================================================================================ ================================================================================ Starting configure run at Wed, 03 Jun 2020 10:18:56 -0700 Configure Options: --configModules=PETSc.Configure --optionsModule=config.compilerOptions --with-cc=gcc --with-cxx=g++ --with-fc=gfortran --with-cxx-dialect=C++11 --download-mpich --download-scalapack --download-parmetis --download-metis --download-mumps --download-ptscotch --download-chaco --download-fblaslapack --download-hypre --download-superlu_dist --download-hdf5=yes --download-ctetgen --download-exodusii --download-zlib --with-debugging=0 COPTFLAGS=-O3 CXXOPTFLAGS=-O3 FOPTFLAGS=-O3 --download-pnetcdf=https://parallel-netcdf.github.io/Release/pnetcdf-1.12.1.tar.gz --download-netcdf Working directory: /home/dsu/Soft/PETSc/petsc-3.13.2 Machine platform: uname_result(system='Linux', node='andromeda', release='4.15.0-46-generic', version='#49~16.04.1-Ubuntu SMP Tue Feb 12 17:45:24 UTC 2019', machine='x86_64', processor='x86_64') Python version: 3.5.2 (default, Apr 16 2020, 17:47:17) [GCC 5.4.0 20160609] ================================================================================ ================================================================================ TEST configureExternalPackagesDir from config.framework(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/framework.py:911) TESTING: configureExternalPackagesDir from config.framework(config/BuildSystem/config/framework.py:911) ================================================================================ TEST configureDebuggers from config.utilities.debuggers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/utilities/debuggers.py:21) TESTING: configureDebuggers from config.utilities.debuggers(config/BuildSystem/config/utilities/debuggers.py:21) Find a default debugger and determine its arguments Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Checking for program /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/gdb...not found Checking for program /home/dsu/Soft/PETSc/petsc-3.10.5/linux-gnu-opt/bin/gdb...not found Checking for program /usr/local/sbin/gdb...not found Checking for program /usr/local/bin/gdb...not found Checking for program /usr/sbin/gdb...not found Checking for program /usr/bin/gdb...found Defined make macro "GDB" to "/usr/bin/gdb" Defined "USE_DEBUGGER" to ""gdb"" Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Defined make macro "DSYMUTIL" to "true" child config.utilities.debuggers 0.013307 ================================================================================ TEST configureDirectories from PETSc.options.petscdir(/home/dsu/Soft/PETSc/petsc-3.13.2/config/PETSc/options/petscdir.py:23) TESTING: configureDirectories from PETSc.options.petscdir(config/PETSc/options/petscdir.py:23) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 1 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 13 #define PETSC_VERSION_SUBMINOR 2 #define PETSC_VERSION_PATCH 0 #define PETSC_VERSION_DATE "Jun 02, 2020" #define PETSC_VERSION_GIT "v3.13.2" #define PETSC_VERSION_DATE_GIT "2020-06-02 22:44:02 -0500" #define PETSC_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_ PETSC_VERSION_EQ #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ child PETSc.options.petscdir 0.004944 ================================================================================ TEST getDatafilespath from PETSc.options.dataFilesPath(/home/dsu/Soft/PETSc/petsc-3.13.2/config/PETSc/options/dataFilesPath.py:29) TESTING: getDatafilespath from PETSc.options.dataFilesPath(config/PETSc/options/dataFilesPath.py:29) Checks what DATAFILESPATH should be child PETSc.options.dataFilesPath 0.000626 ================================================================================ TEST configureGit from config.sourceControl(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/sourceControl.py:24) TESTING: configureGit from config.sourceControl(config/BuildSystem/config/sourceControl.py:24) Find the Git executable Checking for program /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/git...not found Checking for program /home/dsu/Soft/PETSc/petsc-3.10.5/linux-gnu-opt/bin/git...not found Checking for program /usr/local/sbin/git...not found Checking for program /usr/local/bin/git...not found Checking for program /usr/sbin/git...not found Checking for program /usr/bin/git...found Defined make macro "GIT" to "git" Running Executable WITHOUT threads to time it out Executing: git --version stdout: git version 2.7.4 child config.sourceControl 0.007285 ================================================================================ TEST configureInstallationMethod from PETSc.options.petscclone(/home/dsu/Soft/PETSc/petsc-3.13.2/config/PETSc/options/petscclone.py:20) TESTING: configureInstallationMethod from PETSc.options.petscclone(config/PETSc/options/petscclone.py:20) This is a tarball installation child PETSc.options.petscclone 0.001582 ================================================================================ TEST setNativeArchitecture from PETSc.options.arch(/home/dsu/Soft/PETSc/petsc-3.13.2/config/PETSc/options/arch.py:31) TESTING: setNativeArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:31) ================================================================================ TEST configureArchitecture from PETSc.options.arch(/home/dsu/Soft/PETSc/petsc-3.13.2/config/PETSc/options/arch.py:43) TESTING: configureArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:43) Checks PETSC_ARCH and sets if not set No previous hashfile found Setting hashfile: linux-gnu-opt/lib/petsc/conf/configure-hash Deleting configure hash file: linux-gnu-opt/lib/petsc/conf/configure-hash Unable to delete configure hash file: linux-gnu-opt/lib/petsc/conf/configure-hash child PETSc.options.arch 0.012797 ================================================================================ TEST setInstallDir from PETSc.options.installDir(/home/dsu/Soft/PETSc/petsc-3.13.2/config/PETSc/options/installDir.py:35) TESTING: setInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:35) setup installDir to either prefix or if that is not set to PETSC_DIR/PETSC_ARCH Defined make macro "PREFIXDIR" to "/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt" ================================================================================ TEST saveReconfigure from PETSc.options.installDir(/home/dsu/Soft/PETSc/petsc-3.13.2/config/PETSc/options/installDir.py:80) TESTING: saveReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:80) ================================================================================ TEST cleanConfDir from PETSc.options.installDir(/home/dsu/Soft/PETSc/petsc-3.13.2/config/PETSc/options/installDir.py:73) TESTING: cleanConfDir from PETSc.options.installDir(config/PETSc/options/installDir.py:73) ================================================================================ TEST configureInstallDir from PETSc.options.installDir(/home/dsu/Soft/PETSc/petsc-3.13.2/config/PETSc/options/installDir.py:57) TESTING: configureInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:57) Makes installDir subdirectories if it does not exist for both prefix install location and PETSc work install location Changed persistence directory to /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/petsc/conf ================================================================================ TEST restoreReconfigure from PETSc.options.installDir(/home/dsu/Soft/PETSc/petsc-3.13.2/config/PETSc/options/installDir.py:93) TESTING: restoreReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:93) child PETSc.options.installDir 0.001214 ================================================================================ TEST setExternalPackagesDir from PETSc.options.externalpackagesdir(/home/dsu/Soft/PETSc/petsc-3.13.2/config/PETSc/options/externalpackagesdir.py:15) TESTING: setExternalPackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:15) ================================================================================ TEST cleanExternalpackagesDir from PETSc.options.externalpackagesdir(/home/dsu/Soft/PETSc/petsc-3.13.2/config/PETSc/options/externalpackagesdir.py:22) TESTING: cleanExternalpackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:22) child PETSc.options.externalpackagesdir 0.000300 ================================================================================ TEST configureCLanguage from PETSc.options.languages(/home/dsu/Soft/PETSc/petsc-3.13.2/config/PETSc/options/languages.py:27) TESTING: configureCLanguage from PETSc.options.languages(config/PETSc/options/languages.py:27) Choose whether to compile the PETSc library using a C or C++ compiler C language is C Defined "CLANGUAGE_C" to "1" Defined make macro "CLANGUAGE" to "C" child PETSc.options.languages 0.000536 ================================================================================ TEST printEnvVariables from config.setCompilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/setCompilers.py:1725) TESTING: printEnvVariables from config.setCompilers(config/BuildSystem/config/setCompilers.py:1725) **** printenv **** DBUS_SESSION_BUS_ADDRESS=unix:abstract=/tmp/dbus-20rbE1TPsi,guid=98f816bfd25e41050e2226e85ed67fef SHELL=/bin/bash XDG_RUNTIME_DIR=/run/user/1001 SESSION_MANAGER=local/andromeda:@/tmp/.ICE-unix/60355,unix/andromeda:/tmp/.ICE-unix/60355 LESSOPEN=| /usr/bin/lesspipe %s LANGUAGE=en_CA:en USER=dsu SSH_CONNECTION=216.232.220.213 50127 137.82.22.143 22 QT_GRAPHICSSYSTEM=native STARTUP=/usr/bin/im-launch /usr/bin/env LD_LIBRARY_PATH= mate-session GTK_MODULES=gail:atk-bridge:gail:atk-bridge COLORTERM=mate-terminal MATE_DESKTOP_SESSION_ID=this-is-deprecated TERM=xterm GTK2_MODULES=overlay-scrollbar PETSC_DIR=/home/dsu/Soft/PETSc/petsc-3.13.2 XSESSION_EXEC=mate-session SHLVL=4 _=./configure XDG_DATA_DIRS=/usr/local/share:/usr/share:/var/lib/snapd/desktop:/var/lib/snapd/desktop LESSCLOSE=/usr/bin/lesspipe %s %s PWD=/home/dsu/Soft/PETSc/petsc-3.13.2 PATH=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin:/home/dsu/Soft/PETSc/petsc-3.10.5/linux-gnu-opt/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/home/dsu/Soft/Paraview/ParaView-5.5.0/bin:/home/dsu/Soft/VisIt/visit2_13_0.linux-x86_64/bin:/home/dsu/Soft/Intel/parallel_studio_2019/bin:/home/dsu/Soft/Paraview/ParaView-5.5.0/bin:/home/dsu/Soft/VisIt/visit2_13_0.linux-x86_64/bin:/home/dsu/Soft/Intel/parallel_studio_2019/bin HOME=/home/dsu WINDOWID=37767173 LIS_DIR=/home/dsu/Soft/lis/lis-2.0.11 LIS_ARCH=lis-openmp LS_COLORS=rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=00:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=00;36:*.au=00;36:*.flac=00;36:*.m4a=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.oga=00;36:*.opus=00;36:*.spx=00;36:*.xspf=00;36: QT_LINUX_ACCESSIBILITY_ALWAYS_ON=1 XDG_CURRENT_DESKTOP=MATE X2GO_SESSION=dsu-50-1591115755_stDMATE_dp32 XAUTHORITY=/home/dsu/.Xauthority MAIL=/var/mail/dsu QT_ACCESSIBILITY=1 SSH_CLIENT=216.232.220.213 50127 22 SSH_AUTH_SOCK=/run/user/1001/keyring/ssh LANG=en_US.UTF-8 DISPLAY=:50 LD_LIBRARY_PATH=:/home/dsu/Soft/Intel/parallel_studio_2019/lib/intel64:/home/dsu/Soft/Intel/parallel_studio_2019/lib/intel64 PETSC_ARCH=linux-gnu-opt PULSE_CLIENTCONFIG=/home/dsu/.x2go/C-dsu-50-1591115755_stDMATE_dp32/.pulse-client.conf GTK_OVERLAY_SCROLLING=0 LOGNAME=dsu X2GO_AGENT_PID=60144 VTE_VERSION=4205 XDG_SESSION_ID=11979 QT_QPA_PLATFORMTHEME=appmenu-qt5 OLDPWD=/home/dsu/Soft/PETSc ================================================================================ TEST resetEnvCompilers from config.setCompilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/setCompilers.py:1732) TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1732) ================================================================================ TEST checkEnvCompilers from config.setCompilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/setCompilers.py:1762) TESTING: checkEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1762) ================================================================================ TEST checkMPICompilerOverride from config.setCompilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/setCompilers.py:1695) TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:1695) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ================================================================================ TEST requireMpiLdPath from config.setCompilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/setCompilers.py:1716) TESTING: requireMpiLdPath from config.setCompilers(config/BuildSystem/config/setCompilers.py:1716) OpenMPI wrappers require LD_LIBRARY_PATH set ================================================================================ TEST checkInitialFlags from config.setCompilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/setCompilers.py:460) TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:460) Initialize the compiler and linker flags Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Initialized CPPFLAGS to Initialized FPPFLAGS to Initialized CUDAPPFLAGS to -Wno-deprecated-gpu-targets Initialized CXXPPFLAGS to Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ================================================================================ TEST checkCCompiler from config.setCompilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/setCompilers.py:635) TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:635) Locate a functional C compiler Checking for program /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/gcc...not found Checking for program /home/dsu/Soft/PETSc/petsc-3.10.5/linux-gnu-opt/bin/gcc...not found Checking for program /usr/local/sbin/gcc...not found Checking for program /usr/local/bin/gcc...not found Checking for program /usr/sbin/gcc...not found Checking for program /usr/bin/gcc...found Defined make macro "CC" to "gcc" All intermediate test results are stored in /tmp/petsc-oluu3nld All intermediate test results are stored in /tmp/petsc-oluu3nld/config.setCompilers Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.setCompilers/conftest /tmp/petsc-oluu3nld/config.setCompilers/conftest.o Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.setCompilers/conftest /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.setCompilers/conftest /tmp/petsc-oluu3nld/config.setCompilers/conftest.o Testing executable /tmp/petsc-oluu3nld/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-oluu3nld/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-oluu3nld/config.setCompilers/conftest Running Executable WITHOUT threads to time it out Executing: gcc --version stdout: gcc (Ubuntu 5.4.0-6ubuntu1~16.04.12) 5.4.0 20160609 Copyright (C) 2015 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. ================================================================================ TEST checkCPreprocessor from config.setCompilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/setCompilers.py:674) TESTING: checkCPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:674) Locate a functional C preprocessor Checking for program /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/gcc...not found Checking for program /home/dsu/Soft/PETSc/petsc-3.10.5/linux-gnu-opt/bin/gcc...not found Checking for program /usr/local/sbin/gcc...not found Checking for program /usr/local/bin/gcc...not found Checking for program /usr/sbin/gcc...not found Checking for program /usr/bin/gcc...found Defined make macro "CPP" to "gcc -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: ================================================================================ TEST checkCUDACompiler from config.setCompilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/setCompilers.py:710) TESTING: checkCUDACompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:710) Locate a functional CUDA compiler Checking for program /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/nvcc...not found Checking for program /home/dsu/Soft/PETSc/petsc-3.10.5/linux-gnu-opt/bin/nvcc...not found Checking for program /usr/local/sbin/nvcc...not found Checking for program /usr/local/bin/nvcc...not found Checking for program /usr/sbin/nvcc...not found Checking for program /usr/bin/nvcc...not found Checking for program /sbin/nvcc...not found Checking for program /bin/nvcc...not found Checking for program /usr/games/nvcc...not found Checking for program /usr/local/games/nvcc...not found Checking for program /snap/bin/nvcc...not found Checking for program /home/dsu/Soft/Paraview/ParaView-5.5.0/bin/nvcc...not found Checking for program /home/dsu/Soft/VisIt/visit2_13_0.linux-x86_64/bin/nvcc...not found Checking for program /home/dsu/Soft/Intel/parallel_studio_2019/bin/nvcc...not found Checking for program /home/dsu/Soft/Paraview/ParaView-5.5.0/bin/nvcc...not found Checking for program /home/dsu/Soft/VisIt/visit2_13_0.linux-x86_64/bin/nvcc...not found Checking for program /home/dsu/Soft/Intel/parallel_studio_2019/bin/nvcc...not found Checking for program /home/dsu/Soft/PETSc/petsc-3.13.2/lib/petsc/bin/win32fe/nvcc...not found Unable to find programs ['nvcc'] providing listing of each search directory to help debug Path provided in Python program Path provided by default path [] ['mpichversion', 'h5unjam', 'h5perf', 'h5dump', 'mpic++', 'h5copy', 'mpiexec', 'h5import', 'mpirun', 'h5debug', 'gif2h5', 'h5repart', 'h5ls', 'hydra_nameserver', 'mpicxx', 'h5jam', 'ph5diff', 'h5redeploy', 'mpif90', 'h5mkgrp', 'h5pcc', 'h5perf_serial', 'h52gif', 'h5repack', 'mpivars', 'mpifort', 'mpif77', 'parkill', 'h5diff', 'mpiexec.hydra', 'hydra_persist', 'h5pfc', 'h5stat', 'hydra_pmi_proxy', 'mpicc'] [] ['mcc', 'cmpfillin', 'cgal_make_macosx_app', 'cgal_create_CMakeLists', 'ndmetis', 'gpmetis', 'deploytool', 'matlab', 'cgal_create_cmake_script', 'mbuild', 'm2gmetis', 'mex', 'mpmetis', 'graphchk'] ['grpconv', 'rpc.mountd', 'x2gocleansessions', 'su-to-root', 'cupsfilter', 'lpadmin', 'safe_finger', 'grpunconv', 'deluser', 'iconvconfig', 'update-passwd', 'rsyslogd', 'grub-mkconfig', 'tor-instance-create', 'dmidecode', 'dnsmasq', 'install-sgmlcatalog', 'dkms', 'NetworkManager', 'rtcwake', 'rpc.svcgssd', 'install-menu', 'update-icon-caches', 'nfsidmap', 'hddtemp', 'pppoeconf', 'nfnl_osf', 'update-alternatives', 'fdformat', 'laptop-detect', 'popcon-largest-unused', 'dpkg-preconfigure', 'logrotate', 'groupmod', 'invoke-rc.d', 'update-pciids', 'update-default-aspell', 'filefrag', 'create-cracklib-dict', 'kerneloops', 'cupsaccept', 'setvesablank', 'pwconv', 'zic', 'newusers', 'dpkg-reconfigure', 'ownership', 'pam_timestamp_check', 'dpkg-divert', 'useradd', 'popularity-contest', 'xfce4-kiosk-query', 'tcpdump', 'blkmapd', 'cupsctl', 'pppdump', 'pm-suspend-hybrid', 'sensors-detect', 'update-default-wordlist', 'nfsstat', 'saned', 'readprofile', 'cppw', 'update-java-alternatives', 'pppd', 'update-grub-gfxpayload', 'ModemManager', 'pam-auth-update', 'update-dictcommon-hunspell', 'cupsaddsmb', 'e4defrag', 'update-rc.d', 'update-info-dir', 'acpid', 'chpasswd', 'arp', 'usb_modeswitch', 'update-inetd', 'paperconfig', 'isadump', 'vigr', 'lpc', 'thermald', 'delgroup', 'vbetool', 'remove-default-ispell', 'tcpdchk', 'cpgr', 'select-default-ispell', 'rpcdebug', 'tarcat', 'getweb', 'usb_modeswitch_dispatcher', 'pwck', 'pm-hibernate', 'remove-shell', 'update-fonts-alias', 'service', 'alsa-info.sh', 'gss_clnt_send_err', 'rpc.idmapd', 'remove-default-wordlist', 'ippusbxd', 'cracklib-check', 'cracklib-format', 'tor', 'cups-genppdupdate', 'grub-probe', 'guest-account', 'irqbalance', 'avahi-daemon', 'cron', 'sshd', 'unity-greeter', 'rmt-dump', 'update-usbids', 'pwunconv', 'gss_destroy_creds', 'nrpe', 'addgnupghome', 'pm-powersave', 'apparmor_status', 'chat', 'nfsdcltrack', 'install-docs', 'update-gsfontmap', 'groupadd', 'cracklib-unpacker', 'visudo', 'update-grub2', 'exportfs', 'mklost+found', 'ip6tables-apply', 'add-shell', 'update-binfmts', 'rmt', 'locale-gen', 'select-default-wordlist', 'pptpsetup', 'update-default-ispell', 'grpck', 'rmt-tar', 'x2goshowblocks', 'nfsiostat', 'mkinitramfs', 'lpinfo', 'tcpd', 'ispell-autobuildhash', 'update-cracklib', 'gnome-menus-blacklist', 'x2golistsessions_root', 'update-ca-certificates', 'ufw', 'cupsd', 'aa-exec', 'cupsenable', 'lpmove', 'bluetoothd', 'aptd', 'aspell-autobuildhash', 'update-mime', 'start-statd', 'gconf-schemas', 'reject', 'grub-bios-setup', 'nologin', 'make-ssl-cert', 'update-grub', 'grub-macbless', 'usermod', 'ldattach', 'addgroup', 'alsactl', 'rpc.nfsd', 'pam_getenv', 'update-icon-caches.gtk2', 'uuidd', 'upgrade-from-grub-legacy', 'rtkitctl', 'mate-power-backlight-helper', 'update-dictcommon-aspell', 'vcstime', 'pppstats', 'applygnupgdefaults', 'pptp', 'update-xmlcatalog', 'aa-remove-unknown', 'grub-install', 'rpcinfo', 'vpddecode', 'validlocale', 'gparted', 'iucode_tool', 'adduser', 'tcpdmatch', 'accept', 'try-from', 'usbmuxd', 'grub-mkdevicemap', 'isaset', 'iio-sensor-proxy', 'tunelp', 'arpd', 'aa-status', 'rpc.gssd', 'mate-display-properties-install-systemwide', 'update-locale', 'and', 'dpkg-statoverride', 'cupsreject', 'tzconfig', 'gpartedbin', 'update-initramfs', 'update-mate-menu-x2go', 'grub-set-default', 'chgpasswd', 'update-fonts-dir', 'update-catalog', 'iptables-apply', 'anacron', 'toshsat1800-irdasetup', 'realm', 'update-fonts-scale', 'x2godbadmin', 'accessdb', 'vipw', 'cups-browsed', 'pppoe-discovery', 'userdel', 'e2freefrag', 'rfkill', 'grub-reboot', 'cracklib-packer', 'lightdm-session', 'pm-suspend', 'pppconfig', 'mountstats', 'genl', 'lightdm', 'chroot', 'cupsdisable', 'biosdecode', 'iucode-tool', 'avahi-autoipd', 'groupdel'] ['rcp', 'gem2.3', 'mate-session-inhibit', 'asan_symbolize-3.9', 'llvm-mc-3.8', 'foo2xqx', 'x2goruncommand', 'flipdiff', 'cinnamon-session-cinnamon2d', 'elfedit', 'c_rehash', 'monitor-sensor', 'host', 'pon', 'dbus-monitor', 'qdoc', 'hp-doctor', 'mclasserase', 'mkfontdir', 'dh_installmodules', 'x86_64-linux-gnu-ld', 'pbmtext', 'check-language-support', 'wall', 'flock', 'foo2hbpl2-wrapper', 'unzipsfx', 'qmlplugindump', 'etags', 'ld.bfd', 'sha384sum', 'rtstat', 'pilfile', 'arm2hpdl', 'llvm-dis-3.9', 'telnet.netkit', 'mpirun.openmpi', 'mlocate', 'syslinux-legacy', 'dh_suidregister', 'llvm-extract', 'llvm-nm', '7z', 'su-to-root', 'llvm-mc-3.9', 'scanimage', 'vi', 'pdfunite', 'ngettext', 'pnmpsnr', 'hp-scan', 'xfconf-query', 'updatedb.mlocate', 'pdftops', 'llvm-symbolizer-3.9', 'lowriter', 'mdeltree', 'lsb_release', 'hp-info', 'grub-mkrescue', 'busctl', 'foo2zjs-wrapper', 'nm-connection-editor', 'orte-dvm', 'setleds', 'x86_64-linux-gnu-readelf', 'last', 'pbmclean', 'gawk', 'xdg-open', 'ubuntu-support-status', 'ranlib', 'ruby', 'cpp-5', 'mdir', 'pdfimages', 'fitstopnm', 'icontopbm', 'dh_auto_test', 'po2debconf', 'intel_display_crc', 'gucharmap', 'gnome-calculator', 'activity-log-manager', 'compare', 'pnmtoxwd', 'mdel', 'min12xxw', 'system-config-printer-applet', 'routel', 'gfortran', 'cinnamon-session', 'pkcheck', 'w.procps', 'msd-locate-pointer', 'ppmflash', 'pbmtonokia', 'word-list-compress', 'qmlprofiler', 'mmd', 'brushtopbm', 'msgunfmt', 'gpg-zip', 'intel_panel_fitter', 'cinnamon-extension-tool', 'cups-calibrate', 'pcxtoppm', 'lsdiff', 'uic3', 'deja-dup', 'amuFormat.sh', 'ppmchange', 'gnome-terminal.wrapper', 'qmleasing', 'java', 'obj2yaml', 'pbmtoppa', 'tracepath6', 'dgscat-int32', 'whoopsie-preferences', 'rawtoppm', 'splitfont', 'hwloc-gather-topology', 'nmtui', 'showrgb', 'gkbd-keyboard-display', 'unexpand', 'caja-connect-server', 'emacs24-x', 'llvm-mc', 'apport-unpack', 'view', 'gsdj500', 'ompi-top', 'ppmtoyuvsplit', 'clang-apply-replacements-3.9', 'mate-volume-control-applet', 'grog', 'x86_64-linux-gnu-gcc-ar', 'rpmverify', 'pnmsmooth', 'intel_framebuffer_dump', 'ld.gold', 'mate-appearance-properties', 'llvm-c-test-3.8', 'msgfmt', 'dh_icons', 'msggrep', 'yelp', 'apt-cache', 'llvm-nm-3.9', 'ppmspread', 'llvm-readobj-3.9', 'hcitool', 'llvm-dsymutil-3.9', 'unattended-upgrades', 'dropbox', 'mate-session', 'ppmfade', 'mate-search-tool', 'whereis', 'aplay', 'llc', 'pbmto10x', 'ftp', 'pnmcat', 'pnmtotiff', 'systemd-cat', 'grub-mklayout', 'lnstat', 'pbmtoatk', 'hp-pkservice', 'cinnamon-session-cinnamon', 'pg', 'deja-dup-preferences', 'csplit', 'llvm-dwarfdump', 'users', 'llvm-bcanalyzer-3.9', 'lwp-request', 'write', 'rlogin', 'pdf2dsc', 'intel_lid', 'dbus-run-session', 'gvfs-ls', 'pwgen', 'pgmtopbm', 'udisksctl', 'msgfilter', 'env', 'pstruct', 'gslj', 'glxinfo', 'bluetooth-sendto', 'xedid', 'intel-gen4disasm', 'ppmtopcx', 'mate-about', 'renice', 'rpmspec', 'hp-clean', 'pgmnorm', 'msginit', 'unity-webapps-runner', 'fail2ban-server', 'install-menu', 'f77', 'x2gofm', 'xlsfonts', 'snapctl', 'gsnd', 'xfce4-panel', 'gettext.sh', 'pgmtoppm', 'ppmtotga', 'xedit', 'mpiexec.openmpi', 'x86_64-linux-gnu-ld.bfd', 'rpcgen', 'lzcat', 'wpa_passphrase', 'dh_installppp', 'dpkg-source', 'ppmhist', 'google-chrome', 'llvm-config-3.8', 'pacat', 'mmount', 'verify-uselistorder-3.8', 'x86_64-linux-gnu-cpp', 'gpasswd', 'gst-device-monitor-1.0', 'bmptoppm', 'dgscat', 'obj2yaml-3.9', 'updatedb', 'x86_64-linux-gnu-gcov', 'xditview', 'pbmtopi3', 'printerbanner', 'recountdiff', 'gcc', 'shuf', 'llvm-lib-3.8', 'dh_testroot', 'ppmdist', 'localectl', 'cinnamon-file-dialog', 'from', 'intel_display_poller', 'xfwm4-settings', 'lpr', 'mate-mouse-properties', 'hp-plugin-ubuntu', 'iptables-xml', 'x86_64-linux-gnu-elfedit', 'dh_builddeb', 'eqn', 'resize', 'cinnamon-looking-glass', 'pamoil', 'x86_64-linux-gnu-c++filt', 'opt-3.9', 'update-alternatives', 'gnome-screenshot', 'anytopnm', 'alsabat', 'tap2rpm', 'arecord', 'lzfgrep', 'psfstriptable', 'llvm-size', 'dbus-cleanup-sockets', 'gatttool', 'pbmpscale', 'clhsdb', 'llvm-ranlib', 'llvm-tblgen', 'test', 'svnauthz-validate', 'libwacom-list-local-devices', 'ms_print', 'orbd', 'thunar', 'llvm-cxxdump-3.9', 'pnmpad', 'gtbl', 'llvm-link-3.9', 'ibus-daemon', 'savelog', 'llvm-cov-3.9', 'dpkg-gencontrol', 'cupstestdsc', 'clear_console', 'grub-mkrelpath', 'dehtmldiff', 'mkfontscale', 'c-index-test-3.9', 'nemo-connect-server', 'llc-3.8', 'mate-wm', 'engrampa', 'mate-system-monitor', 'infotocap', 'pbmtog3', 'pamon', 'pnmtojpeg', 'speech-dispatcher', 'lpoptions', 'thunar-volman', 'dgmap', 'xfontsel', 'xconsole', 'yes', 'x2gocmdexitmessage', 'atril-previewer', 'lessfile', 'x2goversion', 'conjure-im6', 'apt-key', 'gnome-system-log-pkexec', 'mate-keyboard-properties', 'nvidia-cuda-mps-server', 'grub-mount', 'bdftruncate', 'intel_gpu_top', 'aplaymidi', 'mtype', 'ssh-import-id-gh', 'x2goumount-session', 'opt-3.8', 'jedit', 'intel_stepping', 'lzgrep', 'addpart', 'flex', 'gs', 'xscreensaver-getimage-video', 'grepdiff', 'xwud', 'xdg-screensaver', 'lupdate', 'mate-font-viewer', 'thunar-volman-settings', 'xdg-desktop-icon', 'gapplication', 'dgscat-int64', 'getent', 'apt-ftparchive', 'xzdiff', 'sane-find-scanner', 'cinnamon-slideshow', 'gcalccmd', 'update-desktop-database', 'apport-bug', 'foo2zjs', 'svn', 'ompi-ps', 'ppmtoilbm', 'ppmquant', 'piconv', 'unshare', 'kerneloops-submit', 'vstp', 'browse', 'rpmkeys', 'foo2hp', 'ubuntu-webapps-update-index', 'mpiexec', 'gvfs-move', 'gist-paste', 'pygettext2.7', 'esc-m', 'whois', 'fakeroot', 'clang-3.9', 'ompi-server', 'setterm', 'linux-version', 'bootctl', 'fc-validate', 'pnmtosgi', 'msgcmp', 'clang-query-3.9', 'x2golistdesktops', 'pasuspender', 'ico', 'nvidia-xconfig', 'resizecons', 'foo2hbpl2', 'debconf-apt-progress', 'pilconvert', 'pnmtotiffcmyk', 'mbadblocks', 'xfsinfo', 'systemd-analyze', 'aspell', 'gnome-keyring', 'sotruss', 'dh_makeshlibs', 'pinentry-x11', 'convert', 'intel_backlight', 'llvm-ar-3.9', 'transset', 'intel_watermark', 'cg_annotate', 'apport-collect', 'wish', 'pluma', 'xflock4', 'gnome-software', 'uuidgen', 'mate-session-properties', 'unity-settings-daemon', 'git-upload-archive', 'xscreensaver-getimage-file', 'g++-5', 't1disasm', 'groups', 'gprof', 'ppmtompeg', 'xfce4-appfinder', 'pic', 'tail', 'pycompile', 'vino-preferences', 'apropos', 'dh_installchangelogs', 'conch', 'ssh-agent', 'lastlog', 'pnmdepth', 'eject', 'libnetcfg', 'lscpu', 'cmpfillin', 'qmlmin', 'sensible-editor', 'hp-align', 'mate-window-properties', 'systemd-stdio-bridge', 'display-im6', 'startxfce4', 'lwp-download', 'irb', 'qmltestrunner', 'qhelpconverter', 'ppmdither', 'scp', 'llvm-extract-3.9', 'llvm-nm-3.8', 'gst-install', 'mkmanifest', 'pilfile.py', 'orca-dm-wrapper', 'pydoc2.7', 'md5sum.textutils', 'hostnamectl', 'prezip', 'rdoc2.3', 'marco-window-demo', 'pnmsplit', 'pdb3.5', 'fonttosfnt', 'smproxy', 'x86_64-linux-gnu-addr2line', 'mpirun', 'atobm', 'ispell-wrapper', 'foo2hiperc', 'git', 'vino-passwd', 'zeitgeist-datahub', 'bioradtopgm', 'dpkg-buildpackage', 'cpan5.22-x86_64-linux-gnu', 'mpartition', 'pvrenderserver', 'prove', 'ppmlabel', 'fix-qdf', 'setfacl', 'initctl2dot', 'erb2.3', 'gpgsplit', 'cs2cs', 'metacity-window-demo', 'nemo-desktop', 'nautilus-autorun-software', 'dgmap-long', 'mate-terminal.wrapper', 'xfce4-mime-settings', 'avahi-publish-service', 'combinediff', 'cinnamon-control-center', 'ppmtomitsu', 'usbhid-dump', 'dpkg-divert', 'ps2pdfwr', 'mkpasswd', 'aconnect', 'nawk', 'debconf-set-selections', 'vtk6python', 'dh_link', 'mmove', 'cinnamon-session-quit', 'foo2xqx-wrapper', 'ppmnorm', 'hp-query', 'kbdinfo', 'clang-include-fixer-3.9', 'top', 'x2gogetapps', 'awk', 'pildriver', 'msd-datetime-mechanism', 'which', 'rfcomm', 'desktop-file-edit', 'dgmap-int64', 'openssl', 'hwloc-ps', 'llvm-ranlib-3.9', 'convert-im6', 'infobrowser', 'Thunar', 'lprm', 'llvm-as-3.9', 'dpkg-checkbuilddeps', 'bccmd', 'grub-kbdcomp', 'mcd', 'dh_installcatalogs', 'orte-clean', 'gtk-launch', 'xkbvleds', 'paste', 'display', 'cg_merge', 'pnmtopalm', 'dgpart', 'man', 'x86_64-pc-linux-gnu-pkg-config', 'djpeg', 'lp', 'bugpoint-3.8', 'xscreensaver-text', 'find-all-symbols-3.9', 'volname', 'leaftoppm', 'gnome-session-quit', 'ctest', 'gpg-connect-agent', 'nemo-autorun-software', 'orage', 'gemtopnm', 'ar', 'grub-glue-efi', 'gtk-builder-tool', 'llvm-ranlib-3.8', 'llvm-dwarfdump-3.9', 'appres', 'rename.ul', 'mkfifo', 'pi1toppm', 'mesg', 'printenv', 'rstart', 'chcon', 'fc-cache', 'c99', 'xfrun4', 'pbmtobbnbg', 'xzmore', 'nslookup', 'x2gosetkeyboard', 'od', 'x86_64', 'splain', 'mate-dictionary', 'xkbcomp', 'trust', 'dh_autotools-dev_updateconfig', 'chardet', 'cheese', 'ppmtoleaf', 'xlsclients', 'pbmupc', 'xzcmp', 'mmcli', 'tr', 'synclient', 'thunar-settings', 'edit', 'a11y-profile-manager-indicator', 'lldb-server-3.9.1-3.9', 'make', 'system-config-printer', 'x2goagent', 'pilprint.py', 'gconf-merge-tree', 'ocat', 'dh_installcron', 'tificc', 'gsbj', 'composite-im6', 'pbmtopgm', 'caja-autorun-software', 'pbmmask', 'ghostscript', 'uz', 'gnome-session-inhibit', 'pnmtosir', 'cpan', 'yuvsplittoppm', 'qtchooser', 'dh_desktop', 'systemd-delta', 'ciptool', 'on_ac_power', 'passwd', 'qmlbundle', 'nroff', 'mshortname', 'fstopgm', 'git-shell', 'gvfs-monitor-file', 'ptar', 'alsamixer', 'install-info', 'svnsync', 'gcc-ar-5', 'glxheads', 'x86_64-linux-gnu-g++', 'cupstestppd', 'xfdesktop', 'acpi_listen', 'ps2ps2', 'psidtopgm', 'msgcat', 'xwdtopnm', 'colrm', 'llvm-tblgen-3.8', 'tput', 'dc', 'xdg-user-dir', 'foo2hiperc-wrapper', 'ppmtoyuv', 'winicontoppm', 'pbmreduce', 'nvidia-smi', 'nsenter', 'sensors', 'namei', 'nmtui-connect', 'slxdecode', 'sum', 'geod', 'x86_64-linux-gnu-gfortran', 'clang++-3.9', 'ipcs', 'x86_64-linux-gnu-gcov-tool', 'pnmtoplainpnm', 'rpmdb', 'gcov', 'svnserve', 'json_pp', 'llvm-lto-3.9', 'opldecode', 'qml', 'pgmedge', 'sbigtopgm', 'skill', 'desktop-file-install', 'pnmtoddif', 'foo2lava', 'pnmcrop', 'poff', 'pdb', 'slogin', 'ubuntu-software', 'ppmdim', 'ibus-setup', 'gst-discoverer-1.0', 'xfce4-notifyd-config', 'apt-get', 'bluetoothctl', 'zip', 'ctags.emacs24', 'gst-launch-1.0', 'chardet3', 'baobab', 'avahi-publish', 'npm', 'fallocate', 'pnmhisteq', 'eyuvtoppm', 'pgmbentley', 'atril-thumbnailer', 'tclsh', 'llvm-pdbdump-3.9', 'base32', 'mate-panel-screenshot', 'viewres', 'fc-match', 'xfwm4', 'ucf', 'stat', 'nvidia-debugdump', 'seq', 'parec', 'lodraw', 'sbkeysync', 'koi8rxterm', 'gvfs-monitor-dir', 'xfd', 'llvm-dwarfdump-3.8', 'remmina', 'ppmforge', 'gsettings-data-convert', 'gst-play-1.0', 'xdg-mime', 'ppmqvga', 'speaker-test', 'add-apt-repository', 'x2goterminate-session', 'sha256sum', 'dh_gencontrol', 'htop', 'x86_64-linux-gnu-gcc-ar-5', 'unity-webapps-qml-launcher', 'gpgv', 'dh_installxmlcatalogs', 'pgmkernel', 'xvminitoppm', 'pdfseparate', 'h2ph', 'dpkg-scansources', 'hp-colorcal', 'orte-server', 'p11-kit', 'xzegrep', 'llvm-dwp-3.8', 'pybuild', 'mate-settings-daemon', 'amidi', 'uxterm', 'cinnamon-screensaver-command', 'llvm-dwp-3.9', 'psicc', 'dpkg-query', 'dgtst-int32', 'xbiff', 'xrotate', 'ps2pdf14', 'llvm-objdump-3.8', 'eom', 'fail2ban-testcases', 'loadkeys', 'dgord-long', 'xdg-email', 'dh_shlibdeps', 'pbmtogo', 'gold', 'tic', 'ppmtoxpm', 'avahi-browse', 'xmlpatterns', 'svnrdump', 'orte-top', 'cpufreq-info', 'gendiff', 'dh_installemacsen', 'comm', 'mdu', 'bison', 'gnome-thumbnail-font', 'systemd-resolve', 'node', 'gpg', 'xsetpointer', 'nxagent', 'notify-send', 'bsd-from', 'hydra_nameserver', 'cd-fix-profile', 'xinit', 'rpm', 'xfce4-session', 'clang-rename-3.9', '2to3-3.5', 'ckeygen', 'gnome-settings-daemon', 'qpdf', 'cjpeg', 'grub-mkpasswd-pbkdf2', 'orte-ps', 'xfce4-popup-directorymenu', 'valgrind-di-server', 'orterun', 'inxi', 'xload', 'session-migration', 'hp-timedate', 'readelf', 'ppmquantall', 'qml1plugindump', 'python', 'gdbtui', 'whatis', 'lpq', 'lsusb', 'podebconf-display-po', 'xrdb', 'tzselect', 'pnminterp-gen', 'x86_64-linux-gnu-gcc-nm-5', 'gpgparsemail', 'l2ping', 'lldb-mi-3.9', 'st4topgm', 'composite', 'apport-cli', 'nodejs', 'qrttoppm', 'opt', 'xfsettingsd', 'compiz', 'linkicc', 'debugedit', 'llvm-size-3.8', 'mattrib', 'animate-im6', 'mpirun.mpich', 'factor', 'llvm-extract-3.8', 'gpg2', 'ppmtoacad', 'assistant', 'pbmtozinc', 'alien', 'routef', 'aseqdump', 'rpm2archive', 'thinkjettopbm', 'rsync', 'debconf-gettextize', 'cpufreq-set', 'pilfont.py', 'pldd', 'file-roller', 'cancel', 'svnauthz', 'xgamma', 'dircolors', 'ipcmk', 'cg_diff', 'servertool', 'rev', 'lsof', 'glxgears', 'grub-mkimage', 'xfce4-volumed', 'gcore', 'py3versions', 'xlsatoms', 'debconf-show', 'grub-render-label', 'llvm-bcanalyzer', 'x2gomountdirs', 'yaml2obj-3.9', 'valgrind', 'pwdx', 'minfo', 'totem-audio-preview', 'xwd', 'parecord', 'ubuntu-advantage', 'qdbusxml2cpp', 'jpegexiforient', 'dh_usrlocal', 'wayland-scanner', 'upower', 'x86_64-linux-gnu-gcov-5', 'gpg-agent', 'python2.7', 'dbiprof', 'signonpluginprocess', 'nl', 'gtk-update-icon-cache', 'debconf-updatepo', 'gresource', 'llvm-cxxdump-3.8', 't1binary', 'ppmtosixel', 'imagetops', 'mksquashfs', 'jpegtran', 'pgmhist', 'link', 'import', 'evince-previewer', 'xinput', 'pnmtorle', 'x86_64-linux-gnu-gfortran-5', 'x-window-manager', 'dbilogstrip', 'grep-changelog.emacs24', 'x86_64-linux-gnu-objdump', 'lshw', 'emacs', 'do-release-upgrade', 'mkzftree', 'debconf', 'jpegtopnm', 'zdump', 'chacl', 'gcov-5', 'hp-logcapture', 'intel_audio_dump', 'lstopo-no-graphics', 'bugpoint-3.9', 'moc', 'svndumpfilter', 'ruby2.3', 'pvbatch', 'ndmetis', 'rstartd', 'sprof', 'cpufreq-aperf', 'mshowfat', 'x86_64-linux-gnu-gcov-tool-5', 'telnet', 'unicode_stop', 'x86_64-linux-gnu-cpp-5', 'm4', 'wrjpgcom', 'identify-im6', 'usb-creator-gtk', 'llvm-pdbdump-3.8', 'git-upload-pack', 'dpkg-trigger', 'cinnamon-launcher', 'start-pulseaudio-x11', 'dh_scrollkeeper', 'gifmaker', 'pulseaudio', 'spd-say', 'setkeycodes', 'pgmnoise', 'mgrtopbm', 'showkey', 'funzip', 'msgattrib', 'vglserver_config', 'ltrace', 'trial', 'ppmtomap', 'gedit', 'update-gconf-defaults', 'clang-cl-3.9', 'linux32', 'nstat', 'faillog', 'unpack200', 'linux-boot-prober', 'unity-webapps-desktop-file', 'gksudo', 'bluetooth-wizard', 'pydoc3', 'pgmtexture', 'nvidia-bug-report.sh', 'gnome-font-viewer', 'nautilus', 'intel_gpu_frequency', 'gipddecode', 'ebrowse.emacs24', 'systemd-path', 'xsetwacom', 'gcc-ranlib-5', 'intel_error_decode', 'sbsign', 'c++filt', 'gcc-nm-5', 'player.py', 'lzmore', 'mate-power-preferences', 'glib-compile-schemas', 'exo-csource', 'gvfs-info', 'online-accounts-preferences', 'base64', 'xz', 'cpp', 'pvdataserver', 'x86_64-linux-gnu-objcopy', 'mkisofs', 'GET', 'ppmntsc', 'yacc', 'fslsfonts', 'qhelpgenerator', 'ppdhtml', 'ssh', 'lomath', 'timeout', 'pbmtomacp', 'precat', 'cmuwmtopbm', 'thunderbird', 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'grub-menulst2cfg', 'identify', 'snap', 'pnmremap', 'gcat', 'mimeopen', 'metacity-message', 'dh_installmime', 'ppmtopgm', 'c89-gcc', 'gvfs-mkdir', 'isovfy', 'xauth', 'lsinitramfs', 'preunzip', 'pamdice', 'webapp-container', 'yaml2obj', 'zeisstopnm', 'invgeod', 'mate-invest-chart', 'msgcomm', 'asciitopgm', 'xfce4-about', 'ipod-read-sysinfo-extended', 'pygettext', 'dgtst-int64', 'pico', 'systemd-cgtop', 'avahi-browse-domains', 'mcat', 'graphchk', 'zenity', 'hd', 'eps2eps', 'pvserver', 'pgmoil', 'pcimodules', 'xlet-settings', 'nmtui-edit', 'sensible-pager', 'pnmtofits', 'pdftotext', 'marco', 'parkill', 'pphs', 'nmtui-hostname', 'less', 'animate', 'tkconch', 'ptargrep', 'dgord-int64', 'faked-tcp', 'intel_aubdump', 'lli-child-target-3.9', 'zipnote', 'createfontdatachunk', 'run-mailcap', 'enchant', 'xterm', 'nm-online', 'partx', 'nmcli', 'setmetamode', 'systemd-run', 'pod2usage', 'rgrep', 'tabs', 'xkbwatch', 'gvfs-open', 'stdbuf', 'paraview', 'dpkg-name', 'caja', 'x86_64-linux-gnu-gcc-nm', 'session-installer', 'foo2slx-wrapper', 'alsaloop', 'nvidia-persistenced', 'ischroot', 'xprop', 'sessreg', 'realpath', 'xfdesktop-settings', 'f2py', 'symcryptrun', 'pdfinfo', 'setlogcons', 'transmission-gtk', 'bmptopnm', 'sudoedit', 'torify', 'pbmtoxbm', 'mpiexec.hydra', 'fail2ban-client', 'reset', 'mate-control-center', 'sudoreplay', 'desktop-file-validate', 'xpci', 'file-rename', 'hp-config_usb_printer', 'nsupdate', 'pbmtoplot', 'x11perfcomp', 'fc-cat', 'rendercheck', 'xkbbell', 'gnome-file-share-properties', 'dh_installinfo', 'xfce4-popup-windowmenu', 'gnome-system-monitor', 'mtools', 'cmp', 'qlalr', 'ntfsdecrypt', 'foo2oak', 'ppmtv', 'ppmcie', 'dh_installmenu', 'lofromtemplate', 'codepage', 'tifftopnm', 'lconvert', 'lspgpot', 'hsdb', 'intel_opregion_decode', 'llvm-rtdyld', 'ssh-add', 'x86_64-linux-gnu-gcc-5', 'mate-keybinding-properties', 'rediff', 'hydra_persist', 'ibus', 't1asm', 'hwloc-annotate', 'ppmtolj', 'pamdeinterlace', 'intel_gpu_time', 'xfhelp4', 'etags.emacs24', 'ps2ascii', 'ncal', 'mate-default-applications-properties', 'deallocvt', 'twistd', 'rmiregistry', 'igawk', 'dh_gconf', 'tee', 'intel_forcewaked', 'hwloc-distrib', 'gsettings-schema-convert', 'bashbug', 'mcomp', 'linguist', 'tracepath', 'oclock', 'dh_installman', 'glib-compile-resources', 'padsp', 'deb-systemd-invoke', 'pi3topbm', 'gdbserver', 'dh_python3', 'sancov-3.9', 'pnmpaste', 'taskset', 'imgtoppm', 'igt_stats', '411toppm', 'bsd-write', 'scp-dbus-service', 'mpaste', 'x-terminal-emulator', 'gpgconf', 'intel-virtual-output', 'rmid', 'evince-thumbnailer', 'llvm-as', 'lz', 'wc', 'ppmcolormask', 'ssh-argv0', 'split', 'dotlockfile', 'install-printerdriver', 'mate-network-properties', 'fixcvsdiff', 'xscreensaver-command', 'globaltime', 'watchgnupg', 'col', 'i386', 'catman', 'shasum', 'dh_installexamples', 'eog', 'sha512sum', 'pnmnoraw', 'dh_perl', 'dh_installxfonts', 'dh_installmanpages', 'xrefresh', 'pyclean', 'debconf-copydb', 'fc-list', 'loffice', 'dh_installifupdown', 'atktopbm', 'cinnamon-desktop-editor', 'chardetect3', 'gnome-language-selector', 'dpkg-gensymbols', 'sgitopnm', 'gcc-ar', 'script', 'xmlpatternsvalidator', 'verify-uselistorder-3.9', 'bluemoon', 'btmgmt', 'lli', 'hwloc-distances', 'update-mime-database.real', 'llvm-dis-3.8', 'free', '2to3', 'wish8.6', 'dconf', 'xzfgrep', 'qdoc3', 'POST', 'pathchk', 'vim.tiny', 'x2gostartagent', 'proj', 'x86_64-linux-gnu-g++-5', 'x86_64-linux-gnu-nm', 'netkit-ftp', 'qmake', 'gnome-open', 'dh_strip', 'c89', 'pinky', 'dbiproxy', 'xrandr-tool', 'pf2afm', 'x2goresume-session', 'pgmslice', 'sputoppm', 'sbverify', 'mate-power-manager', 'pdftohtml', 'rpmquery', 'deb-systemd-helper', 'rhythmbox-client', 'apt-add-repository', 'pamstack', 'nvidia-cuda-mps-control', 'intel_dump_decode', 'python2', 'lli-3.8', 'pnmtorast', 'gdbus', 'ps2txt', 'enhancer', 'ppmshadow', 'qcollectiongenerator', 'strings', 'neqn', 'pkexec', 'cut', 'pnmgamma', 'dh_dkms', 'gtf', 'bitmap', 'hydra_pmi_proxy', 'chage', 'viewer.py', 'ppdpo', 'pydoc3.5', 'locate', 'chrt', 'gcov-tool', 'x2goumount_session', 'spellintian', 'newgrp', 'gnome-power-statistics', 'pstree.x11', 'invproj', 'foo2lava-wrapper', 'sdptool', 'getkeycodes', 'HEAD', 'bugpoint', 'grub-syslinux2cfg', 'atril', 'python3.5m', 'pamstretch', 'gconftool-2', 'ttfread', 'py3compile', 'pastebin', 'xgc', 'zipgrep', 'lispmtopgm', 'rgb3toppm', 'intel_reg_checker', 'ppmtopict', 'gpu-manager', 'lrelease', 'pgmcrater', 'dh_install', 'infocmp', 'scan-view-3.9', 'hbpldecode', 'fail2ban-regex', 'usb_printerid', 'gcc-nm', 'nad2bin', 'ppmtopj', 'qtdiag', 'gcr-viewer', 'x2goumount-session-mate', 'x86_64-linux-gnu-pkg-config', 'unity-control-center', 'mogrify-im6', 'pbmpage', 'ebrowse', 'dh_update_autotools_config', 'dh_auto_install', 'pdfdetach', 'xfce4-keyboard-settings', 'dbus-uuidgen', 'compose', 'ppmtoicr', 'hwloc-calc', 'ex'] ['dosfslabel', 'dumpe2fs', 'ntfsundelete', 'upstart-event-bridge', 'mkfs.bfs', 'iwspy', 'fsfreeze', 'apparmor_parser', 'ip6tables-save', 'findfs', 'mount.ntfs', 'telinit', 'restore', 'apm_available', 'reload', 'start', 'pccardctl', 'getpcaps', 'chcpu', 'stop', 'ntfslabel', 'killall5', 'upstart', 'get-quirk-options', 'udevadm', 'start-stop-daemon', 'key.dns_resolver', 'tune2fs', 'regdbdump', 'rtacct', 'halt', 'fsck.msdos', 'ifup', 'zramctl', 'rdump', 'swapoff', 'mkntfs', 'rtmon', 'installkernel', 'upstart-local-bridge', 'swapon', 'getcap', 'mntctl', 'mii-tool', 'getty', 'setvtrgb', 'fsck.nfs', 'runlevel', 'sfdisk', 'ntfscp', 'iptables-save', 'umount.udisks2', 'lsmod', 'e2fsck', 'mkfs.ntfs', 'on_ac_power', 'mkfs', 'fatlabel', 'e2undo', 'iwconfig', 'pivot_root', 'iptables-restore', 'hwclock', 'unix_chkpwd', 'mount.nfs4', 'sgdisk', 'poweroff', 'fixparts', 'mount.nfs', 'umount.nfs', 'logsave', 'tipc', 'rpc.statd', 'e2label', 'ifdown', 'isosize', 'wpa_action', 'swaplabel', 'reboot', 'partprobe', 'hdparm', 'fstrim', 'wpa_cli', 'pam_tally', 'ntfsresize', 'bridge', 'fsck.vfat', 'brltty-setup', 'mkfs.vfat', 'rmmod', 'pam_extrausers_update', 'insmod', 'ip6tables-restore', 'dump', 'mkswap', 'mount.fuse', 'mkfs.fat', 'lspcmcia', 'ifquery', 'ipmaddr', 'prime-switch', 'mke2fs', 'resolvconf', 'rarp', 'cgdisk', 'tc', 'capsh', 'rrestore', 'iwlist', 'iwevent', 'ntfsclone', 'dhclient-script', 'fsck.ext4', 'mkhomedir_helper', 'alsa', 'modprobe', 'mountall', 'xtables-multi', 'upstart-udev-bridge', 'iptunnel', 'crda', 'brltty', 'fsck.ext3', 'pam_extrausers_chkpwd', 'request-key', 'acpi_available', 'init', 'ldconfig.real', 'blkid', 'sm-notify', 'mkfs.cramfs', 'depmod', 'debugfs', 'restart', 'sulogin', 'upstart-file-bridge', 'gdisk', 'plymouthd', 'cfdisk', 'resize2fs', 'fsck.fat', 'ethtool', 'ip6tables', 'fdisk', 'showmount', 'sysctl', 'iptables', 'shutdown', 'modinfo', 'iw', 'switch_root', 'iwpriv', 'ldconfig', 'route', 'ctrlaltdel', 'upstart-dbus-bridge', 'losetup', 'fsck.ext2', 'fsck', 'mkdosfs', 'blkdiscard', 'fsck.cramfs', 'ureadahead', 'dhclient', 'badblocks', 'kbdrate', 'mkfs.ext3', 'initctl', 'mkfs.minix', 'prime-offload', 'rpcbind', 'osd_login', 'MAKEDEV', 'mkfs.ext4dev', 'create-uvm-dev-node', 'mount.ntfs-3g', 'fsck.ext4dev', 'fstab-decode', 'parted', 'mount.lowntfs-3g', 'iwgetid', 'mkfs.ext4', 'nameif', 'ip', 'wpa_supplicant', 'raw', 'setcap', 'shadowconfig', 'agetty', 'blockdev', 'upstart-socket-bridge', 'plipconfig', 'status', 'unix_update', 'u-d-c-print-pci-ids', 'pam_tally2', 'wipefs', 'fsck.minix', 'mkfs.msdos', 'ifconfig', 'slattach', 'umount.nfs4', 'runuser', 'dosfsck', 'e2image', 'mkfs.ext2'] ['ntfscmp', 'echo', 'tempfile', 'kmod', 'sync', 'sh', 'login', 'fgconsole', 'gunzip', 'mount', 'udevadm', 'sleep', 'gzip', 'lessfile', 'bzmore', 'ping6', 'open', 'bzcmp', 'ntfscluster', 'kbd_mode', 'df', 'fusermount', 'tailf', 'chown', 'mt', 'busybox', 'setfacl', 'ypdomainname', 'openvt', 'whiptail', 'which', 'zmore', 'bzip2recover', 'lsmod', 'setupcon', 'pwd', 'systemd-machine-id-setup', 'gzexe', 'findmnt', 'systemd-notify', 'fgrep', 'ntfsinfo', 'fuser', 'lowntfs-3g', 'loadkeys', 'setfont', 'netcat', 'run-parts', 'sh.distrib', 'efibootmgr', 'ntfsfallocate', 'date', 'zgrep', 'bzgrep', 'ed', 'bzcat', 'chacl', 'nc', 'netstat', 'ntfswipe', 'pidof', 'false', 'dnsdomainname', 'ntfs-3g.probe', 'cp', 'ntfs-3g', 'dash', 'bash', 'ntfs-3g.secaudit', 'keyctl', 'egrep', 'chmod', 'loginctl', 'ntfsmove', 'nano', 'lessecho', 'mountpoint', 'rnano', 'cat', 'systemd', 'hciconfig', 'mt-gnu', 'uname', 'ps', 'stty', 'zegrep', 'bzfgrep', 'ntfs-3g.usermap', 'systemctl', 'rbash', 'plymouth', 'bzegrep', 'more', 'su', 'lesspipe', 'ntfsls', 'rm', 'systemd-escape', 'static-sh', 'mv', 'kill', 'dumpkeys', 'bzless', 'vdir', 'systemd-tty-ask-password-agent', 'zfgrep', 'rmdir', 'tar', 'sed', 'zdiff', 'readlink', 'chgrp', 'touch', 'mkdir', 'ulockmgr_server', 'red', 'ln', 'journalctl', 'lesskey', 'systemd-tmpfiles', 'zcat', 'bunzip2', 'cpio', 'dir', 'networkctl', 'systemd-hwdb', 'nisdomainname', 'bzip2', 'zless', 'mktemp', 'systemd-inhibit', 'zcmp', 'unicode_start', 'systemd-ask-password', 'bzexe', 'hostname', 'grep', 'getfacl', 'ntfscat', 'znew', 'ip', 'less', 'ls', 'dd', 'zforce', 'ping', 'true', 'lsblk', 'ss', 'ntfstruncate', 'umount', 'bzdiff', 'domainname', 'wdctl', 'ntfsfix', 'uncompress', 'mknod', 'nc.openbsd', 'chvt', 'dmesg'] ['espdiff', 'gnome-mines', 'gnome-mahjongg', 'sol', 'gnome-sudoku'] [] Warning accessing /snap/bin gives errors: [Errno 2] No such file or directory: '/snap/bin' Warning accessing /home/dsu/Soft/Paraview/ParaView-5.5.0/bin gives errors: [Errno 2] No such file or directory: '/home/dsu/Soft/Paraview/ParaView-5.5.0/bin' ['mpeg2encode', 'visitprotocol', 'xml2cmake', 'makemili', 'text2polys', 'run_doxygen', 'frontendlauncher', 'xml2window', 'surfcomp', 'Doxyfile', 'xmltest', 'visit0000.session', 'time_annotation', 'visit_plugin', 'xmledit', 'xml2atts', 'curv3dprep', 'visit_transition', 'regen-ajp', 'visit_composite', 'visit', 'xml2plugin', 'xml2python', 'frontendlauncher.py', 'visitconvert', 'xml2avt', 'mkgrdbl', 'xml2info', 'xml2java', 'visit0000.session.gui'] ['codecov', 'tselect', 'icpc', 'compilervars.csh', 'xild', 'map_opts', 'gdb-ia', 'ifortvars.sh', 'ifortvars.csh', 'profdcg', 'ifort', 'proforder', 'compilervars.sh', 'gcore-ia', 'iccvars.sh', 'xiar', 'icc', 'iccvars.csh', 'profmerge', 'fpp'] Warning accessing /home/dsu/Soft/Paraview/ParaView-5.5.0/bin gives errors: [Errno 2] No such file or directory: '/home/dsu/Soft/Paraview/ParaView-5.5.0/bin' ['mpeg2encode', 'visitprotocol', 'xml2cmake', 'makemili', 'text2polys', 'run_doxygen', 'frontendlauncher', 'xml2window', 'surfcomp', 'Doxyfile', 'xmltest', 'visit0000.session', 'time_annotation', 'visit_plugin', 'xmledit', 'xml2atts', 'curv3dprep', 'visit_transition', 'regen-ajp', 'visit_composite', 'visit', 'xml2plugin', 'xml2python', 'frontendlauncher.py', 'visitconvert', 'xml2avt', 'mkgrdbl', 'xml2info', 'xml2java', 'visit0000.session.gui'] ['codecov', 'tselect', 'icpc', 'compilervars.csh', 'xild', 'map_opts', 'gdb-ia', 'ifortvars.sh', 'ifortvars.csh', 'profdcg', 'ifort', 'proforder', 'compilervars.sh', 'gcore-ia', 'iccvars.sh', 'xiar', 'icc', 'iccvars.csh', 'profmerge', 'fpp'] Path provided by --with-executables-search-path ['win32feutils.dll', 'win32fe.exe'] Checking for program /Developer/NVIDIA/CUDA-6.5/bin/nvcc...not found Checking for program /home/dsu/Soft/PETSc/petsc-3.13.2/lib/petsc/bin/win32fe/nvcc...not found Unable to find programs ['nvcc'] providing listing of each search directory to help debug Path provided in Python program Warning accessing /Developer/NVIDIA/CUDA-6.5/bin gives errors: [Errno 2] No such file or directory: '/Developer/NVIDIA/CUDA-6.5/bin' Path provided by --with-executables-search-path ['win32feutils.dll', 'win32fe.exe'] Checking for program /usr/local/cuda/bin/nvcc...not found Checking for program /home/dsu/Soft/PETSc/petsc-3.13.2/lib/petsc/bin/win32fe/nvcc...not found Unable to find programs ['nvcc'] providing listing of each search directory to help debug Path provided in Python program Warning accessing /usr/local/cuda/bin gives errors: [Errno 2] No such file or directory: '/usr/local/cuda/bin' Path provided by --with-executables-search-path ['win32feutils.dll', 'win32fe.exe'] ================================================================================ TEST checkCUDAPreprocessor from config.setCompilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/setCompilers.py:750) TESTING: checkCUDAPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:750) Locate a functional CUDA preprocessor ================================================================================ TEST checkCxxCompiler from config.setCompilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/setCompilers.py:849) TESTING: checkCxxCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:849) Locate a functional Cxx compiler Checking for program /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/g++...not found Checking for program /home/dsu/Soft/PETSc/petsc-3.10.5/linux-gnu-opt/bin/g++...not found Checking for program /usr/local/sbin/g++...not found Checking for program /usr/local/bin/g++...not found Checking for program /usr/sbin/g++...not found Checking for program /usr/bin/g++...found Defined make macro "CXX" to "g++" Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: g++ -o /tmp/petsc-oluu3nld/config.setCompilers/conftest /tmp/petsc-oluu3nld/config.setCompilers/conftest.o Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: g++ -o /tmp/petsc-oluu3nld/config.setCompilers/conftest /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: g++ -o /tmp/petsc-oluu3nld/config.setCompilers/conftest /tmp/petsc-oluu3nld/config.setCompilers/conftest.o Testing executable /tmp/petsc-oluu3nld/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-oluu3nld/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-oluu3nld/config.setCompilers/conftest Running Executable WITHOUT threads to time it out Executing: g++ --version stdout: g++ (Ubuntu 5.4.0-6ubuntu1~16.04.12) 5.4.0 20160609 Copyright (C) 2015 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. ================================================================================ TEST checkCxxPreprocessor from config.setCompilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/setCompilers.py:890) TESTING: checkCxxPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:890) Locate a functional Cxx preprocessor Checking for program /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/g++...not found Checking for program /home/dsu/Soft/PETSc/petsc-3.10.5/linux-gnu-opt/bin/g++...not found Checking for program /usr/local/sbin/g++...not found Checking for program /usr/local/bin/g++...not found Checking for program /usr/sbin/g++...not found Checking for program /usr/bin/g++...found Defined make macro "CXXPP" to "g++ -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: g++ -E -I/tmp/petsc-oluu3nld/config.setCompilers /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc Preprocess stderr before filtering:: Preprocess stderr after filtering:: ================================================================================ TEST checkFortranCompiler from config.setCompilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/setCompilers.py:991) TESTING: checkFortranCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:991) Locate a functional Fortran compiler Checking for program /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/gfortran...not found Checking for program /home/dsu/Soft/PETSc/petsc-3.10.5/linux-gnu-opt/bin/gfortran...not found Checking for program /usr/local/sbin/gfortran...not found Checking for program /usr/local/bin/gfortran...not found Checking for program /usr/sbin/gfortran...not found Checking for program /usr/bin/gfortran...found Defined make macro "FC" to "gfortran" Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers /tmp/petsc-oluu3nld/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers /tmp/petsc-oluu3nld/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: gfortran -o /tmp/petsc-oluu3nld/config.setCompilers/conftest /tmp/petsc-oluu3nld/config.setCompilers/conftest.o Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers /tmp/petsc-oluu3nld/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: gfortran -o /tmp/petsc-oluu3nld/config.setCompilers/conftest /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers /tmp/petsc-oluu3nld/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: gfortran -o /tmp/petsc-oluu3nld/config.setCompilers/conftest /tmp/petsc-oluu3nld/config.setCompilers/conftest.o Testing executable /tmp/petsc-oluu3nld/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-oluu3nld/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-oluu3nld/config.setCompilers/conftest Running Executable WITHOUT threads to time it out Executing: gfortran --version stdout: GNU Fortran (Ubuntu 5.4.0-6ubuntu1~16.04.12) 5.4.0 20160609 Copyright (C) 2015 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING ================================================================================ TEST checkFortranPreprocessor from config.setCompilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/setCompilers.py:1028) TESTING: checkFortranPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:1028) Locate a functional Fortran preprocessor Checking for program /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/gfortran...not found Checking for program /home/dsu/Soft/PETSc/petsc-3.10.5/linux-gnu-opt/bin/gfortran...not found Checking for program /usr/local/sbin/gfortran...not found Checking for program /usr/local/bin/gfortran...not found Checking for program /usr/sbin/gfortran...not found Checking for program /usr/bin/gfortran...found Defined make macro "FPP" to "gfortran -E" Deleting "FPP" Checking for program /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/gfortran...not found Checking for program /home/dsu/Soft/PETSc/petsc-3.10.5/linux-gnu-opt/bin/gfortran...not found Checking for program /usr/local/sbin/gfortran...not found Checking for program /usr/local/bin/gfortran...not found Checking for program /usr/sbin/gfortran...not found Checking for program /usr/bin/gfortran...found Defined make macro "FPP" to "gfortran --use cpp32" Deleting "FPP" ================================================================================ TEST checkFortranComments from config.setCompilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/setCompilers.py:1050) TESTING: checkFortranComments from config.setCompilers(config/BuildSystem/config/setCompilers.py:1050) Make sure fortran comment "!" works Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers /tmp/petsc-oluu3nld/config.setCompilers/conftest.F90 Successful compile: Source: program main ! comment end Fortran comments can use ! in column 1 ================================================================================ TEST checkLargeFileIO from config.setCompilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/setCompilers.py:1181) TESTING: checkLargeFileIO from config.setCompilers(config/BuildSystem/config/setCompilers.py:1181) ================================================================================ TEST checkArchiver from config.setCompilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/setCompilers.py:1280) TESTING: checkArchiver from config.setCompilers(config/BuildSystem/config/setCompilers.py:1280) Check that the archiver exists and can make a library usable by the compiler Running Executable WITHOUT threads to time it out Executing: ar -V stdout: GNU ar (GNU Binutils for Ubuntu) 2.26.1 Copyright (C) 2015 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Running Executable WITHOUT threads to time it out Executing: ar -V stdout: GNU ar (GNU Binutils for Ubuntu) 2.26.1 Copyright (C) 2015 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/ar...not found Checking for program /home/dsu/Soft/PETSc/petsc-3.10.5/linux-gnu-opt/bin/ar...not found Checking for program /usr/local/sbin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/sbin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/ranlib...not found Checking for program /home/dsu/Soft/PETSc/petsc-3.10.5/linux-gnu-opt/bin/ranlib...not found Checking for program /usr/local/sbin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/sbin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" Running Executable WITHOUT threads to time it out Executing: /usr/bin/ar cr /tmp/petsc-oluu3nld/config.setCompilers/libconf1.a /tmp/petsc-oluu3nld/config.setCompilers/conf1.o Running Executable WITHOUT threads to time it out Executing: /usr/bin/ranlib -c /tmp/petsc-oluu3nld/config.setCompilers/libconf1.a Possible ERROR while running ranlib: stderr: /usr/bin/ranlib: invalid option -- 'c' Ranlib is not functional with your archiver. Try --with-ranlib=true if ranlib is unnecessary. Running Executable WITHOUT threads to time it out Executing: ar -V stdout: GNU ar (GNU Binutils for Ubuntu) 2.26.1 Copyright (C) 2015 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Running Executable WITHOUT threads to time it out Executing: ar -V stdout: GNU ar (GNU Binutils for Ubuntu) 2.26.1 Copyright (C) 2015 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/ar...not found Checking for program /home/dsu/Soft/PETSc/petsc-3.10.5/linux-gnu-opt/bin/ar...not found Checking for program /usr/local/sbin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/sbin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/ranlib...not found Checking for program /home/dsu/Soft/PETSc/petsc-3.10.5/linux-gnu-opt/bin/ranlib...not found Checking for program /usr/local/sbin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/sbin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib" Running Executable WITHOUT threads to time it out Executing: /usr/bin/ar cr /tmp/petsc-oluu3nld/config.setCompilers/libconf1.a /tmp/petsc-oluu3nld/config.setCompilers/conf1.o Running Executable WITHOUT threads to time it out Executing: /usr/bin/ranlib /tmp/petsc-oluu3nld/config.setCompilers/libconf1.a Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.setCompilers/conftest /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -L/tmp/petsc-oluu3nld/config.setCompilers -lconf1 Defined make macro "AR_FLAGS" to "cr" Defined make macro "AR_LIB_SUFFIX" to "a" ================================================================================ TEST checkSharedLinker from config.setCompilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/setCompilers.py:1394) TESTING: checkSharedLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1394) Check that the linker can produce shared libraries Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Checking shared linker gcc using flags ['-shared'] Checking for program /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/gcc...not found Checking for program /home/dsu/Soft/PETSc/petsc-3.10.5/linux-gnu-opt/bin/gcc...not found Checking for program /usr/local/sbin/gcc...not found Checking for program /usr/local/bin/gcc...not found Checking for program /usr/sbin/gcc...not found Checking for program /usr/bin/gcc...found Defined make macro "LD_SHARED" to "gcc" Trying C compiler flag Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.setCompilers/conftest -shared /tmp/petsc-oluu3nld/config.setCompilers/conftest.o Valid C linker flag -shared Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.setCompilers/libconftest.so -shared /tmp/petsc-oluu3nld/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-oluu3nld/config.setCompilers/conftest.o: relocation R_X86_64_32 against `.rodata' can not be used when making a shared object; recompile with -fPIC /tmp/petsc-oluu3nld/config.setCompilers/conftest.o: error adding symbols: Bad value collect2: error: ld returned 1 exit status Rejected C compiler flag because it was not compatible with shared linker gcc using flags ['-shared'] Running Executable WITHOUT threads to time it out Executing: gcc --help | head -n 20 stdout: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and Trying C compiler flag -fPIC Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -fPIC /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fPIC Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -fPIC /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.setCompilers/conftest -shared -fPIC /tmp/petsc-oluu3nld/config.setCompilers/conftest.o Valid C linker flag -shared Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -fPIC /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-oluu3nld/config.setCompilers/conftest.o Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -fPIC /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(void); int main() { int ret = foo(); if (ret) {} ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.setCompilers/conftest -fPIC /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -L/tmp/petsc-oluu3nld/config.setCompilers -lconftest Using shared linker gcc with flags ['-shared'] and library extension so Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux ================================================================================ TEST checkPIC from config.setCompilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/setCompilers.py:1128) TESTING: checkPIC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1128) Determine the PIC option for each compiler Trying Cxx for PIC code without any compiler flag Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-oluu3nld/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-oluu3nld/config.setCompilers/conftest.o: relocation R_X86_64_32 against `.rodata' can not be used when making a shared object; recompile with -fPIC /tmp/petsc-oluu3nld/config.setCompilers/conftest.o: error adding symbols: Bad value collect2: error: ld returned 1 exit status Rejected Cxx compiler flag because shared linker cannot handle it Running Executable WITHOUT threads to time it out Executing: g++ --help | head -n 20 stdout: Usage: g++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and Trying Cxx compiler flag -fPIC for PIC code Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -fPIC /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -fPIC Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -fPIC /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-oluu3nld/config.setCompilers/conftest.o Accepted Cxx compiler flag -fPIC for PIC code Trying FC for PIC code without any compiler flag Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers /tmp/petsc-oluu3nld/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers /tmp/petsc-oluu3nld/config.setCompilers/conftest.F90 Successful compile: Source: function foo(a) real:: a,x,bar common /xx/ x x=a foo = bar(x) end Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-oluu3nld/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-oluu3nld/config.setCompilers/conftest.o: relocation R_X86_64_32 against `xx_' can not be used when making a shared object; recompile with -fPIC /tmp/petsc-oluu3nld/config.setCompilers/conftest.o: error adding symbols: Bad value collect2: error: ld returned 1 exit status Rejected FC compiler flag because shared linker cannot handle it Running Executable WITHOUT threads to time it out Executing: gfortran --help | head -n 20 stdout: Usage: gfortran [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and Trying FC compiler flag -fPIC for PIC code Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -fPIC /tmp/petsc-oluu3nld/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag -fPIC Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -fPIC /tmp/petsc-oluu3nld/config.setCompilers/conftest.F90 Successful compile: Source: function foo(a) real:: a,x,bar common /xx/ x x=a foo = bar(x) end Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-oluu3nld/config.setCompilers/conftest.o Accepted FC compiler flag -fPIC for PIC code ================================================================================ TEST checkSharedLinkerPaths from config.setCompilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/setCompilers.py:1506) TESTING: checkSharedLinkerPaths from config.setCompilers(config/BuildSystem/config/setCompilers.py:1506) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Running Executable WITHOUT threads to time it out Executing: gcc -V Trying C linker flag -Wl,-rpath, Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -fPIC /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.setCompilers/conftest -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2 -fPIC /tmp/petsc-oluu3nld/config.setCompilers/conftest.o Valid C linker flag -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2 Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Running Executable WITHOUT threads to time it out Executing: gcc -V Trying Cxx linker flag -Wl,-rpath, Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -fPIC /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: g++ -o /tmp/petsc-oluu3nld/config.setCompilers/conftest -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2 /tmp/petsc-oluu3nld/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2 Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Running Executable WITHOUT threads to time it out Executing: gcc -V Trying FC linker flag -Wl,-rpath, Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -fPIC /tmp/petsc-oluu3nld/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: gfortran -o /tmp/petsc-oluu3nld/config.setCompilers/conftest -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2 -fPIC /tmp/petsc-oluu3nld/config.setCompilers/conftest.o Valid FC linker flag -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2 ================================================================================ TEST checkLibC from config.setCompilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/setCompilers.py:1541) TESTING: checkLibC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1541) Test whether we need to explicitly include libc in shared linking - Mac OSX requires an explicit reference to libc for shared linking Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -fPIC /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {void *chunk = malloc(31); free(chunk); return 0;} Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-oluu3nld/config.setCompilers/conftest.o Shared linking does not require an explicit libc reference ================================================================================ TEST checkDynamicLinker from config.setCompilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/setCompilers.py:1587) TESTING: checkDynamicLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1587) Check that the linker can dynamicaly load shared libraries Checking for header: dlfcn.h All intermediate test results are stored in /tmp/petsc-oluu3nld/config.headers Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_DLFCN_H" to "1" Checking for functions [dlopen dlsym dlclose] in library ['dl'] [] All intermediate test results are stored in /tmp/petsc-oluu3nld/config.libraries Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.libraries/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.libraries -fPIC /tmp/petsc-oluu3nld/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } char dlsym(); static void _check_dlsym() { dlsym(); } char dlclose(); static void _check_dlclose() { dlclose(); } int main() { _check_dlopen(); _check_dlsym(); _check_dlclose();; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.libraries/conftest -fPIC /tmp/petsc-oluu3nld/config.libraries/conftest.o -ldl Defined "HAVE_LIBDL" to "1" Adding ['dl'] to LIBS Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Checking dynamic linker gcc using flags ['-shared'] Checking for program /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/gcc...not found Checking for program /home/dsu/Soft/PETSc/petsc-3.10.5/linux-gnu-opt/bin/gcc...not found Checking for program /usr/local/sbin/gcc...not found Checking for program /usr/local/bin/gcc...not found Checking for program /usr/sbin/gcc...not found Checking for program /usr/bin/gcc...found Defined make macro "DYNAMICLINKER" to "gcc" Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.setCompilers -fPIC /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.setCompilers/conftest -shared -fPIC /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -ldl Valid C linker flag -shared Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.setCompilers -fPIC /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("test");return 0;} Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -ldl Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.setCompilers -fPIC /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { void *handle = dlopen("/tmp/petsc-oluu3nld/config.setCompilers/libconftest.so", 0); int (*foo)(void) = (int (*)(void)) dlsym(handle, "foo"); if (!foo) { printf("Could not load symbol\n"); return -1; } if ((*foo)()) { printf("Invalid return from foo()\n"); return -1; } if (dlclose(handle)) { printf("Could not close library\n"); return -1; } ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.setCompilers/conftest -fPIC /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -ldl Using dynamic linker gcc with flags ['-shared'] and library extension so ================================================================================ TEST output from config.setCompilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/setCompilers.py:1636) TESTING: output from config.setCompilers(config/BuildSystem/config/setCompilers.py:1636) Output module data as defines and substitutions Substituting "CC" with "gcc" Substituting "CFLAGS" with " -fPIC" Defined make macro "CC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "CPP" with "gcc -E" Substituting "CPPFLAGS" with "" Substituting "CXX" with "g++" Substituting "CXX_CXXFLAGS" with " -fPIC" Substituting "CXXFLAGS" with "" Substituting "CXX_LINKER_SLFLAG" with "-Wl,-rpath," Substituting "CXXPP" with "g++ -E" Substituting "CXXPPFLAGS" with "" Substituting "FC" with "gfortran" Substituting "FFLAGS" with " -fPIC" Defined make macro "FC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "LDFLAGS" with "" Substituting "LIBS" with "-ldl " Substituting "SHARED_LIBRARY_FLAG" with "-shared" child config.setCompilers 2.651581 ================================================================================ TEST checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(/home/dsu/Soft/PETSc/petsc-3.13.2/config/PETSc/options/sharedLibraries.py:36) TESTING: checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:36) ================================================================================ TEST configureSharedLibraries from PETSc.options.sharedLibraries(/home/dsu/Soft/PETSc/petsc-3.13.2/config/PETSc/options/sharedLibraries.py:52) TESTING: configureSharedLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:52) Checks whether shared libraries should be used, for which you must - Specify --with-shared-libraries - Have found a working shared linker Defines PETSC_USE_SHARED_LIBRARIES if they are used Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Defined make rule "shared_arch" with dependencies "shared_linux" and code [] Defined make macro "SONAME_FUNCTION" to "$(1).so.$(2)" Defined make macro "SL_LINKER_FUNCTION" to "-shared -Wl,-soname,$(call SONAME_FUNCTION,$(notdir $(1)),$(2))" Running Executable WITHOUT threads to time it out Executing: gcc -v Defined make macro "BUILDSHAREDLIB" to "yes" Defined "USE_SHARED_LIBRARIES" to "1" ================================================================================ TEST configureDynamicLibraries from PETSc.options.sharedLibraries(/home/dsu/Soft/PETSc/petsc-3.13.2/config/PETSc/options/sharedLibraries.py:97) TESTING: configureDynamicLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:97) Checks whether dynamic loading is available (with dlfcn.h and libdl) Defined "HAVE_DYNAMIC_LIBRARIES" to "1" ================================================================================ TEST configureSerializedFunctions from PETSc.options.sharedLibraries(/home/dsu/Soft/PETSc/petsc-3.13.2/config/PETSc/options/sharedLibraries.py:103) TESTING: configureSerializedFunctions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:103) Defines PETSC_SERIALIZE_FUNCTIONS if they are used Requires shared libraries child PETSc.options.sharedLibraries 0.014915 ================================================================================ TEST configureIndexSize from PETSc.options.indexTypes(/home/dsu/Soft/PETSc/petsc-3.13.2/config/PETSc/options/indexTypes.py:39) TESTING: configureIndexSize from PETSc.options.indexTypes(config/PETSc/options/indexTypes.py:39) Defined make macro "PETSC_INDEX_SIZE" to "32" child PETSc.options.indexTypes 0.001184 ================================================================================ TEST configureCompilerFlags from config.compilerFlags(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/compilerFlags.py:72) TESTING: configureCompilerFlags from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:72) Get the default compiler flags Defined make macro "C_VERSION" to "gcc (Ubuntu 5.4.0-6ubuntu1~16.04.12) 5.4.0 20160609" Defined make macro "MPICC_SHOW" to "Unavailable" Trying C compiler flag -Wall Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.setCompilers -fPIC -Wall /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wall Trying C compiler flag -Wwrite-strings Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.setCompilers -fPIC -Wall -Wwrite-strings /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wwrite-strings Trying C compiler flag -Wno-strict-aliasing Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wno-strict-aliasing Trying C compiler flag -Wno-unknown-pragmas Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wno-unknown-pragmas Trying C compiler flag -fstack-protector Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fstack-protector Trying C compiler flag -mfp16-format=ieee Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -mfp16-format=ieee /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 1 stderr: gcc: error: unrecognized command line option ‘-mfp16-format=ieee’ Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -mfp16-format=ieee due to nonzero status from link Rejecting compiler flag -mfp16-format=ieee due to gcc: error: unrecognized command line option ‘-mfp16-format=ieee’ PETSc Error: No output file produced Rejected C compiler flag -mfp16-format=ieee Trying C compiler flag -fvisibility=hidden Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fvisibility=hidden Trying C compiler flag -O3 Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -O3 Defined make macro "Cxx_VERSION" to "g++ (Ubuntu 5.4.0-6ubuntu1~16.04.12) 5.4.0 20160609" Defined make macro "MPICXX_SHOW" to "Unavailable" Trying Cxx compiler flag -Wall Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -Wall -fPIC /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wall Trying Cxx compiler flag -Wwrite-strings Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -Wall -Wwrite-strings -fPIC /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wwrite-strings Trying Cxx compiler flag -Wno-strict-aliasing Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -fPIC /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wno-strict-aliasing Trying Cxx compiler flag -Wno-unknown-pragmas Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fPIC /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wno-unknown-pragmas Trying Cxx compiler flag -fstack-protector Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fPIC /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -fstack-protector Trying Cxx compiler flag -fvisibility=hidden Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -fPIC /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -fvisibility=hidden Trying Cxx compiler flag -O3 Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -fPIC /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -O3 Defined make macro "FC_VERSION" to "GNU Fortran (Ubuntu 5.4.0-6ubuntu1~16.04.12) 5.4.0 20160609" Defined make macro "MPIFC_SHOW" to "Unavailable" Trying FC compiler flag -Wall Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -fPIC -Wall /tmp/petsc-oluu3nld/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag -Wall Trying FC compiler flag -ffree-line-length-0 Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -fPIC -Wall -ffree-line-length-0 /tmp/petsc-oluu3nld/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag -ffree-line-length-0 Trying FC compiler flag -Wno-unused-dummy-argument Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument /tmp/petsc-oluu3nld/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag -Wno-unused-dummy-argument Trying FC compiler flag -O3 Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-oluu3nld/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag -O3 child config.compilerFlags 0.762713 Running Executable WITHOUT threads to time it out Executing: gcc --help | head -n 20 stdout: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and ================================================================================ TEST checkRestrict from config.compilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/compilers.py:150) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:150) Check for the C/CXX restrict keyword Running Executable WITHOUT threads to time it out Executing: gcc -V All intermediate test results are stored in /tmp/petsc-oluu3nld/config.compilers Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.compilers/conftest.o -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-oluu3nld/config.compilers/conftest.c: In function ‘main’: /tmp/petsc-oluu3nld/config.compilers/conftest.c:5:20: warning: unused variable ‘x’ [-Wunused-variable] float * __restrict x;; ^ Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set C restrict keyword to __restrict Defined "C_RESTRICT" to "__restrict" ================================================================================ TEST checkCFormatting from config.compilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/compilers.py:405) TESTING: checkCFormatting from config.compilers(config/BuildSystem/config/compilers.py:405) Activate format string checking if using the GNU compilers ================================================================================ TEST checkCInline from config.compilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/compilers.py:120) TESTING: checkCInline from config.compilers(config/BuildSystem/config/compilers.py:120) Check for C inline keyword Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.compilers/conftest.o -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set C Inline keyword to inline Defined "C_INLINE" to "inline" ================================================================================ TEST checkDynamicLoadFlag from config.compilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/compilers.py:416) TESTING: checkDynamicLoadFlag from config.compilers(config/BuildSystem/config/compilers.py:416) Checks that dlopen() takes RTLD_XXX, and defines PETSC_HAVE_RTLD_XXX if it does Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.compilers/conftest.o -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LAZY);dlopen(libname, RTLD_NOW);dlopen(libname, RTLD_LOCAL);dlopen(libname, RTLD_GLOBAL); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.compilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_LAZY" to "1" Defined "HAVE_RTLD_NOW" to "1" Defined "HAVE_RTLD_LOCAL" to "1" Defined "HAVE_RTLD_GLOBAL" to "1" ================================================================================ TEST checkCLibraries from config.compilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/compilers.py:214) TESTING: checkCLibraries from config.compilers(config/BuildSystem/config/compilers.py:214) Determines the libraries needed to link with C compiled code Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.compilers/conftest.o -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void asub(void) {char s[16];printf("testing %s",s);} Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-oluu3nld/config.compilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.F90 Successful compile: Source: program main print*,'testing' stop end Running Executable WITHOUT threads to time it out Executing: gfortran -o /tmp/petsc-oluu3nld/config.compilers/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.o /tmp/petsc-oluu3nld/config.compilers/confc.o -ldl C libraries are not needed when using Fortran linker Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.compilers/conftest.o -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void asub(void) {char s[16];printf("testing %s",s);} Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-oluu3nld/config.compilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -fPIC /tmp/petsc-oluu3nld/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Running Executable WITHOUT threads to time it out Executing: g++ -o /tmp/petsc-oluu3nld/config.compilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.o /tmp/petsc-oluu3nld/config.compilers/confc.o -ldl C libraries are not needed when using C++ linker ================================================================================ TEST checkDependencyGenerationFlag from config.compilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/compilers.py:1363) TESTING: checkDependencyGenerationFlag from config.compilers(config/BuildSystem/config/compilers.py:1363) Check if -MMD works for dependency generation, and add it if it does Trying C compiler flag -MMD -MP Defined make macro "C_DEPFLAGS" to "-MMD -MP" Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -MMD -MP /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Trying Cxx compiler flag -MMD -MP Defined make macro "CXX_DEPFLAGS" to "-MMD -MP" Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -fPIC -MMD -MP /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ================================================================================ TEST checkC99Flag from config.compilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/compilers.py:1408) TESTING: checkC99Flag from config.compilers(config/BuildSystem/config/compilers.py:1408) Check for -std=c99 or equivalent flag Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-oluu3nld/config.setCompilers/conftest.c: In function ‘main’: /tmp/petsc-oluu3nld/config.setCompilers/conftest.c:7:11: warning: variable ‘x’ set but not used [-Wunused-but-set-variable] float x[2],y; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { float x[2],y; y = FLT_ROUNDS; // c++ comment int j = 2; for (int i=0; i<2; i++){ x[i] = i*j*y; } ; return 0; } Accepted C99 compile flag: Defined "HAVE_C99" to "1" Running Executable WITHOUT threads to time it out Executing: g++ --help | head -n 20 stdout: Usage: g++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and ================================================================================ TEST checkRestrict from config.compilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/compilers.py:150) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:150) Check for the C/CXX restrict keyword Running Executable WITHOUT threads to time it out Executing: gcc -V Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-oluu3nld/config.compilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -fPIC /tmp/petsc-oluu3nld/config.compilers/conftest.cc Possible ERROR while running compiler: stderr: /tmp/petsc-oluu3nld/config.compilers/conftest.cc: In function ‘int main()’: /tmp/petsc-oluu3nld/config.compilers/conftest.cc:5:20: warning: unused variable ‘x’ [-Wunused-variable] float * __restrict x;; ^ Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set Cxx restrict keyword to __restrict Defined "CXX_RESTRICT" to "__restrict" ================================================================================ TEST checkCxxOptionalExtensions from config.compilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/compilers.py:435) TESTING: checkCxxOptionalExtensions from config.compilers(config/BuildSystem/config/compilers.py:435) Check whether the C++ compiler (IBM xlC, OSF5) need special flag for .c files which contain C++ Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -fPIC /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } ================================================================================ TEST checkCxxInline from config.compilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/compilers.py:135) TESTING: checkCxxInline from config.compilers(config/BuildSystem/config/compilers.py:135) Check for C++ inline keyword Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-oluu3nld/config.compilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -fPIC /tmp/petsc-oluu3nld/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set Cxx Inline keyword to inline Defined "CXX_INLINE" to "inline" ================================================================================ TEST checkCxxLibraries from config.compilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/compilers.py:547) TESTING: checkCxxLibraries from config.compilers(config/BuildSystem/config/compilers.py:547) Determines the libraries needed to link with C++ from C and Fortran Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-oluu3nld/config.compilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -fPIC /tmp/petsc-oluu3nld/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.compilers/conftest.o -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.compilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.o /tmp/petsc-oluu3nld/config.compilers/confc.o -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-oluu3nld/config.compilers/confc.o: In function `asub()': conftest.cc:(.text+0x7): undefined reference to `__cxa_allocate_exception' conftest.cc:(.text+0xe): undefined reference to `typeinfo for int' conftest.cc:(.text+0x1e): undefined reference to `__cxa_throw' conftest.cc:(.text+0x2c): undefined reference to `__cxa_begin_catch' conftest.cc:(.text+0x33): undefined reference to `std::cout' conftest.cc:(.text+0x3f): undefined reference to `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)' conftest.cc:(.text+0x4d): undefined reference to `__cxa_end_catch' conftest.cc:(.text+0x45): undefined reference to `__cxa_end_catch' /tmp/petsc-oluu3nld/config.compilers/confc.o: In function `_GLOBAL__sub_I_conftest.cc': conftest.cc:(.text.startup+0xc): undefined reference to `std::ios_base::Init::Init()' conftest.cc:(.text.startup+0x13): undefined reference to `std::ios_base::Init::~Init()' /tmp/petsc-oluu3nld/config.compilers/confc.o:(.data.DW.ref._ZTIi[DW.ref._ZTIi]+0x0): undefined reference to `typeinfo for int' /tmp/petsc-oluu3nld/config.compilers/confc.o:(.data.DW.ref.__gxx_personality_v0[DW.ref.__gxx_personality_v0]+0x0): undefined reference to `__gxx_personality_v0' collect2: error: ld returned 1 exit status Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-oluu3nld/config.compilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -fPIC /tmp/petsc-oluu3nld/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.compilers/conftest.o -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.compilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.o /tmp/petsc-oluu3nld/config.compilers/confc.o -lstdc++ -ldl compilers: C++ requires -lstdc++ to link with C compiler Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-oluu3nld/config.compilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -fPIC /tmp/petsc-oluu3nld/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-oluu3nld/config.compilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.F90 Successful compile: Source: program main print*,'testing' stop end Running Executable WITHOUT threads to time it out Executing: gfortran -o /tmp/petsc-oluu3nld/config.compilers/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.o /tmp/petsc-oluu3nld/config.compilers/confc.o -lstdc++ -ldl C++ libraries are not needed when using FC linker ================================================================================ TEST checkCxxDialect from config.compilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/compilers.py:463) TESTING: checkCxxDialect from config.compilers(config/BuildSystem/config/compilers.py:463) Determine the Cxx dialect supported by the compiler [and correspoding compiler option - if any]. -with-cxx-dialect can take options: auto: use highest dialect configure can determine cxx17: [future?] cxx14: gnu++14 or c++14 cxx11: gnu++11 or c++11 0: disable CxxDialect check and use compiler default checkCxxDialect: checking CXX11 with flag: Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -fPIC /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc Possible ERROR while running compiler: exit code 1 stderr: In file included from /usr/include/c++/5/random:35:0, from /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc:4: /usr/include/c++/5/bits/c++0x_warning.h:32:2: error: #error This file requires compiler and library support for the ISO C++ 2011 standard. This support must be enabled with the -std=c++11 or -std=gnu++11 compiler options. #error This file requires compiler and library support \ ^ /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc:7:11: warning: identifier ‘constexpr’ is a keyword in C++11 [-Wc++0x-compat] template constexpr T Cubed( T x ) { return x*x*x; } ^ /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc:7:32: error: ‘constexpr’ does not name a type template constexpr T Cubed( T x ) { return x*x*x; } ^ /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc:7:32: note: C++11 ‘constexpr’ only available with -std=c++11 or -std=gnu++11 /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc: In function ‘int main()’: /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc:12:11: error: ‘random_device’ is not a member of ‘std’ std::random_device rd; ^ /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc:13:11: error: ‘mt19937’ is not a member of ‘std’ std::mt19937 mt(rd()); ^ /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc:14:11: error: ‘normal_distribution’ is not a member of ‘std’ std::normal_distribution dist(0,1); ^ /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc:14:36: error: expected primary-expression before ‘double’ std::normal_distribution dist(0,1); ^ /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc:15:33: error: ‘mt’ was not declared in this scope const double x = dist(mt); ^ /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc:15:35: error: ‘dist’ was not declared in this scope const double x = dist(mt); ^ Source: #include "confdefs.h" #include "conffix.h" #include #include #include template constexpr T Cubed( T x ) { return x*x*x; } int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); std::cout << x; ; return 0; } Rejecting compiler flag due to nonzero status from link Rejecting compiler flag due to In file included from /usr/include/c++/5/random:35:0, from /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc:4: /usr/include/c++/5/bits/c++0x_warning.h:32:2: error: #error This file requires compiler and library support for the ISO C++ 2011 standard. This support must be enabled with the -std=c++11 or -std=gnu++11 compiler options. #error This file requires compiler and library support \ ^ /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc:7:11: warning: identifier ‘constexpr’ is a keyword in C++11 [-Wc++0x-compat] template constexpr T Cubed( T x ) { return x*x*x; } ^ /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc:7:32: error: ‘constexpr’ does not name a type template constexpr T Cubed( T x ) { return x*x*x; } ^ /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc:7:32: note: C++11 ‘constexpr’ only available with -std=c++11 or -std=gnu++11 /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc: In function ‘int main()’: /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc:12:11: error: ‘random_device’ is not a member of ‘std’ std::random_device rd; ^ /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc:13:11: error: ‘mt19937’ is not a member of ‘std’ std::mt19937 mt(rd()); ^ /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc:14:11: error: ‘normal_distribution’ is not a member of ‘std’ std::normal_distribution dist(0,1); ^ /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc:14:36: error: expected primary-expression before ‘double’ std::normal_distribution dist(0,1); ^ /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc:15:33: error: ‘mt’ was not declared in this scope const double x = dist(mt); ^ /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc:15:35: error: ‘dist’ was not declared in this scope const double x = dist(mt); ^ PETSc Error: No output file produced checkCxxDialect: checking CXX11 with flag: -std=gnu++11 Defined "HAVE_CXX_DIALECT_CXX11" to "1" Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -std=gnu++11 -fPIC /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include template constexpr T Cubed( T x ) { return x*x*x; } int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); std::cout << x; ; return 0; } Running Executable WITHOUT threads to time it out Executing: g++ -V ================================================================================ TEST checkFortranNameMangling from config.compilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/compilers.py:854) TESTING: checkFortranNameMangling from config.compilers(config/BuildSystem/config/compilers.py:854) Checks Fortran name mangling, and defines HAVE_FORTRAN_UNDERSCORE, HAVE_FORTRAN_NOUNDERSCORE, HAVE_FORTRAN_CAPS Testing Fortran mangling type underscore with code void d1chk_(void){return;} Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.compilers/conftest.o -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1chk_(void){return;} Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-oluu3nld/config.compilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.F90 Successful compile: Source: program main call d1chk() end Running Executable WITHOUT threads to time it out Executing: gfortran -o /tmp/petsc-oluu3nld/config.compilers/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.o /tmp/petsc-oluu3nld/config.compilers/confc.o -lstdc++ -ldl compilers: Fortran name mangling is underscore Defined "HAVE_FORTRAN_UNDERSCORE" to "1" Running Executable WITHOUT threads to time it out Executing: gfortran --version stdout: GNU Fortran (Ubuntu 5.4.0-6ubuntu1~16.04.12) 5.4.0 20160609 Copyright (C) 2015 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING Defined "FORTRAN_CHARLEN_T" to "int" ================================================================================ TEST checkFortranNameManglingDouble from config.compilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/compilers.py:892) TESTING: checkFortranNameManglingDouble from config.compilers(config/BuildSystem/config/compilers.py:892) Checks if symbols containing an underscore append an extra underscore, and defines HAVE_FORTRAN_UNDERSCORE_UNDERSCORE if necessary Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.compilers/conftest.o -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1_chk__(void){return;} Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-oluu3nld/config.compilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.F90 Successful compile: Source: program main call d1_chk() end Running Executable WITHOUT threads to time it out Executing: gfortran -o /tmp/petsc-oluu3nld/config.compilers/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.o /tmp/petsc-oluu3nld/config.compilers/confc.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-oluu3nld/config.compilers/conftest.o: In function `main': conftest.F90:(.text.startup+0x1d): undefined reference to `d1_chk_' collect2: error: ld returned 1 exit status ================================================================================ TEST checkFortranLibraries from config.compilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/compilers.py:902) TESTING: checkFortranLibraries from config.compilers(config/BuildSystem/config/compilers.py:902) Substitutes for FLIBS the libraries needed to link with Fortran This macro is intended to be used in those situations when it is necessary to mix, e.g. C++ and Fortran 77, source code into a single program or shared library. For example, if object files from a C++ and Fortran 77 compiler must be linked together, then the C++ compiler/linker must be used for linking (since special C++-ish things need to happen at link time like calling global constructors, instantiating templates, enabling exception support, etc.). However, the Fortran 77 intrinsic and run-time libraries must be linked in as well, but the C++ compiler/linker does not know how to add these Fortran 77 libraries. This code was translated from the autoconf macro which was packaged in its current form by Matthew D. Langston . However, nearly all of this macro came from the OCTAVE_FLIBS macro in octave-2.0.13/aclocal.m4, and full credit should go to John W. Eaton for writing this extremely useful macro. Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-oluu3nld/config.compilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.F90 Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-oluu3nld/config.compilers/conftest.F90:2:0: #include ^ Fatal Error: mpif.h: No such file or directory compilation terminated. Source: program main #include call MPI_Allreduce() end Compile failed inside link Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-oluu3nld/config.compilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.F90 Successful compile: Source: subroutine asub() print*,'testing' return end Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.compilers/conftest.o -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern void asub_(void); int main(int argc,char **args) { asub_(); return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.compilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.o /tmp/petsc-oluu3nld/config.compilers/confc.