_CFLAGS_value= ac_cv_env_CPPFLAGS_set= ac_cv_env_CPPFLAGS_value= ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set= ac_cv_env_CXXFLAGS_value= ac_cv_env_CXX_set= ac_cv_env_CXX_value= ac_cv_env_LDFLAGS_set= ac_cv_env_LDFLAGS_value= ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_objext=o ac_cv_path_GS=/usr/bin/gs ac_cv_path_LATEX=/usr/local/bin/latex ac_cv_path_PERL=/usr/bin/perl ac_cv_path_install='/usr/bin/install -c' ac_cv_prog_AR=ar ac_cv_prog_CPP=/lib/cpp ac_cv_prog_CXX=c++ ac_cv_prog_ac_ct_CC=gcc ac_cv_prog_ac_ct_RANLIB=ranlib ac_cv_prog_cc_c89= ac_cv_prog_cc_g=yes ac_cv_prog_cxx_g=yes pac_cv_my_conf_dir=/share/apps/petsc-master/sowing-test/externalpackages/git.sowing pac_cv_prog_make_vpath=VPATH ## ----------------- ## ## Output variables. ## ## ----------------- ## AR='ar' CC='gcc' CFLAGS='-g -O2' CONFIGURE_OPTIONS=' '\''--prefix=/share/apps/petsc-master/sowing-test'\''' COPTIONS='' CPP='/lib/cpp' CPPFLAGS='' CXX='c++' CXXCPP='' CXXFLAGS='-g -O2' CXXOPTIONS='' DEFS='' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='' EXEEXT='' FGREP='' GREP='' GS='/usr/bin/gs' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' LATEX='/usr/local/bin/latex' LDFLAGS='' LIBOBJS='' LIBS='' LTLIBOBJS='' MAKE='make' MKDIR='' OBJEXT='o' PACKAGE_BUGREPORT='wgropp@illinois.edu' PACKAGE_MAJOR_VERSION='1' PACKAGE_MINOR_VERSION='1' PACKAGE_NAME='sowing' PACKAGE_STRING='sowing 1.1.26' PACKAGE_SUBMINOR_VERSION='26' PACKAGE_TARNAME='sowing-1.1.26' PACKAGE_URL='' PACKAGE_VERSION='1.1.26' PATH_SEPARATOR=':' PBMTOXBM='' PERL='/usr/bin/perl' PNMCROP='' PNMQUANT='' PPMTOGIF='' RANLIB='ranlib' SHELL='/bin/sh' VPATH='VPATH=.:${srcdir}' ac_ct_CC='gcc' ac_ct_CXX='' bindir='${exec_prefix}/bin' build_alias='' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix='NONE' expanded_bindir='' expanded_datadir='' expanded_datarootdir='' host_alias='' htmldir='${docdir}' includedir='${prefix}/include' infodir='${datarootdir}/info' libdir='${exec_prefix}/lib' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' mandir='${datarootdir}/man' oldincludedir='/usr/include' optflags='' pdfdir='${docdir}' prefix='/share/apps/petsc-master/sowing-test' program_transform_name='s,x,x,' psdir='${docdir}' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' sysconfdir='${prefix}/etc' target_alias='' wwwdir='${prefix}/www' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define PACKAGE_NAME "sowing" #define PACKAGE_TARNAME "sowing-1.1.26" #define PACKAGE_VERSION "1.1.26" #define PACKAGE_STRING "sowing 1.1.26" #define PACKAGE_BUGREPORT "wgropp@illinois.edu" #define PACKAGE_URL "" #define INCLUDED_SOWINGCONF 1 configure: exit 1