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-oluu3nld/config.compilers/confc.o: In function `asub_': conftest.F90:(.text+0x2f): undefined reference to `_gfortran_st_write' conftest.F90:(.text+0x43): undefined reference to `_gfortran_transfer_character_write' conftest.F90:(.text+0x4b): undefined reference to `_gfortran_st_write_done' collect2: error: ld returned 1 exit status Fortran code cannot directly be linked with C linker, therefore will determine needed Fortran libraries Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-oluu3nld/config.compilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: gfortran -o /tmp/petsc-oluu3nld/config.compilers/conftest -v -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.o -lstdc++ -ldl Possible ERROR while running linker: stderr: Driving: gfortran -o /tmp/petsc-oluu3nld/config.compilers/conftest -v -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.o -lstdc++ -ldl -l gfortran -l m -shared-libgcc Using built-in specs. COLLECT_GCC=gfortran COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/5/lto-wrapper Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 5.4.0-6ubuntu1~16.04.12' --with-bugurl=file:///usr/share/doc/gcc-5/README.Bugs --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-5 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx --enable-plugin --with-system-zlib --disable-browser-plugin --enable-java-awt=gtk --enable-gtk-cairo --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-5-amd64/jre --enable-java-home --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-5-amd64 --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-5-amd64 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --enable-objc-gc --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 5.4.0 20160609 (Ubuntu 5.4.0-6ubuntu1~16.04.12) Reading specs from /usr/lib/gcc/x86_64-linux-gnu/5/libgfortran.spec rename spec lib to liborig COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-oluu3nld/config.compilers/conftest' '-v' '-fPIC' '-Wall' '-ffree-line-length-0' '-Wno-unused-dummy-argument' '-O3' '-shared-libgcc' '-mtune=generic' '-march=x86-64' COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/5/:/usr/lib/gcc/x86_64-linux-gnu/5/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/5/:/usr/lib/gcc/x86_64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/5/:/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/5/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/5/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-oluu3nld/config.compilers/conftest' '-v' '-fPIC' '-Wall' '-ffree-line-length-0' '-Wno-unused-dummy-argument' '-O3' '-shared-libgcc' '-mtune=generic' '-march=x86-64' /usr/lib/gcc/x86_64-linux-gnu/5/collect2 -plugin /usr/lib/gcc/x86_64-linux-gnu/5/liblto_plugin.so -plugin-opt=/usr/lib/gcc/x86_64-linux-gnu/5/lto-wrapper -plugin-opt=-fresolution=/tmp/ccKUF3Ms.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lquadmath -plugin-opt=-pass-through=-lm -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --sysroot=/ --build-id --eh-frame-hdr -m elf_x86_64 --hash-style=gnu --as-needed -dynamic-linker /lib64/ld-linux-x86-64.so.2 -z relro -o /tmp/petsc-oluu3nld/config.compilers/conftest /usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/crt1.o /usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/5/crtbegin.o -L/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/5/../../.. /tmp/petsc-oluu3nld/config.compilers/conftest.o -lstdc++ -ldl -lgfortran -lm -lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-linux-gnu/5/crtend.o /usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/crtn.o compilers: Checking arg Driving: compilers: Unknown arg Driving: compilers: Checking arg gfortran compilers: Unknown arg gfortran compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/petsc-oluu3nld/config.compilers/conftest compilers: Unknown arg /tmp/petsc-oluu3nld/config.compilers/conftest compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg -fPIC compilers: Unknown arg -fPIC compilers: Checking arg -Wall compilers: Unknown arg -Wall compilers: Checking arg -ffree-line-length-0 compilers: Unknown arg -ffree-line-length-0 compilers: Checking arg -Wno-unused-dummy-argument compilers: Unknown arg -Wno-unused-dummy-argument compilers: Checking arg -O3 compilers: Unknown arg -O3 compilers: Checking arg /tmp/petsc-oluu3nld/config.compilers/conftest.o compilers: Unknown arg /tmp/petsc-oluu3nld/config.compilers/conftest.o compilers: Checking arg -lstdc++ compilers: Found library: -lstdc++ compilers: Checking arg -ldl compilers: Found library: -ldl compilers: Checking arg -l compilers: Found canonical library: -lgfortran compilers: Checking arg -l compilers: Found canonical library: -lm compilers: Checking arg -shared-libgcc compilers: Unknown arg -shared-libgcc compilers: Checking arg Using compilers: Unknown arg Using compilers: Checking arg built-in compilers: Unknown arg built-in compilers: Checking arg specs. compilers: Unknown arg specs. compilers: Checking arg COLLECT_GCC=gfortran compilers: Unknown arg COLLECT_GCC=gfortran compilers: Checking arg COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/5/lto-wrapper compilers: Unknown arg COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/5/lto-wrapper compilers: Checking arg Target: compilers: Unknown arg Target: compilers: Checking arg x86_64-linux-gnu compilers: Unknown arg x86_64-linux-gnu compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg ../src/configure compilers: Unknown arg ../src/configure compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg --with-pkgversion= compilers: Unknown arg --with-pkgversion= compilers: Checking arg --with-bugurl=file:///usr/share/doc/gcc-5/README.Bugs compilers: Unknown arg --with-bugurl=file:///usr/share/doc/gcc-5/README.Bugs compilers: Checking arg --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ compilers: Unknown arg --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ compilers: Checking arg --prefix=/usr compilers: Unknown arg --prefix=/usr compilers: Checking arg --program-suffix=-5 compilers: Unknown arg --program-suffix=-5 compilers: Checking arg --enable-shared compilers: Unknown arg --enable-shared compilers: Checking arg --enable-linker-build-id compilers: Unknown arg --enable-linker-build-id compilers: Checking arg --libexecdir=/usr/lib compilers: Unknown arg --libexecdir=/usr/lib compilers: Checking arg --without-included-gettext compilers: Unknown arg --without-included-gettext compilers: Checking arg --enable-threads=posix compilers: Unknown arg --enable-threads=posix compilers: Checking arg --libdir=/usr/lib compilers: Unknown arg --libdir=/usr/lib compilers: Checking arg --enable-nls compilers: Unknown arg --enable-nls compilers: Checking arg --with-sysroot=/ compilers: Unknown arg --with-sysroot=/ compilers: Checking arg --enable-clocale=gnu compilers: Unknown arg --enable-clocale=gnu compilers: Checking arg --enable-libstdcxx-debug compilers: Unknown arg --enable-libstdcxx-debug compilers: Checking arg --enable-libstdcxx-time=yes compilers: Unknown arg --enable-libstdcxx-time=yes compilers: Checking arg --with-default-libstdcxx-abi=new compilers: Unknown arg --with-default-libstdcxx-abi=new compilers: Checking arg --enable-gnu-unique-object compilers: Unknown arg --enable-gnu-unique-object compilers: Checking arg --disable-vtable-verify compilers: Unknown arg --disable-vtable-verify compilers: Checking arg --enable-libmpx compilers: Unknown arg --enable-libmpx compilers: Checking arg --enable-plugin compilers: Unknown arg --enable-plugin compilers: Checking arg --with-system-zlib compilers: Unknown arg --with-system-zlib compilers: Checking arg --disable-browser-plugin compilers: Unknown arg --disable-browser-plugin compilers: Checking arg --enable-java-awt=gtk compilers: Unknown arg --enable-java-awt=gtk compilers: Checking arg --enable-gtk-cairo compilers: Unknown arg --enable-gtk-cairo compilers: Checking arg --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-5-amd64/jre compilers: Unknown arg --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-5-amd64/jre compilers: Checking arg --enable-java-home compilers: Unknown arg --enable-java-home compilers: Checking arg --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-5-amd64 compilers: Unknown arg --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-5-amd64 compilers: Checking arg --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-5-amd64 compilers: Unknown arg --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-5-amd64 compilers: Checking arg --with-arch-directory=amd64 compilers: Unknown arg --with-arch-directory=amd64 compilers: Checking arg --with-ecj-jar=/usr/share/java/eclipse-ecj.jar compilers: Unknown arg --with-ecj-jar=/usr/share/java/eclipse-ecj.jar compilers: Checking arg --enable-objc-gc compilers: Unknown arg --enable-objc-gc compilers: Checking arg --enable-multiarch compilers: Unknown arg --enable-multiarch compilers: Checking arg --disable-werror compilers: Unknown arg --disable-werror compilers: Checking arg --with-arch-32=i686 compilers: Unknown arg --with-arch-32=i686 compilers: Checking arg --with-abi=m64 compilers: Unknown arg --with-abi=m64 compilers: Checking arg --with-multilib-list=m32,m64,mx32 compilers: Unknown arg --with-multilib-list=m32,m64,mx32 compilers: Checking arg --enable-multilib compilers: Unknown arg --enable-multilib compilers: Checking arg --with-tune=generic compilers: Unknown arg --with-tune=generic compilers: Checking arg --enable-checking=release compilers: Unknown arg --enable-checking=release compilers: Checking arg --build=x86_64-linux-gnu compilers: Unknown arg --build=x86_64-linux-gnu compilers: Checking arg --host=x86_64-linux-gnu compilers: Unknown arg --host=x86_64-linux-gnu compilers: Checking arg --target=x86_64-linux-gnu compilers: Unknown arg --target=x86_64-linux-gnu compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 5.4.0 compilers: Unknown arg 5.4.0 compilers: Checking arg 20160609 compilers: Unknown arg 20160609 compilers: Checking arg (Ubuntu compilers: Unknown arg (Ubuntu compilers: Checking arg 5.4.0-6ubuntu1~16.04.12) compilers: Unknown arg 5.4.0-6ubuntu1~16.04.12) compilers: Checking arg Reading compilers: Unknown arg Reading compilers: Checking arg specs compilers: Unknown arg specs compilers: Checking arg from compilers: Unknown arg from compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/5/libgfortran.spec compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/5/libgfortran.spec compilers: Checking arg rename compilers: Unknown arg rename compilers: Checking arg spec compilers: Unknown arg spec compilers: Checking arg lib compilers: Unknown arg lib compilers: Checking arg to compilers: Unknown arg to compilers: Checking arg liborig compilers: Unknown arg liborig compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/5/:/usr/lib/gcc/x86_64-linux-gnu/5/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/5/:/usr/lib/gcc/x86_64-linux-gnu/ compilers: Skipping arg COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/5/:/usr/lib/gcc/x86_64-linux-gnu/5/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/5/:/usr/lib/gcc/x86_64-linux-gnu/ compilers: Checking arg LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/5/:/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/5/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/5/../../../:/lib/:/usr/lib/ compilers: Skipping arg LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/5/:/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/5/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/5/../../../:/lib/:/usr/lib/ compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/5/collect2 compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/5/collect2 compilers: Checking arg -plugin compilers: Unknown arg -plugin compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/5/liblto_plugin.so compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/5/liblto_plugin.so compilers: Checking arg -plugin-opt=/usr/lib/gcc/x86_64-linux-gnu/5/lto-wrapper compilers: Unknown arg -plugin-opt=/usr/lib/gcc/x86_64-linux-gnu/5/lto-wrapper compilers: Checking arg -plugin-opt=-fresolution=/tmp/ccKUF3Ms.res compilers: Unknown arg -plugin-opt=-fresolution=/tmp/ccKUF3Ms.res compilers: Checking arg -plugin-opt=-pass-through=-lgcc_s compilers: Unknown arg -plugin-opt=-pass-through=-lgcc_s compilers: Checking arg -plugin-opt=-pass-through=-lgcc compilers: Unknown arg -plugin-opt=-pass-through=-lgcc compilers: Checking arg -plugin-opt=-pass-through=-lquadmath compilers: Unknown arg -plugin-opt=-pass-through=-lquadmath compilers: Checking arg -plugin-opt=-pass-through=-lm compilers: Unknown arg -plugin-opt=-pass-through=-lm compilers: Checking arg -plugin-opt=-pass-through=-lgcc_s compilers: Unknown arg -plugin-opt=-pass-through=-lgcc_s compilers: Checking arg -plugin-opt=-pass-through=-lgcc compilers: Unknown arg -plugin-opt=-pass-through=-lgcc compilers: Checking arg -plugin-opt=-pass-through=-lc compilers: Unknown arg -plugin-opt=-pass-through=-lc compilers: Checking arg -plugin-opt=-pass-through=-lgcc_s compilers: Unknown arg -plugin-opt=-pass-through=-lgcc_s compilers: Checking arg -plugin-opt=-pass-through=-lgcc compilers: Unknown arg -plugin-opt=-pass-through=-lgcc compilers: Checking arg --sysroot=/ compilers: Unknown arg --sysroot=/ compilers: Checking arg --build-id compilers: Unknown arg --build-id compilers: Checking arg --eh-frame-hdr compilers: Unknown arg --eh-frame-hdr compilers: Checking arg -m compilers: Unknown arg -m compilers: Checking arg elf_x86_64 compilers: Unknown arg elf_x86_64 compilers: Checking arg --hash-style=gnu compilers: Unknown arg --hash-style=gnu compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -dynamic-linker compilers: Unknown arg -dynamic-linker compilers: Checking arg /lib64/ld-linux-x86-64.so.2 compilers: Unknown arg /lib64/ld-linux-x86-64.so.2 compilers: Checking arg -z compilers: Unknown arg -z compilers: Checking arg relro compilers: Unknown arg relro compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/petsc-oluu3nld/config.compilers/conftest compilers: Unknown arg /tmp/petsc-oluu3nld/config.compilers/conftest compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/crt1.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/crt1.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/crti.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/crti.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/5/crtbegin.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/5/crtbegin.o compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/5 compilers: Found library directory: -L/usr/lib/gcc/x86_64-linux-gnu/5 compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu compilers: Found library directory: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../../lib compilers: Checking arg -L/lib/x86_64-linux-gnu compilers: Found library directory: -L/lib/x86_64-linux-gnu compilers: Checking arg -L/lib/../lib compilers: Checking arg -L/usr/lib/x86_64-linux-gnu compilers: Already in lflags so skipping: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/../lib compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/5/../../.. compilers: Checking arg /tmp/petsc-oluu3nld/config.compilers/conftest.o compilers: Unknown arg /tmp/petsc-oluu3nld/config.compilers/conftest.o compilers: Checking arg -lstdc++ compilers: Already in lflags: -lstdc++ compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -lgfortran compilers: Found library: -lgfortran compilers: Checking arg -lm compilers: Found library: -lm compilers: Checking arg -lgcc_s compilers: Found library: -lgcc_s compilers: Checking arg -lgcc compilers: Found system library therefore skipping: -lgcc compilers: Checking arg -lquadmath compilers: Found library: -lquadmath compilers: Checking arg -lm compilers: Already in lflags: -lm compilers: Checking arg -lgcc_s compilers: Already in lflags: -lgcc_s compilers: Checking arg -lgcc compilers: Found system library therefore skipping: -lgcc compilers: Checking arg -lc compilers: Found system library therefore skipping: -lc compilers: Checking arg -lgcc_s compilers: Already in lflags: -lgcc_s compilers: Checking arg -lgcc compilers: Found system library therefore skipping: -lgcc compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/5/crtend.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/5/crtend.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/crtn.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/crtn.o compilers: Libraries needed to link Fortran code with the C linker: ['-lstdc++', '-ldl', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/5', '-L/usr/lib/gcc/x86_64-linux-gnu/5', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lgcc_s', '-lquadmath'] compilers: Libraries needed to link Fortran main with the C linker: [] compilers: Check that Fortran libraries can be used with C as the linker Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.setCompilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -lstdc++ -ldl -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -ldl Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.setCompilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -lstdc++ -ldl -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.setCompilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -lstdc++ -ldl -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -ldl Testing executable /tmp/petsc-oluu3nld/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-oluu3nld/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-oluu3nld/config.setCompilers/conftest compilers: Check that Fortran libraries can be used with C++ as linker compilers: Fortran libraries can be used from C++ Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -fPIC -std=gnu++11 /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -fPIC -std=gnu++11 /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: g++ -o /tmp/petsc-oluu3nld/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -lstdc++ -ldl -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -ldl Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -fPIC -std=gnu++11 /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: g++ -o /tmp/petsc-oluu3nld/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -lstdc++ -ldl -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -fPIC -std=gnu++11 /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: g++ -o /tmp/petsc-oluu3nld/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -lstdc++ -ldl -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -ldl Testing executable /tmp/petsc-oluu3nld/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-oluu3nld/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-oluu3nld/config.setCompilers/conftest ================================================================================ TEST checkFortranLinkingCxx from config.compilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/compilers.py:1328) TESTING: checkFortranLinkingCxx from config.compilers(config/BuildSystem/config/compilers.py:1328) Check that Fortran can link C++ libraries Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-oluu3nld/config.compilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -fPIC -std=gnu++11 /tmp/petsc-oluu3nld/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void foo(void){d1chk_();} Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-oluu3nld/config.compilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -fPIC -std=gnu++11 /tmp/petsc-oluu3nld/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void d1chk_(void){return;} Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-oluu3nld/config.compilers/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.F90 Successful compile: Source: program main call d1chk() end Running Executable WITHOUT threads to time it out Executing: gfortran -o /tmp/petsc-oluu3nld/config.compilers/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.o /tmp/petsc-oluu3nld/config.compilers/cxxobj.o /tmp/petsc-oluu3nld/config.compilers/confc.o -lstdc++ -ldl compilers: Fortran can link C++ functions ================================================================================ TEST setupFrameworkCompilers from config.compilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/compilers.py:1473) TESTING: setupFrameworkCompilers from config.compilers(config/BuildSystem/config/compilers.py:1473) child config.compilers 3.425885 ================================================================================ TEST configureClosure from config.utilities.closure(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/utilities/closure.py:17) TESTING: configureClosure from config.utilities.closure(config/BuildSystem/config/utilities/closure.py:17) Determine if Apple ^close syntax is supported in C All intermediate test results are stored in /tmp/petsc-oluu3nld/config.utilities.closure Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.utilities.closure/conftest.o -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.utilities.closure/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-oluu3nld/config.utilities.closure/conftest.c: In function ‘main’: /tmp/petsc-oluu3nld/config.utilities.closure/conftest.c:6:6: error: expected identifier or ‘(’ before ‘^’ token int (^closure)(int);; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int (^closure)(int);; return 0; } Compile failed inside link child config.utilities.closure 0.031296 ================================================================================ TEST checkFortranTypeSizes from config.compilersFortran(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/compilersFortran.py:56) TESTING: checkFortranTypeSizes from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:56) Check whether real*8 is supported and suggest flags which will allow support All intermediate test results are stored in /tmp/petsc-oluu3nld/config.compilersFortran Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-oluu3nld/config.compilersFortran/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.compilersFortran -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-oluu3nld/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: stderr: /tmp/petsc-oluu3nld/config.compilersFortran/conftest.F90:2:21: real*8 variable 1 Warning: Unused variable ‘variable’ declared at (1) [-Wunused-variable] Source: program main real*8 variable end ================================================================================ TEST checkFortranPreprocessor from config.compilersFortran(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/compilersFortran.py:73) TESTING: checkFortranPreprocessor from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:73) Determine if Fortran handles preprocessing properly Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.setCompilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-oluu3nld/config.setCompilers/conftest.F90 Successful compile: Source: program main #define dummy dummy #ifndef dummy fooey #endif end compilers: Fortran uses preprocessor ================================================================================ TEST checkFortranDefineCompilerOption from config.compilersFortran(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/compilersFortran.py:96) TESTING: checkFortranDefineCompilerOption from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:96) Check if -WF,-Dfoobar or -Dfoobar is the compiler option to define a macro Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.setCompilers -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 -DTesting /tmp/petsc-oluu3nld/config.setCompilers/conftest.F90 Successful compile: Source: program main #define dummy dummy #ifndef Testing fooey #endif end Defined make macro "FC_DEFINE_FLAG" to "-D" compilers: Fortran uses -D for defining macro ================================================================================ TEST checkFortran90 from config.compilersFortran(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/compilersFortran.py:146) TESTING: checkFortran90 from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:146) Determine whether the Fortran compiler handles F90 Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-oluu3nld/config.compilersFortran/conftest.o -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilersFortran -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-oluu3nld/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: stderr: /tmp/petsc-oluu3nld/config.compilersFortran/conftest.F90:3:43: REAL(KIND=SELECTED_REAL_KIND(10)) d 1 Warning: Unused variable ‘d’ declared at (1) [-Wunused-variable] Source: program main REAL(KIND=SELECTED_REAL_KIND(10)) d INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8) INTEGER (KIND=int) :: ierr ierr = 1 end Running Executable WITHOUT threads to time it out Executing: gfortran -o /tmp/petsc-oluu3nld/config.compilersFortran/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-oluu3nld/config.compilersFortran/conftest.o -lstdc++ -ldl Fortran compiler supports F90 ================================================================================ TEST checkFortran90FreeForm from config.compilersFortran(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/compilersFortran.py:162) TESTING: checkFortran90FreeForm from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:162) Determine whether the Fortran compiler handles F90FreeForm We also require that the compiler handles lines longer than 132 characters Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-oluu3nld/config.compilersFortran/conftest.o -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilersFortran -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-oluu3nld/config.compilersFortran/conftest.F90 Successful compile: Source: program main INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8); INTEGER (KIND=int) :: ierr; ierr = 1 end Running Executable WITHOUT threads to time it out Executing: gfortran -o /tmp/petsc-oluu3nld/config.compilersFortran/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-oluu3nld/config.compilersFortran/conftest.o -lstdc++ -ldl Defined "USING_F90FREEFORM" to "1" Fortran compiler supports F90FreeForm ================================================================================ TEST checkFortran2003 from config.compilersFortran(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/compilersFortran.py:176) TESTING: checkFortran2003 from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:176) Determine whether the Fortran compiler handles F2003 Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-oluu3nld/config.compilersFortran/conftest.o -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilersFortran -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-oluu3nld/config.compilersFortran/conftest.F90 Successful compile: Source: module Base_module type, public :: base_type integer :: A contains procedure, public :: Print => BasePrint end type base_type contains subroutine BasePrint(this) class(base_type) :: this end subroutine BasePrint end module Base_module program main use,intrinsic :: iso_c_binding Type(C_Ptr),Dimension(:),Pointer :: CArray character(kind=c_char),pointer :: nullc => null() character(kind=c_char,len=5),dimension(:),pointer::list1 allocate(list1(5)) CArray = (/(c_loc(list1(i)),i=1,5),c_loc(nullc)/) end Running Executable WITHOUT threads to time it out Executing: gfortran -o /tmp/petsc-oluu3nld/config.compilersFortran/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-oluu3nld/config.compilersFortran/conftest.o -lstdc++ -ldl Defined "USING_F2003" to "1" Fortran compiler supports F2003 ================================================================================ TEST checkFortran90Array from config.compilersFortran(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/compilersFortran.py:211) TESTING: checkFortran90Array from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:211) Check for F90 array interfaces Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.compilersFortran/conftest.o -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.compilersFortran/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void f90arraytest_(void* a1, void* a2,void* a3, void* i) { printf("arrays [%p %p %p]\n",a1,a2,a3); fflush(stdout); return; } void f90ptrtest_(void* a1, void* a2,void* a3, void* i, void* p1 ,void* p2, void* p3) { printf("arrays [%p %p %p]\n",a1,a2,a3); if ((p1 == p3) && (p1 != p2)) { printf("pointers match! [%p %p] [%p]\n",p1,p3,p2); fflush(stdout); } else { printf("pointers do not match! [%p %p] [%p]\n",p1,p3,p2); fflush(stdout); exit(111); } return; } Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-oluu3nld/config.compilersFortran/conftest.o -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilersFortran -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-oluu3nld/config.compilersFortran/conftest.F90 Successful compile: Source: program main Interface Subroutine f90ptrtest(p1,p2,p3,i) integer, pointer :: p1(:,:) integer, pointer :: p2(:,:) integer, pointer :: p3(:,:) integer i End Subroutine End Interface integer, pointer :: ptr1(:,:),ptr2(:,:) integer, target :: array(6:8,9:21) integer in in = 25 ptr1 => array ptr2 => array call f90arraytest(ptr1,ptr2,ptr1,in) call f90ptrtest(ptr1,ptr2,ptr1,in) end Running Executable WITHOUT threads to time it out Executing: gfortran -o /tmp/petsc-oluu3nld/config.compilersFortran/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-oluu3nld/config.compilersFortran/conftest.o /tmp/petsc-oluu3nld/config.compilersFortran/fooobj.o -lstdc++ -ldl Testing executable /tmp/petsc-oluu3nld/config.compilersFortran/conftest to see if it can be run Executing: /tmp/petsc-oluu3nld/config.compilersFortran/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-oluu3nld/config.compilersFortran/conftest stdout: arrays [0x7fffe90285a0 0x7fffe90285a0 0x7fffe90285a0] arrays [0x7fffe9028500 0x7fffe9028550 0x7fffe9028500] pointers do not match! [0x7f011cc7b780 (nil)] [0x7f011d19a700] ERROR while running executable: Could not execute "['/tmp/petsc-oluu3nld/config.compilersFortran/conftest']": arrays [0x7fffe90285a0 0x7fffe90285a0 0x7fffe90285a0] arrays [0x7fffe9028500 0x7fffe9028550 0x7fffe9028500] pointers do not match! [0x7f011cc7b780 (nil)] [0x7f011d19a700] compilers: F90 uses a single argument for array pointers ================================================================================ TEST checkFortran90AssumedType from config.compilersFortran(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/compilersFortran.py:298) TESTING: checkFortran90AssumedType from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:298) Running Executable WITHOUT threads to time it out Executing: gfortran -qversion ================================================================================ TEST checkFortranModuleInclude from config.compilersFortran(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/compilersFortran.py:303) TESTING: checkFortranModuleInclude from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:303) Figures out what flag is used to specify the include path for Fortran modules Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-oluu3nld/config.compilersFortran/conftest.o -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilersFortran -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-oluu3nld/config.compilersFortran/conftest.F90 Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-oluu3nld/config.compilersFortran/conftest.o -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.compilersFortran/confdir -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-oluu3nld/config.compilersFortran/conftest.F90 Successful compile: Source: program main use configtest write(*,*) testint end Running Executable WITHOUT threads to time it out Executing: gfortran -o /tmp/petsc-oluu3nld/config.compilersFortran/conftest -I/tmp/petsc-oluu3nld/config.compilersFortran/confdir -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-oluu3nld/config.compilersFortran/conftest.o /tmp/petsc-oluu3nld/config.compilersFortran/configtest.o -lstdc++ -ldl compilers: Fortran module include flag -I found ================================================================================ TEST checkFortranModuleOutput from config.compilersFortran(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/compilersFortran.py:369) TESTING: checkFortranModuleOutput from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:369) Figures out what flag is used to specify the include path for Fortran modules Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-oluu3nld/config.compilersFortran/conftest.o -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilersFortran -module /tmp/petsc-oluu3nld/config.compilersFortran/confdir -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-oluu3nld/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: exit code 1 stderr: gfortran: error: unrecognized command line option ‘-module’ Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -module compile failed Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-oluu3nld/config.compilersFortran/conftest.o -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilersFortran -module:/tmp/petsc-oluu3nld/config.compilersFortran/confdir -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-oluu3nld/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: exit code 1 stderr: gfortran: error: unrecognized command line option ‘-module:/tmp/petsc-oluu3nld/config.compilersFortran/confdir’ Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -module: compile failed Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-oluu3nld/config.compilersFortran/conftest.o -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilersFortran -fmod=/tmp/petsc-oluu3nld/config.compilersFortran/confdir -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-oluu3nld/config.compilersFortran/conftest.F90 Possible ERROR while running compiler: exit code 1 stderr: gfortran: error: unrecognized command line option ‘-fmod=/tmp/petsc-oluu3nld/config.compilersFortran/confdir’ Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -fmod= compile failed Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-oluu3nld/config.compilersFortran/conftest.o -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilersFortran -J/tmp/petsc-oluu3nld/config.compilersFortran/confdir -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-oluu3nld/config.compilersFortran/conftest.F90 Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -J found ================================================================================ TEST checkFortranTypeStar from config.compilersFortran(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/compilersFortran.py:135) TESTING: checkFortranTypeStar from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:135) Determine whether the Fortran compiler handles type(*) Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-oluu3nld/config.compilersFortran/conftest.o -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilersFortran -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-oluu3nld/config.compilersFortran/conftest.F90 Successful compile: Source: program main interface subroutine a(b) type(*) :: b(:) end subroutine end interface end Defined "HAVE_FORTRAN_TYPE_STAR" to "1" Fortran compiler supports type(*) ================================================================================ TEST checkFortranTypeInitialize from config.compilersFortran(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/compilersFortran.py:125) TESTING: checkFortranTypeInitialize from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:125) Determines if PETSc objects in Fortran are initialized by default (doesn't work with common blocks) Defined "FORTRAN_TYPE_INITIALIZE" to " = -2" Initializing Fortran objects ================================================================================ TEST configureFortranFlush from config.compilersFortran(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/compilersFortran.py:116) TESTING: configureFortranFlush from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:116) Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-oluu3nld/config.compilersFortran/conftest.o -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilersFortran -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-oluu3nld/config.compilersFortran/conftest.F90 Successful compile: Source: program main call flush(6) end Running Executable WITHOUT threads to time it out Executing: gfortran -o /tmp/petsc-oluu3nld/config.compilersFortran/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-oluu3nld/config.compilersFortran/conftest.o -lstdc++ -ldl Defined "HAVE_FORTRAN_FLUSH" to "1" ================================================================================ TEST checkDependencyGenerationFlag from config.compilersFortran(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/compilersFortran.py:414) TESTING: checkDependencyGenerationFlag from config.compilersFortran(config/BuildSystem/config/compilersFortran.py:414) Check if -MMD works for dependency generation, and add it if it does Trying FC compiler flag -MMD -MP Defined make macro "FC_DEPFLAGS" to "-MMD -MP" Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilersFortran -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 -MMD -MP /tmp/petsc-oluu3nld/config.setCompilers/conftest.F90 Successful compile: Source: program main end child config.compilersFortran 0.931154 ================================================================================ TEST checkStdC from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:105) TESTING: checkStdC from config.headers(config/BuildSystem/config/headers.py:105) Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.headers/conftest.o -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.headers/conftest.o -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #define ISLOWER(c) ('a' <= (c) && (c) <= 'z') #define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c)) #define XOR(e, f) (((e) && !(f)) || (!(e) && (f))) int main() { int i; for(i = 0; i < 256; i++) if (XOR(islower(i), ISLOWER(i)) || toupper(i) != TOUPPER(i)) exit(2); exit(0); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.headers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.headers/conftest.o -lstdc++ -ldl Testing executable /tmp/petsc-oluu3nld/config.headers/conftest to see if it can be run Executing: /tmp/petsc-oluu3nld/config.headers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-oluu3nld/config.headers/conftest ================================================================================ TEST checkStat from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:138) TESTING: checkStat from config.headers(config/BuildSystem/config/headers.py:138) Checks whether stat file-mode macros are broken, and defines STAT_MACROS_BROKEN if they are Preprocessing source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(S_ISBLK) && defined(S_IFDIR) # if S_ISBLK (S_IFDIR) You lose. # endif #endif #if defined(S_ISBLK) && defined(S_IFCHR) # if S_ISBLK (S_IFCHR) You lose. # endif #endif #if defined(S_ISLNK) && defined(S_IFREG) # if S_ISLNK (S_IFREG) You lose. # endif #endif #if defined(S_ISSOCK) && defined(S_IFREG) # if S_ISSOCK (S_IFREG) You lose. # endif #endif Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c ================================================================================ TEST checkSysWait from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:173) TESTING: checkSysWait from config.headers(config/BuildSystem/config/headers.py:173) Check for POSIX.1 compatible sys/wait.h, and defines HAVE_SYS_WAIT_H if found Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.headers/conftest.o -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifndef WEXITSTATUS #define WEXITSTATUS(stat_val) ((unsigned)(stat_val) >> 8) #endif #ifndef WIFEXITED #define WIFEXITED(stat_val) (((stat_val) & 255) == 0) #endif int main() { int s; wait (&s); s = WIFEXITED (s) ? WEXITSTATUS (s) : 1; ; return 0; } Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST checkTime from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:195) TESTING: checkTime from config.headers(config/BuildSystem/config/headers.py:195) Checks if you can safely include both and , and if so defines TIME_WITH_SYS_TIME Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_TIME_H" to "1" Checking for header: sys/time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_TIME_H" to "1" ================================================================================ TEST checkMath from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:201) TESTING: checkMath from config.headers(config/BuildSystem/config/headers.py:201) Checks for the math headers and defines Checking for header: math.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.headers/conftest.o -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double pi = M_PI; if (pi); ; return 0; } Found math #defines, like M_PI ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SETJMP_H" to "1" ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-oluu3nld/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-oluu3nld/config.headers/conftest.c" # 1 "/tmp/petsc-oluu3nld/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-oluu3nld/config.headers/conftest.c" 2 # 1 "/tmp/petsc-oluu3nld/config.headers/conffix.h" 1 # 3 "/tmp/petsc-oluu3nld/config.headers/conftest.c" 2 stderr: /tmp/petsc-oluu3nld/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-oluu3nld/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directory compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-oluu3nld/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directorycompilation terminated.: ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_FCNTL_H" to "1" ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-oluu3nld/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-oluu3nld/config.headers/conftest.c" # 1 "/tmp/petsc-oluu3nld/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-oluu3nld/config.headers/conftest.c" 2 # 1 "/tmp/petsc-oluu3nld/config.headers/conffix.h" 1 # 3 "/tmp/petsc-oluu3nld/config.headers/conftest.c" 2 stderr: /tmp/petsc-oluu3nld/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-oluu3nld/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directory compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-oluu3nld/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directorycompilation terminated.: ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_MALLOC_H" to "1" ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_PWD_H" to "1" ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_STRINGS_H" to "1" ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_UNISTD_H" to "1" ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_SYSINFO_H" to "1" ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-oluu3nld/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-oluu3nld/config.headers/conftest.c" # 1 "/tmp/petsc-oluu3nld/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-oluu3nld/config.headers/conftest.c" 2 # 1 "/tmp/petsc-oluu3nld/config.headers/conffix.h" 1 # 3 "/tmp/petsc-oluu3nld/config.headers/conftest.c" 2 stderr: /tmp/petsc-oluu3nld/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-oluu3nld/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directory compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-oluu3nld/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directorycompilation terminated.: ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_PARAM_H" to "1" ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_PROCFS_H" to "1" ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_RESOURCE_H" to "1" ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-oluu3nld/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-oluu3nld/config.headers/conftest.c" # 1 "/tmp/petsc-oluu3nld/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-oluu3nld/config.headers/conftest.c" 2 # 1 "/tmp/petsc-oluu3nld/config.headers/conffix.h" 1 # 3 "/tmp/petsc-oluu3nld/config.headers/conftest.c" 2 stderr: /tmp/petsc-oluu3nld/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-oluu3nld/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-oluu3nld/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directorycompilation terminated.: ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_TIMES_H" to "1" ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_UTSNAME_H" to "1" ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_SOCKET_H" to "1" ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_NETINET_IN_H" to "1" ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_NETDB_H" to "1" ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: direct.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-oluu3nld/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-oluu3nld/config.headers/conftest.c" # 1 "/tmp/petsc-oluu3nld/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-oluu3nld/config.headers/conftest.c" 2 # 1 "/tmp/petsc-oluu3nld/config.headers/conffix.h" 1 # 3 "/tmp/petsc-oluu3nld/config.headers/conftest.c" 2 stderr: /tmp/petsc-oluu3nld/config.headers/conftest.c:3:20: fatal error: direct.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-oluu3nld/config.headers/conftest.c:3:20: fatal error: direct.h: No such file or directory compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-oluu3nld/config.headers/conftest.c:3:20: fatal error: direct.h: No such file or directorycompilation terminated.: ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_TIME_H" to "1" ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-oluu3nld/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-oluu3nld/config.headers/conftest.c" # 1 "/tmp/petsc-oluu3nld/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-oluu3nld/config.headers/conftest.c" 2 # 1 "/tmp/petsc-oluu3nld/config.headers/conffix.h" 1 # 3 "/tmp/petsc-oluu3nld/config.headers/conftest.c" 2 stderr: /tmp/petsc-oluu3nld/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-oluu3nld/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directory compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-oluu3nld/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directorycompilation terminated.: ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_TYPES_H" to "1" ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-oluu3nld/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-oluu3nld/config.headers/conftest.c" # 1 "/tmp/petsc-oluu3nld/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-oluu3nld/config.headers/conftest.c" 2 # 1 "/tmp/petsc-oluu3nld/config.headers/conffix.h" 1 # 3 "/tmp/petsc-oluu3nld/config.headers/conftest.c" 2 stderr: /tmp/petsc-oluu3nld/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-oluu3nld/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directory compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-oluu3nld/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directorycompilation terminated.: ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-oluu3nld/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-oluu3nld/config.headers/conftest.c" # 1 "/tmp/petsc-oluu3nld/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-oluu3nld/config.headers/conftest.c" 2 # 1 "/tmp/petsc-oluu3nld/config.headers/conffix.h" 1 # 3 "/tmp/petsc-oluu3nld/config.headers/conftest.c" 2 stderr: /tmp/petsc-oluu3nld/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-oluu3nld/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directory compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-oluu3nld/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directorycompilation terminated.: ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_STDINT_H" to "1" ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_PTHREAD_H" to "1" ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: inttypes.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_INTTYPES_H" to "1" ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: immintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_IMMINTRIN_H" to "1" ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: zmmintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-oluu3nld/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-oluu3nld/config.headers/conftest.c" # 1 "/tmp/petsc-oluu3nld/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-oluu3nld/config.headers/conftest.c" 2 # 1 "/tmp/petsc-oluu3nld/config.headers/conffix.h" 1 # 3 "/tmp/petsc-oluu3nld/config.headers/conftest.c" 2 stderr: /tmp/petsc-oluu3nld/config.headers/conftest.c:3:23: fatal error: zmmintrin.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-oluu3nld/config.headers/conftest.c:3:23: fatal error: zmmintrin.h: No such file or directory compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-oluu3nld/config.headers/conftest.c:3:23: fatal error: zmmintrin.h: No such file or directorycompilation terminated.: ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SETJMP_H" to "1" ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-oluu3nld/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-oluu3nld/config.headers/conftest.c" # 1 "/tmp/petsc-oluu3nld/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-oluu3nld/config.headers/conftest.c" 2 # 1 "/tmp/petsc-oluu3nld/config.headers/conffix.h" 1 # 3 "/tmp/petsc-oluu3nld/config.headers/conftest.c" 2 stderr: /tmp/petsc-oluu3nld/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-oluu3nld/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directory compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-oluu3nld/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directorycompilation terminated.: ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_FCNTL_H" to "1" ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-oluu3nld/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-oluu3nld/config.headers/conftest.c" # 1 "/tmp/petsc-oluu3nld/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-oluu3nld/config.headers/conftest.c" 2 # 1 "/tmp/petsc-oluu3nld/config.headers/conffix.h" 1 # 3 "/tmp/petsc-oluu3nld/config.headers/conftest.c" 2 stderr: /tmp/petsc-oluu3nld/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-oluu3nld/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directory compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-oluu3nld/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directorycompilation terminated.: ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_MALLOC_H" to "1" ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_PWD_H" to "1" ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_STRINGS_H" to "1" ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_UNISTD_H" to "1" ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_SYSINFO_H" to "1" ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-oluu3nld/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-oluu3nld/config.headers/conftest.c" # 1 "/tmp/petsc-oluu3nld/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-oluu3nld/config.headers/conftest.c" 2 # 1 "/tmp/petsc-oluu3nld/config.headers/conffix.h" 1 # 3 "/tmp/petsc-oluu3nld/config.headers/conftest.c" 2 stderr: /tmp/petsc-oluu3nld/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-oluu3nld/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directory compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-oluu3nld/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directorycompilation terminated.: ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_PARAM_H" to "1" ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_PROCFS_H" to "1" ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_RESOURCE_H" to "1" ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-oluu3nld/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-oluu3nld/config.headers/conftest.c" # 1 "/tmp/petsc-oluu3nld/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-oluu3nld/config.headers/conftest.c" 2 # 1 "/tmp/petsc-oluu3nld/config.headers/conffix.h" 1 # 3 "/tmp/petsc-oluu3nld/config.headers/conftest.c" 2 stderr: /tmp/petsc-oluu3nld/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-oluu3nld/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-oluu3nld/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directorycompilation terminated.: ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_TIMES_H" to "1" ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_UTSNAME_H" to "1" ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_SOCKET_H" to "1" ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_NETINET_IN_H" to "1" ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_NETDB_H" to "1" ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: direct.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-oluu3nld/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-oluu3nld/config.headers/conftest.c" # 1 "/tmp/petsc-oluu3nld/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-oluu3nld/config.headers/conftest.c" 2 # 1 "/tmp/petsc-oluu3nld/config.headers/conffix.h" 1 # 3 "/tmp/petsc-oluu3nld/config.headers/conftest.c" 2 stderr: /tmp/petsc-oluu3nld/config.headers/conftest.c:3:20: fatal error: direct.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-oluu3nld/config.headers/conftest.c:3:20: fatal error: direct.h: No such file or directory compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-oluu3nld/config.headers/conftest.c:3:20: fatal error: direct.h: No such file or directorycompilation terminated.: ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_TIME_H" to "1" ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-oluu3nld/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-oluu3nld/config.headers/conftest.c" # 1 "/tmp/petsc-oluu3nld/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-oluu3nld/config.headers/conftest.c" 2 # 1 "/tmp/petsc-oluu3nld/config.headers/conffix.h" 1 # 3 "/tmp/petsc-oluu3nld/config.headers/conftest.c" 2 stderr: /tmp/petsc-oluu3nld/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-oluu3nld/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directory compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-oluu3nld/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directorycompilation terminated.: ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_TYPES_H" to "1" ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-oluu3nld/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-oluu3nld/config.headers/conftest.c" # 1 "/tmp/petsc-oluu3nld/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-oluu3nld/config.headers/conftest.c" 2 # 1 "/tmp/petsc-oluu3nld/config.headers/conffix.h" 1 # 3 "/tmp/petsc-oluu3nld/config.headers/conftest.c" 2 stderr: /tmp/petsc-oluu3nld/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-oluu3nld/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directory compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-oluu3nld/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directorycompilation terminated.: ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-oluu3nld/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-oluu3nld/config.headers/conftest.c" # 1 "/tmp/petsc-oluu3nld/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-oluu3nld/config.headers/conftest.c" 2 # 1 "/tmp/petsc-oluu3nld/config.headers/conffix.h" 1 # 3 "/tmp/petsc-oluu3nld/config.headers/conftest.c" 2 stderr: /tmp/petsc-oluu3nld/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-oluu3nld/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directory compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-oluu3nld/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directorycompilation terminated.: ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_STDINT_H" to "1" ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_PTHREAD_H" to "1" ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: inttypes.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_INTTYPES_H" to "1" ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: immintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_IMMINTRIN_H" to "1" ================================================================================ TEST check from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: zmmintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-oluu3nld/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-oluu3nld/config.headers/conftest.c" # 1 "/tmp/petsc-oluu3nld/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-oluu3nld/config.headers/conftest.c" 2 # 1 "/tmp/petsc-oluu3nld/config.headers/conffix.h" 1 # 3 "/tmp/petsc-oluu3nld/config.headers/conftest.c" 2 stderr: /tmp/petsc-oluu3nld/config.headers/conftest.c:3:23: fatal error: zmmintrin.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-oluu3nld/config.headers/conftest.c:3:23: fatal error: zmmintrin.h: No such file or directory compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-oluu3nld/config.headers/conftest.c:3:23: fatal error: zmmintrin.h: No such file or directorycompilation terminated.: ================================================================================ TEST checkRecursiveMacros from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:216) TESTING: checkRecursiveMacros from config.headers(config/BuildSystem/config/headers.py:216) Checks that the preprocessor allows recursive macros, and if not defines HAVE_BROKEN_RECURSIVE_MACRO Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.headers/conftest.o -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void a(int i, int j) {} #define a(b) a(b,__LINE__) int main() { a(0); ; return 0; } child config.headers 1.764385 ================================================================================ TEST configureCacheDetails from config.utilities.cacheDetails(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/utilities/cacheDetails.py:78) TESTING: configureCacheDetails from config.utilities.cacheDetails(config/BuildSystem/config/utilities/cacheDetails.py:78) Try to determine the size and associativity of the cache. All intermediate test results are stored in /tmp/petsc-oluu3nld/config.utilities.cacheDetails Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.utilities.cacheDetails/conftest.o -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.utilities.cacheDetails/conftest.o -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_LINESIZE()); fclose(output);; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.utilities.cacheDetails/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.utilities.cacheDetails/conftest.o -lstdc++ -ldl Testing executable /tmp/petsc-oluu3nld/config.utilities.cacheDetails/conftest to see if it can be run Executing: /tmp/petsc-oluu3nld/config.utilities.cacheDetails/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-oluu3nld/config.utilities.cacheDetails/conftest Defined "LEVEL1_DCACHE_LINESIZE" to "64" child config.utilities.cacheDetails 0.140728 ================================================================================ TEST check_struct_sigaction from config.types(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/types.py:43) TESTING: check_struct_sigaction from config.types(config/BuildSystem/config/types.py:43) Checks if "struct sigaction" exists in signal.h. This check is for C89 check. Checking for type: struct sigaction All intermediate test results are stored in /tmp/petsc-oluu3nld/config.types Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.types/conftest.o -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-oluu3nld/config.types/conftest.c: In function ‘main’: /tmp/petsc-oluu3nld/config.types/conftest.c:11:18: warning: unused variable ‘a’ [-Wunused-variable] struct sigaction a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { struct sigaction a;; return 0; } struct sigaction found Defined "HAVE_STRUCT_SIGACTION" to "1" ================================================================================ TEST check__int64 from config.types(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/types.py:49) TESTING: check__int64 from config.types(config/BuildSystem/config/types.py:49) Checks if __int64 exists. This is primarily for windows. Checking for type: __int64 Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.types/conftest.o -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.types/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-oluu3nld/config.types/conftest.c: In function ‘main’: /tmp/petsc-oluu3nld/config.types/conftest.c:11:1: error: unknown type name ‘__int64’ __int64 a;; ^ /tmp/petsc-oluu3nld/config.types/conftest.c:11:9: warning: unused variable ‘a’ [-Wunused-variable] __int64 a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { __int64 a;; return 0; } __int64 found ================================================================================ TEST checkSizeTypes from config.types(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/types.py:55) TESTING: checkSizeTypes from config.types(config/BuildSystem/config/types.py:55) Checks for types associated with sizes, such as size_t. Checking for type: size_t Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.types/conftest.o -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-oluu3nld/config.types/conftest.c: In function ‘main’: /tmp/petsc-oluu3nld/config.types/conftest.c:11:8: warning: unused variable ‘a’ [-Wunused-variable] size_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { size_t a;; return 0; } size_t found ================================================================================ TEST checkFileTypes from config.types(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/types.py:65) TESTING: checkFileTypes from config.types(config/BuildSystem/config/types.py:65) Checks for types associated with files, such as mode_t, off_t, etc. Checking for type: mode_t Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.types/conftest.o -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-oluu3nld/config.types/conftest.c: In function ‘main’: /tmp/petsc-oluu3nld/config.types/conftest.c:11:8: warning: unused variable ‘a’ [-Wunused-variable] mode_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { mode_t a;; return 0; } mode_t found Checking for type: off_t Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.types/conftest.o -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-oluu3nld/config.types/conftest.c: In function ‘main’: /tmp/petsc-oluu3nld/config.types/conftest.c:11:7: warning: unused variable ‘a’ [-Wunused-variable] off_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { off_t a;; return 0; } off_t found ================================================================================ TEST checkIntegerTypes from config.types(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/types.py:60) TESTING: checkIntegerTypes from config.types(config/BuildSystem/config/types.py:60) Checks for types associated with integers, such as int32_t. Checking for type: int32_t Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.types/conftest.o -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-oluu3nld/config.types/conftest.c: In function ‘main’: /tmp/petsc-oluu3nld/config.types/conftest.c:11:9: warning: unused variable ‘a’ [-Wunused-variable] int32_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { int32_t a;; return 0; } int32_t found ================================================================================ TEST checkPID from config.types(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/types.py:71) TESTING: checkPID from config.types(config/BuildSystem/config/types.py:71) Checks for pid_t, and defines it if necessary Checking for type: pid_t Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.types/conftest.o -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-oluu3nld/config.types/conftest.c: In function ‘main’: /tmp/petsc-oluu3nld/config.types/conftest.c:11:7: warning: unused variable ‘a’ [-Wunused-variable] pid_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { pid_t a;; return 0; } pid_t found ================================================================================ TEST checkUID from config.types(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/types.py:75) TESTING: checkUID from config.types(config/BuildSystem/config/types.py:75) Checks for uid_t and gid_t, and defines them if necessary Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.types /tmp/petsc-oluu3nld/config.types/conftest.c ================================================================================ TEST checkC99Complex from config.types(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/types.py:82) TESTING: checkC99Complex from config.types(config/BuildSystem/config/types.py:82) Check for complex numbers in in C99 std Note that since PETSc source code uses _Complex we test specifically for that, not complex Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.types/conftest.o -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-oluu3nld/config.types/conftest.c: In function ‘main’: /tmp/petsc-oluu3nld/config.types/conftest.c:6:17: warning: variable ‘x’ set but not used [-Wunused-but-set-variable] double _Complex x; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.types/conftest.o -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-oluu3nld/config.types/conftest.c: In function ‘main’: /tmp/petsc-oluu3nld/config.types/conftest.c:6:17: warning: variable ‘x’ set but not used [-Wunused-but-set-variable] double _Complex x; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.types/conftest.o -lstdc++ -ldl Defined "HAVE_C99_COMPLEX" to "1" ================================================================================ TEST checkCxxComplex from config.types(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/types.py:93) TESTING: checkCxxComplex from config.types(config/BuildSystem/config/types.py:93) Check for complex numbers in namespace std Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-oluu3nld/config.types/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -fPIC -std=gnu++11 /tmp/petsc-oluu3nld/config.types/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { std::complex x; ; return 0; } Running Executable WITHOUT threads to time it out Executing: g++ -o /tmp/petsc-oluu3nld/config.types/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.types/conftest.o -lstdc++ -ldl Defined "HAVE_CXX_COMPLEX" to "1" ================================================================================ TEST checkConst from config.types(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/types.py:104) TESTING: checkConst from config.types(config/BuildSystem/config/types.py:104) Checks for working const, and if not found defines it to empty string Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.types/conftest.o -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-oluu3nld/config.types/conftest.c: In function ‘main’: /tmp/petsc-oluu3nld/config.types/conftest.c:30:9: warning: ‘t’ is used uninitialized in this function [-Wuninitialized] *t++ = 0; ^ /tmp/petsc-oluu3nld/config.types/conftest.c:46:25: warning: ‘b’ is used uninitialized in this function [-Wuninitialized] struct s *b; b->j = 5; ^ Source: #include "confdefs.h" #include "conffix.h" int main() { /* Ultrix mips cc rejects this. */ typedef int charset[2]; const charset x; /* SunOS 4.1.1 cc rejects this. */ char const *const *ccp; char **p; /* NEC SVR4.0.2 mips cc rejects this. */ struct point {int x, y;}; static struct point const zero = {0,0}; /* AIX XL C 1.02.0.0 rejects this. It does not let you subtract one const X* pointer from another in an arm of an if-expression whose if-part is not a constant expression */ const char *g = "string"; ccp = &g + (g ? g-g : 0); /* HPUX 7.0 cc rejects these. */ ++ccp; p = (char**) ccp; ccp = (char const *const *) p; /* This section avoids unused variable warnings */ if (zero.x); if (x[0]); { /* SCO 3.2v4 cc rejects this. */ char *t; char const *s = 0 ? (char *) 0 : (char const *) 0; *t++ = 0; if (*s); } { /* Someone thinks the Sun supposedly-ANSI compiler will reject this. */ int x[] = {25, 17}; const int *foo = &x[0]; ++foo; } { /* Sun SC1.0 ANSI compiler rejects this -- but not the above. */ typedef const int *iptr; iptr p = 0; ++p; } { /* AIX XL C 1.02.0.0 rejects this saying "k.c", line 2.27: 1506-025 (S) Operand must be a modifiable lvalue. */ struct s { int j; const int *ap[3]; }; struct s *b; b->j = 5; } { /* ULTRIX-32 V3.1 (Rev 9) vcc rejects this */ const int foo = 10; /* Get rid of unused variable warning */ if (foo); } ; return 0; } ================================================================================ TEST checkSizeof from config.types(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/types.py:160) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:160) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.types/conftest.o -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(long)==8)*2-1]; Defined "SIZEOF_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/types.py:160) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:160) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: void * Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.types/conftest.o -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(void *)==8)*2-1]; Defined "SIZEOF_VOID_P" to "8" ================================================================================ TEST checkSizeof from config.types(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/types.py:160) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:160) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: size_t Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.types/conftest.o -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(size_t)==8)*2-1]; Defined "SIZEOF_SIZE_T" to "8" ================================================================================ TEST checkSizeof from config.types(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/types.py:160) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:160) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: int Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.types/conftest.o -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(int)==4)*2-1]; Defined "SIZEOF_INT" to "4" ================================================================================ TEST checkSizeof from config.types(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/types.py:160) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:160) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long long Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.types/conftest.o -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(long long)==8)*2-1]; Defined "SIZEOF_LONG_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/types.py:160) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:160) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: enum Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.types/conftest.o -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(enum{ENUM_DUMMY})==4)*2-1]; Defined "SIZEOF_ENUM" to "4" ================================================================================ TEST checkSizeof from config.types(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/types.py:160) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:160) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: short Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.types/conftest.o -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(short)==2)*2-1]; Defined "SIZEOF_SHORT" to "2" ================================================================================ TEST checkVisibility from config.types(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/types.py:194) TESTING: checkVisibility from config.types(config/BuildSystem/config/types.py:194) Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.types/conftest.o -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { __attribute__((visibility ("default"))) int foo(void);; return 0; } Defined "USE_VISIBILITY_C" to "1" Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-oluu3nld/config.types/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -fPIC -std=gnu++11 /tmp/petsc-oluu3nld/config.types/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { __attribute__((visibility ("default"))) int foo(void);; return 0; } Defined "USE_VISIBILITY_CXX" to "1" child config.types 1.100471 ================================================================================ TEST configureMemAlign from PETSc.options.memAlign(/home/dsu/Soft/PETSc/petsc-3.13.2/config/PETSc/options/memAlign.py:29) TESTING: configureMemAlign from PETSc.options.memAlign(config/PETSc/options/memAlign.py:29) Choose alignment Defined "MEMALIGN" to "16" Memory alignment is 16 child PETSc.options.memAlign 0.001338 ================================================================================ TEST check from config.libraries(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.libraries/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.o -lfpe -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lfpe collect2: error: ld returned 1 exit status ================================================================================ TEST check from config.libraries(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.libraries/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.o -lsocket -lnsl -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lsocket collect2: error: ld returned 1 exit status ================================================================================ TEST check from config.libraries(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.libraries/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.o -lfpe -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lfpe collect2: error: ld returned 1 exit status ================================================================================ TEST check from config.libraries(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.libraries/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.o -lsocket -lnsl -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lsocket collect2: error: ld returned 1 exit status ================================================================================ TEST checkMath from config.libraries(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/libraries.py:264) TESTING: checkMath from config.libraries(config/BuildSystem/config/libraries.py:264) Check for sin() in libm, the math library Checking for functions [sin floor log10 pow] in library [''] [] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.libraries/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-oluu3nld/config.libraries/conftest.c: In function ‘_check_sin’: /tmp/petsc-oluu3nld/config.libraries/conftest.c:6:40: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] static void _check_sin() { double x,y; scanf("%lf",&x); y = sin(x); printf("%f",y); ^ /tmp/petsc-oluu3nld/config.libraries/conftest.c: In function ‘_check_floor’: /tmp/petsc-oluu3nld/config.libraries/conftest.c:10:42: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] static void _check_floor() { double x,y; scanf("%lf",&x); y = floor(x); printf("%f",y); ^ /tmp/petsc-oluu3nld/config.libraries/conftest.c: In function ‘_check_log10’: /tmp/petsc-oluu3nld/config.libraries/conftest.c:14:42: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] static void _check_log10() { double x,y; scanf("%lf",&x); y = log10(x); printf("%f",y); ^ /tmp/petsc-oluu3nld/config.libraries/conftest.c: In function ‘_check_pow’: /tmp/petsc-oluu3nld/config.libraries/conftest.c:18:40: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] static void _check_pow() { double x,y; scanf("%lf",&x); y = pow(x,x); printf("%f",y); ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include double sin(double); static void _check_sin() { double x,y; scanf("%lf",&x); y = sin(x); printf("%f",y); ; } #include double floor(double); static void _check_floor() { double x,y; scanf("%lf",&x); y = floor(x); printf("%f",y); ; } #include double log10(double); static void _check_log10() { double x,y; scanf("%lf",&x); y = log10(x); printf("%f",y); ; } #include double pow(double, double); static void _check_pow() { double x,y; scanf("%lf",&x); y = pow(x,x); printf("%f",y); ; } int main() { _check_sin(); _check_floor(); _check_log10(); _check_pow();; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-oluu3nld/config.libraries/conftest.o: In function `main': conftest.c:(.text.startup+0x22): undefined reference to `sin' conftest.c:(.text.startup+0x54): undefined reference to `floor' conftest.c:(.text.startup+0x86): undefined reference to `log10' conftest.c:(.text.startup+0xbc): undefined reference to `pow' collect2: error: ld returned 1 exit status Checking for functions [sin floor log10 pow] in library ['m'] [] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.libraries/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-oluu3nld/config.libraries/conftest.c: In function ‘_check_sin’: /tmp/petsc-oluu3nld/config.libraries/conftest.c:6:40: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] static void _check_sin() { double x,y; scanf("%lf",&x); y = sin(x); printf("%f",y); ^ /tmp/petsc-oluu3nld/config.libraries/conftest.c: In function ‘_check_floor’: /tmp/petsc-oluu3nld/config.libraries/conftest.c:10:42: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] static void _check_floor() { double x,y; scanf("%lf",&x); y = floor(x); printf("%f",y); ^ /tmp/petsc-oluu3nld/config.libraries/conftest.c: In function ‘_check_log10’: /tmp/petsc-oluu3nld/config.libraries/conftest.c:14:42: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] static void _check_log10() { double x,y; scanf("%lf",&x); y = log10(x); printf("%f",y); ^ /tmp/petsc-oluu3nld/config.libraries/conftest.c: In function ‘_check_pow’: /tmp/petsc-oluu3nld/config.libraries/conftest.c:18:40: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] static void _check_pow() { double x,y; scanf("%lf",&x); y = pow(x,x); printf("%f",y); ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include double sin(double); static void _check_sin() { double x,y; scanf("%lf",&x); y = sin(x); printf("%f",y); ; } #include double floor(double); static void _check_floor() { double x,y; scanf("%lf",&x); y = floor(x); printf("%f",y); ; } #include double log10(double); static void _check_log10() { double x,y; scanf("%lf",&x); y = log10(x); printf("%f",y); ; } #include double pow(double, double); static void _check_pow() { double x,y; scanf("%lf",&x); y = pow(x,x); printf("%f",y); ; } int main() { _check_sin(); _check_floor(); _check_log10(); _check_pow();; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.o -lm -lstdc++ -ldl Defined "HAVE_LIBM" to "1" CheckMath: using math library ['libm.a'] ================================================================================ TEST checkMathErf from config.libraries(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/libraries.py:283) TESTING: checkMathErf from config.libraries(config/BuildSystem/config/libraries.py:283) Check for erf() in libm, the math library Checking for functions [erf] in library ['libm.a'] [] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.libraries/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-oluu3nld/config.libraries/conftest.c: In function ‘_check_erf’: /tmp/petsc-oluu3nld/config.libraries/conftest.c:5:74: warning: variable ‘y’ set but not used [-Wunused-but-set-variable] static void _check_erf() { double (*checkErf)(double) = erf;double x = 0,y; y = (*checkErf)(x); } ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_erf() { double (*checkErf)(double) = erf;double x = 0,y; y = (*checkErf)(x); } int main() { _check_erf();; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.o -lm -lstdc++ -ldl Defined "HAVE_LIBM" to "1" erf() found Defined "HAVE_ERF" to "1" ================================================================================ TEST checkMathTgamma from config.libraries(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/libraries.py:292) TESTING: checkMathTgamma from config.libraries(config/BuildSystem/config/libraries.py:292) Check for tgamma() in libm, the math library Checking for functions [tgamma] in library ['libm.a'] [] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.libraries/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-oluu3nld/config.libraries/conftest.c: In function ‘_check_tgamma’: /tmp/petsc-oluu3nld/config.libraries/conftest.c:5:83: warning: variable ‘y’ set but not used [-Wunused-but-set-variable] static void _check_tgamma() { double (*checkTgamma)(double) = tgamma;double x = 0,y; y = (*checkTgamma)(x); } ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_tgamma() { double (*checkTgamma)(double) = tgamma;double x = 0,y; y = (*checkTgamma)(x); } int main() { _check_tgamma();; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.o -lm -lstdc++ -ldl Defined "HAVE_LIBM" to "1" tgamma() found Defined "HAVE_TGAMMA" to "1" ================================================================================ TEST checkMathLgamma from config.libraries(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/libraries.py:301) TESTING: checkMathLgamma from config.libraries(config/BuildSystem/config/libraries.py:301) Check for lgamma() in libm, the math library Checking for functions [lgamma] in library ['libm.a'] [] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.libraries/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include #include static void _check_lgamma() { double (*checkLgamma)(double) = lgamma;double x = 1,y; y = (*checkLgamma)(x);if (y != 0.) abort(); } int main() { _check_lgamma();; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.o -lm -lstdc++ -ldl Defined "HAVE_LIBM" to "1" lgamma() found Defined "HAVE_LGAMMA" to "1" ================================================================================ TEST checkMathFenv from config.libraries(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/libraries.py:314) TESTING: checkMathFenv from config.libraries(config/BuildSystem/config/libraries.py:314) Checks if can be used with FE_DFL_ENV Checking for functions [fesetenv] in library ['libm.a'] [] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.libraries/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_fesetenv() { fesetenv(FE_DFL_ENV);; } int main() { _check_fesetenv();; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.o -lm -lstdc++ -ldl Defined "HAVE_LIBM" to "1" Defined "HAVE_FENV_H" to "1" ================================================================================ TEST checkMathLog2 from config.libraries(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/libraries.py:322) TESTING: checkMathLog2 from config.libraries(config/BuildSystem/config/libraries.py:322) Check for log2() in libm, the math library Checking for functions [log2] in library ['libm.a'] [] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.libraries/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-oluu3nld/config.libraries/conftest.c: In function ‘_check_log2’: /tmp/petsc-oluu3nld/config.libraries/conftest.c:5:81: warning: unused variable ‘y’ [-Wunused-variable] static void _check_log2() { double (*checkLog2)(double) = log2; double x = 2.5, y = (*checkLog2)(x); } ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_log2() { double (*checkLog2)(double) = log2; double x = 2.5, y = (*checkLog2)(x); } int main() { _check_log2();; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.o -lm -lstdc++ -ldl Defined "HAVE_LIBM" to "1" log2() found Defined "HAVE_LOG2" to "1" ================================================================================ TEST checkRealtime from config.libraries(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/libraries.py:331) TESTING: checkRealtime from config.libraries(config/BuildSystem/config/libraries.py:331) Check for presence of clock_gettime() in realtime library (POSIX Realtime extensions) Checking for functions [clock_gettime] in library [''] [] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.libraries/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_clock_gettime() { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; } int main() { _check_clock_gettime();; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.o -lstdc++ -ldl realtime functions are linked in by default ================================================================================ TEST checkDynamic from config.libraries(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/libraries.py:347) TESTING: checkDynamic from config.libraries(config/BuildSystem/config/libraries.py:347) Check for the header and libraries necessary for dynamic library manipulation Checking for functions [dlopen] in library ['dl'] [] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.libraries/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } int main() { _check_dlopen();; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.o -ldl -lstdc++ -ldl Defined "HAVE_LIBDL" to "1" Checking for header: dlfcn.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_DLFCN_H" to "1" child config.libraries 1.105426 ================================================================================ TEST configureLibraryOptions from PETSc.options.libraryOptions(/home/dsu/Soft/PETSc/petsc-3.13.2/config/PETSc/options/libraryOptions.py:37) TESTING: configureLibraryOptions from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:37) Sets PETSC_USE_DEBUG, PETSC_USE_INFO, PETSC_USE_LOG, PETSC_USE_CTABLE, PETSC_USE_FORTRAN_KERNELS, and PETSC_USE_AVX512_KERNELS Defined "USE_LOG" to "1" Running Executable WITHOUT threads to time it out Executing: gcc -qversion Defined "USE_MALLOC_COALESCED" to "1" Defined "USE_INFO" to "1" Defined "USE_CTABLE" to "1" Defined "USE_BACKWARD_LOOP" to "1" **********Checking if running on BGL/IBM detected Checking for functions [bgl_perfctr_void] in library [''] [] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.libraries/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char bgl_perfctr_void(); static void _check_bgl_perfctr_void() { bgl_perfctr_void(); } int main() { _check_bgl_perfctr_void();; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-oluu3nld/config.libraries/conftest.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `bgl_perfctr_void' collect2: error: ld returned 1 exit status Checking for functions [ADIOI_BGL_Open] in library [''] [] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.libraries/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ADIOI_BGL_Open(); static void _check_ADIOI_BGL_Open() { ADIOI_BGL_Open(); } int main() { _check_ADIOI_BGL_Open();; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-oluu3nld/config.libraries/conftest.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `ADIOI_BGL_Open' collect2: error: ld returned 1 exit status *********BGL/IBM test failure Defined "USE_AVX512_KERNELS" to "1" Defined "Alignx(a,b)" to " " ================================================================================ TEST configureISColorValueType from PETSc.options.libraryOptions(/home/dsu/Soft/PETSc/petsc-3.13.2/config/PETSc/options/libraryOptions.py:95) TESTING: configureISColorValueType from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:95) Sets PETSC_IS_COLOR_VALUE_TYPE, MPIU_COLORING_VALUE, IS_COLORING_MAX required by ISColor Defined "MPIU_COLORING_VALUE" to "MPI_UNSIGNED_SHORT" Defined "IS_COLORING_MAX" to "USHRT_MAX" Defined "IS_COLOR_VALUE_TYPE" to "short" Defined "IS_COLOR_VALUE_TYPE_F" to "integer2" child PETSc.options.libraryOptions 0.167773 child config.atomics 0.000015 ================================================================================ TEST checkSysinfo from config.functions(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/functions.py:106) TESTING: checkSysinfo from config.functions(config/BuildSystem/config/functions.py:106) Check whether sysinfo takes three arguments, and if it does define HAVE_SYSINFO_3ARG Checking for functions [sysinfo] All intermediate test results are stored in /tmp/petsc-oluu3nld/config.functions Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.functions/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysinfo(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sysinfo) || defined (__stub___sysinfo) sysinfo_will_always_fail_with_ENOSYS(); #else sysinfo(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_SYSINFO" to "1" Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.functions/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.functions/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-oluu3nld/config.functions/conftest.c:9:4: error: #error "Cannot check sysinfo without special headers" # error "Cannot check sysinfo without special headers" ^ /tmp/petsc-oluu3nld/config.functions/conftest.c: In function ‘main’: /tmp/petsc-oluu3nld/config.functions/conftest.c:13:30: warning: implicit declaration of function ‘sysinfo’ [-Wimplicit-function-declaration] char buf[10]; long count=10; sysinfo(1, buf, count); ^ Source: #include "confdefs.h" #include "conffix.h" #ifdef HAVE_SYS_SYSINFO_H # include #elif defined(HAVE_SYS_SYSTEMINFO_H) # include #else # error "Cannot check sysinfo without special headers" #endif int main() { char buf[10]; long count=10; sysinfo(1, buf, count); ; return 0; } Compile failed inside link ================================================================================ TEST checkVPrintf from config.functions(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/functions.py:125) TESTING: checkVPrintf from config.functions(config/BuildSystem/config/functions.py:125) Checks whether vprintf requires a char * last argument, and if it does defines HAVE_VPRINTF_CHAR Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.functions/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vprintf( "%d", Argp ); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.functions/conftest.o -lstdc++ -ldl ================================================================================ TEST checkVFPrintf from config.functions(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/functions.py:131) TESTING: checkVFPrintf from config.functions(config/BuildSystem/config/functions.py:131) Checks whether vfprintf requires a char * last argument, and if it does defines HAVE_VFPRINTF_CHAR Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.functions/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vfprintf(stdout, "%d", Argp ); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.functions/conftest.o -lstdc++ -ldl ================================================================================ TEST checkVSNPrintf from config.functions(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/functions.py:137) TESTING: checkVSNPrintf from config.functions(config/BuildSystem/config/functions.py:137) Checks whether vsnprintf requires a char * last argument, and if it does defines HAVE_VSNPRINTF_CHAR Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.functions/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp;char str[6]; vsnprintf(str,5, "%d", Argp ); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_VSNPRINTF" to "1" ================================================================================ TEST checkNanosleep from config.functions(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/functions.py:167) TESTING: checkNanosleep from config.functions(config/BuildSystem/config/functions.py:167) Check for functional nanosleep() - as time.h behaves differently for different compiler flags - like -std=c89 Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.functions/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { struct timespec tp; tp.tv_sec = 0; tp.tv_nsec = (long)(1e9); nanosleep(&tp,0); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_NANOSLEEP" to "1" ================================================================================ TEST checkMemmove from config.functions(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/functions.py:173) TESTING: checkMemmove from config.functions(config/BuildSystem/config/functions.py:173) Check for functional memmove() - as MS VC requires correct includes to for this test Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.functions/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { char c1[1], c2[1] = "c"; size_t n=1; memmove(c1,c2,n); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_MEMMOVE" to "1" ================================================================================ TEST checkSignalHandlerType from config.functions(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/functions.py:143) TESTING: checkSignalHandlerType from config.functions(config/BuildSystem/config/functions.py:143) Checks the type of C++ signals handlers, and defines SIGNAL_CAST to the correct value Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-oluu3nld/config.functions/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -fPIC -std=gnu++11 /tmp/petsc-oluu3nld/config.functions/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include static void myhandler(int sig) {} int main() { signal(SIGFPE,myhandler); ; return 0; } Running Executable WITHOUT threads to time it out Executing: g++ -o /tmp/petsc-oluu3nld/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.functions/conftest.o -lstdc++ -ldl Defined "SIGNAL_CAST" to " " ================================================================================ TEST checkFreeReturnType from config.functions(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/functions.py:153) TESTING: checkFreeReturnType from config.functions(config/BuildSystem/config/functions.py:153) Checks whether free returns void or int, and defines HAVE_FREE_RETURN_INT Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.functions/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.functions/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-oluu3nld/config.functions/conftest.c: In function ‘main’: /tmp/petsc-oluu3nld/config.functions/conftest.c:6:25: error: void value not ignored as it ought to be int ierr; void *p; ierr = free(p); return 0; ^ /tmp/petsc-oluu3nld/config.functions/conftest.c:6:5: warning: variable ‘ierr’ set but not used [-Wunused-but-set-variable] int ierr; void *p; ierr = free(p); return 0; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ierr; void *p; ierr = free(p); return 0; ; return 0; } Compile failed inside link ================================================================================ TEST checkVariableArgumentLists from config.functions(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/functions.py:159) TESTING: checkVariableArgumentLists from config.functions(config/BuildSystem/config/functions.py:159) Checks whether the variable argument list functionality is working Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.functions/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { va_list l1, l2; va_copy(l1, l2); return 0; ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_VA_COPY" to "1" ================================================================================ TEST checkClassify from config.functions(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/functions.py:85) TESTING: checkClassify from config.functions(config/BuildSystem/config/functions.py:85) Recursive decompose to rapidly classify functions as found or missing To confirm that a function is missing, we require a compile/link failure with only that function in a compilation unit. In contrast, we can confirm that many functions are present by compiling them all together in a large compilation unit. We optimistically compile everything together, then trim all functions that were named in the error message and bisect the result. The trimming is only an optimization to increase the likelihood of a big-batch compile succeeding; we do not rely on the compiler naming missing functions. Checking for functions [uname _lseek getrusage stricmp dlsym _pipe dlopen usleep clock popen getdomainname getpagesize realpath access sbreak _mkdir rand strcasecmp sleep _set_output_format dlerror PXFGETARG getwd dlclose fork socket gethostbyname gethostname getcwd _snprintf time readlink bzero _access lseek _getcwd snprintf memalign _sleep drand48] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.functions/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-oluu3nld/config.functions/conftest.c:30:6: warning: conflicting types for built-in function ‘strcasecmp’ char strcasecmp(); ^ /tmp/petsc-oluu3nld/config.functions/conftest.c:37:6: warning: conflicting types for built-in function ‘fork’ char fork(); ^ /tmp/petsc-oluu3nld/config.functions/conftest.c:45:6: warning: conflicting types for built-in function ‘bzero’ char bzero(); ^ /tmp/petsc-oluu3nld/config.functions/conftest.c:49:6: warning: conflicting types for built-in function ‘snprintf’ char snprintf(); ^ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char uname(); char _lseek(); char getrusage(); char stricmp(); char dlsym(); char _pipe(); char dlopen(); char usleep(); char clock(); char popen(); char getdomainname(); char getpagesize(); char realpath(); char access(); char sbreak(); char _mkdir(); char rand(); char strcasecmp(); char sleep(); char _set_output_format(); char dlerror(); char PXFGETARG(); char getwd(); char dlclose(); char fork(); char socket(); char gethostbyname(); char gethostname(); char getcwd(); char _snprintf(); char time(); char readlink(); char bzero(); char _access(); char lseek(); char _getcwd(); char snprintf(); char memalign(); char _sleep(); char drand48(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub__pipe) || defined (__stub____pipe) _pipe_will_always_fail_with_ENOSYS(); #else _pipe(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif #if defined (__stub__mkdir) || defined (__stub____mkdir) _mkdir_will_always_fail_with_ENOSYS(); #else _mkdir(); #endif #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-oluu3nld/config.functions/conftest.o: In function `main': conftest.c:(.text.startup+0xa1): warning: the `getwd' function is dangerous and should not be used. conftest.c:(.text.startup+0xe): undefined reference to `_lseek' conftest.c:(.text.startup+0x1c): undefined reference to `stricmp' conftest.c:(.text.startup+0x2a): undefined reference to `_pipe' conftest.c:(.text.startup+0x69): undefined reference to `sbreak' conftest.c:(.text.startup+0x70): undefined reference to `_mkdir' conftest.c:(.text.startup+0x8c): undefined reference to `_set_output_format' conftest.c:(.text.startup+0x9a): undefined reference to `PXFGETARG' conftest.c:(.text.startup+0xd2): undefined reference to `_snprintf' conftest.c:(.text.startup+0xee): undefined reference to `_access' conftest.c:(.text.startup+0xfc): undefined reference to `_getcwd' conftest.c:(.text.startup+0x111): undefined reference to `_sleep' collect2: error: ld returned 1 exit status Checking for functions [uname getrusage dlsym dlopen usleep clock popen getdomainname getpagesize realpath rand] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.functions/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char uname(); char getrusage(); char dlsym(); char dlopen(); char usleep(); char clock(); char popen(); char getdomainname(); char getpagesize(); char realpath(); char rand(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_UNAME" to "1" Defined "HAVE_GETRUSAGE" to "1" Defined "HAVE_DLSYM" to "1" Defined "HAVE_DLOPEN" to "1" Defined "HAVE_USLEEP" to "1" Defined "HAVE_CLOCK" to "1" Defined "HAVE_POPEN" to "1" Defined "HAVE_GETDOMAINNAME" to "1" Defined "HAVE_GETPAGESIZE" to "1" Defined "HAVE_REALPATH" to "1" Defined "HAVE_RAND" to "1" Checking for functions [strcasecmp dlerror dlclose fork socket gethostbyname gethostname time readlink bzero memalign drand48] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.functions/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-oluu3nld/config.functions/conftest.c:13:6: warning: conflicting types for built-in function ‘strcasecmp’ char strcasecmp(); ^ /tmp/petsc-oluu3nld/config.functions/conftest.c:16:6: warning: conflicting types for built-in function ‘fork’ char fork(); ^ /tmp/petsc-oluu3nld/config.functions/conftest.c:22:6: warning: conflicting types for built-in function ‘bzero’ char bzero(); ^ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char strcasecmp(); char dlerror(); char dlclose(); char fork(); char socket(); char gethostbyname(); char gethostname(); char time(); char readlink(); char bzero(); char memalign(); char drand48(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_STRCASECMP" to "1" Defined "HAVE_DLERROR" to "1" Defined "HAVE_DLCLOSE" to "1" Defined "HAVE_FORK" to "1" Defined "HAVE_SOCKET" to "1" Defined "HAVE_GETHOSTBYNAME" to "1" Defined "HAVE_GETHOSTNAME" to "1" Defined "HAVE_TIME" to "1" Defined "HAVE_READLINK" to "1" Defined "HAVE_BZERO" to "1" Defined "HAVE_MEMALIGN" to "1" Defined "HAVE_DRAND48" to "1" Checking for functions [_lseek] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.functions/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-oluu3nld/config.functions/conftest.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `_lseek' collect2: error: ld returned 1 exit status Checking for functions [stricmp] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.functions/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-oluu3nld/config.functions/conftest.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `stricmp' collect2: error: ld returned 1 exit status Checking for functions [_pipe] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.functions/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _pipe(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__pipe) || defined (__stub____pipe) _pipe_will_always_fail_with_ENOSYS(); #else _pipe(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-oluu3nld/config.functions/conftest.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `_pipe' collect2: error: ld returned 1 exit status Checking for functions [access] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.functions/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_ACCESS" to "1" Checking for functions [sbreak] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.functions/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-oluu3nld/config.functions/conftest.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `sbreak' collect2: error: ld returned 1 exit status Checking for functions [_mkdir] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.functions/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _mkdir(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__mkdir) || defined (__stub____mkdir) _mkdir_will_always_fail_with_ENOSYS(); #else _mkdir(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-oluu3nld/config.functions/conftest.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `_mkdir' collect2: error: ld returned 1 exit status Checking for functions [sleep] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.functions/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_SLEEP" to "1" Checking for functions [_set_output_format] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.functions/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _set_output_format(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-oluu3nld/config.functions/conftest.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `_set_output_format' collect2: error: ld returned 1 exit status Checking for functions [PXFGETARG] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.functions/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-oluu3nld/config.functions/conftest.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `PXFGETARG' collect2: error: ld returned 1 exit status Checking for functions [getwd] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.functions/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: stderr: /tmp/petsc-oluu3nld/config.functions/conftest.o: In function `main': conftest.c:(.text.startup+0x7): warning: the `getwd' function is dangerous and should not be used. Defined "HAVE_GETWD" to "1" Checking for functions [getcwd] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.functions/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_GETCWD" to "1" Checking for functions [_snprintf] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.functions/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-oluu3nld/config.functions/conftest.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `_snprintf' collect2: error: ld returned 1 exit status Checking for functions [_access] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.functions/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-oluu3nld/config.functions/conftest.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `_access' collect2: error: ld returned 1 exit status Checking for functions [lseek] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.functions/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_LSEEK" to "1" Checking for functions [_getcwd] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.functions/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-oluu3nld/config.functions/conftest.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `_getcwd' collect2: error: ld returned 1 exit status Checking for functions [snprintf] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.functions/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-oluu3nld/config.functions/conftest.c:13:6: warning: conflicting types for built-in function ‘snprintf’ char snprintf(); ^ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_SNPRINTF" to "1" Checking for functions [_sleep] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.functions/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-oluu3nld/config.functions/conftest.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `_sleep' collect2: error: ld returned 1 exit status ================================================================================ TEST checkMmap from config.functions(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/functions.py:179) TESTING: checkMmap from config.functions(config/BuildSystem/config/functions.py:179) Check for functional mmap() to allocate shared memory and define HAVE_MMAP Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.functions/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { int fd; fd=open("/tmp/file",O_RDWR); mmap((void*)0,100,PROT_READ|PROT_WRITE,MAP_SHARED,fd,0); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_MMAP" to "1" child config.functions 2.410779 ================================================================================ TEST configureMemorySize from config.utilities.getResidentSetSize(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/utilities/getResidentSetSize.py:31) TESTING: configureMemorySize from config.utilities.getResidentSetSize(config/BuildSystem/config/utilities/getResidentSetSize.py:31) Try to determine how to measure the memory usage Defined "USE_PROC_FOR_SIZE" to "1" Using /proc for PetscMemoryGetCurrentUsage() child config.utilities.getResidentSetSize 0.001811 ================================================================================ TEST configureFortranCommandLine from config.utilities.fortranCommandLine(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/utilities/fortranCommandLine.py:27) TESTING: configureFortranCommandLine from config.utilities.fortranCommandLine(config/BuildSystem/config/utilities/fortranCommandLine.py:27) Check for the mechanism to retrieve command line arguments in Fortran Checking for functions [] in library [''] [] Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-oluu3nld/config.libraries/conftest.o -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.compilersFortran -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.F90 Successful compile: Source: program main integer i character*(80) arg i = command_argument_count() call get_command_argument(i,arg) end Running Executable WITHOUT threads to time it out Executing: gfortran -o /tmp/petsc-oluu3nld/config.libraries/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.o -lstdc++ -ldl Defined "HAVE_FORTRAN_GET_COMMAND_ARGUMENT" to "1" child config.utilities.fortranCommandLine 0.090357 ================================================================================ TEST configureFeatureTestMacros from config.utilities.featureTestMacros(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/utilities/featureTestMacros.py:13) TESTING: configureFeatureTestMacros from config.utilities.featureTestMacros(config/BuildSystem/config/utilities/featureTestMacros.py:13) Checks if certain feature test macros are support All intermediate test results are stored in /tmp/petsc-oluu3nld/config.utilities.featureTestMacros Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.utilities.featureTestMacros/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-oluu3nld/config.utilities.featureTestMacros/conftest.c:4:20: fatal error: sysctl.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #define _POSIX_C_SOURCE 200112L #include int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #include int main() { ; return 0; } Defined "_BSD_SOURCE" to "1" Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _DEFAULT_SOURCE #include int main() { ; return 0; } Defined "_DEFAULT_SOURCE" to "1" Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include int main() { cpu_set_t mset; CPU_ZERO(&mset);; return 0; } Defined "_GNU_SOURCE" to "1" child config.utilities.featureTestMacros 0.154819 ================================================================================ TEST configureMissingUtypeTypedefs from config.utilities.missing(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/utilities/missing.py:55) TESTING: configureMissingUtypeTypedefs from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:55) Checks if u_short is undefined All intermediate test results are stored in /tmp/petsc-oluu3nld/config.utilities.missing Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.utilities.missing/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-oluu3nld/config.utilities.missing/conftest.c: In function ‘main’: /tmp/petsc-oluu3nld/config.utilities.missing/conftest.c:6:9: warning: unused variable ‘foo’ [-Wunused-variable] u_short foo; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { u_short foo; ; return 0; } ================================================================================ TEST configureMissingFunctions from config.utilities.missing(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/utilities/missing.py:61) TESTING: configureMissingFunctions from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:61) Checks for SOCKETS ================================================================================ TEST configureMissingSignals from config.utilities.missing(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/utilities/missing.py:79) TESTING: configureMissingSignals from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:79) Check for missing signals, and define MISSING_ if necessary Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.utilities.missing/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGABRT; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.utilities.missing/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGALRM; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.utilities.missing/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGBUS; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.utilities.missing/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCHLD; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.utilities.missing/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCONT; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.utilities.missing/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGFPE; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.utilities.missing/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGHUP; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.utilities.missing/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGILL; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.utilities.missing/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGINT; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.utilities.missing/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGKILL; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.utilities.missing/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGPIPE; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.utilities.missing/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGQUIT; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.utilities.missing/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSEGV; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.utilities.missing/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSTOP; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.utilities.missing/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSYS; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.utilities.missing/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTERM; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.utilities.missing/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTRAP; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.utilities.missing/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTSTP; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.utilities.missing/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGURG; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.utilities.missing/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR1; if (i); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.utilities.missing/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR2; if (i); ; return 0; } ================================================================================ TEST configureMissingGetdomainnamePrototype from config.utilities.missing(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/utilities/missing.py:96) TESTING: configureMissingGetdomainnamePrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:96) Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.utilities.missing/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-oluu3nld/config.utilities.missing/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -fPIC -std=gnu++11 /tmp/petsc-oluu3nld/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Running Executable WITHOUT threads to time it out Executing: g++ -o /tmp/petsc-oluu3nld/config.utilities.missing/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.utilities.missing/conftest.o -lstdc++ -ldl ================================================================================ TEST configureMissingSrandPrototype from config.utilities.missing(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/utilities/missing.py:121) TESTING: configureMissingSrandPrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:121) Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.utilities.missing/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #include int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Running Executable WITHOUT threads to time it out Executing: g++ -c -o /tmp/petsc-oluu3nld/config.utilities.missing/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -fPIC -std=gnu++11 /tmp/petsc-oluu3nld/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #include int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Running Executable WITHOUT threads to time it out Executing: g++ -o /tmp/petsc-oluu3nld/config.utilities.missing/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.utilities.missing/conftest.o -lstdc++ -ldl child config.utilities.missing 1.195125 ================================================================================ TEST configureFPTrap from config.utilities.FPTrap(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/utilities/FPTrap.py:27) TESTING: configureFPTrap from config.utilities.FPTrap(config/BuildSystem/config/utilities/FPTrap.py:27) Checking the handling of floating point traps Checking for header: sigfpe.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-oluu3nld/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-oluu3nld/config.headers/conftest.c" # 1 "/tmp/petsc-oluu3nld/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-oluu3nld/config.headers/conftest.c" 2 # 1 "/tmp/petsc-oluu3nld/config.headers/conffix.h" 1 # 3 "/tmp/petsc-oluu3nld/config.headers/conftest.c" 2 stderr: /tmp/petsc-oluu3nld/config.headers/conftest.c:3:20: fatal error: sigfpe.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-oluu3nld/config.headers/conftest.c:3:20: fatal error: sigfpe.h: No such file or directory compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-oluu3nld/config.headers/conftest.c:3:20: fatal error: sigfpe.h: No such file or directorycompilation terminated.: Checking for header: fpxcp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-oluu3nld/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-oluu3nld/config.headers/conftest.c" # 1 "/tmp/petsc-oluu3nld/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-oluu3nld/config.headers/conftest.c" 2 # 1 "/tmp/petsc-oluu3nld/config.headers/conffix.h" 1 # 3 "/tmp/petsc-oluu3nld/config.headers/conftest.c" 2 stderr: /tmp/petsc-oluu3nld/config.headers/conftest.c:3:19: fatal error: fpxcp.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-oluu3nld/config.headers/conftest.c:3:19: fatal error: fpxcp.h: No such file or directory compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-oluu3nld/config.headers/conftest.c:3:19: fatal error: fpxcp.h: No such file or directorycompilation terminated.: Checking for header: floatingpoint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: gcc -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-oluu3nld/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-oluu3nld/config.headers/conftest.c" # 1 "/tmp/petsc-oluu3nld/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-oluu3nld/config.headers/conftest.c" 2 # 1 "/tmp/petsc-oluu3nld/config.headers/conffix.h" 1 # 3 "/tmp/petsc-oluu3nld/config.headers/conftest.c" 2 stderr: /tmp/petsc-oluu3nld/config.headers/conftest.c:3:27: fatal error: floatingpoint.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-oluu3nld/config.headers/conftest.c:3:27: fatal error: floatingpoint.h: No such file or directory compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-oluu3nld/config.headers/conftest.c:3:27: fatal error: floatingpoint.h: No such file or directorycompilation terminated.: child config.utilities.FPTrap 0.050849 ================================================================================ TEST configureScalarType from PETSc.options.scalarTypes(/home/dsu/Soft/PETSc/petsc-3.13.2/config/PETSc/options/scalarTypes.py:40) TESTING: configureScalarType from PETSc.options.scalarTypes(config/PETSc/options/scalarTypes.py:40) Choose between real and complex numbers Scalar type is real All intermediate test results are stored in /tmp/petsc-oluu3nld/PETSc.options.scalarTypes Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-oluu3nld/PETSc.options.scalarTypes/conftest.c: In function ‘main’: /tmp/petsc-oluu3nld/PETSc.options.scalarTypes/conftest.c:6:21: warning: unused variable ‘a’ [-Wunused-variable] double b = 2.0; int a = isnormal(b); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnormal(b); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/PETSc.options.scalarTypes/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/PETSc.options.scalarTypes/conftest.o -lstdc++ -ldl Defined "HAVE_ISNORMAL" to "1" Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-oluu3nld/PETSc.options.scalarTypes/conftest.c: In function ‘main’: /tmp/petsc-oluu3nld/PETSc.options.scalarTypes/conftest.c:6:21: warning: unused variable ‘a’ [-Wunused-variable] double b = 2.0; int a = isnan(b); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnan(b); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/PETSc.options.scalarTypes/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/PETSc.options.scalarTypes/conftest.o -lstdc++ -ldl Defined "HAVE_ISNAN" to "1" Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-oluu3nld/PETSc.options.scalarTypes/conftest.c: In function ‘main’: /tmp/petsc-oluu3nld/PETSc.options.scalarTypes/conftest.c:6:21: warning: unused variable ‘a’ [-Wunused-variable] double b = 2.0; int a = isinf(b); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isinf(b); ; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/PETSc.options.scalarTypes/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/PETSc.options.scalarTypes/conftest.o -lstdc++ -ldl Defined "HAVE_ISINF" to "1" ================================================================================ TEST configurePrecision from PETSc.options.scalarTypes(/home/dsu/Soft/PETSc/petsc-3.13.2/config/PETSc/options/scalarTypes.py:81) TESTING: configurePrecision from PETSc.options.scalarTypes(config/PETSc/options/scalarTypes.py:81) Set the default real number precision for PETSc objects Checking C compiler works with __float128 Checking for functions [logq] in library ['quadmath'] [] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.libraries/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-oluu3nld/config.libraries/conftest.c: In function ‘_check_logq’: /tmp/petsc-oluu3nld/config.libraries/conftest.c:5:43: warning: ‘f’ is used uninitialized in this function [-Wuninitialized] static void _check_logq() { __float128 f; logq(f);; } ^ /tmp/petsc-oluu3nld/config.libraries/conftest.c:5:40: note: ‘f’ was declared here static void _check_logq() { __float128 f; logq(f);; } ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_logq() { __float128 f; logq(f);; } int main() { _check_logq();; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_LIBQUADMATH" to "1" C compiler with quadmath library Checking Fortran works with quadmath library Checking for functions [ ] in library ['quadmath'] [] Running Executable WITHOUT threads to time it out Executing: gfortran -c -o /tmp/petsc-oluu3nld/config.libraries/conftest.o -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.libraries -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.F90 Successful compile: Source: program main real*16 s,w; w = 2.0 ;s = cos(w) end Running Executable WITHOUT threads to time it out Executing: gfortran -o /tmp/petsc-oluu3nld/config.libraries/conftest -fPIC -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_LIBQUADMATH" to "1" Fortran works with quadmath library Checking for functions [logq] in library ['quadmath'] [] Running Executable WITHOUT threads to time it out Executing: gcc -c -o /tmp/petsc-oluu3nld/config.libraries/conftest.o -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-oluu3nld/config.libraries/conftest.c: In function ‘_check_logq’: /tmp/petsc-oluu3nld/config.libraries/conftest.c:5:43: warning: ‘f’ is used uninitialized in this function [-Wuninitialized] static void _check_logq() { __float128 f; logq(f);; } ^ /tmp/petsc-oluu3nld/config.libraries/conftest.c:5:40: note: ‘f’ was declared here static void _check_logq() { __float128 f; logq(f);; } ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_logq() { __float128 f; logq(f);; } int main() { _check_logq();; return 0; } Running Executable WITHOUT threads to time it out Executing: gcc -o /tmp/petsc-oluu3nld/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.o -lquadmath -lstdc++ -ldl Defined "HAVE_LIBQUADMATH" to "1" Adding ['quadmath'] to LIBS Defined "HAVE_REAL___FLOAT128" to "1" Defined "USE_REAL_DOUBLE" to "1" Defined make macro "PETSC_SCALAR_SIZE" to "64" Precision is double child PETSc.options.scalarTypes 0.539869 ================================================================================ TEST configureMkdir from config.programs(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/programs.py:22) TESTING: configureMkdir from config.programs(config/BuildSystem/config/programs.py:22) Make sure we can have mkdir automatically make intermediate directories Checking for program /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mkdir...not found Checking for program /home/dsu/Soft/PETSc/petsc-3.10.5/linux-gnu-opt/bin/mkdir...not found Checking for program /usr/local/sbin/mkdir...not found Checking for program /usr/local/bin/mkdir...not found Checking for program /usr/sbin/mkdir...not found Checking for program /usr/bin/mkdir...not found Checking for program /sbin/mkdir...not found Checking for program /bin/mkdir...found Running Executable WITHOUT threads to time it out Executing: /bin/mkdir -p .conftest/tmp Adding -p flag to /bin/mkdir -p to automatically create directories Defined make macro "MKDIR" to "/bin/mkdir -p" ================================================================================ TEST configureAutoreconf from config.programs(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/programs.py:44) TESTING: configureAutoreconf from config.programs(config/BuildSystem/config/programs.py:44) Check for autoreconf Checking for program /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/autoreconf...not found Checking for program /home/dsu/Soft/PETSc/petsc-3.10.5/linux-gnu-opt/bin/autoreconf...not found Checking for program /usr/local/sbin/autoreconf...not found Checking for program /usr/local/bin/autoreconf...not found Checking for program /usr/sbin/autoreconf...not found Checking for program /usr/bin/autoreconf...not found Checking for program /sbin/autoreconf...not found Checking for program /bin/autoreconf...not found Checking for program /usr/games/autoreconf...not found Checking for program /usr/local/games/autoreconf...not found Checking for program /snap/bin/autoreconf...not found Checking for program /home/dsu/Soft/Paraview/ParaView-5.5.0/bin/autoreconf...not found Checking for program /home/dsu/Soft/VisIt/visit2_13_0.linux-x86_64/bin/autoreconf...not found Checking for program /home/dsu/Soft/Intel/parallel_studio_2019/bin/autoreconf...not found Checking for program /home/dsu/Soft/Paraview/ParaView-5.5.0/bin/autoreconf...not found Checking for program /home/dsu/Soft/VisIt/visit2_13_0.linux-x86_64/bin/autoreconf...not found Checking for program /home/dsu/Soft/Intel/parallel_studio_2019/bin/autoreconf...not found Checking for program /home/dsu/Soft/PETSc/petsc-3.13.2/lib/petsc/bin/win32fe/autoreconf...not found Unable to find programs ['autoreconf'] providing listing of each search directory to help debug Path provided in Python program Path provided by default path [] ['mpichversion', 'h5unjam', 'h5perf', 'h5dump', 'mpic++', 'h5copy', 'mpiexec', 'h5import', 'mpirun', 'h5debug', 'gif2h5', 'h5repart', 'h5ls', 'hydra_nameserver', 'mpicxx', 'h5jam', 'ph5diff', 'h5redeploy', 'mpif90', 'h5mkgrp', 'h5pcc', 'h5perf_serial', 'h52gif', 'h5repack', 'mpivars', 'mpifort', 'mpif77', 'parkill', 'h5diff', 'mpiexec.hydra', 'hydra_persist', 'h5pfc', 'h5stat', 'hydra_pmi_proxy', 'mpicc'] [] ['mcc', 'cmpfillin', 'cgal_make_macosx_app', 'cgal_create_CMakeLists', 'ndmetis', 'gpmetis', 'deploytool', 'matlab', 'cgal_create_cmake_script', 'mbuild', 'm2gmetis', 'mex', 'mpmetis', 'graphchk'] ['grpconv', 'rpc.mountd', 'x2gocleansessions', 'su-to-root', 'cupsfilter', 'lpadmin', 'safe_finger', 'grpunconv', 'deluser', 'iconvconfig', 'update-passwd', 'rsyslogd', 'grub-mkconfig', 'tor-instance-create', 'dmidecode', 'dnsmasq', 'install-sgmlcatalog', 'dkms', 'NetworkManager', 'rtcwake', 'rpc.svcgssd', 'install-menu', 'update-icon-caches', 'nfsidmap', 'hddtemp', 'pppoeconf', 'nfnl_osf', 'update-alternatives', 'fdformat', 'laptop-detect', 'popcon-largest-unused', 'dpkg-preconfigure', 'logrotate', 'groupmod', 'invoke-rc.d', 'update-pciids', 'update-default-aspell', 'filefrag', 'create-cracklib-dict', 'kerneloops', 'cupsaccept', 'setvesablank', 'pwconv', 'zic', 'newusers', 'dpkg-reconfigure', 'ownership', 'pam_timestamp_check', 'dpkg-divert', 'useradd', 'popularity-contest', 'xfce4-kiosk-query', 'tcpdump', 'blkmapd', 'cupsctl', 'pppdump', 'pm-suspend-hybrid', 'sensors-detect', 'update-default-wordlist', 'nfsstat', 'saned', 'readprofile', 'cppw', 'update-java-alternatives', 'pppd', 'update-grub-gfxpayload', 'ModemManager', 'pam-auth-update', 'update-dictcommon-hunspell', 'cupsaddsmb', 'e4defrag', 'update-rc.d', 'update-info-dir', 'acpid', 'chpasswd', 'arp', 'usb_modeswitch', 'update-inetd', 'paperconfig', 'isadump', 'vigr', 'lpc', 'thermald', 'delgroup', 'vbetool', 'remove-default-ispell', 'tcpdchk', 'cpgr', 'select-default-ispell', 'rpcdebug', 'tarcat', 'getweb', 'usb_modeswitch_dispatcher', 'pwck', 'pm-hibernate', 'remove-shell', 'update-fonts-alias', 'service', 'alsa-info.sh', 'gss_clnt_send_err', 'rpc.idmapd', 'remove-default-wordlist', 'ippusbxd', 'cracklib-check', 'cracklib-format', 'tor', 'cups-genppdupdate', 'grub-probe', 'guest-account', 'irqbalance', 'avahi-daemon', 'cron', 'sshd', 'unity-greeter', 'rmt-dump', 'update-usbids', 'pwunconv', 'gss_destroy_creds', 'nrpe', 'addgnupghome', 'pm-powersave', 'apparmor_status', 'chat', 'nfsdcltrack', 'install-docs', 'update-gsfontmap', 'groupadd', 'cracklib-unpacker', 'visudo', 'update-grub2', 'exportfs', 'mklost+found', 'ip6tables-apply', 'add-shell', 'update-binfmts', 'rmt', 'locale-gen', 'select-default-wordlist', 'pptpsetup', 'update-default-ispell', 'grpck', 'rmt-tar', 'x2goshowblocks', 'nfsiostat', 'mkinitramfs', 'lpinfo', 'tcpd', 'ispell-autobuildhash', 'update-cracklib', 'gnome-menus-blacklist', 'x2golistsessions_root', 'update-ca-certificates', 'ufw', 'cupsd', 'aa-exec', 'cupsenable', 'lpmove', 'bluetoothd', 'aptd', 'aspell-autobuildhash', 'update-mime', 'start-statd', 'gconf-schemas', 'reject', 'grub-bios-setup', 'nologin', 'make-ssl-cert', 'update-grub', 'grub-macbless', 'usermod', 'ldattach', 'addgroup', 'alsactl', 'rpc.nfsd', 'pam_getenv', 'update-icon-caches.gtk2', 'uuidd', 'upgrade-from-grub-legacy', 'rtkitctl', 'mate-power-backlight-helper', 'update-dictcommon-aspell', 'vcstime', 'pppstats', 'applygnupgdefaults', 'pptp', 'update-xmlcatalog', 'aa-remove-unknown', 'grub-install', 'rpcinfo', 'vpddecode', 'validlocale', 'gparted', 'iucode_tool', 'adduser', 'tcpdmatch', 'accept', 'try-from', 'usbmuxd', 'grub-mkdevicemap', 'isaset', 'iio-sensor-proxy', 'tunelp', 'arpd', 'aa-status', 'rpc.gssd', 'mate-display-properties-install-systemwide', 'update-locale', 'and', 'dpkg-statoverride', 'cupsreject', 'tzconfig', 'gpartedbin', 'update-initramfs', 'update-mate-menu-x2go', 'grub-set-default', 'chgpasswd', 'update-fonts-dir', 'update-catalog', 'iptables-apply', 'anacron', 'toshsat1800-irdasetup', 'realm', 'update-fonts-scale', 'x2godbadmin', 'accessdb', 'vipw', 'cups-browsed', 'pppoe-discovery', 'userdel', 'e2freefrag', 'rfkill', 'grub-reboot', 'cracklib-packer', 'lightdm-session', 'pm-suspend', 'pppconfig', 'mountstats', 'genl', 'lightdm', 'chroot', 'cupsdisable', 'biosdecode', 'iucode-tool', 'avahi-autoipd', 'groupdel'] ['rcp', 'gem2.3', 'mate-session-inhibit', 'asan_symbolize-3.9', 'llvm-mc-3.8', 'foo2xqx', 'x2goruncommand', 'flipdiff', 'cinnamon-session-cinnamon2d', 'elfedit', 'c_rehash', 'monitor-sensor', 'host', 'pon', 'dbus-monitor', 'qdoc', 'hp-doctor', 'mclasserase', 'mkfontdir', 'dh_installmodules', 'x86_64-linux-gnu-ld', 'pbmtext', 'check-language-support', 'wall', 'flock', 'foo2hbpl2-wrapper', 'unzipsfx', 'qmlplugindump', 'etags', 'ld.bfd', 'sha384sum', 'rtstat', 'pilfile', 'arm2hpdl', 'llvm-dis-3.9', 'telnet.netkit', 'mpirun.openmpi', 'mlocate', 'syslinux-legacy', 'dh_suidregister', 'llvm-extract', 'llvm-nm', '7z', 'su-to-root', 'llvm-mc-3.9', 'scanimage', 'vi', 'pdfunite', 'ngettext', 'pnmpsnr', 'hp-scan', 'xfconf-query', 'updatedb.mlocate', 'pdftops', 'llvm-symbolizer-3.9', 'lowriter', 'mdeltree', 'lsb_release', 'hp-info', 'grub-mkrescue', 'busctl', 'foo2zjs-wrapper', 'nm-connection-editor', 'orte-dvm', 'setleds', 'x86_64-linux-gnu-readelf', 'last', 'pbmclean', 'gawk', 'xdg-open', 'ubuntu-support-status', 'ranlib', 'ruby', 'cpp-5', 'mdir', 'pdfimages', 'fitstopnm', 'icontopbm', 'dh_auto_test', 'po2debconf', 'intel_display_crc', 'gucharmap', 'gnome-calculator', 'activity-log-manager', 'compare', 'pnmtoxwd', 'mdel', 'min12xxw', 'system-config-printer-applet', 'routel', 'gfortran', 'cinnamon-session', 'pkcheck', 'w.procps', 'msd-locate-pointer', 'ppmflash', 'pbmtonokia', 'word-list-compress', 'qmlprofiler', 'mmd', 'brushtopbm', 'msgunfmt', 'gpg-zip', 'intel_panel_fitter', 'cinnamon-extension-tool', 'cups-calibrate', 'pcxtoppm', 'lsdiff', 'uic3', 'deja-dup', 'amuFormat.sh', 'ppmchange', 'gnome-terminal.wrapper', 'qmleasing', 'java', 'obj2yaml', 'pbmtoppa', 'tracepath6', 'dgscat-int32', 'whoopsie-preferences', 'rawtoppm', 'splitfont', 'hwloc-gather-topology', 'nmtui', 'showrgb', 'gkbd-keyboard-display', 'unexpand', 'caja-connect-server', 'emacs24-x', 'llvm-mc', 'apport-unpack', 'view', 'gsdj500', 'ompi-top', 'ppmtoyuvsplit', 'clang-apply-replacements-3.9', 'mate-volume-control-applet', 'grog', 'x86_64-linux-gnu-gcc-ar', 'rpmverify', 'pnmsmooth', 'intel_framebuffer_dump', 'ld.gold', 'mate-appearance-properties', 'llvm-c-test-3.8', 'msgfmt', 'dh_icons', 'msggrep', 'yelp', 'apt-cache', 'llvm-nm-3.9', 'ppmspread', 'llvm-readobj-3.9', 'hcitool', 'llvm-dsymutil-3.9', 'unattended-upgrades', 'dropbox', 'mate-session', 'ppmfade', 'mate-search-tool', 'whereis', 'aplay', 'llc', 'pbmto10x', 'ftp', 'pnmcat', 'pnmtotiff', 'systemd-cat', 'grub-mklayout', 'lnstat', 'pbmtoatk', 'hp-pkservice', 'cinnamon-session-cinnamon', 'pg', 'deja-dup-preferences', 'csplit', 'llvm-dwarfdump', 'users', 'llvm-bcanalyzer-3.9', 'lwp-request', 'write', 'rlogin', 'pdf2dsc', 'intel_lid', 'dbus-run-session', 'gvfs-ls', 'pwgen', 'pgmtopbm', 'udisksctl', 'msgfilter', 'env', 'pstruct', 'gslj', 'glxinfo', 'bluetooth-sendto', 'xedid', 'intel-gen4disasm', 'ppmtopcx', 'mate-about', 'renice', 'rpmspec', 'hp-clean', 'pgmnorm', 'msginit', 'unity-webapps-runner', 'fail2ban-server', 'install-menu', 'f77', 'x2gofm', 'xlsfonts', 'snapctl', 'gsnd', 'xfce4-panel', 'gettext.sh', 'pgmtoppm', 'ppmtotga', 'xedit', 'mpiexec.openmpi', 'x86_64-linux-gnu-ld.bfd', 'rpcgen', 'lzcat', 'wpa_passphrase', 'dh_installppp', 'dpkg-source', 'ppmhist', 'google-chrome', 'llvm-config-3.8', 'pacat', 'mmount', 'verify-uselistorder-3.8', 'x86_64-linux-gnu-cpp', 'gpasswd', 'gst-device-monitor-1.0', 'bmptoppm', 'dgscat', 'obj2yaml-3.9', 'updatedb', 'x86_64-linux-gnu-gcov', 'xditview', 'pbmtopi3', 'printerbanner', 'recountdiff', 'gcc', 'shuf', 'llvm-lib-3.8', 'dh_testroot', 'ppmdist', 'localectl', 'cinnamon-file-dialog', 'from', 'intel_display_poller', 'xfwm4-settings', 'lpr', 'mate-mouse-properties', 'hp-plugin-ubuntu', 'iptables-xml', 'x86_64-linux-gnu-elfedit', 'dh_builddeb', 'eqn', 'resize', 'cinnamon-looking-glass', 'pamoil', 'x86_64-linux-gnu-c++filt', 'opt-3.9', 'update-alternatives', 'gnome-screenshot', 'anytopnm', 'alsabat', 'tap2rpm', 'arecord', 'lzfgrep', 'psfstriptable', 'llvm-size', 'dbus-cleanup-sockets', 'gatttool', 'pbmpscale', 'clhsdb', 'llvm-ranlib', 'llvm-tblgen', 'test', 'svnauthz-validate', 'libwacom-list-local-devices', 'ms_print', 'orbd', 'thunar', 'llvm-cxxdump-3.9', 'pnmpad', 'gtbl', 'llvm-link-3.9', 'ibus-daemon', 'savelog', 'llvm-cov-3.9', 'dpkg-gencontrol', 'cupstestdsc', 'clear_console', 'grub-mkrelpath', 'dehtmldiff', 'mkfontscale', 'c-index-test-3.9', 'nemo-connect-server', 'llc-3.8', 'mate-wm', 'engrampa', 'mate-system-monitor', 'infotocap', 'pbmtog3', 'pamon', 'pnmtojpeg', 'speech-dispatcher', 'lpoptions', 'thunar-volman', 'dgmap', 'xfontsel', 'xconsole', 'yes', 'x2gocmdexitmessage', 'atril-previewer', 'lessfile', 'x2goversion', 'conjure-im6', 'apt-key', 'gnome-system-log-pkexec', 'mate-keyboard-properties', 'nvidia-cuda-mps-server', 'grub-mount', 'bdftruncate', 'intel_gpu_top', 'aplaymidi', 'mtype', 'ssh-import-id-gh', 'x2goumount-session', 'opt-3.8', 'jedit', 'intel_stepping', 'lzgrep', 'addpart', 'flex', 'gs', 'xscreensaver-getimage-video', 'grepdiff', 'xwud', 'xdg-screensaver', 'lupdate', 'mate-font-viewer', 'thunar-volman-settings', 'xdg-desktop-icon', 'gapplication', 'dgscat-int64', 'getent', 'apt-ftparchive', 'xzdiff', 'sane-find-scanner', 'cinnamon-slideshow', 'gcalccmd', 'update-desktop-database', 'apport-bug', 'foo2zjs', 'svn', 'ompi-ps', 'ppmtoilbm', 'ppmquant', 'piconv', 'unshare', 'kerneloops-submit', 'vstp', 'browse', 'rpmkeys', 'foo2hp', 'ubuntu-webapps-update-index', 'mpiexec', 'gvfs-move', 'gist-paste', 'pygettext2.7', 'esc-m', 'whois', 'fakeroot', 'clang-3.9', 'ompi-server', 'setterm', 'linux-version', 'bootctl', 'fc-validate', 'pnmtosgi', 'msgcmp', 'clang-query-3.9', 'x2golistdesktops', 'pasuspender', 'ico', 'nvidia-xconfig', 'resizecons', 'foo2hbpl2', 'debconf-apt-progress', 'pilconvert', 'pnmtotiffcmyk', 'mbadblocks', 'xfsinfo', 'systemd-analyze', 'aspell', 'gnome-keyring', 'sotruss', 'dh_makeshlibs', 'pinentry-x11', 'convert', 'intel_backlight', 'llvm-ar-3.9', 'transset', 'intel_watermark', 'cg_annotate', 'apport-collect', 'wish', 'pluma', 'xflock4', 'gnome-software', 'uuidgen', 'mate-session-properties', 'unity-settings-daemon', 'git-upload-archive', 'xscreensaver-getimage-file', 'g++-5', 't1disasm', 'groups', 'gprof', 'ppmtompeg', 'xfce4-appfinder', 'pic', 'tail', 'pycompile', 'vino-preferences', 'apropos', 'dh_installchangelogs', 'conch', 'ssh-agent', 'lastlog', 'pnmdepth', 'eject', 'libnetcfg', 'lscpu', 'cmpfillin', 'qmlmin', 'sensible-editor', 'hp-align', 'mate-window-properties', 'systemd-stdio-bridge', 'display-im6', 'startxfce4', 'lwp-download', 'irb', 'qmltestrunner', 'qhelpconverter', 'ppmdither', 'scp', 'llvm-extract-3.9', 'llvm-nm-3.8', 'gst-install', 'mkmanifest', 'pilfile.py', 'orca-dm-wrapper', 'pydoc2.7', 'md5sum.textutils', 'hostnamectl', 'prezip', 'rdoc2.3', 'marco-window-demo', 'pnmsplit', 'pdb3.5', 'fonttosfnt', 'smproxy', 'x86_64-linux-gnu-addr2line', 'mpirun', 'atobm', 'ispell-wrapper', 'foo2hiperc', 'git', 'vino-passwd', 'zeitgeist-datahub', 'bioradtopgm', 'dpkg-buildpackage', 'cpan5.22-x86_64-linux-gnu', 'mpartition', 'pvrenderserver', 'prove', 'ppmlabel', 'fix-qdf', 'setfacl', 'initctl2dot', 'erb2.3', 'gpgsplit', 'cs2cs', 'metacity-window-demo', 'nemo-desktop', 'nautilus-autorun-software', 'dgmap-long', 'mate-terminal.wrapper', 'xfce4-mime-settings', 'avahi-publish-service', 'combinediff', 'cinnamon-control-center', 'ppmtomitsu', 'usbhid-dump', 'dpkg-divert', 'ps2pdfwr', 'mkpasswd', 'aconnect', 'nawk', 'debconf-set-selections', 'vtk6python', 'dh_link', 'mmove', 'cinnamon-session-quit', 'foo2xqx-wrapper', 'ppmnorm', 'hp-query', 'kbdinfo', 'clang-include-fixer-3.9', 'top', 'x2gogetapps', 'awk', 'pildriver', 'msd-datetime-mechanism', 'which', 'rfcomm', 'desktop-file-edit', 'dgmap-int64', 'openssl', 'hwloc-ps', 'llvm-ranlib-3.9', 'convert-im6', 'infobrowser', 'Thunar', 'lprm', 'llvm-as-3.9', 'dpkg-checkbuilddeps', 'bccmd', 'grub-kbdcomp', 'mcd', 'dh_installcatalogs', 'orte-clean', 'gtk-launch', 'xkbvleds', 'paste', 'display', 'cg_merge', 'pnmtopalm', 'dgpart', 'man', 'x86_64-pc-linux-gnu-pkg-config', 'djpeg', 'lp', 'bugpoint-3.8', 'xscreensaver-text', 'find-all-symbols-3.9', 'volname', 'leaftoppm', 'gnome-session-quit', 'ctest', 'gpg-connect-agent', 'nemo-autorun-software', 'orage', 'gemtopnm', 'ar', 'grub-glue-efi', 'gtk-builder-tool', 'llvm-ranlib-3.8', 'llvm-dwarfdump-3.9', 'appres', 'rename.ul', 'mkfifo', 'pi1toppm', 'mesg', 'printenv', 'rstart', 'chcon', 'fc-cache', 'c99', 'xfrun4', 'pbmtobbnbg', 'xzmore', 'nslookup', 'x2gosetkeyboard', 'od', 'x86_64', 'splain', 'mate-dictionary', 'xkbcomp', 'trust', 'dh_autotools-dev_updateconfig', 'chardet', 'cheese', 'ppmtoleaf', 'xlsclients', 'pbmupc', 'xzcmp', 'mmcli', 'tr', 'synclient', 'thunar-settings', 'edit', 'a11y-profile-manager-indicator', 'lldb-server-3.9.1-3.9', 'make', 'system-config-printer', 'x2goagent', 'pilprint.py', 'gconf-merge-tree', 'ocat', 'dh_installcron', 'tificc', 'gsbj', 'composite-im6', 'pbmtopgm', 'caja-autorun-software', 'pbmmask', 'ghostscript', 'uz', 'gnome-session-inhibit', 'pnmtosir', 'cpan', 'yuvsplittoppm', 'qtchooser', 'dh_desktop', 'systemd-delta', 'ciptool', 'on_ac_power', 'passwd', 'qmlbundle', 'nroff', 'mshortname', 'fstopgm', 'git-shell', 'gvfs-monitor-file', 'ptar', 'alsamixer', 'install-info', 'svnsync', 'gcc-ar-5', 'glxheads', 'x86_64-linux-gnu-g++', 'cupstestppd', 'xfdesktop', 'acpi_listen', 'ps2ps2', 'psidtopgm', 'msgcat', 'xwdtopnm', 'colrm', 'llvm-tblgen-3.8', 'tput', 'dc', 'xdg-user-dir', 'foo2hiperc-wrapper', 'ppmtoyuv', 'winicontoppm', 'pbmreduce', 'nvidia-smi', 'nsenter', 'sensors', 'namei', 'nmtui-connect', 'slxdecode', 'sum', 'geod', 'x86_64-linux-gnu-gfortran', 'clang++-3.9', 'ipcs', 'x86_64-linux-gnu-gcov-tool', 'pnmtoplainpnm', 'rpmdb', 'gcov', 'svnserve', 'json_pp', 'llvm-lto-3.9', 'opldecode', 'qml', 'pgmedge', 'sbigtopgm', 'skill', 'desktop-file-install', 'pnmtoddif', 'foo2lava', 'pnmcrop', 'poff', 'pdb', 'slogin', 'ubuntu-software', 'ppmdim', 'ibus-setup', 'gst-discoverer-1.0', 'xfce4-notifyd-config', 'apt-get', 'bluetoothctl', 'zip', 'ctags.emacs24', 'gst-launch-1.0', 'chardet3', 'baobab', 'avahi-publish', 'npm', 'fallocate', 'pnmhisteq', 'eyuvtoppm', 'pgmbentley', 'atril-thumbnailer', 'tclsh', 'llvm-pdbdump-3.9', 'base32', 'mate-panel-screenshot', 'viewres', 'fc-match', 'xfwm4', 'ucf', 'stat', 'nvidia-debugdump', 'seq', 'parec', 'lodraw', 'sbkeysync', 'koi8rxterm', 'gvfs-monitor-dir', 'xfd', 'llvm-dwarfdump-3.8', 'remmina', 'ppmforge', 'gsettings-data-convert', 'gst-play-1.0', 'xdg-mime', 'ppmqvga', 'speaker-test', 'add-apt-repository', 'x2goterminate-session', 'sha256sum', 'dh_gencontrol', 'htop', 'x86_64-linux-gnu-gcc-ar-5', 'unity-webapps-qml-launcher', 'gpgv', 'dh_installxmlcatalogs', 'pgmkernel', 'xvminitoppm', 'pdfseparate', 'h2ph', 'dpkg-scansources', 'hp-colorcal', 'orte-server', 'p11-kit', 'xzegrep', 'llvm-dwp-3.8', 'pybuild', 'mate-settings-daemon', 'amidi', 'uxterm', 'cinnamon-screensaver-command', 'llvm-dwp-3.9', 'psicc', 'dpkg-query', 'dgtst-int32', 'xbiff', 'xrotate', 'ps2pdf14', 'llvm-objdump-3.8', 'eom', 'fail2ban-testcases', 'loadkeys', 'dgord-long', 'xdg-email', 'dh_shlibdeps', 'pbmtogo', 'gold', 'tic', 'ppmtoxpm', 'avahi-browse', 'xmlpatterns', 'svnrdump', 'orte-top', 'cpufreq-info', 'gendiff', 'dh_installemacsen', 'comm', 'mdu', 'bison', 'gnome-thumbnail-font', 'systemd-resolve', 'node', 'gpg', 'xsetpointer', 'nxagent', 'notify-send', 'bsd-from', 'hydra_nameserver', 'cd-fix-profile', 'xinit', 'rpm', 'xfce4-session', 'clang-rename-3.9', '2to3-3.5', 'ckeygen', 'gnome-settings-daemon', 'qpdf', 'cjpeg', 'grub-mkpasswd-pbkdf2', 'orte-ps', 'xfce4-popup-directorymenu', 'valgrind-di-server', 'orterun', 'inxi', 'xload', 'session-migration', 'hp-timedate', 'readelf', 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'caja-file-management-properties', 'intel-gen4asm', 'emacs24', 'py3clean', 'btattach', 'systemd-cgls', 'signond', 'prlimit', 'setarch', 'lorder', 'gvfs-less', 'lldb-3.9.1-3.9', 'sg', 'cautious-launcher', 'policytool', 'prime-supported', 'qpdldecode', 'pygettext3.5', 'onboard-settings', 'pamfile', 'setsid', 'crc32', 'x86_64-linux-gnu-gcc-ranlib', 'whoami', 'mawk', 'llvm-profdata-3.9', 'ompi_info', 'im-launch', 'ubuntu-drivers', 'gparted-pkexec', 'install', 'unattended-upgrade', 'dgmap-int32', 'dpkg-buildflags', 'dh_movefiles', 'pnminterp', 'google-chrome-stable', 'print', 'pl2pm', 'xscreensaver-demo', 'llvm-as-3.8', 'hipstopgm', 'svnfsfs', 'pbmtoybm', 'encguess', 'svnmucc', 'x2gocaja', 'getfacl', 'llvm-lib-3.9', 'mzip', 'ppmtogif', 'upload-system-info', 'mscompress', 'qmlimportscanner', 'intel_l3_parity', 'shred', 'lintian', 'ompi-clean', 'lp_solve', 'update-notifier', 'dh_clean', 'dh_auto_configure', 'mate-thumbnail-font', 'dh_strip_nondeterminism', 'time', 'vglgenkey', 'firefox', 'grub-menulst2cfg', 'identify', 'snap', 'pnmremap', 'gcat', 'mimeopen', 'metacity-message', 'dh_installmime', 'ppmtopgm', 'c89-gcc', 'gvfs-mkdir', 'isovfy', 'xauth', 'lsinitramfs', 'preunzip', 'pamdice', 'webapp-container', 'yaml2obj', 'zeisstopnm', 'invgeod', 'mate-invest-chart', 'msgcomm', 'asciitopgm', 'xfce4-about', 'ipod-read-sysinfo-extended', 'pygettext', 'dgtst-int64', 'pico', 'systemd-cgtop', 'avahi-browse-domains', 'mcat', 'graphchk', 'zenity', 'hd', 'eps2eps', 'pvserver', 'pgmoil', 'pcimodules', 'xlet-settings', 'nmtui-edit', 'sensible-pager', 'pnmtofits', 'pdftotext', 'marco', 'parkill', 'pphs', 'nmtui-hostname', 'less', 'animate', 'tkconch', 'ptargrep', 'dgord-int64', 'faked-tcp', 'intel_aubdump', 'lli-child-target-3.9', 'zipnote', 'createfontdatachunk', 'run-mailcap', 'enchant', 'xterm', 'nm-online', 'partx', 'nmcli', 'setmetamode', 'systemd-run', 'pod2usage', 'rgrep', 'tabs', 'xkbwatch', 'gvfs-open', 'stdbuf', 'paraview', 'dpkg-name', 'caja', 'x86_64-linux-gnu-gcc-nm', 'session-installer', 'foo2slx-wrapper', 'alsaloop', 'nvidia-persistenced', 'ischroot', 'xprop', 'sessreg', 'realpath', 'xfdesktop-settings', 'f2py', 'symcryptrun', 'pdfinfo', 'setlogcons', 'transmission-gtk', 'bmptopnm', 'sudoedit', 'torify', 'pbmtoxbm', 'mpiexec.hydra', 'fail2ban-client', 'reset', 'mate-control-center', 'sudoreplay', 'desktop-file-validate', 'xpci', 'file-rename', 'hp-config_usb_printer', 'nsupdate', 'pbmtoplot', 'x11perfcomp', 'fc-cat', 'rendercheck', 'xkbbell', 'gnome-file-share-properties', 'dh_installinfo', 'xfce4-popup-windowmenu', 'gnome-system-monitor', 'mtools', 'cmp', 'qlalr', 'ntfsdecrypt', 'foo2oak', 'ppmtv', 'ppmcie', 'dh_installmenu', 'lofromtemplate', 'codepage', 'tifftopnm', 'lconvert', 'lspgpot', 'hsdb', 'intel_opregion_decode', 'llvm-rtdyld', 'ssh-add', 'x86_64-linux-gnu-gcc-5', 'mate-keybinding-properties', 'rediff', 'hydra_persist', 'ibus', 't1asm', 'hwloc-annotate', 'ppmtolj', 'pamdeinterlace', 'intel_gpu_time', 'xfhelp4', 'etags.emacs24', 'ps2ascii', 'ncal', 'mate-default-applications-properties', 'deallocvt', 'twistd', 'rmiregistry', 'igawk', 'dh_gconf', 'tee', 'intel_forcewaked', 'hwloc-distrib', 'gsettings-schema-convert', 'bashbug', 'mcomp', 'linguist', 'tracepath', 'oclock', 'dh_installman', 'glib-compile-resources', 'padsp', 'deb-systemd-invoke', 'pi3topbm', 'gdbserver', 'dh_python3', 'sancov-3.9', 'pnmpaste', 'taskset', 'imgtoppm', 'igt_stats', '411toppm', 'bsd-write', 'scp-dbus-service', 'mpaste', 'x-terminal-emulator', 'gpgconf', 'intel-virtual-output', 'rmid', 'evince-thumbnailer', 'llvm-as', 'lz', 'wc', 'ppmcolormask', 'ssh-argv0', 'split', 'dotlockfile', 'install-printerdriver', 'mate-network-properties', 'fixcvsdiff', 'xscreensaver-command', 'globaltime', 'watchgnupg', 'col', 'i386', 'catman', 'shasum', 'dh_installexamples', 'eog', 'sha512sum', 'pnmnoraw', 'dh_perl', 'dh_installxfonts', 'dh_installmanpages', 'xrefresh', 'pyclean', 'debconf-copydb', 'fc-list', 'loffice', 'dh_installifupdown', 'atktopbm', 'cinnamon-desktop-editor', 'chardetect3', 'gnome-language-selector', 'dpkg-gensymbols', 'sgitopnm', 'gcc-ar', 'script', 'xmlpatternsvalidator', 'verify-uselistorder-3.9', 'bluemoon', 'btmgmt', 'lli', 'hwloc-distances', 'update-mime-database.real', 'llvm-dis-3.8', 'free', '2to3', 'wish8.6', 'dconf', 'xzfgrep', 'qdoc3', 'POST', 'pathchk', 'vim.tiny', 'x2gostartagent', 'proj', 'x86_64-linux-gnu-g++-5', 'x86_64-linux-gnu-nm', 'netkit-ftp', 'qmake', 'gnome-open', 'dh_strip', 'c89', 'pinky', 'dbiproxy', 'xrandr-tool', 'pf2afm', 'x2goresume-session', 'pgmslice', 'sputoppm', 'sbverify', 'mate-power-manager', 'pdftohtml', 'rpmquery', 'deb-systemd-helper', 'rhythmbox-client', 'apt-add-repository', 'pamstack', 'nvidia-cuda-mps-control', 'intel_dump_decode', 'python2', 'lli-3.8', 'pnmtorast', 'gdbus', 'ps2txt', 'enhancer', 'ppmshadow', 'qcollectiongenerator', 'strings', 'neqn', 'pkexec', 'cut', 'pnmgamma', 'dh_dkms', 'gtf', 'bitmap', 'hydra_pmi_proxy', 'chage', 'viewer.py', 'ppdpo', 'pydoc3.5', 'locate', 'chrt', 'gcov-tool', 'x2goumount_session', 'spellintian', 'newgrp', 'gnome-power-statistics', 'pstree.x11', 'invproj', 'foo2lava-wrapper', 'sdptool', 'getkeycodes', 'HEAD', 'bugpoint', 'grub-syslinux2cfg', 'atril', 'python3.5m', 'pamstretch', 'gconftool-2', 'ttfread', 'py3compile', 'pastebin', 'xgc', 'zipgrep', 'lispmtopgm', 'rgb3toppm', 'intel_reg_checker', 'ppmtopict', 'gpu-manager', 'lrelease', 'pgmcrater', 'dh_install', 'infocmp', 'scan-view-3.9', 'hbpldecode', 'fail2ban-regex', 'usb_printerid', 'gcc-nm', 'nad2bin', 'ppmtopj', 'qtdiag', 'gcr-viewer', 'x2goumount-session-mate', 'x86_64-linux-gnu-pkg-config', 'unity-control-center', 'mogrify-im6', 'pbmpage', 'ebrowse', 'dh_update_autotools_config', 'dh_auto_install', 'pdfdetach', 'xfce4-keyboard-settings', 'dbus-uuidgen', 'compose', 'ppmtoicr', 'hwloc-calc', 'ex'] ['dosfslabel', 'dumpe2fs', 'ntfsundelete', 'upstart-event-bridge', 'mkfs.bfs', 'iwspy', 'fsfreeze', 'apparmor_parser', 'ip6tables-save', 'findfs', 'mount.ntfs', 'telinit', 'restore', 'apm_available', 'reload', 'start', 'pccardctl', 'getpcaps', 'chcpu', 'stop', 'ntfslabel', 'killall5', 'upstart', 'get-quirk-options', 'udevadm', 'start-stop-daemon', 'key.dns_resolver', 'tune2fs', 'regdbdump', 'rtacct', 'halt', 'fsck.msdos', 'ifup', 'zramctl', 'rdump', 'swapoff', 'mkntfs', 'rtmon', 'installkernel', 'upstart-local-bridge', 'swapon', 'getcap', 'mntctl', 'mii-tool', 'getty', 'setvtrgb', 'fsck.nfs', 'runlevel', 'sfdisk', 'ntfscp', 'iptables-save', 'umount.udisks2', 'lsmod', 'e2fsck', 'mkfs.ntfs', 'on_ac_power', 'mkfs', 'fatlabel', 'e2undo', 'iwconfig', 'pivot_root', 'iptables-restore', 'hwclock', 'unix_chkpwd', 'mount.nfs4', 'sgdisk', 'poweroff', 'fixparts', 'mount.nfs', 'umount.nfs', 'logsave', 'tipc', 'rpc.statd', 'e2label', 'ifdown', 'isosize', 'wpa_action', 'swaplabel', 'reboot', 'partprobe', 'hdparm', 'fstrim', 'wpa_cli', 'pam_tally', 'ntfsresize', 'bridge', 'fsck.vfat', 'brltty-setup', 'mkfs.vfat', 'rmmod', 'pam_extrausers_update', 'insmod', 'ip6tables-restore', 'dump', 'mkswap', 'mount.fuse', 'mkfs.fat', 'lspcmcia', 'ifquery', 'ipmaddr', 'prime-switch', 'mke2fs', 'resolvconf', 'rarp', 'cgdisk', 'tc', 'capsh', 'rrestore', 'iwlist', 'iwevent', 'ntfsclone', 'dhclient-script', 'fsck.ext4', 'mkhomedir_helper', 'alsa', 'modprobe', 'mountall', 'xtables-multi', 'upstart-udev-bridge', 'iptunnel', 'crda', 'brltty', 'fsck.ext3', 'pam_extrausers_chkpwd', 'request-key', 'acpi_available', 'init', 'ldconfig.real', 'blkid', 'sm-notify', 'mkfs.cramfs', 'depmod', 'debugfs', 'restart', 'sulogin', 'upstart-file-bridge', 'gdisk', 'plymouthd', 'cfdisk', 'resize2fs', 'fsck.fat', 'ethtool', 'ip6tables', 'fdisk', 'showmount', 'sysctl', 'iptables', 'shutdown', 'modinfo', 'iw', 'switch_root', 'iwpriv', 'ldconfig', 'route', 'ctrlaltdel', 'upstart-dbus-bridge', 'losetup', 'fsck.ext2', 'fsck', 'mkdosfs', 'blkdiscard', 'fsck.cramfs', 'ureadahead', 'dhclient', 'badblocks', 'kbdrate', 'mkfs.ext3', 'initctl', 'mkfs.minix', 'prime-offload', 'rpcbind', 'osd_login', 'MAKEDEV', 'mkfs.ext4dev', 'create-uvm-dev-node', 'mount.ntfs-3g', 'fsck.ext4dev', 'fstab-decode', 'parted', 'mount.lowntfs-3g', 'iwgetid', 'mkfs.ext4', 'nameif', 'ip', 'wpa_supplicant', 'raw', 'setcap', 'shadowconfig', 'agetty', 'blockdev', 'upstart-socket-bridge', 'plipconfig', 'status', 'unix_update', 'u-d-c-print-pci-ids', 'pam_tally2', 'wipefs', 'fsck.minix', 'mkfs.msdos', 'ifconfig', 'slattach', 'umount.nfs4', 'runuser', 'dosfsck', 'e2image', 'mkfs.ext2'] ['ntfscmp', 'echo', 'tempfile', 'kmod', 'sync', 'sh', 'login', 'fgconsole', 'gunzip', 'mount', 'udevadm', 'sleep', 'gzip', 'lessfile', 'bzmore', 'ping6', 'open', 'bzcmp', 'ntfscluster', 'kbd_mode', 'df', 'fusermount', 'tailf', 'chown', 'mt', 'busybox', 'setfacl', 'ypdomainname', 'openvt', 'whiptail', 'which', 'zmore', 'bzip2recover', 'lsmod', 'setupcon', 'pwd', 'systemd-machine-id-setup', 'gzexe', 'findmnt', 'systemd-notify', 'fgrep', 'ntfsinfo', 'fuser', 'lowntfs-3g', 'loadkeys', 'setfont', 'netcat', 'run-parts', 'sh.distrib', 'efibootmgr', 'ntfsfallocate', 'date', 'zgrep', 'bzgrep', 'ed', 'bzcat', 'chacl', 'nc', 'netstat', 'ntfswipe', 'pidof', 'false', 'dnsdomainname', 'ntfs-3g.probe', 'cp', 'ntfs-3g', 'dash', 'bash', 'ntfs-3g.secaudit', 'keyctl', 'egrep', 'chmod', 'loginctl', 'ntfsmove', 'nano', 'lessecho', 'mountpoint', 'rnano', 'cat', 'systemd', 'hciconfig', 'mt-gnu', 'uname', 'ps', 'stty', 'zegrep', 'bzfgrep', 'ntfs-3g.usermap', 'systemctl', 'rbash', 'plymouth', 'bzegrep', 'more', 'su', 'lesspipe', 'ntfsls', 'rm', 'systemd-escape', 'static-sh', 'mv', 'kill', 'dumpkeys', 'bzless', 'vdir', 'systemd-tty-ask-password-agent', 'zfgrep', 'rmdir', 'tar', 'sed', 'zdiff', 'readlink', 'chgrp', 'touch', 'mkdir', 'ulockmgr_server', 'red', 'ln', 'journalctl', 'lesskey', 'systemd-tmpfiles', 'zcat', 'bunzip2', 'cpio', 'dir', 'networkctl', 'systemd-hwdb', 'nisdomainname', 'bzip2', 'zless', 'mktemp', 'systemd-inhibit', 'zcmp', 'unicode_start', 'systemd-ask-password', 'bzexe', 'hostname', 'grep', 'getfacl', 'ntfscat', 'znew', 'ip', 'less', 'ls', 'dd', 'zforce', 'ping', 'true', 'lsblk', 'ss', 'ntfstruncate', 'umount', 'bzdiff', 'domainname', 'wdctl', 'ntfsfix', 'uncompress', 'mknod', 'nc.openbsd', 'chvt', 'dmesg'] ['espdiff', 'gnome-mines', 'gnome-mahjongg', 'sol', 'gnome-sudoku'] [] Warning accessing /snap/bin gives errors: [Errno 2] No such file or directory: '/snap/bin' Warning accessing /home/dsu/Soft/Paraview/ParaView-5.5.0/bin gives errors: [Errno 2] No such file or directory: '/home/dsu/Soft/Paraview/ParaView-5.5.0/bin' ['mpeg2encode', 'visitprotocol', 'xml2cmake', 'makemili', 'text2polys', 'run_doxygen', 'frontendlauncher', 'xml2window', 'surfcomp', 'Doxyfile', 'xmltest', 'visit0000.session', 'time_annotation', 'visit_plugin', 'xmledit', 'xml2atts', 'curv3dprep', 'visit_transition', 'regen-ajp', 'visit_composite', 'visit', 'xml2plugin', 'xml2python', 'frontendlauncher.py', 'visitconvert', 'xml2avt', 'mkgrdbl', 'xml2info', 'xml2java', 'visit0000.session.gui'] ['codecov', 'tselect', 'icpc', 'compilervars.csh', 'xild', 'map_opts', 'gdb-ia', 'ifortvars.sh', 'ifortvars.csh', 'profdcg', 'ifort', 'proforder', 'compilervars.sh', 'gcore-ia', 'iccvars.sh', 'xiar', 'icc', 'iccvars.csh', 'profmerge', 'fpp'] Warning accessing /home/dsu/Soft/Paraview/ParaView-5.5.0/bin gives errors: [Errno 2] No such file or directory: '/home/dsu/Soft/Paraview/ParaView-5.5.0/bin' ['mpeg2encode', 'visitprotocol', 'xml2cmake', 'makemili', 'text2polys', 'run_doxygen', 'frontendlauncher', 'xml2window', 'surfcomp', 'Doxyfile', 'xmltest', 'visit0000.session', 'time_annotation', 'visit_plugin', 'xmledit', 'xml2atts', 'curv3dprep', 'visit_transition', 'regen-ajp', 'visit_composite', 'visit', 'xml2plugin', 'xml2python', 'frontendlauncher.py', 'visitconvert', 'xml2avt', 'mkgrdbl', 'xml2info', 'xml2java', 'visit0000.session.gui'] ['codecov', 'tselect', 'icpc', 'compilervars.csh', 'xild', 'map_opts', 'gdb-ia', 'ifortvars.sh', 'ifortvars.csh', 'profdcg', 'ifort', 'proforder', 'compilervars.sh', 'gcore-ia', 'iccvars.sh', 'xiar', 'icc', 'iccvars.csh', 'profmerge', 'fpp'] Path provided by --with-executables-search-path ['win32feutils.dll', 'win32fe.exe'] Checking for program /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/libtoolize...not found Checking for program /home/dsu/Soft/PETSc/petsc-3.10.5/linux-gnu-opt/bin/libtoolize...not found Checking for program /usr/local/sbin/libtoolize...not found Checking for program /usr/local/bin/libtoolize...not found Checking for program /usr/sbin/libtoolize...not found Checking for program /usr/bin/libtoolize...not found Checking for program /sbin/libtoolize...not found Checking for program /bin/libtoolize...not found Checking for program /usr/games/libtoolize...not found Checking for program /usr/local/games/libtoolize...not found Checking for program /snap/bin/libtoolize...not found Checking for program /home/dsu/Soft/Paraview/ParaView-5.5.0/bin/libtoolize...not found Checking for program /home/dsu/Soft/VisIt/visit2_13_0.linux-x86_64/bin/libtoolize...not found Checking for program /home/dsu/Soft/Intel/parallel_studio_2019/bin/libtoolize...not found Checking for program /home/dsu/Soft/Paraview/ParaView-5.5.0/bin/libtoolize...not found Checking for program /home/dsu/Soft/VisIt/visit2_13_0.linux-x86_64/bin/libtoolize...not found Checking for program /home/dsu/Soft/Intel/parallel_studio_2019/bin/libtoolize...not found Checking for program /home/dsu/Soft/PETSc/petsc-3.13.2/lib/petsc/bin/win32fe/libtoolize...not found Unable to find programs ['libtoolize'] providing listing of each search directory to help debug Path provided in Python program Path provided by default path [] ['mpichversion', 'h5unjam', 'h5perf', 'h5dump', 'mpic++', 'h5copy', 'mpiexec', 'h5import', 'mpirun', 'h5debug', 'gif2h5', 'h5repart', 'h5ls', 'hydra_nameserver', 'mpicxx', 'h5jam', 'ph5diff', 'h5redeploy', 'mpif90', 'h5mkgrp', 'h5pcc', 'h5perf_serial', 'h52gif', 'h5repack', 'mpivars', 'mpifort', 'mpif77', 'parkill', 'h5diff', 'mpiexec.hydra', 'hydra_persist', 'h5pfc', 'h5stat', 'hydra_pmi_proxy', 'mpicc'] [] ['mcc', 'cmpfillin', 'cgal_make_macosx_app', 'cgal_create_CMakeLists', 'ndmetis', 'gpmetis', 'deploytool', 'matlab', 'cgal_create_cmake_script', 'mbuild', 'm2gmetis', 'mex', 'mpmetis', 'graphchk'] ['grpconv', 'rpc.mountd', 'x2gocleansessions', 'su-to-root', 'cupsfilter', 'lpadmin', 'safe_finger', 'grpunconv', 'deluser', 'iconvconfig', 'update-passwd', 'rsyslogd', 'grub-mkconfig', 'tor-instance-create', 'dmidecode', 'dnsmasq', 'install-sgmlcatalog', 'dkms', 'NetworkManager', 'rtcwake', 'rpc.svcgssd', 'install-menu', 'update-icon-caches', 'nfsidmap', 'hddtemp', 'pppoeconf', 'nfnl_osf', 'update-alternatives', 'fdformat', 'laptop-detect', 'popcon-largest-unused', 'dpkg-preconfigure', 'logrotate', 'groupmod', 'invoke-rc.d', 'update-pciids', 'update-default-aspell', 'filefrag', 'create-cracklib-dict', 'kerneloops', 'cupsaccept', 'setvesablank', 'pwconv', 'zic', 'newusers', 'dpkg-reconfigure', 'ownership', 'pam_timestamp_check', 'dpkg-divert', 'useradd', 'popularity-contest', 'xfce4-kiosk-query', 'tcpdump', 'blkmapd', 'cupsctl', 'pppdump', 'pm-suspend-hybrid', 'sensors-detect', 'update-default-wordlist', 'nfsstat', 'saned', 'readprofile', 'cppw', 'update-java-alternatives', 'pppd', 'update-grub-gfxpayload', 'ModemManager', 'pam-auth-update', 'update-dictcommon-hunspell', 'cupsaddsmb', 'e4defrag', 'update-rc.d', 'update-info-dir', 'acpid', 'chpasswd', 'arp', 'usb_modeswitch', 'update-inetd', 'paperconfig', 'isadump', 'vigr', 'lpc', 'thermald', 'delgroup', 'vbetool', 'remove-default-ispell', 'tcpdchk', 'cpgr', 'select-default-ispell', 'rpcdebug', 'tarcat', 'getweb', 'usb_modeswitch_dispatcher', 'pwck', 'pm-hibernate', 'remove-shell', 'update-fonts-alias', 'service', 'alsa-info.sh', 'gss_clnt_send_err', 'rpc.idmapd', 'remove-default-wordlist', 'ippusbxd', 'cracklib-check', 'cracklib-format', 'tor', 'cups-genppdupdate', 'grub-probe', 'guest-account', 'irqbalance', 'avahi-daemon', 'cron', 'sshd', 'unity-greeter', 'rmt-dump', 'update-usbids', 'pwunconv', 'gss_destroy_creds', 'nrpe', 'addgnupghome', 'pm-powersave', 'apparmor_status', 'chat', 'nfsdcltrack', 'install-docs', 'update-gsfontmap', 'groupadd', 'cracklib-unpacker', 'visudo', 'update-grub2', 'exportfs', 'mklost+found', 'ip6tables-apply', 'add-shell', 'update-binfmts', 'rmt', 'locale-gen', 'select-default-wordlist', 'pptpsetup', 'update-default-ispell', 'grpck', 'rmt-tar', 'x2goshowblocks', 'nfsiostat', 'mkinitramfs', 'lpinfo', 'tcpd', 'ispell-autobuildhash', 'update-cracklib', 'gnome-menus-blacklist', 'x2golistsessions_root', 'update-ca-certificates', 'ufw', 'cupsd', 'aa-exec', 'cupsenable', 'lpmove', 'bluetoothd', 'aptd', 'aspell-autobuildhash', 'update-mime', 'start-statd', 'gconf-schemas', 'reject', 'grub-bios-setup', 'nologin', 'make-ssl-cert', 'update-grub', 'grub-macbless', 'usermod', 'ldattach', 'addgroup', 'alsactl', 'rpc.nfsd', 'pam_getenv', 'update-icon-caches.gtk2', 'uuidd', 'upgrade-from-grub-legacy', 'rtkitctl', 'mate-power-backlight-helper', 'update-dictcommon-aspell', 'vcstime', 'pppstats', 'applygnupgdefaults', 'pptp', 'update-xmlcatalog', 'aa-remove-unknown', 'grub-install', 'rpcinfo', 'vpddecode', 'validlocale', 'gparted', 'iucode_tool', 'adduser', 'tcpdmatch', 'accept', 'try-from', 'usbmuxd', 'grub-mkdevicemap', 'isaset', 'iio-sensor-proxy', 'tunelp', 'arpd', 'aa-status', 'rpc.gssd', 'mate-display-properties-install-systemwide', 'update-locale', 'and', 'dpkg-statoverride', 'cupsreject', 'tzconfig', 'gpartedbin', 'update-initramfs', 'update-mate-menu-x2go', 'grub-set-default', 'chgpasswd', 'update-fonts-dir', 'update-catalog', 'iptables-apply', 'anacron', 'toshsat1800-irdasetup', 'realm', 'update-fonts-scale', 'x2godbadmin', 'accessdb', 'vipw', 'cups-browsed', 'pppoe-discovery', 'userdel', 'e2freefrag', 'rfkill', 'grub-reboot', 'cracklib-packer', 'lightdm-session', 'pm-suspend', 'pppconfig', 'mountstats', 'genl', 'lightdm', 'chroot', 'cupsdisable', 'biosdecode', 'iucode-tool', 'avahi-autoipd', 'groupdel'] ['rcp', 'gem2.3', 'mate-session-inhibit', 'asan_symbolize-3.9', 'llvm-mc-3.8', 'foo2xqx', 'x2goruncommand', 'flipdiff', 'cinnamon-session-cinnamon2d', 'elfedit', 'c_rehash', 'monitor-sensor', 'host', 'pon', 'dbus-monitor', 'qdoc', 'hp-doctor', 'mclasserase', 'mkfontdir', 'dh_installmodules', 'x86_64-linux-gnu-ld', 'pbmtext', 'check-language-support', 'wall', 'flock', 'foo2hbpl2-wrapper', 'unzipsfx', 'qmlplugindump', 'etags', 'ld.bfd', 'sha384sum', 'rtstat', 'pilfile', 'arm2hpdl', 'llvm-dis-3.9', 'telnet.netkit', 'mpirun.openmpi', 'mlocate', 'syslinux-legacy', 'dh_suidregister', 'llvm-extract', 'llvm-nm', '7z', 'su-to-root', 'llvm-mc-3.9', 'scanimage', 'vi', 'pdfunite', 'ngettext', 'pnmpsnr', 'hp-scan', 'xfconf-query', 'updatedb.mlocate', 'pdftops', 'llvm-symbolizer-3.9', 'lowriter', 'mdeltree', 'lsb_release', 'hp-info', 'grub-mkrescue', 'busctl', 'foo2zjs-wrapper', 'nm-connection-editor', 'orte-dvm', 'setleds', 'x86_64-linux-gnu-readelf', 'last', 'pbmclean', 'gawk', 'xdg-open', 'ubuntu-support-status', 'ranlib', 'ruby', 'cpp-5', 'mdir', 'pdfimages', 'fitstopnm', 'icontopbm', 'dh_auto_test', 'po2debconf', 'intel_display_crc', 'gucharmap', 'gnome-calculator', 'activity-log-manager', 'compare', 'pnmtoxwd', 'mdel', 'min12xxw', 'system-config-printer-applet', 'routel', 'gfortran', 'cinnamon-session', 'pkcheck', 'w.procps', 'msd-locate-pointer', 'ppmflash', 'pbmtonokia', 'word-list-compress', 'qmlprofiler', 'mmd', 'brushtopbm', 'msgunfmt', 'gpg-zip', 'intel_panel_fitter', 'cinnamon-extension-tool', 'cups-calibrate', 'pcxtoppm', 'lsdiff', 'uic3', 'deja-dup', 'amuFormat.sh', 'ppmchange', 'gnome-terminal.wrapper', 'qmleasing', 'java', 'obj2yaml', 'pbmtoppa', 'tracepath6', 'dgscat-int32', 'whoopsie-preferences', 'rawtoppm', 'splitfont', 'hwloc-gather-topology', 'nmtui', 'showrgb', 'gkbd-keyboard-display', 'unexpand', 'caja-connect-server', 'emacs24-x', 'llvm-mc', 'apport-unpack', 'view', 'gsdj500', 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'grub-syslinux2cfg', 'atril', 'python3.5m', 'pamstretch', 'gconftool-2', 'ttfread', 'py3compile', 'pastebin', 'xgc', 'zipgrep', 'lispmtopgm', 'rgb3toppm', 'intel_reg_checker', 'ppmtopict', 'gpu-manager', 'lrelease', 'pgmcrater', 'dh_install', 'infocmp', 'scan-view-3.9', 'hbpldecode', 'fail2ban-regex', 'usb_printerid', 'gcc-nm', 'nad2bin', 'ppmtopj', 'qtdiag', 'gcr-viewer', 'x2goumount-session-mate', 'x86_64-linux-gnu-pkg-config', 'unity-control-center', 'mogrify-im6', 'pbmpage', 'ebrowse', 'dh_update_autotools_config', 'dh_auto_install', 'pdfdetach', 'xfce4-keyboard-settings', 'dbus-uuidgen', 'compose', 'ppmtoicr', 'hwloc-calc', 'ex'] ['dosfslabel', 'dumpe2fs', 'ntfsundelete', 'upstart-event-bridge', 'mkfs.bfs', 'iwspy', 'fsfreeze', 'apparmor_parser', 'ip6tables-save', 'findfs', 'mount.ntfs', 'telinit', 'restore', 'apm_available', 'reload', 'start', 'pccardctl', 'getpcaps', 'chcpu', 'stop', 'ntfslabel', 'killall5', 'upstart', 'get-quirk-options', 'udevadm', 'start-stop-daemon', 'key.dns_resolver', 'tune2fs', 'regdbdump', 'rtacct', 'halt', 'fsck.msdos', 'ifup', 'zramctl', 'rdump', 'swapoff', 'mkntfs', 'rtmon', 'installkernel', 'upstart-local-bridge', 'swapon', 'getcap', 'mntctl', 'mii-tool', 'getty', 'setvtrgb', 'fsck.nfs', 'runlevel', 'sfdisk', 'ntfscp', 'iptables-save', 'umount.udisks2', 'lsmod', 'e2fsck', 'mkfs.ntfs', 'on_ac_power', 'mkfs', 'fatlabel', 'e2undo', 'iwconfig', 'pivot_root', 'iptables-restore', 'hwclock', 'unix_chkpwd', 'mount.nfs4', 'sgdisk', 'poweroff', 'fixparts', 'mount.nfs', 'umount.nfs', 'logsave', 'tipc', 'rpc.statd', 'e2label', 'ifdown', 'isosize', 'wpa_action', 'swaplabel', 'reboot', 'partprobe', 'hdparm', 'fstrim', 'wpa_cli', 'pam_tally', 'ntfsresize', 'bridge', 'fsck.vfat', 'brltty-setup', 'mkfs.vfat', 'rmmod', 'pam_extrausers_update', 'insmod', 'ip6tables-restore', 'dump', 'mkswap', 'mount.fuse', 'mkfs.fat', 'lspcmcia', 'ifquery', 'ipmaddr', 'prime-switch', 'mke2fs', 'resolvconf', 'rarp', 'cgdisk', 'tc', 'capsh', 'rrestore', 'iwlist', 'iwevent', 'ntfsclone', 'dhclient-script', 'fsck.ext4', 'mkhomedir_helper', 'alsa', 'modprobe', 'mountall', 'xtables-multi', 'upstart-udev-bridge', 'iptunnel', 'crda', 'brltty', 'fsck.ext3', 'pam_extrausers_chkpwd', 'request-key', 'acpi_available', 'init', 'ldconfig.real', 'blkid', 'sm-notify', 'mkfs.cramfs', 'depmod', 'debugfs', 'restart', 'sulogin', 'upstart-file-bridge', 'gdisk', 'plymouthd', 'cfdisk', 'resize2fs', 'fsck.fat', 'ethtool', 'ip6tables', 'fdisk', 'showmount', 'sysctl', 'iptables', 'shutdown', 'modinfo', 'iw', 'switch_root', 'iwpriv', 'ldconfig', 'route', 'ctrlaltdel', 'upstart-dbus-bridge', 'losetup', 'fsck.ext2', 'fsck', 'mkdosfs', 'blkdiscard', 'fsck.cramfs', 'ureadahead', 'dhclient', 'badblocks', 'kbdrate', 'mkfs.ext3', 'initctl', 'mkfs.minix', 'prime-offload', 'rpcbind', 'osd_login', 'MAKEDEV', 'mkfs.ext4dev', 'create-uvm-dev-node', 'mount.ntfs-3g', 'fsck.ext4dev', 'fstab-decode', 'parted', 'mount.lowntfs-3g', 'iwgetid', 'mkfs.ext4', 'nameif', 'ip', 'wpa_supplicant', 'raw', 'setcap', 'shadowconfig', 'agetty', 'blockdev', 'upstart-socket-bridge', 'plipconfig', 'status', 'unix_update', 'u-d-c-print-pci-ids', 'pam_tally2', 'wipefs', 'fsck.minix', 'mkfs.msdos', 'ifconfig', 'slattach', 'umount.nfs4', 'runuser', 'dosfsck', 'e2image', 'mkfs.ext2'] ['ntfscmp', 'echo', 'tempfile', 'kmod', 'sync', 'sh', 'login', 'fgconsole', 'gunzip', 'mount', 'udevadm', 'sleep', 'gzip', 'lessfile', 'bzmore', 'ping6', 'open', 'bzcmp', 'ntfscluster', 'kbd_mode', 'df', 'fusermount', 'tailf', 'chown', 'mt', 'busybox', 'setfacl', 'ypdomainname', 'openvt', 'whiptail', 'which', 'zmore', 'bzip2recover', 'lsmod', 'setupcon', 'pwd', 'systemd-machine-id-setup', 'gzexe', 'findmnt', 'systemd-notify', 'fgrep', 'ntfsinfo', 'fuser', 'lowntfs-3g', 'loadkeys', 'setfont', 'netcat', 'run-parts', 'sh.distrib', 'efibootmgr', 'ntfsfallocate', 'date', 'zgrep', 'bzgrep', 'ed', 'bzcat', 'chacl', 'nc', 'netstat', 'ntfswipe', 'pidof', 'false', 'dnsdomainname', 'ntfs-3g.probe', 'cp', 'ntfs-3g', 'dash', 'bash', 'ntfs-3g.secaudit', 'keyctl', 'egrep', 'chmod', 'loginctl', 'ntfsmove', 'nano', 'lessecho', 'mountpoint', 'rnano', 'cat', 'systemd', 'hciconfig', 'mt-gnu', 'uname', 'ps', 'stty', 'zegrep', 'bzfgrep', 'ntfs-3g.usermap', 'systemctl', 'rbash', 'plymouth', 'bzegrep', 'more', 'su', 'lesspipe', 'ntfsls', 'rm', 'systemd-escape', 'static-sh', 'mv', 'kill', 'dumpkeys', 'bzless', 'vdir', 'systemd-tty-ask-password-agent', 'zfgrep', 'rmdir', 'tar', 'sed', 'zdiff', 'readlink', 'chgrp', 'touch', 'mkdir', 'ulockmgr_server', 'red', 'ln', 'journalctl', 'lesskey', 'systemd-tmpfiles', 'zcat', 'bunzip2', 'cpio', 'dir', 'networkctl', 'systemd-hwdb', 'nisdomainname', 'bzip2', 'zless', 'mktemp', 'systemd-inhibit', 'zcmp', 'unicode_start', 'systemd-ask-password', 'bzexe', 'hostname', 'grep', 'getfacl', 'ntfscat', 'znew', 'ip', 'less', 'ls', 'dd', 'zforce', 'ping', 'true', 'lsblk', 'ss', 'ntfstruncate', 'umount', 'bzdiff', 'domainname', 'wdctl', 'ntfsfix', 'uncompress', 'mknod', 'nc.openbsd', 'chvt', 'dmesg'] ['espdiff', 'gnome-mines', 'gnome-mahjongg', 'sol', 'gnome-sudoku'] [] Warning accessing /snap/bin gives errors: [Errno 2] No such file or directory: '/snap/bin' Warning accessing /home/dsu/Soft/Paraview/ParaView-5.5.0/bin gives errors: [Errno 2] No such file or directory: '/home/dsu/Soft/Paraview/ParaView-5.5.0/bin' ['mpeg2encode', 'visitprotocol', 'xml2cmake', 'makemili', 'text2polys', 'run_doxygen', 'frontendlauncher', 'xml2window', 'surfcomp', 'Doxyfile', 'xmltest', 'visit0000.session', 'time_annotation', 'visit_plugin', 'xmledit', 'xml2atts', 'curv3dprep', 'visit_transition', 'regen-ajp', 'visit_composite', 'visit', 'xml2plugin', 'xml2python', 'frontendlauncher.py', 'visitconvert', 'xml2avt', 'mkgrdbl', 'xml2info', 'xml2java', 'visit0000.session.gui'] ['codecov', 'tselect', 'icpc', 'compilervars.csh', 'xild', 'map_opts', 'gdb-ia', 'ifortvars.sh', 'ifortvars.csh', 'profdcg', 'ifort', 'proforder', 'compilervars.sh', 'gcore-ia', 'iccvars.sh', 'xiar', 'icc', 'iccvars.csh', 'profmerge', 'fpp'] Warning accessing /home/dsu/Soft/Paraview/ParaView-5.5.0/bin gives errors: [Errno 2] No such file or directory: '/home/dsu/Soft/Paraview/ParaView-5.5.0/bin' ['mpeg2encode', 'visitprotocol', 'xml2cmake', 'makemili', 'text2polys', 'run_doxygen', 'frontendlauncher', 'xml2window', 'surfcomp', 'Doxyfile', 'xmltest', 'visit0000.session', 'time_annotation', 'visit_plugin', 'xmledit', 'xml2atts', 'curv3dprep', 'visit_transition', 'regen-ajp', 'visit_composite', 'visit', 'xml2plugin', 'xml2python', 'frontendlauncher.py', 'visitconvert', 'xml2avt', 'mkgrdbl', 'xml2info', 'xml2java', 'visit0000.session.gui'] ['codecov', 'tselect', 'icpc', 'compilervars.csh', 'xild', 'map_opts', 'gdb-ia', 'ifortvars.sh', 'ifortvars.csh', 'profdcg', 'ifort', 'proforder', 'compilervars.sh', 'gcore-ia', 'iccvars.sh', 'xiar', 'icc', 'iccvars.csh', 'profmerge', 'fpp'] Path provided by --with-executables-search-path ['win32feutils.dll', 'win32fe.exe'] Checking for program /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/glibtoolize...not found Checking for program /home/dsu/Soft/PETSc/petsc-3.10.5/linux-gnu-opt/bin/glibtoolize...not found Checking for program /usr/local/sbin/glibtoolize...not found Checking for program /usr/local/bin/glibtoolize...not found Checking for program /usr/sbin/glibtoolize...not found Checking for program /usr/bin/glibtoolize...not found Checking for program /sbin/glibtoolize...not found Checking for program /bin/glibtoolize...not found Checking for program /usr/games/glibtoolize...not found Checking for program /usr/local/games/glibtoolize...not found Checking for program /snap/bin/glibtoolize...not found Checking for program /home/dsu/Soft/Paraview/ParaView-5.5.0/bin/glibtoolize...not found Checking for program /home/dsu/Soft/VisIt/visit2_13_0.linux-x86_64/bin/glibtoolize...not found Checking for program /home/dsu/Soft/Intel/parallel_studio_2019/bin/glibtoolize...not found Checking for program /home/dsu/Soft/Paraview/ParaView-5.5.0/bin/glibtoolize...not found Checking for program /home/dsu/Soft/VisIt/visit2_13_0.linux-x86_64/bin/glibtoolize...not found Checking for program /home/dsu/Soft/Intel/parallel_studio_2019/bin/glibtoolize...not found Checking for program /home/dsu/Soft/PETSc/petsc-3.13.2/lib/petsc/bin/win32fe/glibtoolize...not found Unable to find programs ['glibtoolize'] providing listing of each search directory to help debug Path provided in Python program Path provided by default path [] ['mpichversion', 'h5unjam', 'h5perf', 'h5dump', 'mpic++', 'h5copy', 'mpiexec', 'h5import', 'mpirun', 'h5debug', 'gif2h5', 'h5repart', 'h5ls', 'hydra_nameserver', 'mpicxx', 'h5jam', 'ph5diff', 'h5redeploy', 'mpif90', 'h5mkgrp', 'h5pcc', 'h5perf_serial', 'h52gif', 'h5repack', 'mpivars', 'mpifort', 'mpif77', 'parkill', 'h5diff', 'mpiexec.hydra', 'hydra_persist', 'h5pfc', 'h5stat', 'hydra_pmi_proxy', 'mpicc'] [] ['mcc', 'cmpfillin', 'cgal_make_macosx_app', 'cgal_create_CMakeLists', 'ndmetis', 'gpmetis', 'deploytool', 'matlab', 'cgal_create_cmake_script', 'mbuild', 'm2gmetis', 'mex', 'mpmetis', 'graphchk'] ['grpconv', 'rpc.mountd', 'x2gocleansessions', 'su-to-root', 'cupsfilter', 'lpadmin', 'safe_finger', 'grpunconv', 'deluser', 'iconvconfig', 'update-passwd', 'rsyslogd', 'grub-mkconfig', 'tor-instance-create', 'dmidecode', 'dnsmasq', 'install-sgmlcatalog', 'dkms', 'NetworkManager', 'rtcwake', 'rpc.svcgssd', 'install-menu', 'update-icon-caches', 'nfsidmap', 'hddtemp', 'pppoeconf', 'nfnl_osf', 'update-alternatives', 'fdformat', 'laptop-detect', 'popcon-largest-unused', 'dpkg-preconfigure', 'logrotate', 'groupmod', 'invoke-rc.d', 'update-pciids', 'update-default-aspell', 'filefrag', 'create-cracklib-dict', 'kerneloops', 'cupsaccept', 'setvesablank', 'pwconv', 'zic', 'newusers', 'dpkg-reconfigure', 'ownership', 'pam_timestamp_check', 'dpkg-divert', 'useradd', 'popularity-contest', 'xfce4-kiosk-query', 'tcpdump', 'blkmapd', 'cupsctl', 'pppdump', 'pm-suspend-hybrid', 'sensors-detect', 'update-default-wordlist', 'nfsstat', 'saned', 'readprofile', 'cppw', 'update-java-alternatives', 'pppd', 'update-grub-gfxpayload', 'ModemManager', 'pam-auth-update', 'update-dictcommon-hunspell', 'cupsaddsmb', 'e4defrag', 'update-rc.d', 'update-info-dir', 'acpid', 'chpasswd', 'arp', 'usb_modeswitch', 'update-inetd', 'paperconfig', 'isadump', 'vigr', 'lpc', 'thermald', 'delgroup', 'vbetool', 'remove-default-ispell', 'tcpdchk', 'cpgr', 'select-default-ispell', 'rpcdebug', 'tarcat', 'getweb', 'usb_modeswitch_dispatcher', 'pwck', 'pm-hibernate', 'remove-shell', 'update-fonts-alias', 'service', 'alsa-info.sh', 'gss_clnt_send_err', 'rpc.idmapd', 'remove-default-wordlist', 'ippusbxd', 'cracklib-check', 'cracklib-format', 'tor', 'cups-genppdupdate', 'grub-probe', 'guest-account', 'irqbalance', 'avahi-daemon', 'cron', 'sshd', 'unity-greeter', 'rmt-dump', 'update-usbids', 'pwunconv', 'gss_destroy_creds', 'nrpe', 'addgnupghome', 'pm-powersave', 'apparmor_status', 'chat', 'nfsdcltrack', 'install-docs', 'update-gsfontmap', 'groupadd', 'cracklib-unpacker', 'visudo', 'update-grub2', 'exportfs', 'mklost+found', 'ip6tables-apply', 'add-shell', 'update-binfmts', 'rmt', 'locale-gen', 'select-default-wordlist', 'pptpsetup', 'update-default-ispell', 'grpck', 'rmt-tar', 'x2goshowblocks', 'nfsiostat', 'mkinitramfs', 'lpinfo', 'tcpd', 'ispell-autobuildhash', 'update-cracklib', 'gnome-menus-blacklist', 'x2golistsessions_root', 'update-ca-certificates', 'ufw', 'cupsd', 'aa-exec', 'cupsenable', 'lpmove', 'bluetoothd', 'aptd', 'aspell-autobuildhash', 'update-mime', 'start-statd', 'gconf-schemas', 'reject', 'grub-bios-setup', 'nologin', 'make-ssl-cert', 'update-grub', 'grub-macbless', 'usermod', 'ldattach', 'addgroup', 'alsactl', 'rpc.nfsd', 'pam_getenv', 'update-icon-caches.gtk2', 'uuidd', 'upgrade-from-grub-legacy', 'rtkitctl', 'mate-power-backlight-helper', 'update-dictcommon-aspell', 'vcstime', 'pppstats', 'applygnupgdefaults', 'pptp', 'update-xmlcatalog', 'aa-remove-unknown', 'grub-install', 'rpcinfo', 'vpddecode', 'validlocale', 'gparted', 'iucode_tool', 'adduser', 'tcpdmatch', 'accept', 'try-from', 'usbmuxd', 'grub-mkdevicemap', 'isaset', 'iio-sensor-proxy', 'tunelp', 'arpd', 'aa-status', 'rpc.gssd', 'mate-display-properties-install-systemwide', 'update-locale', 'and', 'dpkg-statoverride', 'cupsreject', 'tzconfig', 'gpartedbin', 'update-initramfs', 'update-mate-menu-x2go', 'grub-set-default', 'chgpasswd', 'update-fonts-dir', 'update-catalog', 'iptables-apply', 'anacron', 'toshsat1800-irdasetup', 'realm', 'update-fonts-scale', 'x2godbadmin', 'accessdb', 'vipw', 'cups-browsed', 'pppoe-discovery', 'userdel', 'e2freefrag', 'rfkill', 'grub-reboot', 'cracklib-packer', 'lightdm-session', 'pm-suspend', 'pppconfig', 'mountstats', 'genl', 'lightdm', 'chroot', 'cupsdisable', 'biosdecode', 'iucode-tool', 'avahi-autoipd', 'groupdel'] ['rcp', 'gem2.3', 'mate-session-inhibit', 'asan_symbolize-3.9', 'llvm-mc-3.8', 'foo2xqx', 'x2goruncommand', 'flipdiff', 'cinnamon-session-cinnamon2d', 'elfedit', 'c_rehash', 'monitor-sensor', 'host', 'pon', 'dbus-monitor', 'qdoc', 'hp-doctor', 'mclasserase', 'mkfontdir', 'dh_installmodules', 'x86_64-linux-gnu-ld', 'pbmtext', 'check-language-support', 'wall', 'flock', 'foo2hbpl2-wrapper', 'unzipsfx', 'qmlplugindump', 'etags', 'ld.bfd', 'sha384sum', 'rtstat', 'pilfile', 'arm2hpdl', 'llvm-dis-3.9', 'telnet.netkit', 'mpirun.openmpi', 'mlocate', 'syslinux-legacy', 'dh_suidregister', 'llvm-extract', 'llvm-nm', '7z', 'su-to-root', 'llvm-mc-3.9', 'scanimage', 'vi', 'pdfunite', 'ngettext', 'pnmpsnr', 'hp-scan', 'xfconf-query', 'updatedb.mlocate', 'pdftops', 'llvm-symbolizer-3.9', 'lowriter', 'mdeltree', 'lsb_release', 'hp-info', 'grub-mkrescue', 'busctl', 'foo2zjs-wrapper', 'nm-connection-editor', 'orte-dvm', 'setleds', 'x86_64-linux-gnu-readelf', 'last', 'pbmclean', 'gawk', 'xdg-open', 'ubuntu-support-status', 'ranlib', 'ruby', 'cpp-5', 'mdir', 'pdfimages', 'fitstopnm', 'icontopbm', 'dh_auto_test', 'po2debconf', 'intel_display_crc', 'gucharmap', 'gnome-calculator', 'activity-log-manager', 'compare', 'pnmtoxwd', 'mdel', 'min12xxw', 'system-config-printer-applet', 'routel', 'gfortran', 'cinnamon-session', 'pkcheck', 'w.procps', 'msd-locate-pointer', 'ppmflash', 'pbmtonokia', 'word-list-compress', 'qmlprofiler', 'mmd', 'brushtopbm', 'msgunfmt', 'gpg-zip', 'intel_panel_fitter', 'cinnamon-extension-tool', 'cups-calibrate', 'pcxtoppm', 'lsdiff', 'uic3', 'deja-dup', 'amuFormat.sh', 'ppmchange', 'gnome-terminal.wrapper', 'qmleasing', 'java', 'obj2yaml', 'pbmtoppa', 'tracepath6', 'dgscat-int32', 'whoopsie-preferences', 'rawtoppm', 'splitfont', 'hwloc-gather-topology', 'nmtui', 'showrgb', 'gkbd-keyboard-display', 'unexpand', 'caja-connect-server', 'emacs24-x', 'llvm-mc', 'apport-unpack', 'view', 'gsdj500', 'ompi-top', 'ppmtoyuvsplit', 'clang-apply-replacements-3.9', 'mate-volume-control-applet', 'grog', 'x86_64-linux-gnu-gcc-ar', 'rpmverify', 'pnmsmooth', 'intel_framebuffer_dump', 'ld.gold', 'mate-appearance-properties', 'llvm-c-test-3.8', 'msgfmt', 'dh_icons', 'msggrep', 'yelp', 'apt-cache', 'llvm-nm-3.9', 'ppmspread', 'llvm-readobj-3.9', 'hcitool', 'llvm-dsymutil-3.9', 'unattended-upgrades', 'dropbox', 'mate-session', 'ppmfade', 'mate-search-tool', 'whereis', 'aplay', 'llc', 'pbmto10x', 'ftp', 'pnmcat', 'pnmtotiff', 'systemd-cat', 'grub-mklayout', 'lnstat', 'pbmtoatk', 'hp-pkservice', 'cinnamon-session-cinnamon', 'pg', 'deja-dup-preferences', 'csplit', 'llvm-dwarfdump', 'users', 'llvm-bcanalyzer-3.9', 'lwp-request', 'write', 'rlogin', 'pdf2dsc', 'intel_lid', 'dbus-run-session', 'gvfs-ls', 'pwgen', 'pgmtopbm', 'udisksctl', 'msgfilter', 'env', 'pstruct', 'gslj', 'glxinfo', 'bluetooth-sendto', 'xedid', 'intel-gen4disasm', 'ppmtopcx', 'mate-about', 'renice', 'rpmspec', 'hp-clean', 'pgmnorm', 'msginit', 'unity-webapps-runner', 'fail2ban-server', 'install-menu', 'f77', 'x2gofm', 'xlsfonts', 'snapctl', 'gsnd', 'xfce4-panel', 'gettext.sh', 'pgmtoppm', 'ppmtotga', 'xedit', 'mpiexec.openmpi', 'x86_64-linux-gnu-ld.bfd', 'rpcgen', 'lzcat', 'wpa_passphrase', 'dh_installppp', 'dpkg-source', 'ppmhist', 'google-chrome', 'llvm-config-3.8', 'pacat', 'mmount', 'verify-uselistorder-3.8', 'x86_64-linux-gnu-cpp', 'gpasswd', 'gst-device-monitor-1.0', 'bmptoppm', 'dgscat', 'obj2yaml-3.9', 'updatedb', 'x86_64-linux-gnu-gcov', 'xditview', 'pbmtopi3', 'printerbanner', 'recountdiff', 'gcc', 'shuf', 'llvm-lib-3.8', 'dh_testroot', 'ppmdist', 'localectl', 'cinnamon-file-dialog', 'from', 'intel_display_poller', 'xfwm4-settings', 'lpr', 'mate-mouse-properties', 'hp-plugin-ubuntu', 'iptables-xml', 'x86_64-linux-gnu-elfedit', 'dh_builddeb', 'eqn', 'resize', 'cinnamon-looking-glass', 'pamoil', 'x86_64-linux-gnu-c++filt', 'opt-3.9', 'update-alternatives', 'gnome-screenshot', 'anytopnm', 'alsabat', 'tap2rpm', 'arecord', 'lzfgrep', 'psfstriptable', 'llvm-size', 'dbus-cleanup-sockets', 'gatttool', 'pbmpscale', 'clhsdb', 'llvm-ranlib', 'llvm-tblgen', 'test', 'svnauthz-validate', 'libwacom-list-local-devices', 'ms_print', 'orbd', 'thunar', 'llvm-cxxdump-3.9', 'pnmpad', 'gtbl', 'llvm-link-3.9', 'ibus-daemon', 'savelog', 'llvm-cov-3.9', 'dpkg-gencontrol', 'cupstestdsc', 'clear_console', 'grub-mkrelpath', 'dehtmldiff', 'mkfontscale', 'c-index-test-3.9', 'nemo-connect-server', 'llc-3.8', 'mate-wm', 'engrampa', 'mate-system-monitor', 'infotocap', 'pbmtog3', 'pamon', 'pnmtojpeg', 'speech-dispatcher', 'lpoptions', 'thunar-volman', 'dgmap', 'xfontsel', 'xconsole', 'yes', 'x2gocmdexitmessage', 'atril-previewer', 'lessfile', 'x2goversion', 'conjure-im6', 'apt-key', 'gnome-system-log-pkexec', 'mate-keyboard-properties', 'nvidia-cuda-mps-server', 'grub-mount', 'bdftruncate', 'intel_gpu_top', 'aplaymidi', 'mtype', 'ssh-import-id-gh', 'x2goumount-session', 'opt-3.8', 'jedit', 'intel_stepping', 'lzgrep', 'addpart', 'flex', 'gs', 'xscreensaver-getimage-video', 'grepdiff', 'xwud', 'xdg-screensaver', 'lupdate', 'mate-font-viewer', 'thunar-volman-settings', 'xdg-desktop-icon', 'gapplication', 'dgscat-int64', 'getent', 'apt-ftparchive', 'xzdiff', 'sane-find-scanner', 'cinnamon-slideshow', 'gcalccmd', 'update-desktop-database', 'apport-bug', 'foo2zjs', 'svn', 'ompi-ps', 'ppmtoilbm', 'ppmquant', 'piconv', 'unshare', 'kerneloops-submit', 'vstp', 'browse', 'rpmkeys', 'foo2hp', 'ubuntu-webapps-update-index', 'mpiexec', 'gvfs-move', 'gist-paste', 'pygettext2.7', 'esc-m', 'whois', 'fakeroot', 'clang-3.9', 'ompi-server', 'setterm', 'linux-version', 'bootctl', 'fc-validate', 'pnmtosgi', 'msgcmp', 'clang-query-3.9', 'x2golistdesktops', 'pasuspender', 'ico', 'nvidia-xconfig', 'resizecons', 'foo2hbpl2', 'debconf-apt-progress', 'pilconvert', 'pnmtotiffcmyk', 'mbadblocks', 'xfsinfo', 'systemd-analyze', 'aspell', 'gnome-keyring', 'sotruss', 'dh_makeshlibs', 'pinentry-x11', 'convert', 'intel_backlight', 'llvm-ar-3.9', 'transset', 'intel_watermark', 'cg_annotate', 'apport-collect', 'wish', 'pluma', 'xflock4', 'gnome-software', 'uuidgen', 'mate-session-properties', 'unity-settings-daemon', 'git-upload-archive', 'xscreensaver-getimage-file', 'g++-5', 't1disasm', 'groups', 'gprof', 'ppmtompeg', 'xfce4-appfinder', 'pic', 'tail', 'pycompile', 'vino-preferences', 'apropos', 'dh_installchangelogs', 'conch', 'ssh-agent', 'lastlog', 'pnmdepth', 'eject', 'libnetcfg', 'lscpu', 'cmpfillin', 'qmlmin', 'sensible-editor', 'hp-align', 'mate-window-properties', 'systemd-stdio-bridge', 'display-im6', 'startxfce4', 'lwp-download', 'irb', 'qmltestrunner', 'qhelpconverter', 'ppmdither', 'scp', 'llvm-extract-3.9', 'llvm-nm-3.8', 'gst-install', 'mkmanifest', 'pilfile.py', 'orca-dm-wrapper', 'pydoc2.7', 'md5sum.textutils', 'hostnamectl', 'prezip', 'rdoc2.3', 'marco-window-demo', 'pnmsplit', 'pdb3.5', 'fonttosfnt', 'smproxy', 'x86_64-linux-gnu-addr2line', 'mpirun', 'atobm', 'ispell-wrapper', 'foo2hiperc', 'git', 'vino-passwd', 'zeitgeist-datahub', 'bioradtopgm', 'dpkg-buildpackage', 'cpan5.22-x86_64-linux-gnu', 'mpartition', 'pvrenderserver', 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'lintian-lab-tool', 'pjtoppm', 'pvpython', 'c2ph', 'arping', 'psfgettable', 'oakdecode', 'sort', 'tor-gencert', 'localedef', 'ppmtoneo', 'pm-is-supported', 'scriptreplay', 'svnlook', 'g3topbm', 'as', 'pnmcomp', 'fold', 'xxd', 'x2gofeaturelist', 'xzcat', 'python3', 'timedatectl', 'captoinfo', 'im-config', 'dh_installdirs', 'pgrep', 'macptopbm', 'keytool', 'orted', 'cal', 'dirmngr-client', 'clang-check-3.9', 'dgscat-long', 'ucs2any', 'marco-message', 'lldb-argdumper-3.9', 'chardetect', 'ldd', 'soffice', 'editor', 'mtr', 'credentials-preferences', 'macho-dump', 'msgen', 'llvm-stress-3.8', 'x2gosuspend-session', 'toe', 'dbus-update-activation-environment', 'xcmsdb', 'pdf2ps', 'killall', 'rename', 'vglclient', 'w', 'qmllint', 'intel_gpu_abrt', 'gvfs-copy', 'dgtst-long', 'gdialog', 'pbmtoepsi', 'viewer', 'pyhtmlizer', 'yaml2obj-3.8', 'cinnamon2d', 'sha1sum', 'rdoc', 'cd-iccdump', 'enhancer.py', 'pnmenlarge', 'xzgrep', 'ppmtojpeg', 'vglconnect', 'make-first-existing-target', 'pamcut', 'gstreamer-codec-install', 'xset', 'pnmfile', 'xdg-user-dirs-gtk-update', 'gdb', 'gnome-text-editor', 'gettextize', 'grotty', 'filterdiff', 'ibus-table-createdb', 'dpkg-log-summary', 'x2gobasepath', 'ssh-keygen', 'gnome-screensaver', 'brltty-ttb', 'lesskey', 'resizepart', 'llvm-objdump', 'clang-tblgen-3.9', 'palmtopnm', 'xfce4-session-logout', 'editdiff', 'pvtkpython', 'lstopo', 'llvm-ar-3.8', 'pftp', 'xkeystone', 'dpkg-maintscript-helper', 'zipcloak', 'dbus-send', 'hp-probe', 'plog', 'rctest', 'gpic', 'transicc', 'vglconfig', 'kmodsign', 'llvm-dis', 'llvm-ar', 'tsort', 'update-menus', 'gnome-terminal.real', 'llvm-profdata-3.8', 'pkttyagent', 'gsettings', 'streamer', 'lzma', 'podebconf-report-po', 'see', 'hp-setup', 'linux-check-removal', 'join', 'pnmindex', 'vgdb', 'ppmtopi1', 'crontab', 'mousetweaks', 'giftopnm', 'qmlscene', 'umax_pp', 'orte-submit', 'tbl', 'pstree', 'hardening-check', 'pod2html', 'grub-script-check', 'addr2line', 'cd-create-profile', 'btmon', 'dpkg-parsechangelog', 'logger', 'mtrace', 'uniq', 'gdb-add-index', 'compare-im6', 'ppmcolors', 'avahi-set-host-name', 'xdiagnose-pkexec', 'dh_compress', 'ppmtowinicon', 'llvm-mcmarkup-3.9', 'pager', 'simple-scan', 'rview', 'pfbtopfa', 'rasttopnm', 'pnmscalefixed', 'webapp-container-hook', 'cinnamon-settings', 'tload', 'gnome-keyring-3', 'gslp', 'torsocks', 'glxdemo', 'helpztags', 'designer', 'dh_installwm', 'ffmpegthumbnailer', 'plainbox-qml-shell', 'dirname', 'amixer', 'mpmetis', 'gnome-disk-image-mounter', 'fc-scan', 'mdatopbm', 'dh_auto_clean', 'paplay', 'gnome-session-properties', 'pgmtolispm', 'file', 'yuvtoppm', 'hwloc-assembler', 'dh_auto_build', 'llvm-symbolizer-3.8', 'isdv4-serial-debugger', 'xpmtoppm', 'xsubpp', 'plainbox-trusted-launcher-1', 'xclipboard', 'unsquashfs', 'xdg-user-dirs-update', 'f95', 'qdbuscpp2xml', 'gnome-calendar', 'dgpart-int32', 'cinnamon-settings-daemon', 'pdb3', 'intel_gtt', 'usb-devices', 'ssh-keyscan', 'modularize-3.9', 'mate-screensaver', 'nproc', 'editres', 'spctoppm', 'cinnamon-settings-users', 'paperconf', 'pygettext3', 'gvfs-tree', 'printf', 'avahi-resolve-host-name', 'charmap', 'manhole', 'x86_64-linux-gnu-ld.gold', 'xvidtune', 'msgconv', 'x-www-browser', 'runcon', 'lslogins', 't1mac', 'kbxutil', 'gvfs-trash', 'cinnamon-screensaver-lock-dialog', 'x86_64-linux-gnu-strip', 'xfce4-appearance-settings', 'luit', 'linux-update-symlinks', 'zipdetails', 'llvm-diff', 'foo2qpdl', 'dgpart-int64', 'qmlviewer', 'debconf-escape', 'unlzma', 'rletopnm', 'llvm-bcanalyzer-3.8', 'xsetmode', 'llvm-mcmarkup-3.8', 'gst-inspect-1.0', 'x86_64-linux-gnu-ranlib', 'peekfd', 'dpkg-vendor', 'tz_convert', 'Xorg', 'gtk-update-icon-cache-3.0', 'gnome-www-browser', 'pdftocairo', 'msgexec', 'pnmnlfilt', 'rawtopgm', 'nm', 'pnmmontage', 'seahorse', 'update-manager', 'dh_lintian', 'llvm-diff-3.9', 'pkill', 'llvm-split-3.9', 'llvm-size-3.9', 'sudo', 'troff', 'python3m', 'pstopnm', 'pngtopnm', 'x86_64-linux-gnu-gprof', 'pgmenhance', 'erb', 'gvfs-rename', 'gnome-control-center', 'vtkWrapPython-6.2', 'column', 'mate-about-me', 'X', 'hwloc-info', 'id', 'mate-system-log', 'dh_installudev', 'printer-profile', 'x2gofeature', 'mk_modmap', 'startx', 'lldb-server-3.9', 'file2brl', 'strip', 'dh_autotools-dev_restoreconfig', 'lastb', 'gvfs-cat', 'pinentry', 'gksu', 'ppmtopuzz', 'pnmconvol', 'ssh-import-id-lp', 'pilprint', 'pnmtofiasco', 'dpkg-statoverride', 'llvm-cov-3.8', 'pbmmake', 'software-properties-gtk', 'intel-gpu-overlay', 'compiz-decorator', 'enchant-lsmod', 'i686-linux-gnu-pkg-config', 'syndaemon', 'dh_prep', 'psfxtable', 'libreoffice', 'flex++', 'apt', 'caja-file-management-properties', 'intel-gen4asm', 'emacs24', 'py3clean', 'btattach', 'systemd-cgls', 'signond', 'prlimit', 'setarch', 'lorder', 'gvfs-less', 'lldb-3.9.1-3.9', 'sg', 'cautious-launcher', 'policytool', 'prime-supported', 'qpdldecode', 'pygettext3.5', 'onboard-settings', 'pamfile', 'setsid', 'crc32', 'x86_64-linux-gnu-gcc-ranlib', 'whoami', 'mawk', 'llvm-profdata-3.9', 'ompi_info', 'im-launch', 'ubuntu-drivers', 'gparted-pkexec', 'install', 'unattended-upgrade', 'dgmap-int32', 'dpkg-buildflags', 'dh_movefiles', 'pnminterp', 'google-chrome-stable', 'print', 'pl2pm', 'xscreensaver-demo', 'llvm-as-3.8', 'hipstopgm', 'svnfsfs', 'pbmtoybm', 'encguess', 'svnmucc', 'x2gocaja', 'getfacl', 'llvm-lib-3.9', 'mzip', 'ppmtogif', 'upload-system-info', 'mscompress', 'qmlimportscanner', 'intel_l3_parity', 'shred', 'lintian', 'ompi-clean', 'lp_solve', 'update-notifier', 'dh_clean', 'dh_auto_configure', 'mate-thumbnail-font', 'dh_strip_nondeterminism', 'time', 'vglgenkey', 'firefox', 'grub-menulst2cfg', 'identify', 'snap', 'pnmremap', 'gcat', 'mimeopen', 'metacity-message', 'dh_installmime', 'ppmtopgm', 'c89-gcc', 'gvfs-mkdir', 'isovfy', 'xauth', 'lsinitramfs', 'preunzip', 'pamdice', 'webapp-container', 'yaml2obj', 'zeisstopnm', 'invgeod', 'mate-invest-chart', 'msgcomm', 'asciitopgm', 'xfce4-about', 'ipod-read-sysinfo-extended', 'pygettext', 'dgtst-int64', 'pico', 'systemd-cgtop', 'avahi-browse-domains', 'mcat', 'graphchk', 'zenity', 'hd', 'eps2eps', 'pvserver', 'pgmoil', 'pcimodules', 'xlet-settings', 'nmtui-edit', 'sensible-pager', 'pnmtofits', 'pdftotext', 'marco', 'parkill', 'pphs', 'nmtui-hostname', 'less', 'animate', 'tkconch', 'ptargrep', 'dgord-int64', 'faked-tcp', 'intel_aubdump', 'lli-child-target-3.9', 'zipnote', 'createfontdatachunk', 'run-mailcap', 'enchant', 'xterm', 'nm-online', 'partx', 'nmcli', 'setmetamode', 'systemd-run', 'pod2usage', 'rgrep', 'tabs', 'xkbwatch', 'gvfs-open', 'stdbuf', 'paraview', 'dpkg-name', 'caja', 'x86_64-linux-gnu-gcc-nm', 'session-installer', 'foo2slx-wrapper', 'alsaloop', 'nvidia-persistenced', 'ischroot', 'xprop', 'sessreg', 'realpath', 'xfdesktop-settings', 'f2py', 'symcryptrun', 'pdfinfo', 'setlogcons', 'transmission-gtk', 'bmptopnm', 'sudoedit', 'torify', 'pbmtoxbm', 'mpiexec.hydra', 'fail2ban-client', 'reset', 'mate-control-center', 'sudoreplay', 'desktop-file-validate', 'xpci', 'file-rename', 'hp-config_usb_printer', 'nsupdate', 'pbmtoplot', 'x11perfcomp', 'fc-cat', 'rendercheck', 'xkbbell', 'gnome-file-share-properties', 'dh_installinfo', 'xfce4-popup-windowmenu', 'gnome-system-monitor', 'mtools', 'cmp', 'qlalr', 'ntfsdecrypt', 'foo2oak', 'ppmtv', 'ppmcie', 'dh_installmenu', 'lofromtemplate', 'codepage', 'tifftopnm', 'lconvert', 'lspgpot', 'hsdb', 'intel_opregion_decode', 'llvm-rtdyld', 'ssh-add', 'x86_64-linux-gnu-gcc-5', 'mate-keybinding-properties', 'rediff', 'hydra_persist', 'ibus', 't1asm', 'hwloc-annotate', 'ppmtolj', 'pamdeinterlace', 'intel_gpu_time', 'xfhelp4', 'etags.emacs24', 'ps2ascii', 'ncal', 'mate-default-applications-properties', 'deallocvt', 'twistd', 'rmiregistry', 'igawk', 'dh_gconf', 'tee', 'intel_forcewaked', 'hwloc-distrib', 'gsettings-schema-convert', 'bashbug', 'mcomp', 'linguist', 'tracepath', 'oclock', 'dh_installman', 'glib-compile-resources', 'padsp', 'deb-systemd-invoke', 'pi3topbm', 'gdbserver', 'dh_python3', 'sancov-3.9', 'pnmpaste', 'taskset', 'imgtoppm', 'igt_stats', '411toppm', 'bsd-write', 'scp-dbus-service', 'mpaste', 'x-terminal-emulator', 'gpgconf', 'intel-virtual-output', 'rmid', 'evince-thumbnailer', 'llvm-as', 'lz', 'wc', 'ppmcolormask', 'ssh-argv0', 'split', 'dotlockfile', 'install-printerdriver', 'mate-network-properties', 'fixcvsdiff', 'xscreensaver-command', 'globaltime', 'watchgnupg', 'col', 'i386', 'catman', 'shasum', 'dh_installexamples', 'eog', 'sha512sum', 'pnmnoraw', 'dh_perl', 'dh_installxfonts', 'dh_installmanpages', 'xrefresh', 'pyclean', 'debconf-copydb', 'fc-list', 'loffice', 'dh_installifupdown', 'atktopbm', 'cinnamon-desktop-editor', 'chardetect3', 'gnome-language-selector', 'dpkg-gensymbols', 'sgitopnm', 'gcc-ar', 'script', 'xmlpatternsvalidator', 'verify-uselistorder-3.9', 'bluemoon', 'btmgmt', 'lli', 'hwloc-distances', 'update-mime-database.real', 'llvm-dis-3.8', 'free', '2to3', 'wish8.6', 'dconf', 'xzfgrep', 'qdoc3', 'POST', 'pathchk', 'vim.tiny', 'x2gostartagent', 'proj', 'x86_64-linux-gnu-g++-5', 'x86_64-linux-gnu-nm', 'netkit-ftp', 'qmake', 'gnome-open', 'dh_strip', 'c89', 'pinky', 'dbiproxy', 'xrandr-tool', 'pf2afm', 'x2goresume-session', 'pgmslice', 'sputoppm', 'sbverify', 'mate-power-manager', 'pdftohtml', 'rpmquery', 'deb-systemd-helper', 'rhythmbox-client', 'apt-add-repository', 'pamstack', 'nvidia-cuda-mps-control', 'intel_dump_decode', 'python2', 'lli-3.8', 'pnmtorast', 'gdbus', 'ps2txt', 'enhancer', 'ppmshadow', 'qcollectiongenerator', 'strings', 'neqn', 'pkexec', 'cut', 'pnmgamma', 'dh_dkms', 'gtf', 'bitmap', 'hydra_pmi_proxy', 'chage', 'viewer.py', 'ppdpo', 'pydoc3.5', 'locate', 'chrt', 'gcov-tool', 'x2goumount_session', 'spellintian', 'newgrp', 'gnome-power-statistics', 'pstree.x11', 'invproj', 'foo2lava-wrapper', 'sdptool', 'getkeycodes', 'HEAD', 'bugpoint', 'grub-syslinux2cfg', 'atril', 'python3.5m', 'pamstretch', 'gconftool-2', 'ttfread', 'py3compile', 'pastebin', 'xgc', 'zipgrep', 'lispmtopgm', 'rgb3toppm', 'intel_reg_checker', 'ppmtopict', 'gpu-manager', 'lrelease', 'pgmcrater', 'dh_install', 'infocmp', 'scan-view-3.9', 'hbpldecode', 'fail2ban-regex', 'usb_printerid', 'gcc-nm', 'nad2bin', 'ppmtopj', 'qtdiag', 'gcr-viewer', 'x2goumount-session-mate', 'x86_64-linux-gnu-pkg-config', 'unity-control-center', 'mogrify-im6', 'pbmpage', 'ebrowse', 'dh_update_autotools_config', 'dh_auto_install', 'pdfdetach', 'xfce4-keyboard-settings', 'dbus-uuidgen', 'compose', 'ppmtoicr', 'hwloc-calc', 'ex'] ['dosfslabel', 'dumpe2fs', 'ntfsundelete', 'upstart-event-bridge', 'mkfs.bfs', 'iwspy', 'fsfreeze', 'apparmor_parser', 'ip6tables-save', 'findfs', 'mount.ntfs', 'telinit', 'restore', 'apm_available', 'reload', 'start', 'pccardctl', 'getpcaps', 'chcpu', 'stop', 'ntfslabel', 'killall5', 'upstart', 'get-quirk-options', 'udevadm', 'start-stop-daemon', 'key.dns_resolver', 'tune2fs', 'regdbdump', 'rtacct', 'halt', 'fsck.msdos', 'ifup', 'zramctl', 'rdump', 'swapoff', 'mkntfs', 'rtmon', 'installkernel', 'upstart-local-bridge', 'swapon', 'getcap', 'mntctl', 'mii-tool', 'getty', 'setvtrgb', 'fsck.nfs', 'runlevel', 'sfdisk', 'ntfscp', 'iptables-save', 'umount.udisks2', 'lsmod', 'e2fsck', 'mkfs.ntfs', 'on_ac_power', 'mkfs', 'fatlabel', 'e2undo', 'iwconfig', 'pivot_root', 'iptables-restore', 'hwclock', 'unix_chkpwd', 'mount.nfs4', 'sgdisk', 'poweroff', 'fixparts', 'mount.nfs', 'umount.nfs', 'logsave', 'tipc', 'rpc.statd', 'e2label', 'ifdown', 'isosize', 'wpa_action', 'swaplabel', 'reboot', 'partprobe', 'hdparm', 'fstrim', 'wpa_cli', 'pam_tally', 'ntfsresize', 'bridge', 'fsck.vfat', 'brltty-setup', 'mkfs.vfat', 'rmmod', 'pam_extrausers_update', 'insmod', 'ip6tables-restore', 'dump', 'mkswap', 'mount.fuse', 'mkfs.fat', 'lspcmcia', 'ifquery', 'ipmaddr', 'prime-switch', 'mke2fs', 'resolvconf', 'rarp', 'cgdisk', 'tc', 'capsh', 'rrestore', 'iwlist', 'iwevent', 'ntfsclone', 'dhclient-script', 'fsck.ext4', 'mkhomedir_helper', 'alsa', 'modprobe', 'mountall', 'xtables-multi', 'upstart-udev-bridge', 'iptunnel', 'crda', 'brltty', 'fsck.ext3', 'pam_extrausers_chkpwd', 'request-key', 'acpi_available', 'init', 'ldconfig.real', 'blkid', 'sm-notify', 'mkfs.cramfs', 'depmod', 'debugfs', 'restart', 'sulogin', 'upstart-file-bridge', 'gdisk', 'plymouthd', 'cfdisk', 'resize2fs', 'fsck.fat', 'ethtool', 'ip6tables', 'fdisk', 'showmount', 'sysctl', 'iptables', 'shutdown', 'modinfo', 'iw', 'switch_root', 'iwpriv', 'ldconfig', 'route', 'ctrlaltdel', 'upstart-dbus-bridge', 'losetup', 'fsck.ext2', 'fsck', 'mkdosfs', 'blkdiscard', 'fsck.cramfs', 'ureadahead', 'dhclient', 'badblocks', 'kbdrate', 'mkfs.ext3', 'initctl', 'mkfs.minix', 'prime-offload', 'rpcbind', 'osd_login', 'MAKEDEV', 'mkfs.ext4dev', 'create-uvm-dev-node', 'mount.ntfs-3g', 'fsck.ext4dev', 'fstab-decode', 'parted', 'mount.lowntfs-3g', 'iwgetid', 'mkfs.ext4', 'nameif', 'ip', 'wpa_supplicant', 'raw', 'setcap', 'shadowconfig', 'agetty', 'blockdev', 'upstart-socket-bridge', 'plipconfig', 'status', 'unix_update', 'u-d-c-print-pci-ids', 'pam_tally2', 'wipefs', 'fsck.minix', 'mkfs.msdos', 'ifconfig', 'slattach', 'umount.nfs4', 'runuser', 'dosfsck', 'e2image', 'mkfs.ext2'] ['ntfscmp', 'echo', 'tempfile', 'kmod', 'sync', 'sh', 'login', 'fgconsole', 'gunzip', 'mount', 'udevadm', 'sleep', 'gzip', 'lessfile', 'bzmore', 'ping6', 'open', 'bzcmp', 'ntfscluster', 'kbd_mode', 'df', 'fusermount', 'tailf', 'chown', 'mt', 'busybox', 'setfacl', 'ypdomainname', 'openvt', 'whiptail', 'which', 'zmore', 'bzip2recover', 'lsmod', 'setupcon', 'pwd', 'systemd-machine-id-setup', 'gzexe', 'findmnt', 'systemd-notify', 'fgrep', 'ntfsinfo', 'fuser', 'lowntfs-3g', 'loadkeys', 'setfont', 'netcat', 'run-parts', 'sh.distrib', 'efibootmgr', 'ntfsfallocate', 'date', 'zgrep', 'bzgrep', 'ed', 'bzcat', 'chacl', 'nc', 'netstat', 'ntfswipe', 'pidof', 'false', 'dnsdomainname', 'ntfs-3g.probe', 'cp', 'ntfs-3g', 'dash', 'bash', 'ntfs-3g.secaudit', 'keyctl', 'egrep', 'chmod', 'loginctl', 'ntfsmove', 'nano', 'lessecho', 'mountpoint', 'rnano', 'cat', 'systemd', 'hciconfig', 'mt-gnu', 'uname', 'ps', 'stty', 'zegrep', 'bzfgrep', 'ntfs-3g.usermap', 'systemctl', 'rbash', 'plymouth', 'bzegrep', 'more', 'su', 'lesspipe', 'ntfsls', 'rm', 'systemd-escape', 'static-sh', 'mv', 'kill', 'dumpkeys', 'bzless', 'vdir', 'systemd-tty-ask-password-agent', 'zfgrep', 'rmdir', 'tar', 'sed', 'zdiff', 'readlink', 'chgrp', 'touch', 'mkdir', 'ulockmgr_server', 'red', 'ln', 'journalctl', 'lesskey', 'systemd-tmpfiles', 'zcat', 'bunzip2', 'cpio', 'dir', 'networkctl', 'systemd-hwdb', 'nisdomainname', 'bzip2', 'zless', 'mktemp', 'systemd-inhibit', 'zcmp', 'unicode_start', 'systemd-ask-password', 'bzexe', 'hostname', 'grep', 'getfacl', 'ntfscat', 'znew', 'ip', 'less', 'ls', 'dd', 'zforce', 'ping', 'true', 'lsblk', 'ss', 'ntfstruncate', 'umount', 'bzdiff', 'domainname', 'wdctl', 'ntfsfix', 'uncompress', 'mknod', 'nc.openbsd', 'chvt', 'dmesg'] ['espdiff', 'gnome-mines', 'gnome-mahjongg', 'sol', 'gnome-sudoku'] [] Warning accessing /snap/bin gives errors: [Errno 2] No such file or directory: '/snap/bin' Warning accessing /home/dsu/Soft/Paraview/ParaView-5.5.0/bin gives errors: [Errno 2] No such file or directory: '/home/dsu/Soft/Paraview/ParaView-5.5.0/bin' ['mpeg2encode', 'visitprotocol', 'xml2cmake', 'makemili', 'text2polys', 'run_doxygen', 'frontendlauncher', 'xml2window', 'surfcomp', 'Doxyfile', 'xmltest', 'visit0000.session', 'time_annotation', 'visit_plugin', 'xmledit', 'xml2atts', 'curv3dprep', 'visit_transition', 'regen-ajp', 'visit_composite', 'visit', 'xml2plugin', 'xml2python', 'frontendlauncher.py', 'visitconvert', 'xml2avt', 'mkgrdbl', 'xml2info', 'xml2java', 'visit0000.session.gui'] ['codecov', 'tselect', 'icpc', 'compilervars.csh', 'xild', 'map_opts', 'gdb-ia', 'ifortvars.sh', 'ifortvars.csh', 'profdcg', 'ifort', 'proforder', 'compilervars.sh', 'gcore-ia', 'iccvars.sh', 'xiar', 'icc', 'iccvars.csh', 'profmerge', 'fpp'] Warning accessing /home/dsu/Soft/Paraview/ParaView-5.5.0/bin gives errors: [Errno 2] No such file or directory: '/home/dsu/Soft/Paraview/ParaView-5.5.0/bin' ['mpeg2encode', 'visitprotocol', 'xml2cmake', 'makemili', 'text2polys', 'run_doxygen', 'frontendlauncher', 'xml2window', 'surfcomp', 'Doxyfile', 'xmltest', 'visit0000.session', 'time_annotation', 'visit_plugin', 'xmledit', 'xml2atts', 'curv3dprep', 'visit_transition', 'regen-ajp', 'visit_composite', 'visit', 'xml2plugin', 'xml2python', 'frontendlauncher.py', 'visitconvert', 'xml2avt', 'mkgrdbl', 'xml2info', 'xml2java', 'visit0000.session.gui'] ['codecov', 'tselect', 'icpc', 'compilervars.csh', 'xild', 'map_opts', 'gdb-ia', 'ifortvars.sh', 'ifortvars.csh', 'profdcg', 'ifort', 'proforder', 'compilervars.sh', 'gcore-ia', 'iccvars.sh', 'xiar', 'icc', 'iccvars.csh', 'profmerge', 'fpp'] Path provided by --with-executables-search-path ['win32feutils.dll', 'win32fe.exe'] ================================================================================ TEST configurePrograms from config.programs(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/programs.py:71) TESTING: configurePrograms from config.programs(config/BuildSystem/config/programs.py:71) Check for the programs needed to build and run PETSc Checking for program /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/sh...not found Checking for program /home/dsu/Soft/PETSc/petsc-3.10.5/linux-gnu-opt/bin/sh...not found Checking for program /usr/local/sbin/sh...not found Checking for program /usr/local/bin/sh...not found Checking for program /usr/sbin/sh...not found Checking for program /usr/bin/sh...not found Checking for program /sbin/sh...not found Checking for program /bin/sh...found Defined make macro "SHELL" to "/bin/sh" Checking for program /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/sed...not found Checking for program /home/dsu/Soft/PETSc/petsc-3.10.5/linux-gnu-opt/bin/sed...not found Checking for program /usr/local/sbin/sed...not found Checking for program /usr/local/bin/sed...not found Checking for program /usr/sbin/sed...not found Checking for program /usr/bin/sed...not found Checking for program /sbin/sed...not found Checking for program /bin/sed...found Defined make macro "SED" to "/bin/sed" All intermediate test results are stored in /tmp/petsc-oluu3nld/config.programs Running Executable WITHOUT threads to time it out Executing: /bin/sed -i s/sed/sd/g "/tmp/petsc-oluu3nld/config.programs/sed1" Adding SEDINPLACE cmd: /bin/sed -i Defined make macro "SEDINPLACE" to "/bin/sed -i" Checking for program /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mv...not found Checking for program /home/dsu/Soft/PETSc/petsc-3.10.5/linux-gnu-opt/bin/mv...not found Checking for program /usr/local/sbin/mv...not found Checking for program /usr/local/bin/mv...not found Checking for program /usr/sbin/mv...not found Checking for program /usr/bin/mv...not found Checking for program /sbin/mv...not found Checking for program /bin/mv...found Defined make macro "MV" to "/bin/mv" Checking for program /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/cp...not found Checking for program /home/dsu/Soft/PETSc/petsc-3.10.5/linux-gnu-opt/bin/cp...not found Checking for program /usr/local/sbin/cp...not found Checking for program /usr/local/bin/cp...not found Checking for program /usr/sbin/cp...not found Checking for program /usr/bin/cp...not found Checking for program /sbin/cp...not found Checking for program /bin/cp...found Defined make macro "CP" to "/bin/cp" Checking for program /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/grep...not found Checking for program /home/dsu/Soft/PETSc/petsc-3.10.5/linux-gnu-opt/bin/grep...not found Checking for program /usr/local/sbin/grep...not found Checking for program /usr/local/bin/grep...not found Checking for program /usr/sbin/grep...not found Checking for program /usr/bin/grep...not found Checking for program /sbin/grep...not found Checking for program /bin/grep...found Defined make macro "GREP" to "/bin/grep" Checking for program /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/rm...not found Checking for program /home/dsu/Soft/PETSc/petsc-3.10.5/linux-gnu-opt/bin/rm...not found Checking for program /usr/local/sbin/rm...not found Checking for program /usr/local/bin/rm...not found Checking for program /usr/sbin/rm...not found Checking for program /usr/bin/rm...not found Checking for program /sbin/rm...not found Checking for program /bin/rm...found Defined make macro "RM" to "/bin/rm -f" Checking for program /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/diff...not found Checking for program /home/dsu/Soft/PETSc/petsc-3.10.5/linux-gnu-opt/bin/diff...not found Checking for program /usr/local/sbin/diff...not found Checking for program /usr/local/bin/diff...not found Checking for program /usr/sbin/diff...not found Checking for program /usr/bin/diff...found Running Executable WITHOUT threads to time it out Executing: "/usr/bin/diff" -w "/tmp/petsc-oluu3nld/config.programs/diff1" "/tmp/petsc-oluu3nld/config.programs/diff2" Defined make macro "DIFF" to "/usr/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /home/dsu/Soft/PETSc/petsc-3.13.2/lib/petsc/bin/win32fe/ps...not found Unable to find programs ['ps'] providing listing of each search directory to help debug Path provided in Python program Warning accessing /usr/ucb gives errors: [Errno 2] No such file or directory: '/usr/ucb' Warning accessing /usr/usb gives errors: [Errno 2] No such file or directory: '/usr/usb' Path provided by --with-executables-search-path ['win32feutils.dll', 'win32fe.exe'] Defined make macro "PYTHON" to "/usr/bin/python3" Checking for program /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/m4...not found Checking for program /home/dsu/Soft/PETSc/petsc-3.10.5/linux-gnu-opt/bin/m4...not found Checking for program /usr/local/sbin/m4...not found Checking for program /usr/local/bin/m4...not found Checking for program /usr/sbin/m4...not found Checking for program /usr/bin/m4...found Defined make macro "M4" to "/usr/bin/m4" child config.programs 0.047799 ================================================================================ TEST configureMake from config.packages.make(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/packages/make.py:87) TESTING: configureMake from config.packages.make(config/BuildSystem/config/packages/make.py:87) Check Guesses for GNU make Running Executable WITHOUT threads to time it out Executing: gmake --version GNUMake check failed: Could not execute "['gmake --version']": /bin/sh: 1: gmake: not found Running Executable WITHOUT threads to time it out Executing: make --version stdout: GNU Make 4.1 Built for x86_64-pc-linux-gnu Copyright (C) 1988-2014 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. Checking for program /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/make...not found Checking for program /home/dsu/Soft/PETSc/petsc-3.10.5/linux-gnu-opt/bin/make...not found Checking for program /usr/local/sbin/make...not found Checking for program /usr/local/bin/make...not found Checking for program /usr/sbin/make...not found Checking for program /usr/bin/make...found Defined make macro "MAKE" to "/usr/bin/make" ================================================================================ TEST setupGNUMake from config.packages.make(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/packages/make.py:121) TESTING: setupGNUMake from config.packages.make(config/BuildSystem/config/packages/make.py:121) Setup other GNU make stuff Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC})" and code [] Defined make rule "libcxx" with dependencies "${LIBNAME}(${OBJSCXX})" and code [] Defined make rule "libcu" with dependencies "${LIBNAME}(${OBJSCU})" and code [] Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} Defined make macro "OMAKE_PRINTDIR " to "/usr/bin/make --print-directory" Defined make macro "OMAKE" to "/usr/bin/make --no-print-directory" Defined make macro "MAKE_PAR_OUT_FLG" to "--output-sync=recurse" ================================================================================ TEST configureMakeNP from config.packages.make(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/packages/make.py:168) TESTING: configureMakeNP from config.packages.make(config/BuildSystem/config/packages/make.py:168) check no of cores on the build machine [perhaps to do make '-j ncores'] module multiprocessing found 64 cores: using make_np = 40 Defined make macro "MAKE_NP" to "40" Defined make macro "MAKE_TEST_NP" to "27" Defined make macro "MAKE_LOAD" to "96.0" Defined make macro "NPMAX" to "64" child config.packages.make 0.030551 ================================================================================ TEST alternateConfigureLibrary from config.packages.OpenMPI(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.OpenMPI(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.OpenMPI 0.001481 Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux ================================================================================ TEST checkDependencies from config.packages.MPICH(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:843) TESTING: checkDependencies from config.packages.MPICH(config/BuildSystem/config/package.py:843) ================================================================================ TEST configureLibrary from config.packages.MPICH(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:868) TESTING: configureLibrary from config.packages.MPICH(config/BuildSystem/config/package.py:868) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional MPICH Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Looking for MPICH at git.mpich, hg.mpich or a directory starting with ['mpich'] Could not locate an existing copy of MPICH: [] Downloading MPICH =============================================================================== Trying to download https://www.mpich.org/static/downloads/3.3.2/mpich-3.3.2.tar.gz for MPICH =============================================================================== Downloading https://www.mpich.org/static/downloads/3.3.2/mpich-3.3.2.tar.gz to /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/_d_mpich-3.3.2.tar.gz Extracting /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/_d_mpich-3.3.2.tar.gz Running Executable WITHOUT threads to time it out Executing: cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages; chmod -R a+r mpich-3.3.2;find mpich-3.3.2 -type d -name "*" -exec chmod a+rx {} \; Looking for MPICH at git.mpich, hg.mpich or a directory starting with ['mpich'] Found a copy of MPICH in mpich-3.3.2 All intermediate test results are stored in /tmp/petsc-oluu3nld/config.packages.MPICH Running Executable WITHOUT threads to time it out Executing: gfortran -v Running Executable WITHOUT threads to time it out Executing: gfortran -V Running Executable WITHOUT threads to time it out Executing: gfortran --version stdout: GNU Fortran (Ubuntu 5.4.0-6ubuntu1~16.04.12) 5.4.0 20160609 Copyright (C) 2015 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING Removing configure arguments ['--disable-f90', '--enable-f90'] Removing configure arguments ['F90="gfortran"', 'F90FLAGS="-fPIC -ffree-line-length-0 -O3"'] MPICH was just downloaded, forcing a rebuild because cannot determine if package has changed =============================================================================== Running configure on MPICH; this may take several minutes =============================================================================== Running Executable WITHOUT threads to time it out Executing: ./configure --prefix=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt MAKE=/usr/bin/make --libdir=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib CC="gcc" CFLAGS="-fPIC -fstack-protector -O3" AR="/usr/bin/ar" ARFLAGS="cr" CXX="g++" CXXFLAGS="-fstack-protector -O3 -fPIC -std=gnu++11" FFLAGS="-fPIC -ffree-line-length-0 -O3" FC="gfortran" F77="gfortran" FCFLAGS="-fPIC -ffree-line-length-0 -O3" --enable-shared --with-device=ch3:sock --with-pm=hydra --enable-g=meminit stdout: Configuring MPICH version 3.3.2 with '--prefix=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt' 'MAKE=/usr/bin/make' '--libdir=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib' 'CC=gcc' 'CFLAGS=-fPIC -fstack-protector -O3' 'AR=/usr/bin/ar' 'ARFLAGS=cr' 'CXX=g++' 'CXXFLAGS=-fstack-protector -O3 -fPIC -std=gnu++11' 'FFLAGS=-fPIC -ffree-line-length-0 -O3' 'FC=gfortran' 'F77=gfortran' 'FCFLAGS=-fPIC -ffree-line-length-0 -O3' '--enable-shared' '--with-device=ch3:sock' '--with-pm=hydra' '--enable-g=meminit' Running on system: Linux andromeda 4.15.0-46-generic #49~16.04.1-Ubuntu SMP Tue Feb 12 17:45:24 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking target system type... x86_64-unknown-linux-gnu checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether /usr/bin/make sets $(MAKE)... yes checking for style of include used by /usr/bin/make... GNU checking whether /usr/bin/make supports nested variables... yes checking dependency style of gcc... gcc3 checking whether to enable maintainer-specific portions of Makefiles... yes checking the archiver (/usr/bin/ar) interface... ar checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether /usr/bin/make supports nested variables... (cached) yes checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate Parsing Arguments for OFI Netmod checking hcoll/api/hcoll_api.h usability... no checking hcoll/api/hcoll_api.h presence... no checking for hcoll/api/hcoll_api.h... no checking for hcoll_init in -lhcoll... no configure: RUNNING PREREQ FOR ch3:sock checking for strerror... yes checking for poll... yes checking assert.h usability... yes checking assert.h presence... yes checking for assert.h... yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking netinet/tcp.h usability... yes checking netinet/tcp.h presence... yes checking for netinet/tcp.h... yes checking poll.h usability... yes checking poll.h presence... yes checking for poll.h... yes checking for stdlib.h... (cached) yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking sys/poll.h usability... yes checking sys/poll.h presence... yes checking for sys/poll.h... yes checking for sys/types.h... (cached) yes checking sys/uio.h usability... yes checking sys/uio.h presence... yes checking for sys/uio.h... yes checking for unistd.h... (cached) yes checking if struct poll is defined... yes checking if a simple program using poll() can be compiled... yes checking whether bit fields work in ip.h... yes checking for gethostname... yes checking whether gethostname needs a declaration... no checking for library containing socket... none required checking for library containing gethostbyname... none required checking whether socklen_t is defined (in sys/socket.h if present)... yes configure: ===== configuring src/mpl ===== configure: running /bin/bash ./configure --disable-option-checking '--prefix=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt' --disable-versioning --enable-embedded 'MAKE=/usr/bin/make' '--libdir=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib' 'CC=gcc' 'CFLAGS=-fPIC -fstack-protector -O3 ' 'AR=/usr/bin/ar' 'ARFLAGS=cr' 'CXX=g++' 'CXXFLAGS=-fstack-protector -O3 -fPIC -std=gnu++11 ' 'FFLAGS=-fPIC -ffree-line-length-0 -O3 ' 'FC=gfortran' 'F77=gfortran' 'FCFLAGS=-fPIC -ffree-line-length-0 -O3 ' '--enable-shared' '--with-device=ch3:sock' '--with-pm=hydra' '--enable-g=meminit' --cache-file=/dev/null --srcdir=. checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether /usr/bin/make sets $(MAKE)... yes checking whether /usr/bin/make supports nested variables... yes checking for style of include used by /usr/bin/make... GNU checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... gcc3 checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking the archiver (/usr/bin/ar) interface... ar checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether /usr/bin/make supports nested variables... (cached) yes checking for an ANSI C-conforming const... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking for variable argument list macro functionality... yes checking if C compiler supports __builtin_expect... yes checking for gcov... gcov checking whether the compiler supports __typeof(variable)... yes checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking for sys/types.h... (cached) yes checking sys/uio.h usability... yes checking sys/uio.h presence... yes checking for sys/uio.h... yes checking execinfo.h usability... yes checking execinfo.h presence... yes checking for execinfo.h... yes checking for unistd.h... (cached) yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking windows.h usability... no checking windows.h presence... no checking for windows.h... no checking sys/mman.h usability... yes checking sys/mman.h presence... yes checking for sys/mman.h... yes checking for inttypes.h... (cached) yes checking for stdint.h... 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(cached) no checking for posix_memalign... yes checking for aligned_alloc... yes checking whether aligned_alloc needs a declaration... no checking for backtrace_symbols... yes checking whether backtrace_create_state is declared... no checking whether backtrace_print is declared... no checking for library containing gethostbyname... none required checking for library containing socket... none required checking ifaddrs.h usability... yes checking ifaddrs.h presence... yes checking for ifaddrs.h... yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking for inet_ntop... yes checking for getifaddrs... yes checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking for __attribute__((aligned))... yes checking for __attribute__((used))... yes checking for __attribute__((fallthrough))... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating localdefs config.status: creating include/mpl_timer.h config.status: creating include/config.h config.status: executing depfiles commands config.status: executing libtool commands config.status: executing prefix-config commands configure: ===== done with src/mpl configure ===== configure: sourcing src/mpl/localdefs configure: ===== configuring src/openpa ===== configure: running /bin/bash ./configure --disable-option-checking '--prefix=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt' --disable-versioning --enable-embedded --with-atomic-primitives=auto_allow_emulation 'MAKE=/usr/bin/make' '--libdir=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib' 'CC=gcc' 'CFLAGS=-fPIC -fstack-protector -O3 ' 'AR=/usr/bin/ar' 'ARFLAGS=cr' 'CXX=g++' 'CXXFLAGS=-fstack-protector -O3 -fPIC -std=gnu++11 ' 'FFLAGS=-fPIC -ffree-line-length-0 -O3 ' 'FC=gfortran' 'F77=gfortran' 'FCFLAGS=-fPIC -ffree-line-length-0 -O3 ' '--enable-shared' '--with-device=ch3:sock' '--with-pm=hydra' '--enable-g=meminit' --cache-file=/dev/null --srcdir=. checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether /usr/bin/make sets $(MAKE)... yes checking whether /usr/bin/make supports nested variables... yes checking for style of include used by /usr/bin/make... GNU checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... gcc3 checking the archiver (/usr/bin/ar) interface... ar checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether /usr/bin/make supports nested variables... (cached) yes checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking whether gcc understands -c and -o together... (cached) yes checking dependency style of gcc... (cached) gcc3 checking whether to enable assertions... yes checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking atomic.h usability... no checking atomic.h presence... no checking for atomic.h... no checking intrin.h usability... no checking intrin.h presence... no checking for intrin.h... no checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking for an ANSI C-conforming const... yes checking for pthread_create in -lpthread... yes checking for pthread_yield... yes checking if 100 threads can be run at once... yes checking size of void *... 8 checking size of int... 4 checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking if compiler rejects bogus asm statements... yes checking for support for gcc x86/x86_64 primitives... yes checking for support for gcc x86 primitives for pre-Pentium 4... yes checking for support for gcc ia64 primitives... no checking for support for gcc PowerPC atomics... no checking for support for gcc ARM atomics... no checking for support for gcc SiCortex atomics... no checking for support for gcc atomic intrinsics... yes checking for support for Windows NT atomic intrinsics... no checking for support for Sun atomic operations library... no checking whether to enable strict fairness checks... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating test/Makefile config.status: creating openpa.pc config.status: creating src/config.h config.status: executing depfiles commands config.status: executing libtool commands config.status: executing prefix-config commands configure: ===== done with src/openpa configure ===== checking for type of weak symbol alias support... pragma weak checking whether __attribute__ ((weak)) allowed... yes checking whether __attribute__ ((weak_import)) allowed... yes checking whether __attribute__((weak,alias(...))) allowed... yes checking for multiple weak symbol support... yes checking if gcc supports -fvisibility=hidden... yes checking whether to enable symbol visibility... yes (via -fvisibility=hidden) checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for X... libraries , headers ### ### Configuring hwloc core ### checking hwloc building mode... embedded configure: hwloc builddir: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc configure: hwloc srcdir: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc checking for hwloc version... 2.0.3rc2-git checking if want hwloc maintainer support... disabled (embedded mode) checking for hwloc directory prefix... src/hwloc/ checking for hwloc symbol prefix... hwloc_ checking for gcc option to accept ISO C99... none needed checking size of void *... 8 checking which OS support to include... Linux checking which CPU support to include... x86_64 checking size of unsigned long... 8 checking size of unsigned int... 4 checking for the C compiler vendor... gnu checking for __attribute__... yes checking for __attribute__(aligned)... yes checking for __attribute__(always_inline)... yes checking for __attribute__(cold)... yes checking for __attribute__(const)... yes checking for __attribute__(deprecated)... yes checking for __attribute__(format)... yes checking for __attribute__(hot)... yes checking for __attribute__(malloc)... yes checking for __attribute__(may_alias)... yes checking for __attribute__(no_instrument_function)... yes checking for __attribute__(nonnull)... yes checking for __attribute__(noreturn)... yes checking for __attribute__(packed)... yes checking for __attribute__(pure)... yes checking for __attribute__(sentinel)... yes checking for __attribute__(unused)... yes checking for __attribute__(warn_unused_result)... yes checking for __attribute__(weak_alias)... yes checking whether to enable symbol visibility... no (disabled) checking whether the C compiler rejects function calls with too many arguments... yes checking whether the C compiler rejects function calls with too few arguments... yes checking for unistd.h... (cached) yes checking dirent.h usability... yes checking dirent.h presence... yes checking for dirent.h... yes checking for strings.h... (cached) yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking for strcasecmp... yes checking whether strcasecmp is declared... yes checking whether function strcasecmp has a complete prototype... yes checking for strncasecmp... yes checking whether strncasecmp is declared... yes checking whether function strncasecmp has a complete prototype... yes checking for strftime... yes checking for setlocale... yes checking for stdint.h... 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works with an invalid prototype program... yes checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes checking for shared library (esp. rpath) characteristics of CC... done (results in src/env/cc_shlib.conf) checking whether Fortran 77 compiler accepts option -O2... yes checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes checking how to get verbose linking output from gfortran... -v checking for Fortran 77 libraries of gfortran... -L/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/5/../../.. -lgfortran -lm -lquadmath checking whether gfortran accepts the FLIBS found by autoconf... yes checking whether gcc links with FLIBS found by autoconf... yes checking whether Fortran 77 and C objects are 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Use Fortran to link programs checking for Fortran 77 name mangling... lower uscore checking for libraries to link Fortran main with C stdio routines... none checking whether Fortran init will work with C... yes checking for extension for Fortran 90 programs... f90 checking whether the Fortran 90 compiler (gfortran -fPIC -ffree-line-length-0 -O3 ) works... yes checking whether the Fortran 90 compiler (gfortran -fPIC -ffree-line-length-0 -O3 ) is a cross-compiler... no checking whether Fortran 90 compiler works with Fortran 77 compiler... yes checking for shared library (esp. rpath) characteristics of F77... done (results in src/env/f77_shlib.conf) checking whether Fortran 77 accepts ! for comments... yes checking for include directory flag for Fortran... -I checking for Fortran 77 flag for library directories... -L checking whether Fortran 77 compiler processes .F files with C preprocessor... yes checking whether gfortran allows mismatched arguments... yes checking for Fortran 2008 support... no checking for shared library (esp. rpath) characteristics of FC... done (results in src/env/fc_shlib.conf) checking whether the Fortran 90 compiler (gfortran -fPIC -ffree-line-length-0 -O3 ) works... yes checking whether the Fortran 90 compiler (gfortran -fPIC -ffree-line-length-0 -O3 ) is a cross-compiler... no checking for Fortran 90 module extension... mod checking for Fortran 90 module include flag... -I checking for Fortran 90 module output directory flag... -J checking whether Fortran 90 compiler accepts option -O2... yes checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes checking whether Fortran 90 compiler processes .F90 files with C preprocessor... yes checking what libraries are needed to link Fortran90 programs with C routines that use stdio... none checking whether TRUE has been defined... no checking whether the C++ compiler g++ can build an executable... yes checking whether C++ compiler works with string... yes checking whether the compiler supports exceptions... yes checking whether the compiler recognizes bool as a built-in type... yes checking whether the compiler implements namespaces... yes checking whether available... yes checking whether the compiler implements the namespace std... yes checking whether available... no checking for GNU g++ version... 5 . 4 checking for shared library (esp. rpath) characteristics of CXX... done (results in src/env/cxx_shlib.conf) checking whether C++ compiler accepts option -O2... yes checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes checking for perl... /usr/bin/perl checking for ar... /usr/bin/ar checking for ranlib... ranlib checking for killall... killall checking whether install works... yes checking whether mkdir -p works... yes checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for bash... /bin/bash checking whether /bin/bash supports arrays... yes checking for doctext... false checking for an ANSI C-conforming const... yes checking for working volatile... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking if C compiler supports __builtin_expect... yes checking whether byte ordering is bigendian... no checking whether C compiler allows unaligned doubles... yes checking whether gcc supports __func__... yes checking whether long double is supported... yes checking whether long long is supported... yes checking for max C struct integer alignment... eight checking for max C struct floating point alignment... sixteen checking for max C struct alignment of structs with doubles... eight checking for max C struct floating point alignment with long doubles... sixteen checking if alignment of structs with doubles is based on position... no checking if alignment of structs with long long ints is based on position... no checking if double alignment breaks rules, find actual alignment... no checking for alignment restrictions on pointers... int or better checking size of char... 1 checking size of unsigned char... 1 checking size of short... 2 checking size of unsigned short... 2 checking size of int... 4 checking size of unsigned int... 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True is 1 and False is 0 checking for Fortran 90 integer kind for 8-byte integers... 8 checking for Fortran 90 integer kind for 4-byte integers... 4 checking if real*8 is supported in Fortran 90... yes checking size of bool... 1 checking complex usability... yes checking complex presence... yes checking for complex... yes checking size of Complex... 8 checking size of DoubleComplex... 16 checking size of LongDoubleComplex... 32 checking whether C compiler accepts option -Werror... yes checking whether C compiler option -Werror works with an invalid prototype program... yes checking whether routines compiled with -Werror can be linked with ones compiled without -Werror... yes checking for alignment restrictions on int64_t... no checking for alignment restrictions on int32_t... no checking for gcov... gcov checking for ANSI C header files... (cached) yes checking for stdlib.h... 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(cached) yes checking for sched_getaffinity... yes checking for bindprocessor... no checking for thread_policy_set... no checking whether cpu_set_t available... yes checking whether the CPU_SET and CPU_ZERO macros are defined... yes configure: RUNNING CONFIGURE FOR F90 CODE checking whether ln -s works... yes checking for extension for Fortran 90 programs... f90 checking for the precision and range of reals... 6 , 37 checking for the precision and range of double precision... 15 , 307 checking for the range of integer... 9 checking for available integer kinds... 2 , 1, 4 , 2, 9 , 4, 18 , 8, checking for available integer ranges... { 2 , 1 , 1 }, { 4 , 2 , 2 }, { 9 , 4 , 4 }, { 18 , 8 , 8 }, checking for unistd.h... (cached) yes checking for string.h... (cached) yes checking for stdlib.h... (cached) yes checking for sys/socket.h... (cached) yes checking for strings.h... (cached) yes checking for assert.h... 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(cached) yes checking whether __attribute__((format)) allowed... (cached) yes configure: RUNNING CONFIGURE FOR CH3 DEVICE checking for assert.h... (cached) yes checking for limits.h... (cached) yes checking for string.h... (cached) yes checking for sys/types.h... (cached) yes checking for sys/uio.h... (cached) yes checking uuid/uuid.h usability... no checking uuid/uuid.h presence... no checking for uuid/uuid.h... no checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking for ctype.h... (cached) yes checking for unistd.h... (cached) yes checking for arpa/inet.h... (cached) yes checking for sys/socket.h... (cached) yes checking for net/if.h... yes checking for pid_t... yes checking for inet_pton... yes checking for gethostname... (cached) yes checking whether gethostname needs a declaration... (cached) no checking for CFUUIDCreate... no checking for uuid_generate... no checking for time... yes checking for OpenPA atomic primitive availability... yes checking whether byte ordering is bigendian... (cached) no configure: RUNNING CONFIGURE FOR ch3:sock checking for net/if.h... yes checking for netdb.h... (cached) yes checking sys/ioctl.h usability... yes checking sys/ioctl.h presence... yes checking for sys/ioctl.h... yes checking for sys/socket.h... (cached) yes checking sys/sockio.h usability... no checking sys/sockio.h presence... no checking for sys/sockio.h... no checking for sys/types.h... (cached) yes checking for errno.h... (cached) yes checking for netinet/in.h... (cached) yes configure: RUNNING CONFIGURE FOR CH3U SOCK CODE checking for assert.h... (cached) yes checking for limits.h... (cached) yes checking for string.h... (cached) yes checking for sys/types.h... (cached) yes checking for sys/uio.h... (cached) yes checking for time.h... 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(cached) no checking whether we can use struct ifconf... yes configure: ===== configuring src/mpid/common/sock ===== configure: ===== configuring src/mpi/romio ===== configure: running /bin/bash ./configure --disable-option-checking '--prefix=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt' 'MAKE=/usr/bin/make' '--libdir=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib' 'CC=gcc' 'CFLAGS=-fPIC -fstack-protector -O3 -O2' 'AR=/usr/bin/ar' 'ARFLAGS=cr' 'CXX=g++' 'CXXFLAGS=-fstack-protector -O3 -fPIC -std=gnu++11 -O2' 'FFLAGS=-fPIC -ffree-line-length-0 -O3 -O2' 'FC=gfortran' 'F77=gfortran' 'FCFLAGS=-fPIC -ffree-line-length-0 -O3 -O2' '--enable-shared' '--with-device=ch3:sock' '--with-pm=hydra' '--enable-g=meminit' --cache-file=/dev/null --srcdir=. checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... mkdir -p checking for gawk... gawk checking whether /usr/bin/make sets $(MAKE)... yes checking whether /usr/bin/make supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... yes checking for style of include used by /usr/bin/make... GNU checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... gcc3 checking for grep that handles long lines and -e... /bin/grep checking if gcc supports -fvisibility=hidden... yes checking whether to enable symbol visibility... yes (via -fvisibility=hidden) checking how to run the C preprocessor... gcc -E checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking the archiver (/usr/bin/ar) interface... ar checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld -m elf_x86_64 option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64 -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether /usr/bin/make supports nested variables... (cached) yes Configuring with args dummy mt checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for architecture... LINUX ROMIO home directory is /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/mpi/romio checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64 -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64 -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for long long... yes checking size of long long... 8 checking for memalign... yes checking Fortran external names Fortran externals have a trailing underscore and are lowercase checking for inline... inline checking for size_t... yes checking for ssize_t... yes checking for off_t... yes checking how to run the C preprocessor... gcc -E checking for unistd.h... (cached) yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for sys/types.h... (cached) yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking dirent.h usability... yes checking dirent.h presence... yes checking for dirent.h... yes checking for mpix.h... no checking for u_char... yes checking for u_short... yes checking for u_int... yes checking for u_long... yes checking sys/attr.h usability... no checking sys/attr.h presence... no checking for sys/attr.h... no checking size of int... 4 checking size of void *... 8 checking for int large enough for pointers... no checking size of long long... (cached) 8 checking for extension for Fortran 90 programs... f90 checking for Fortran 90 KIND parameter for 8-byte integers... 8 checking that we can use integer*8 to declare MPI_DISPLACMENT_CURRENT... yes Overriding Array test for MPICH checking for type of weak symbol alias support... pragma weak checking whether __attribute__ ((weak)) allowed... yes checking whether __attribute__ ((weak_import)) allowed... yes checking whether __attribute__((weak,alias(...))) allowed... yes checking for multiple weak symbol support... yes checking whether struct flock compatible with MPI_Offset... yes checking for pvfs2-config... notfound checking configured file systems... testfs ufs nfs checking for library containing aio_write... -lrt checking signal.h usability... yes checking signal.h presence... yes checking for signal.h... yes checking aio.h usability... yes checking aio.h presence... yes checking for aio.h... yes checking sys/aio.h usability... no checking sys/aio.h presence... no checking for sys/aio.h... no checking whether aio routines can be used... yes checking for obsolete two-argument aio_write... no checking for obsolete two-argument aio_suspend... no checking for struct aiocb.aio_fildes... yes checking for struct aiocb.aio_whence... no checking for struct aiocb.aio_handle... no checking for struct aiocb.aio_reqprio... yes checking for struct aiocb.aio_sigevent... yes checking sys/vfs.h usability... yes checking sys/vfs.h presence... yes checking for sys/vfs.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking sys/mount.h usability... yes checking sys/mount.h presence... yes checking for sys/mount.h... yes checking sys/statvfs.h usability... yes checking sys/statvfs.h presence... yes checking for sys/statvfs.h... yes checking for statfs... yes checking whether struct statfs properly defined... yes checking for f_type member of statfs structure... yes checking for f_fstypename member of statfs structure... no checking for sys/stat.h... (cached) yes checking for sys/types.h... (cached) yes checking for unistd.h... (cached) yes checking for stat... yes checking for st_fstype member of stat structure... no checking for sys/types.h... (cached) yes checking for sys/statvfs.h... (cached) yes checking for sys/vfs.h... (cached) yes checking for statvfs... yes checking for f_basetype member of statvfs structure... no checking for blksize_t... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking whether pwrite is declared... yes checking for strerror... yes checking for doctext... false checking for strdup... yes checking whether strdup needs a declaration... no checking for lstat... yes checking whether lstat needs a declaration... no checking for readlink... yes checking whether readlink needs a declaration... no checking for fsync... yes checking whether fsync needs a declaration... no checking for ftruncate... yes checking whether ftruncate needs a declaration... no checking for lseek64... yes checking whether lseek64 needs a declaration... no checking for usleep... yes checking whether usleep needs a declaration... no setting SYSDEP_INC to checking for C/C++ restrict keyword... __restrict checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking for gcov... gcov setting CC to gcc setting F77 to gfortran setting TEST_CC to $(bindir)/mpicc setting TEST_F77 to $(bindir)/mpifort setting CFLAGS to -fPIC -fstack-protector -O3 -O2 -DFORTRANUNDERSCORE -DHAVE_ROMIOCONF_H setting USER_CFLAGS to setting USER_FFLAGS to checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating localdefs config.status: creating mpi2-other/info/Makefile config.status: creating mpi2-other/array/Makefile config.status: creating test/Makefile config.status: creating test/misc.c config.status: creating test/large_file.c config.status: creating test/runtests config.status: creating test-internal/Makefile config.status: creating util/romioinstall config.status: creating include/mpio.h config.status: creating include/mpiof.h config.status: creating mpi2-other/info/fortran/Makefile config.status: creating mpi2-other/array/fortran/Makefile config.status: creating test/fmisc.f config.status: creating test/fcoll_test.f config.status: creating test/pfcoll_test.f config.status: creating test/fperf.f config.status: creating adio/include/romioconf.h config.status: executing depfiles commands config.status: executing libtool commands config.status: executing default-1 commands configure: ===== done with src/mpi/romio configure ===== configure: sourcing src/mpi/romio/localdefs configure: ===== configuring src/pm/hydra ===== configure: running /bin/bash ./configure --disable-option-checking '--prefix=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt' 'MAKE=/usr/bin/make' '--libdir=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib' 'CC=gcc' 'CFLAGS=-fPIC -fstack-protector -O3 -O2' 'AR=/usr/bin/ar' 'ARFLAGS=cr' 'CXX=g++' 'CXXFLAGS=-fstack-protector -O3 -fPIC -std=gnu++11 -O2' 'FFLAGS=-fPIC -ffree-line-length-0 -O3 -O2' 'FC=gfortran' 'F77=gfortran' 'FCFLAGS=-fPIC -ffree-line-length-0 -O3 -O2' '--enable-shared' '--with-device=ch3:sock' '--with-pm=hydra' '--enable-g=meminit' --cache-file=/dev/null --srcdir=. checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking target system type... x86_64-unknown-linux-gnu checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking for fgrep... /bin/grep -F checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... mkdir -p checking for gawk... gawk checking whether /usr/bin/make sets $(MAKE)... yes checking for style of include used by /usr/bin/make... GNU checking whether /usr/bin/make supports nested variables... yes checking dependency style of gcc... gcc3 checking the archiver (/usr/bin/ar) interface... ar checking whether /usr/bin/make supports nested variables... (cached) yes checking for perl... /usr/bin/perl checking for doctext... false checking for an ANSI C-conforming const... yes checking for working volatile... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking size of unsigned long... 8 checking for size_t... yes checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for ld used by gcc... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld -m elf_x86_64 option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64 -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for variable argument list macro functionality... yes checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking whether the compiler defines __func__... yes checking whether the compiler defines __FUNC__... no checking whether the compiler sets __FUNCTION__... yes configure: ===== configuring mpl ===== configure: running /bin/bash ./configure --disable-option-checking '--prefix=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt' --disable-versioning --enable-embedded 'MAKE=/usr/bin/make' '--libdir=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib' 'CC=gcc' 'CFLAGS=-fPIC -fstack-protector -O3 -O2 ' 'AR=/usr/bin/ar' 'ARFLAGS=cr' 'CXX=g++' 'CXXFLAGS=-fstack-protector -O3 -fPIC -std=gnu++11 -O2' 'FFLAGS=-fPIC -ffree-line-length-0 -O3 -O2' 'FC=gfortran' 'F77=gfortran' 'FCFLAGS=-fPIC -ffree-line-length-0 -O3 -O2' '--enable-shared' '--with-device=ch3:sock' '--with-pm=hydra' '--enable-g=meminit' 'LDFLAGS=' 'LIBS=' 'CPPFLAGS= -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/mpl/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/mpl/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa/src -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa/src -D_REENTRANT -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/mpi/romio/include' 'MPLLIBNAME=mpl' --cache-file=/dev/null --srcdir=. checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... mkdir -p checking for gawk... gawk checking whether /usr/bin/make sets $(MAKE)... yes checking whether /usr/bin/make supports nested variables... yes checking for style of include used by /usr/bin/make... GNU checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... gcc3 checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking the archiver (/usr/bin/ar) interface... ar checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld -m elf_x86_64 -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64 -m elf_x86_64) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld -m elf_x86_64 -m elf_x86_64 option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64 -m elf_x86_64 -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether /usr/bin/make supports nested variables... (cached) yes checking for an ANSI C-conforming const... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking for variable argument list macro functionality... yes checking if C compiler supports __builtin_expect... yes checking for gcov... gcov checking whether the compiler supports __typeof(variable)... yes checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking for sys/types.h... (cached) yes checking sys/uio.h usability... yes checking sys/uio.h presence... yes checking for sys/uio.h... yes checking execinfo.h usability... yes checking execinfo.h presence... yes checking for execinfo.h... yes checking for unistd.h... (cached) yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking windows.h usability... no checking windows.h presence... no checking for windows.h... no checking sys/mman.h usability... yes checking sys/mman.h presence... yes checking for sys/mman.h... yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking valgrind.h usability... no checking valgrind.h presence... no checking for valgrind.h... no checking memcheck.h usability... no checking memcheck.h presence... no checking for memcheck.h... no checking valgrind/valgrind.h usability... yes checking valgrind/valgrind.h presence... yes checking for valgrind/valgrind.h... yes checking valgrind/memcheck.h usability... yes checking valgrind/memcheck.h presence... yes checking for valgrind/memcheck.h... yes checking helgrind.h usability... no checking helgrind.h presence... no checking for helgrind.h... no checking valgrind/helgrind.h usability... yes checking valgrind/helgrind.h presence... yes checking for valgrind/helgrind.h... yes checking drd.h usability... no checking drd.h presence... no checking for drd.h... no checking valgrind/drd.h usability... yes checking valgrind/drd.h presence... yes checking for valgrind/drd.h... yes checking whether the valgrind headers are broken or too old... no checking for clock_gettime... yes checking for clock_getres... yes checking for gethrtime... no checking for mach_absolute_time... no checking for gettimeofday... yes checking for library containing clock_gettime... none required checking for library containing clock_getres... none required checking whether struct timespec is defined in time.h... yes checking for CLOCK_REALTIME defined in time.h... yes configure: Timer type selected is CLOCK_GETTIME checking sched.h usability... yes checking sched.h presence... yes checking for sched.h... yes checking for unistd.h... (cached) yes checking sys/select.h usability... yes checking sys/select.h presence... yes checking for sys/select.h... yes checking for sched_yield... yes checking for yield... no checking for usleep... yes checking for sleep... yes checking for select... yes checking whether usleep needs a declaration... no checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for pthread_key_create in -lpthread... yes checking for pthread_yield... yes checking for pthread_key_create... yes checking for pthread_cleanup_push... no checking whether pthread_cleanup_push is available (may be a macro in pthread.h)... no configure: POSIX will be used for thread package. checking for thread local storage... _Thread_local checking for pthread_mutex_init... yes checking for pthread_mutexattr_setpshared... yes configure: POSIX will be used for interprocess mutex package. checking for mkstemp... yes checking whether mkstemp needs a declaration... no checking for fdopen... yes checking whether fdopen needs a declaration... no checking for getpid... yes checking for mmap... yes checking for munmap... yes configure: Using a memory-mapped file for shared memory checking for strdup... yes checking whether strdup needs a declaration... no checking for snprintf... yes checking whether snprintf needs a declaration... no checking for strncmp... yes checking whether strncmp needs a declaration... no checking for putenv... yes checking whether putenv needs a declaration... no checking for strerror... yes checking whether strerror needs a declaration... no checking for usleep... (cached) yes checking whether usleep needs a declaration... (cached) no checking for posix_memalign... yes checking for aligned_alloc... yes checking whether aligned_alloc needs a declaration... no checking for backtrace_symbols... yes checking whether backtrace_create_state is declared... no checking whether backtrace_print is declared... no checking for library containing gethostbyname... none required checking for library containing socket... none required checking ifaddrs.h usability... yes checking ifaddrs.h presence... yes checking for ifaddrs.h... yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking for inet_ntop... yes checking for getifaddrs... yes checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking for __attribute__((aligned))... yes checking for __attribute__((used))... yes checking for __attribute__((fallthrough))... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating localdefs config.status: creating include/mpl_timer.h config.status: creating include/config.h config.status: executing depfiles commands config.status: executing libtool commands config.status: executing prefix-config commands configure: ===== done with mpl configure ===== configure: sourcing mpl/localdefs checking for doxygen... no checking for gcov... gcov checking for ANSI C header files... (cached) yes checking for unistd.h... (cached) yes checking for strings.h... (cached) yes checking for sys/types.h... (cached) yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking sched.h usability... yes checking sched.h presence... yes checking for sched.h... yes checking for sys/stat.h... (cached) yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking netinet/tcp.h usability... yes checking netinet/tcp.h presence... yes checking for netinet/tcp.h... yes checking sys/un.h usability... yes checking sys/un.h presence... yes checking for sys/un.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking ifaddrs.h usability... yes checking ifaddrs.h presence... yes checking for ifaddrs.h... yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking poll.h usability... yes checking poll.h presence... yes checking for poll.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking winsock2.h usability... no checking winsock2.h presence... no checking for winsock2.h... no checking windows.h usability... no checking windows.h presence... no checking for windows.h... no checking for library containing socket... none required checking for library containing gethostbyname... none required checking for library containing hstrerror... none required checking for gettimeofday... yes checking for time... yes checking for sigaction... yes checking for signal... yes checking for usleep... yes checking for alloca... no checking for unsetenv... yes checking for strsignal... yes checking for stat... yes checking for fcntl... yes checking for alarm... yes checking for isatty... yes checking for inet_ntop... yes checking for getpgid... yes checking for setsid... yes checking for killpg... yes checking for hstrerror... yes checking whether hstrerror needs a declaration... no checking whether gettimeofday needs a declaration... no checking whether getpgid needs a declaration... no checking whether killpg needs a declaration... no checking for environ in unistd.h... yes checking bootstrap server... user,ssh,rsh,fork,slurm,ll,lsf,sge,pbs,cobalt,manual,persist checking tm.h usability... no checking tm.h presence... no checking for tm.h... no checking for tm_init in -ltorque... no checking process manager... pmiserv checking user interface... mpich checking desired processor topology libraries... hwloc checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for X... libraries , headers ### ### Configuring hwloc core ### checking hwloc building mode... embedded configure: hwloc builddir: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc configure: hwloc srcdir: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc checking for hwloc version... 2.0.3rc2-git checking if want hwloc maintainer support... disabled (embedded mode) checking for hwloc directory prefix... tools/topo/hwloc/hwloc/ checking for hwloc symbol prefix... hwloc_ checking for gcc option to accept ISO C99... none needed checking size of void *... 8 checking which OS support to include... Linux checking which CPU support to include... x86_64 checking size of unsigned long... (cached) 8 checking size of unsigned int... 4 checking for the C compiler vendor... gnu checking for __attribute__... yes checking for __attribute__(aligned)... yes checking for __attribute__(always_inline)... yes checking for __attribute__(cold)... yes checking for __attribute__(const)... yes checking for __attribute__(deprecated)... yes checking for __attribute__(format)... yes checking for __attribute__(hot)... yes checking for __attribute__(malloc)... yes checking for __attribute__(may_alias)... yes checking for __attribute__(no_instrument_function)... yes checking for __attribute__(nonnull)... yes checking for __attribute__(noreturn)... yes checking for __attribute__(packed)... yes checking for __attribute__(pure)... yes checking for __attribute__(sentinel)... yes checking for __attribute__(unused)... yes checking for __attribute__(warn_unused_result)... yes checking for __attribute__(weak_alias)... yes checking if gcc supports -fvisibility=hidden... yes checking whether to enable symbol visibility... yes (via -fvisibility=hidden) checking whether the C compiler rejects function calls with too many arguments... yes checking whether the C compiler rejects function calls with too few arguments... yes checking for unistd.h... (cached) yes checking dirent.h usability... yes checking dirent.h presence... yes checking for dirent.h... yes checking for strings.h... (cached) yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking for strcasecmp... yes checking whether strcasecmp is declared... yes checking whether function strcasecmp has a complete prototype... yes checking for strncasecmp... yes checking whether strncasecmp is declared... yes checking whether function strncasecmp has a complete prototype... yes checking for strftime... yes checking for setlocale... yes checking for stdint.h... (cached) yes checking sys/mman.h usability... yes checking sys/mman.h presence... yes checking for sys/mman.h... yes checking for KAFFINITY... no checking for PROCESSOR_CACHE_TYPE... no checking for CACHE_DESCRIPTOR... no checking for LOGICAL_PROCESSOR_RELATIONSHIP... no checking for RelationProcessorPackage... no checking for SYSTEM_LOGICAL_PROCESSOR_INFORMATION... no checking for GROUP_AFFINITY... no checking for PROCESSOR_RELATIONSHIP... no checking for NUMA_NODE_RELATIONSHIP... no checking for CACHE_RELATIONSHIP... no checking for PROCESSOR_GROUP_INFO... no checking for GROUP_RELATIONSHIP... no checking for SYSTEM_LOGICAL_PROCESSOR_INFORMATION_EX... no checking for PSAPI_WORKING_SET_EX_BLOCK... no checking for PSAPI_WORKING_SET_EX_INFORMATION... no checking for PROCESSOR_NUMBER... no checking for main in -lgdi32... no checking for PostQuitMessage in -luser32... no checking for windows.h... (cached) no checking sys/lgrp_user.h usability... no checking sys/lgrp_user.h presence... no checking for sys/lgrp_user.h... no checking kstat.h usability... no checking kstat.h presence... no checking for kstat.h... no checking whether fabsf is declared... yes checking for fabsf in -lm... yes checking whether modff is declared... yes checking for modff in -lm... yes checking picl.h usability... no checking picl.h presence... no checking for picl.h... no checking whether _SC_NPROCESSORS_ONLN is declared... yes checking whether _SC_NPROCESSORS_CONF is declared... yes checking whether _SC_NPROC_ONLN is declared... no checking whether _SC_NPROC_CONF is declared... no checking whether _SC_PAGESIZE is declared... yes checking whether _SC_PAGE_SIZE is declared... yes checking whether _SC_LARGE_PAGESIZE is declared... no checking mach/mach_host.h usability... no checking mach/mach_host.h presence... no checking for mach/mach_host.h... no checking mach/mach_init.h usability... no checking mach/mach_init.h presence... no checking for mach/mach_init.h... no checking for sys/param.h... (cached) yes checking for sys/sysctl.h... yes checking whether CTL_HW is declared... no checking whether HW_NCPU is declared... no checking whether strtoull is declared... yes checking for ssize_t... yes checking whether snprintf is declared... yes checking whether _strdup is declared... no checking whether _putenv is declared... no checking whether getprogname is declared... no checking whether getexecname is declared... no checking whether GetModuleFileName is declared... no checking for program_invocation_name... yes checking for __progname... yes checking for pthread_t... yes checking whether sched_getcpu is declared... yes checking whether sched_setaffinity is declared... yes checking whether function sched_setaffinity has a complete prototype... yes checking for old prototype of sched_setaffinity... no checking for working CPU_SET... yes checking for working CPU_SET_S... yes checking for working syscall with 6 parameters... yes checking for lib... no checking for bash... /bin/bash checking for ffs... yes checking whether ffs is declared... yes checking whether function ffs has a complete prototype... yes checking for ffsl... yes checking whether ffsl is declared... yes checking whether function ffsl has a complete prototype... yes checking for fls... no checking for flsl... no checking for clz... no checking for clzl... no checking for openat... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking for getpagesize... yes checking for memalign... yes checking for posix_memalign... yes checking sys/utsname.h usability... yes checking sys/utsname.h presence... yes checking for sys/utsname.h... yes checking for uname... yes checking pthread_np.h usability... no checking pthread_np.h presence... no checking for pthread_np.h... no checking whether pthread_setaffinity_np is declared... yes checking whether pthread_getaffinity_np is declared... yes checking for sched_setaffinity... yes checking for sys/cpuset.h... no checking for cpuset_setaffinity... no checking for library containing pthread_getthrds_np... no checking for cpuset_setid... no checking libudev.h usability... no checking libudev.h presence... no checking for libudev.h... no checking for PCIACCESS... no checking pciaccess.h usability... no checking pciaccess.h presence... no checking for pciaccess.h... no checking CL/cl_ext.h usability... no checking CL/cl_ext.h presence... no checking for CL/cl_ext.h... no checking cuda.h usability... no checking cuda.h presence... no checking for cuda.h... no checking cuda_runtime_api.h usability... no checking cuda_runtime_api.h presence... no checking for cuda_runtime_api.h... no checking nvml.h usability... no checking nvml.h presence... no checking for nvml.h... no checking for gethostbyname... yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... no checking X11/Xlib.h usability... yes checking X11/Xlib.h presence... yes checking for X11/Xlib.h... yes checking for XOpenDisplay in -lX11... yes checking for X11/Xutil.h... yes checking X11/keysym.h usability... yes checking X11/keysym.h presence... yes checking for X11/keysym.h... yes checking NVCtrl/NVCtrl.h usability... no checking NVCtrl/NVCtrl.h presence... no checking for NVCtrl/NVCtrl.h... no checking for LIBXML2... no checking for x86 cpuid... yes checking for pthread_mutex_lock... yes checking if plugin support is enabled... no checking components to build statically... noos xml synthetic xml_nolibxml linux linuxio x86 checking components to build as plugins... checking available processor topology libraries... hwloc checking slurm/slurm.h usability... no checking slurm/slurm.h presence... no checking for slurm/slurm.h... no checking for slurm_hostlist_create in -lslurm... no checking whether POSIX compliant regcomp()/regexec()... yes checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for pthread_key_create in -lpthread... yes checking checkpointing library... blcr checking libcr.h usability... yes checking libcr.h presence... yes checking for libcr.h... yes checking for cr_init in -lcr... yes checking demux engine... poll,select,port checking for poll... yes checking for select... yes checking debugging support... meminit checking error checking... yes checking warnings... no checking profiling... yes checking for strsignal... (cached) yes checking whether strsignal needs a declaration... no checking for sigaction... (cached) yes checking for signal... (cached) yes checking for sigset... yes checking for struct sigaction and sa_handler... yes checking for gethostname... yes checking whether gethostname needs a declaration... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating tools/topo/hwloc/hwloc/Makefile config.status: creating tools/topo/hwloc/hwloc/include/Makefile config.status: creating tools/topo/hwloc/hwloc/hwloc/Makefile config.status: creating Makefile config.status: creating tools/bootstrap/src/bsci_init.c config.status: creating hydra-doxygen.cfg config.status: creating include/hydra_config.h config.status: creating tools/topo/hwloc/hwloc/include/private/autogen/config.h config.status: creating tools/topo/hwloc/hwloc/include/hwloc/autogen/config.h config.status: executing depfiles commands config.status: executing libtool commands configure: ===== done with src/pm/hydra configure ===== checking size of OPA_ptr_t... 8 checking the sizeof MPI_Offset... 8 checking whether the Fortran Offset type works with Fortran 77... yes checking whether the Fortran Offset type works with Fortran 90... yes checking for size of MPI_Status... 20 checking for BSD/POSIX style global symbol lister... BSD style,/usr/bin/nm -g -B checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for multiple __attribute__((alias)) support... yes checking the minimum alignment of Fortran common block of 1 integers... 16 checking the minimum alignment of Fortran common block of 5 integers... 16, too small! reset to 32 configure: creating ./config.lt config.lt: creating libtool checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating src/hwloc/Makefile config.status: creating src/hwloc/include/Makefile config.status: creating src/hwloc/hwloc/Makefile config.status: creating src/binding/fortran/use_mpi/mpif90model.h config.status: creating Makefile config.status: creating examples/Makefile config.status: creating test/Makefile config.status: creating test/commands/Makefile config.status: creating src/include/mpichinfo.h config.status: creating mpich-doxygen config.status: creating src/include/mpir_ext.h config.status: creating src/binding/cxx/mpicxx.h config.status: creating src/binding/fortran/mpif_h/mpif.h config.status: creating src/binding/fortran/mpif_h/setbotf.f config.status: creating src/binding/fortran/mpif_h/setbot.c config.status: creating src/binding/fortran/use_mpi/mpi_sizeofs.f90 config.status: creating src/binding/fortran/use_mpi/mpi_base.f90 config.status: creating src/binding/fortran/use_mpi/mpi_constants.f90 config.status: creating src/binding/fortran/use_mpi_f08/mpi_f08_compile_constants.f90 config.status: creating src/binding/fortran/use_mpi_f08/mpi_c_interface_types.f90 config.status: creating src/packaging/pkgconfig/mpich.pc config.status: creating src/packaging/envmods/mpich.module config.status: creating src/env/mpixxx_opts.conf config.status: creating src/env/mpicc.sh config.status: creating src/env/mpicc.bash config.status: creating src/env/mpicxx.sh config.status: creating src/env/mpicxx.bash config.status: creating src/env/mpif77.sh config.status: creating src/env/mpif77.bash config.status: creating src/env/mpifort.sh config.status: creating src/env/mpifort.bash config.status: creating src/env/parkill config.status: creating src/include/mpi.h config.status: creating doc/design/Makefile config.status: creating doc/installguide/Makefile config.status: creating doc/logging/Makefile config.status: creating doc/refman/Makefile config.status: creating doc/userguide/Makefile config.status: creating test/commands/cmdtests config.status: creating src/include/mpichconf.h config.status: creating src/hwloc/include/private/autogen/config.h config.status: creating src/hwloc/include/hwloc/autogen/config.h config.status: executing depfiles commands config.status: executing libtool commands config.status: executing default-1 commands config.status: executing default-2 commands config.status: executing default-3 commands config.status: executing default-4 commands === configuring in test/mpi (/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi) configure: running /bin/bash ./configure --disable-option-checking '--prefix=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt' 'MAKE=/usr/bin/make' '--libdir=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib' 'CC=gcc' 'CFLAGS=-fPIC -fstack-protector -O3' 'AR=/usr/bin/ar' 'ARFLAGS=cr' 'CXX=g++' 'CXXFLAGS=-fstack-protector -O3 -fPIC -std=gnu++11' 'FFLAGS=-fPIC -ffree-line-length-0 -O3' 'FC=gfortran' 'F77=gfortran' 'FCFLAGS=-fPIC -ffree-line-length-0 -O3' '--enable-shared' '--with-device=ch3:sock' '--with-pm=hydra' '--enable-g=meminit' --cache-file=/dev/null --srcdir=. RUNNING CONFIGURE FOR MPI TESTS checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... mkdir -p checking for gawk... gawk checking whether /usr/bin/make sets $(MAKE)... yes checking whether /usr/bin/make supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... yes checking whether /usr/bin/make supports nested variables... (cached) yes checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for style of include used by /usr/bin/make... GNU checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... gcc3 checking whether long double is supported... yes checking whether long long is supported... yes checking for an ANSI C-conforming const... yes checking for C/C++ restrict keyword... __restrict checking for ranlib... ranlib checking the archiver (/usr/bin/ar) interface... ar checking for grep that handles long lines and -e... /bin/grep checking for fgrep... /bin/grep -F checking how to run the C preprocessor... gcc -E checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking sys/resource.h usability... yes checking sys/resource.h presence... yes checking for sys/resource.h... yes checking for int8_t... yes checking for int16_t... yes checking for int32_t... yes checking for int64_t... yes checking for uint8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for _Bool... yes checking for float _Complex... yes checking for double _Complex... yes checking for long double _Complex... yes checking size of void *... 8 checking for library containing socket... none required checking for library containing gethostbyname... none required checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for library containing pthread_create... -lpthread checking for library containing pthread_barrier_init... none required checking for pthread_create... yes checking for pthread_yield... yes checking for pthread_barrier_init... yes checking for pthread_barrier_wait... yes checking whether struct hostent contains h_addr_list... yes checking for getrusage... yes checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking whether integer*4 is supported... yes checking whether integer*8 is supported... yes checking whether integer*16 is supported... yes checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to get verbose linking output from gfortran... -v checking for Fortran 77 libraries of gfortran... -L/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/5/../../.. -lpthread -lgfortran -lm -lquadmath checking for Fortran 77 name mangling... lower uscore checking whether gfortran allows mismatched arguments... yes checking for Fortran libraries needed for getarg... none needed checking whether Fortran 77 supports Cray-style pointer... yes checking for Fortran 77 compiler flag for Cray-style pointer... -fcray-pointer checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking for extension for Fortran 90 programs... f90 checking whether the Fortran 90 compiler (gfortran -fPIC -ffree-line-length-0 -O3 ) works... yes checking whether the Fortran 90 compiler (gfortran -fPIC -ffree-line-length-0 -O3 ) is a cross-compiler... no checking for Fortran flag needed to accept free-form source... none checking whether Fortran 90 supports Cray-style pointer... yes checking for Fortran 90 compiler flag for Cray-style pointer... -fcray-pointer checking whether gfortran supports the Fortran 2003 routines to access the commandline... yes checking for Fortran 90 module extension... mod checking for Fortran 90 module include flag... -I checking for Fortran 90 module output directory flag... -J checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking whether available... yes checking whether the compiler implements namespaces... yes checking whether the compiler implements the namespace std... yes checking whether MPI_2DOUBLE_COMPLEX is available... no checking whether MPI_2COMPLEX is available... no checking size of void *... (cached) 8 checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking size of short... 2 checking for C integer type of address size... long checking for perl... /usr/bin/perl checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating maint/testmerge config.status: creating runtests config.status: creating checktests config.status: creating Makefile config.status: creating basic/Makefile config.status: creating attr/Makefile config.status: creating attr/testlist config.status: creating util/Makefile config.status: creating coll/Makefile config.status: creating coll/testlist config.status: creating comm/Makefile config.status: creating datatype/Makefile config.status: creating datatype/testlist config.status: creating errhan/Makefile config.status: creating group/Makefile config.status: creating info/Makefile config.status: creating init/Makefile config.status: creating pt2pt/Makefile config.status: creating pt2pt/testlist config.status: creating mpi_t/Makefile config.status: creating rma/Makefile config.status: creating rma/testlist config.status: creating spawn/Makefile config.status: creating spawn/testlist config.status: creating topo/Makefile config.status: creating io/Makefile config.status: creating io/testlist config.status: creating f77/Makefile config.status: creating f77/attr/Makefile config.status: creating f77/attr/attraints.h config.status: creating f77/pt2pt/attr1aints.h config.status: creating f77/ext/add1size.h config.status: creating f77/datatype/Makefile config.status: creating f77/datatype/typeaints.h config.status: creating f77/util/Makefile config.status: creating f77/coll/Makefile config.status: creating f77/comm/Makefile config.status: creating f77/topo/Makefile config.status: creating f77/init/Makefile config.status: creating f77/rma/addsize.h config.status: creating f77/pt2pt/Makefile config.status: creating f77/info/Makefile config.status: creating f77/spawn/Makefile config.status: creating f77/spawn/testlist config.status: creating f77/spawn/type1aint.h config.status: creating f77/rma/Makefile config.status: creating f77/ext/Makefile config.status: creating f77/ext/testlist config.status: creating f77/io/Makefile config.status: creating f77/io/iooffset.h config.status: creating f77/io/iodisp.h config.status: creating f77/io/ioaint.h config.status: creating f77/io/testlist config.status: creating f77/profile/Makefile config.status: creating f90/Makefile config.status: creating f90/attr/Makefile config.status: creating f90/datatype/Makefile config.status: creating f90/f90types/Makefile config.status: creating f90/util/Makefile config.status: creating f90/coll/Makefile config.status: creating f90/comm/Makefile config.status: creating f90/topo/Makefile config.status: creating f90/init/Makefile config.status: creating f90/pt2pt/Makefile config.status: creating f90/rma/Makefile config.status: creating f90/info/Makefile config.status: creating f90/spawn/Makefile config.status: creating f90/spawn/testlist config.status: creating f90/timer/Makefile config.status: creating f90/ext/Makefile config.status: creating f90/ext/testlist config.status: creating f90/io/Makefile config.status: creating f90/io/testlist config.status: creating f90/misc/Makefile config.status: creating f90/profile/Makefile config.status: creating f08/Makefile config.status: creating f08/attr/Makefile config.status: creating f08/datatype/Makefile config.status: creating f08/util/Makefile config.status: creating f08/coll/Makefile config.status: creating f08/comm/Makefile config.status: creating f08/pt2pt/Makefile config.status: creating f08/rma/Makefile config.status: creating f08/subarray/Makefile config.status: creating f08/topo/Makefile config.status: creating f08/io/Makefile config.status: creating f08/io/testlist config.status: creating f08/init/Makefile config.status: creating f08/info/Makefile config.status: creating f08/spawn/Makefile config.status: creating f08/spawn/testlist config.status: creating f08/timer/Makefile config.status: creating f08/ext/Makefile config.status: creating f08/misc/Makefile config.status: creating f08/profile/Makefile config.status: creating cxx/Makefile config.status: creating cxx/util/Makefile config.status: creating cxx/attr/Makefile config.status: creating cxx/attr/testlist config.status: creating cxx/pt2pt/Makefile config.status: creating cxx/comm/Makefile config.status: creating cxx/coll/Makefile config.status: creating cxx/errhan/Makefile config.status: creating cxx/info/Makefile config.status: creating cxx/datatype/Makefile config.status: creating cxx/datatype/testlist config.status: creating cxx/io/Makefile config.status: creating cxx/init/Makefile config.status: creating cxx/rma/Makefile config.status: creating cxx/spawn/Makefile config.status: creating cxx/spawn/testlist config.status: creating cxx/topo/Makefile config.status: creating threads/Makefile config.status: creating threads/pt2pt/Makefile config.status: creating threads/util/Makefile config.status: creating threads/comm/Makefile config.status: creating threads/comm/testlist config.status: creating threads/init/Makefile config.status: creating threads/mpi_t/Makefile config.status: creating threads/spawn/Makefile config.status: creating threads/rma/Makefile config.status: creating threads/coll/Makefile config.status: creating threads/coll/testlist config.status: creating errors/Makefile config.status: creating errors/attr/Makefile config.status: creating errors/basic/Makefile config.status: creating errors/coll/Makefile config.status: creating errors/comm/Makefile config.status: creating errors/datatype/Makefile config.status: creating errors/faults/Makefile config.status: creating errors/group/Makefile config.status: creating errors/pt2pt/Makefile config.status: creating errors/rma/Makefile config.status: creating errors/spawn/Makefile config.status: creating errors/spawn/testlist config.status: creating errors/topo/Makefile config.status: creating errors/io/Makefile config.status: creating errors/cxx/Makefile config.status: creating errors/cxx/errhan/Makefile config.status: creating errors/cxx/io/Makefile config.status: creating errors/f77/Makefile config.status: creating errors/f77/io/Makefile config.status: creating errors/f77/io/addsize.h config.status: creating errors/f77/io/iooffset.h config.status: creating errors/f90/Makefile config.status: creating errors/f90/io/Makefile config.status: creating errors/f08/Makefile config.status: creating errors/f08/io/Makefile config.status: creating ckpoint/Makefile config.status: creating ft/Makefile config.status: creating manual/Makefile config.status: creating manual/manyconnect config.status: creating manual/mpi_t/Makefile config.status: creating perf/Makefile config.status: creating testlist config.status: creating cxx/testlist config.status: creating cxx/topo/testlist config.status: creating f77/testlist config.status: creating f90/testlist config.status: creating f08/testlist config.status: creating threads/testlist config.status: creating errors/testlist config.status: creating errors/cxx/testlist config.status: creating errors/f77/testlist config.status: creating errors/f90/testlist config.status: creating impls/testlist config.status: creating f77/rma/testlist config.status: creating f90/rma/testlist config.status: creating f08/rma/testlist config.status: creating impls/Makefile config.status: creating impls/hydra/Makefile config.status: creating impls/hydra/proc_binding.sh config.status: creating impls/mpich/Makefile config.status: creating impls/mpich/testlist config.status: creating impls/mpich/mpi_t/Makefile config.status: creating include/mpitestconf.h config.status: executing depfiles commands config.status: executing default-1 commands config.status: executing default-2 commands config.status: executing default-3 commands config.status: executing default-4 commands === configuring in dtpools (/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/dtpools) configure: running /bin/bash ./configure --disable-option-checking '--prefix=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt' 'MAKE=/usr/bin/make' '--libdir=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib' 'CC=gcc' 'CFLAGS=-fPIC -fstack-protector -O3' 'AR=/usr/bin/ar' 'ARFLAGS=cr' 'CXX=g++' 'CXXFLAGS=-fstack-protector -O3 -fPIC -std=gnu++11' 'FFLAGS=-fPIC -ffree-line-length-0 -O3' 'FC=gfortran' 'F77=gfortran' 'FCFLAGS=-fPIC -ffree-line-length-0 -O3' '--enable-shared' '--with-device=ch3:sock' '--with-pm=hydra' '--enable-g=meminit' 'master_top_builddir=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2' 'master_top_srcdir=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2' 'FROM_MPICH=yes' 'MPICH_THREAD_LEVEL=MPI_THREAD_MULTIPLE' 'MPICH_ENABLE_F77=yes' 'MPICH_ENABLE_FC=yes' 'MPICH_ENABLE_CXX=yes' 'MPI_NO_SPAWN=' 'MPI_NO_RMA=' 'WRAPPER_CFLAGS=-fPIC -fstack-protector -O3' 'WRAPPER_CPPFLAGS=' 'WRAPPER_LDFLAGS=' 'WRAPPER_LIBS=-lm -lbacktrace -lpthread -lrt ' 'WRAPPER_FFLAGS=-fPIC -ffree-line-length-0 -O3' 'WRAPPER_FCFLAGS=-fPIC -ffree-line-length-0 -O3' 'WRAPPER_CXXFLAGS=-fstack-protector -O3 -fPIC -std=gnu++11' 'LDFLAGS=' 'LIBS=' 'CPPFLAGS= -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/mpl/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/mpl/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa/src -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa/src -D_REENTRANT -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/mpi/romio/include' 'MPI_SIZEOF_AINT=8' 'MPI_SIZEOF_OFFSET=8' --cache-file=/dev/null --srcdir=. checking for gawk... gawk checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking how to run the C preprocessor... gcc -E checking for a BSD-compatible install... /usr/bin/install -c checking whether ln -s works... yes checking whether /usr/bin/make sets $(MAKE)... yes checking whether build environment is sane... yes checking for a thread-safe mkdir -p... mkdir -p checking for style of include used by /usr/bin/make... GNU checking whether /usr/bin/make supports nested variables... yes checking dependency style of gcc... gcc3 checking whether /usr/bin/make supports nested variables... (cached) yes checking whether to enable maintainer-specific portions of Makefiles... yes checking the archiver (/usr/bin/ar) interface... ar checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld -m elf_x86_64 option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64 -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for stdint.h... (cached) yes checking for sys/types.h... (cached) yes checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes checking for memset... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating include/Makefile config.status: creating src/Makefile config.status: creating dtpoolsconf.h config.status: executing depfiles commands config.status: executing libtool commands Configuration completed. =============================================================================== Running make on MPICH; this may take several minutes =============================================================================== Running Executable WITHOUT threads to time it out Executing: /usr/bin/make clean stdout: Making clean in src/mpl make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/mpl' rm -f strsep test -z "" || rm -f rm -rf .libs _libs rm -rf src/bt/.libs src/bt/_libs rm -rf src/dbg/.libs src/dbg/_libs rm -rf src/env/.libs src/env/_libs rm -rf src/mem/.libs src/mem/_libs rm -rf src/msg/.libs src/msg/_libs rm -rf src/shm/.libs src/shm/_libs rm -rf src/sock/.libs src/sock/_libs rm -rf src/str/.libs src/str/_libs rm -rf src/thread/.libs src/thread/_libs rm -rf src/timer/.libs src/timer/_libs test -z "libmpl.la" || rm -f libmpl.la rm -f ./so_locations rm -f *.o rm -f src/bt/*.o rm -f src/bt/*.lo rm -f src/dbg/*.o rm -f src/dbg/*.lo rm -f src/env/*.o rm -f src/env/*.lo rm -f src/mem/*.o rm -f src/mem/*.lo rm -f src/msg/*.o rm -f src/msg/*.lo rm -f src/shm/*.o rm -f src/shm/*.lo rm -f src/sock/*.o rm -f src/sock/*.lo rm -f src/str/*.o rm -f src/str/*.lo rm -f src/thread/*.o rm -f src/thread/*.lo rm -f src/timer/*.o rm -f src/timer/*.lo rm -f test/*.o test -z "strsep.log" || rm -f strsep.log test -z "strsep.trs" || rm -f strsep.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/mpl' Making clean in src/openpa make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa' Making clean in src make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa/src' rm -rf .libs _libs test -z "libopa.la" || rm -f libopa.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa/src' Making clean in test make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa/test' rm -f sanity test_primitives test_barriers test_queue rm -rf .libs _libs rm -f *.o test -z "sanity.log test_primitives.log test_barriers.log test_queue.log" || rm -f sanity.log test_primitives.log test_barriers.log test_queue.log test -z "sanity.trs test_primitives.trs test_barriers.trs test_queue.trs" || rm -f sanity.trs test_primitives.trs test_barriers.trs test_queue.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa/test' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa' rm -rf .libs _libs rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa' Making clean in src/hwloc make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc' Making clean in include make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc/include' rm -rf .libs _libs rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc/include' Making clean in hwloc make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc/hwloc' test -z "" || rm -f test -z "" || rm -f rm -rf .libs _libs test -z "libhwloc_embedded.la" || rm -f libhwloc_embedded.la rm -f ./so_locations test -z " " || rm -f rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc/hwloc' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc' rm -rf .libs _libs rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc' Making clean in src/mpi/romio make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/mpi/romio' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/mpi/romio' test -z "" || rm -f rm -rf .libs _libs rm -rf adio/ad_gpfs/.libs adio/ad_gpfs/_libs rm -rf adio/ad_gpfs/bg/.libs adio/ad_gpfs/bg/_libs rm -rf adio/ad_gpfs/pe/.libs adio/ad_gpfs/pe/_libs rm -rf adio/ad_ime/.libs adio/ad_ime/_libs rm -rf adio/ad_lustre/.libs adio/ad_lustre/_libs rm -rf adio/ad_nfs/.libs adio/ad_nfs/_libs rm -rf adio/ad_panfs/.libs adio/ad_panfs/_libs rm -rf adio/ad_pvfs2/.libs adio/ad_pvfs2/_libs rm -rf adio/ad_testfs/.libs adio/ad_testfs/_libs rm -rf adio/ad_ufs/.libs adio/ad_ufs/_libs rm -rf adio/ad_xfs/.libs adio/ad_xfs/_libs rm -rf adio/common/.libs adio/common/_libs rm -rf mpi-io/.libs mpi-io/_libs rm -rf mpi-io/fortran/.libs mpi-io/fortran/_libs rm -rf mpi-io/glue/.libs mpi-io/glue/_libs rm -rf mpi-io/glue/default/.libs mpi-io/glue/default/_libs rm -rf mpi-io/glue/mpich/.libs mpi-io/glue/mpich/_libs test -z "libromio.la " || rm -f libromio.la rm -f ./so_locations rm -f *.o rm -f adio/ad_gpfs/*.o rm -f adio/ad_gpfs/*.lo rm -f adio/ad_gpfs/bg/*.o rm -f adio/ad_gpfs/bg/*.lo rm -f adio/ad_gpfs/pe/*.o rm -f adio/ad_gpfs/pe/*.lo rm -f adio/ad_ime/*.o rm -f adio/ad_ime/*.lo rm -f adio/ad_lustre/*.o rm -f adio/ad_lustre/*.lo rm -f adio/ad_nfs/*.o rm -f adio/ad_nfs/*.lo rm -f adio/ad_panfs/*.o rm -f adio/ad_panfs/*.lo rm -f adio/ad_pvfs2/*.o rm -f adio/ad_pvfs2/*.lo rm -f adio/ad_testfs/*.o rm -f adio/ad_testfs/*.lo rm -f adio/ad_ufs/*.o rm -f adio/ad_ufs/*.lo rm -f adio/ad_xfs/*.o rm -f adio/ad_xfs/*.lo rm -f adio/common/*.o rm -f adio/common/*.lo rm -f mpi-io/*.o rm -f mpi-io/*.lo rm -f mpi-io/fortran/*.o rm -f mpi-io/fortran/*.lo rm -f mpi-io/glue/*.o rm -f mpi-io/glue/*.lo rm -f mpi-io/glue/default/*.o rm -f mpi-io/glue/default/*.lo rm -f mpi-io/glue/mpich/*.o rm -f mpi-io/glue/mpich/*.lo rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/mpi/romio' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/mpi/romio' Making clean in src/pm/hydra make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra' Making clean in mpl make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/mpl' rm -f strsep test -z "" || rm -f rm -rf .libs _libs rm -rf src/bt/.libs src/bt/_libs rm -rf src/dbg/.libs src/dbg/_libs rm -rf src/env/.libs src/env/_libs rm -rf src/mem/.libs src/mem/_libs rm -rf src/msg/.libs src/msg/_libs rm -rf src/shm/.libs src/shm/_libs rm -rf src/sock/.libs src/sock/_libs rm -rf src/str/.libs src/str/_libs rm -rf src/thread/.libs src/thread/_libs rm -rf src/timer/.libs src/timer/_libs test -z "libmpl.la" || rm -f libmpl.la rm -f ./so_locations rm -f *.o rm -f src/bt/*.o rm -f src/bt/*.lo rm -f src/dbg/*.o rm -f src/dbg/*.lo rm -f src/env/*.o rm -f src/env/*.lo rm -f src/mem/*.o rm -f src/mem/*.lo rm -f src/msg/*.o rm -f src/msg/*.lo rm -f src/shm/*.o rm -f src/shm/*.lo rm -f src/sock/*.o rm -f src/sock/*.lo rm -f src/str/*.o rm -f src/str/*.lo rm -f src/thread/*.o rm -f src/thread/*.lo rm -f src/timer/*.o rm -f src/timer/*.lo rm -f test/*.o test -z "strsep.log" || rm -f strsep.log test -z "strsep.trs" || rm -f strsep.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/mpl' Making clean in tools/topo/hwloc/hwloc make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc' Making clean in include make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/include' rm -rf .libs _libs rm -f *.lo make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/include' Making clean in hwloc make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/hwloc' test -z "" || rm -f test -z "" || rm -f rm -rf .libs _libs test -z "libhwloc_embedded.la" || rm -f libhwloc_embedded.la rm -f ./so_locations test -z " " || rm -f rm -f *.o rm -f *.lo make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/hwloc' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc' rm -rf .libs _libs rm -f *.lo make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc' Making clean in . make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra' rm -f hydra_persist hydra_nameserver hydra_pmi_proxy mpiexec.hydra rm -rf .libs _libs rm -rf pm/pmiserv/.libs pm/pmiserv/_libs rm -rf tools/bootstrap/external/.libs tools/bootstrap/external/_libs rm -rf tools/bootstrap/persist/.libs tools/bootstrap/persist/_libs rm -rf tools/bootstrap/src/.libs tools/bootstrap/src/_libs rm -rf tools/bootstrap/utils/.libs tools/bootstrap/utils/_libs rm -rf tools/ckpoint/.libs tools/ckpoint/_libs rm -rf tools/ckpoint/blcr/.libs tools/ckpoint/blcr/_libs rm -rf tools/debugger/.libs tools/debugger/_libs rm -rf tools/demux/.libs tools/demux/_libs rm -rf tools/topo/.libs tools/topo/_libs rm -rf tools/topo/hwloc/.libs tools/topo/hwloc/_libs rm -rf ui/utils/.libs ui/utils/_libs rm -rf utils/alloc/.libs utils/alloc/_libs rm -rf utils/args/.libs utils/args/_libs rm -rf utils/dbg/.libs utils/dbg/_libs rm -rf utils/env/.libs utils/env/_libs rm -rf utils/launch/.libs utils/launch/_libs rm -rf utils/others/.libs utils/others/_libs rm -rf utils/signals/.libs utils/signals/_libs rm -rf utils/sock/.libs utils/sock/_libs rm -rf utils/string/.libs utils/string/_libs test -z "libhydra.la libpm.la" || rm -f libhydra.la libpm.la rm -f ./so_locations rm -f *.o rm -f pm/pmiserv/*.o rm -f pm/pmiserv/*.lo rm -f tools/bootstrap/external/*.o rm -f tools/bootstrap/external/*.lo rm -f tools/bootstrap/persist/*.o rm -f tools/bootstrap/persist/*.lo rm -f tools/bootstrap/src/*.o rm -f tools/bootstrap/src/*.lo rm -f tools/bootstrap/utils/*.o rm -f tools/bootstrap/utils/*.lo rm -f tools/ckpoint/*.o rm -f tools/ckpoint/*.lo rm -f tools/ckpoint/blcr/*.o rm -f tools/ckpoint/blcr/*.lo rm -f tools/debugger/*.o rm -f tools/debugger/*.lo rm -f tools/demux/*.o rm -f tools/demux/*.lo rm -f tools/nameserver/*.o rm -f tools/topo/*.o rm -f tools/topo/*.lo rm -f tools/topo/hwloc/*.o rm -f tools/topo/hwloc/*.lo rm -f ui/mpich/*.o rm -f ui/utils/*.o rm -f ui/utils/*.lo rm -f utils/alloc/*.o rm -f utils/alloc/*.lo rm -f utils/args/*.o rm -f utils/args/*.lo rm -f utils/dbg/*.o rm -f utils/dbg/*.lo rm -f utils/env/*.o rm -f utils/env/*.lo rm -f utils/launch/*.o rm -f utils/launch/*.lo rm -f utils/others/*.o rm -f utils/others/*.lo rm -f utils/signals/*.o rm -f utils/signals/*.lo rm -f utils/sock/*.o rm -f utils/sock/*.lo rm -f utils/string/*.o rm -f utils/string/*.lo rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra' Making clean in . make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2' rm -f src/env/mpichversion src/env/mpivars test -z "src/binding/fortran/use_mpi/mpi.mod-stamp src/binding/fortran/use_mpi/mpi.mod src/binding/fortran/use_mpi/mpi.lo src/binding/fortran/use_mpi/mpi-tmp src/binding/fortran/use_mpi/mpi_constants.mod-stamp src/binding/fortran/use_mpi/mpi_constants.mod src/binding/fortran/use_mpi/mpi_constants.lo src/binding/fortran/use_mpi/mpi_constants-tmp src/binding/fortran/use_mpi/mpi_sizeofs.mod-stamp src/binding/fortran/use_mpi/mpi_sizeofs.mod src/binding/fortran/use_mpi/mpi_sizeofs.lo src/binding/fortran/use_mpi/mpi_sizeofs-tmp src/binding/fortran/use_mpi/mpi_base.mod-stamp src/binding/fortran/use_mpi/mpi_base.mod src/binding/fortran/use_mpi/mpi_base.lo src/binding/fortran/use_mpi/mpi_base-tmp src/binding/fortran/use_mpi/mpifnoext.h src/binding/fortran/use_mpi/mpi.mod src/binding/fortran/use_mpi/mpi_sizeofs.mod src/binding/fortran/use_mpi/mpi_constants.mod src/binding/fortran/use_mpi/mpi_base.mod " || rm -f src/binding/fortran/use_mpi/mpi.mod-stamp src/binding/fortran/use_mpi/mpi.mod src/binding/fortran/use_mpi/mpi.lo src/binding/fortran/use_mpi/mpi-tmp src/binding/fortran/use_mpi/mpi_constants.mod-stamp src/binding/fortran/use_mpi/mpi_constants.mod src/binding/fortran/use_mpi/mpi_constants.lo src/binding/fortran/use_mpi/mpi_constants-tmp src/binding/fortran/use_mpi/mpi_sizeofs.mod-stamp src/binding/fortran/use_mpi/mpi_sizeofs.mod src/binding/fortran/use_mpi/mpi_sizeofs.lo src/binding/fortran/use_mpi/mpi_sizeofs-tmp src/binding/fortran/use_mpi/mpi_base.mod-stamp src/binding/fortran/use_mpi/mpi_base.mod src/binding/fortran/use_mpi/mpi_base.lo src/binding/fortran/use_mpi/mpi_base-tmp src/binding/fortran/use_mpi/mpifnoext.h src/binding/fortran/use_mpi/mpi.mod src/binding/fortran/use_mpi/mpi_sizeofs.mod src/binding/fortran/use_mpi/mpi_constants.mod src/binding/fortran/use_mpi/mpi_base.mod test -z " lib/libmpi.la lib/libmpifort.la lib/libmpicxx.la" || rm -f lib/libmpi.la lib/libmpifort.la lib/libmpicxx.la rm -f lib/so_locations rm -rf .libs _libs rm -rf lib/.libs lib/_libs rm -rf src/binding/cxx/.libs src/binding/cxx/_libs rm -rf src/binding/fortran/mpif_h/.libs src/binding/fortran/mpif_h/_libs rm -rf src/binding/fortran/use_mpi/.libs src/binding/fortran/use_mpi/_libs rm -rf src/binding/fortran/use_mpi_f08/.libs src/binding/fortran/use_mpi_f08/_libs rm -rf src/binding/fortran/use_mpi_f08/wrappers_c/.libs src/binding/fortran/use_mpi_f08/wrappers_c/_libs rm -rf src/binding/fortran/use_mpi_f08/wrappers_f/.libs src/binding/fortran/use_mpi_f08/wrappers_f/_libs rm -rf src/binding/fortran/use_mpi_f08/wrappers_f/profiling/.libs src/binding/fortran/use_mpi_f08/wrappers_f/profiling/_libs rm -rf src/env/.libs src/env/_libs rm -rf src/glue/romio/.libs src/glue/romio/_libs rm -rf src/mpi/attr/.libs src/mpi/attr/_libs rm -rf src/mpi/coll/.libs src/mpi/coll/_libs rm -rf src/mpi/coll/algorithms/recexchalgo/.libs src/mpi/coll/algorithms/recexchalgo/_libs rm -rf src/mpi/coll/algorithms/stubalgo/.libs src/mpi/coll/algorithms/stubalgo/_libs rm -rf src/mpi/coll/algorithms/treealgo/.libs src/mpi/coll/algorithms/treealgo/_libs rm -rf src/mpi/coll/allgather/.libs src/mpi/coll/allgather/_libs rm -rf src/mpi/coll/allgatherv/.libs src/mpi/coll/allgatherv/_libs rm -rf src/mpi/coll/allreduce/.libs src/mpi/coll/allreduce/_libs rm -rf src/mpi/coll/allreduce_group/.libs src/mpi/coll/allreduce_group/_libs rm -rf src/mpi/coll/alltoall/.libs src/mpi/coll/alltoall/_libs rm -rf src/mpi/coll/alltoallv/.libs src/mpi/coll/alltoallv/_libs rm -rf src/mpi/coll/alltoallw/.libs src/mpi/coll/alltoallw/_libs rm -rf src/mpi/coll/barrier/.libs src/mpi/coll/barrier/_libs rm -rf src/mpi/coll/bcast/.libs src/mpi/coll/bcast/_libs rm -rf src/mpi/coll/exscan/.libs src/mpi/coll/exscan/_libs rm -rf src/mpi/coll/gather/.libs src/mpi/coll/gather/_libs rm -rf src/mpi/coll/gatherv/.libs src/mpi/coll/gatherv/_libs rm -rf src/mpi/coll/iallgather/.libs src/mpi/coll/iallgather/_libs rm -rf src/mpi/coll/iallgatherv/.libs src/mpi/coll/iallgatherv/_libs rm -rf src/mpi/coll/iallreduce/.libs src/mpi/coll/iallreduce/_libs rm -rf src/mpi/coll/ialltoall/.libs src/mpi/coll/ialltoall/_libs rm -rf src/mpi/coll/ialltoallv/.libs src/mpi/coll/ialltoallv/_libs rm -rf src/mpi/coll/ialltoallw/.libs src/mpi/coll/ialltoallw/_libs rm -rf src/mpi/coll/ibarrier/.libs src/mpi/coll/ibarrier/_libs rm -rf src/mpi/coll/ibcast/.libs src/mpi/coll/ibcast/_libs rm -rf src/mpi/coll/iexscan/.libs src/mpi/coll/iexscan/_libs rm -rf src/mpi/coll/igather/.libs src/mpi/coll/igather/_libs rm -rf src/mpi/coll/igatherv/.libs src/mpi/coll/igatherv/_libs rm -rf src/mpi/coll/ineighbor_allgather/.libs src/mpi/coll/ineighbor_allgather/_libs rm -rf src/mpi/coll/ineighbor_allgatherv/.libs src/mpi/coll/ineighbor_allgatherv/_libs rm -rf src/mpi/coll/ineighbor_alltoall/.libs src/mpi/coll/ineighbor_alltoall/_libs rm -rf src/mpi/coll/ineighbor_alltoallv/.libs src/mpi/coll/ineighbor_alltoallv/_libs rm -rf src/mpi/coll/ineighbor_alltoallw/.libs src/mpi/coll/ineighbor_alltoallw/_libs rm -rf src/mpi/coll/ireduce/.libs src/mpi/coll/ireduce/_libs rm -rf src/mpi/coll/ireduce_scatter/.libs src/mpi/coll/ireduce_scatter/_libs rm -rf src/mpi/coll/ireduce_scatter_block/.libs src/mpi/coll/ireduce_scatter_block/_libs rm -rf src/mpi/coll/iscan/.libs src/mpi/coll/iscan/_libs rm -rf src/mpi/coll/iscatter/.libs src/mpi/coll/iscatter/_libs rm -rf src/mpi/coll/iscatterv/.libs src/mpi/coll/iscatterv/_libs rm -rf src/mpi/coll/neighbor_allgather/.libs src/mpi/coll/neighbor_allgather/_libs rm -rf src/mpi/coll/neighbor_allgatherv/.libs src/mpi/coll/neighbor_allgatherv/_libs rm -rf src/mpi/coll/neighbor_alltoall/.libs src/mpi/coll/neighbor_alltoall/_libs rm -rf src/mpi/coll/neighbor_alltoallv/.libs src/mpi/coll/neighbor_alltoallv/_libs rm -rf src/mpi/coll/neighbor_alltoallw/.libs src/mpi/coll/neighbor_alltoallw/_libs rm -rf src/mpi/coll/op/.libs src/mpi/coll/op/_libs rm -rf src/mpi/coll/reduce/.libs src/mpi/coll/reduce/_libs rm -rf src/mpi/coll/reduce_local/.libs src/mpi/coll/reduce_local/_libs rm -rf src/mpi/coll/reduce_scatter/.libs src/mpi/coll/reduce_scatter/_libs rm -rf src/mpi/coll/reduce_scatter_block/.libs src/mpi/coll/reduce_scatter_block/_libs rm -rf src/mpi/coll/scan/.libs src/mpi/coll/scan/_libs rm -rf src/mpi/coll/scatter/.libs src/mpi/coll/scatter/_libs rm -rf src/mpi/coll/scatterv/.libs src/mpi/coll/scatterv/_libs rm -rf src/mpi/coll/src/.libs src/mpi/coll/src/_libs rm -rf src/mpi/coll/transports/gentran/.libs src/mpi/coll/transports/gentran/_libs rm -rf src/mpi/coll/transports/stubtran/.libs src/mpi/coll/transports/stubtran/_libs rm -rf src/mpi/comm/.libs src/mpi/comm/_libs rm -rf src/mpi/datatype/.libs src/mpi/datatype/_libs rm -rf src/mpi/datatype/dataloop/.libs src/mpi/datatype/dataloop/_libs rm -rf src/mpi/debugger/.libs src/mpi/debugger/_libs rm -rf src/mpi/errhan/.libs src/mpi/errhan/_libs rm -rf src/mpi/group/.libs src/mpi/group/_libs rm -rf src/mpi/info/.libs src/mpi/info/_libs rm -rf src/mpi/init/.libs src/mpi/init/_libs rm -rf src/mpi/misc/.libs src/mpi/misc/_libs rm -rf src/mpi/pt2pt/.libs src/mpi/pt2pt/_libs rm -rf src/mpi/request/.libs src/mpi/request/_libs rm -rf src/mpi/rma/.libs src/mpi/rma/_libs rm -rf src/mpi/spawn/.libs src/mpi/spawn/_libs rm -rf src/mpi/timer/.libs src/mpi/timer/_libs rm -rf src/mpi/topo/.libs src/mpi/topo/_libs rm -rf src/mpi_t/.libs src/mpi_t/_libs rm -rf src/mpid/ch3/channels/nemesis/netmod/llc/.libs src/mpid/ch3/channels/nemesis/netmod/llc/_libs rm -rf src/mpid/ch3/channels/nemesis/netmod/mxm/.libs src/mpid/ch3/channels/nemesis/netmod/mxm/_libs rm -rf src/mpid/ch3/channels/nemesis/netmod/none/.libs src/mpid/ch3/channels/nemesis/netmod/none/_libs rm -rf src/mpid/ch3/channels/nemesis/netmod/ofi/.libs src/mpid/ch3/channels/nemesis/netmod/ofi/_libs rm -rf src/mpid/ch3/channels/nemesis/netmod/portals4/.libs src/mpid/ch3/channels/nemesis/netmod/portals4/_libs rm -rf src/mpid/ch3/channels/nemesis/netmod/tcp/.libs src/mpid/ch3/channels/nemesis/netmod/tcp/_libs rm -rf src/mpid/ch3/channels/nemesis/src/.libs src/mpid/ch3/channels/nemesis/src/_libs rm -rf src/mpid/ch3/channels/nemesis/utils/monitor/.libs src/mpid/ch3/channels/nemesis/utils/monitor/_libs rm -rf src/mpid/ch3/channels/nemesis/utils/replacements/.libs src/mpid/ch3/channels/nemesis/utils/replacements/_libs rm -rf src/mpid/ch3/channels/sock/src/.libs src/mpid/ch3/channels/sock/src/_libs rm -rf src/mpid/ch3/src/.libs src/mpid/ch3/src/_libs rm -rf src/mpid/ch3/util/ftb/.libs src/mpid/ch3/util/ftb/_libs rm -rf src/mpid/ch3/util/sock/.libs src/mpid/ch3/util/sock/_libs rm -rf src/mpid/ch4/generic/.libs src/mpid/ch4/generic/_libs rm -rf src/mpid/ch4/netmod/ofi/.libs src/mpid/ch4/netmod/ofi/_libs rm -rf src/mpid/ch4/netmod/portals4/.libs src/mpid/ch4/netmod/portals4/_libs rm -rf src/mpid/ch4/netmod/stubnm/.libs src/mpid/ch4/netmod/stubnm/_libs rm -rf src/mpid/ch4/netmod/ucx/.libs src/mpid/ch4/netmod/ucx/_libs rm -rf src/mpid/ch4/shm/posix/.libs src/mpid/ch4/shm/posix/_libs rm -rf src/mpid/ch4/shm/src/.libs src/mpid/ch4/shm/src/_libs rm -rf src/mpid/ch4/shm/stubshm/.libs src/mpid/ch4/shm/stubshm/_libs rm -rf src/mpid/ch4/src/.libs src/mpid/ch4/src/_libs rm -rf src/mpid/common/bc/.libs src/mpid/common/bc/_libs rm -rf src/mpid/common/hcoll/.libs src/mpid/common/hcoll/_libs rm -rf src/mpid/common/sched/.libs src/mpid/common/sched/_libs rm -rf src/mpid/common/shm/.libs src/mpid/common/shm/_libs rm -rf src/mutex/.libs src/mutex/_libs rm -rf src/nameserv/file/.libs src/nameserv/file/_libs rm -rf src/nameserv/pmi/.libs src/nameserv/pmi/_libs rm -rf src/pm/gforker/.libs src/pm/gforker/_libs rm -rf src/pm/remshell/.libs src/pm/remshell/_libs rm -rf src/pm/util/.libs src/pm/util/_libs rm -rf src/pmi/pmi2/simple/.libs src/pmi/pmi2/simple/_libs rm -rf src/pmi/simple/.libs src/pmi/simple/_libs rm -rf src/util/assert/.libs src/util/assert/_libs rm -rf src/util/cvar/.libs src/util/cvar/_libs rm -rf src/util/logging/rlog/.libs src/util/logging/rlog/_libs rm -rf src/util/mem/.libs src/util/mem/_libs rm -rf src/util/procmap/.libs src/util/procmap/_libs ( cd test && /usr/bin/make clean ) make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test' Making clean in mpi make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi' Making clean in util make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/util' rm -f *.o make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/util' Making clean in attr make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/attr' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "attrt attrend attrend2 attric attrerr attrerrcomm attrerrtype attrdeleteget attr2type attrorder attrordercomm attrordertype baseattr2 baseattrcomm fkeyval fkeyvalcomm keyval_double_free keyval_double_free_comm keyval_double_free_type keyval_double_free_win fkeyvaltype__BASIC__L23 fkeyvaltype__STRUCT__L34" || rm -f attrt attrend attrend2 attric attrerr attrerrcomm attrerrtype attrdeleteget attr2type attrorder attrordercomm attrordertype baseattr2 baseattrcomm fkeyval fkeyvalcomm keyval_double_free keyval_double_free_comm keyval_double_free_type keyval_double_free_win fkeyvaltype__BASIC__L23 fkeyvaltype__STRUCT__L34 rm -f *.o make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/attr' Making clean in basic make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/basic' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "self simple sendrecv srtest wtime netpipe patterns adapt" || rm -f self simple sendrecv srtest wtime netpipe patterns adapt rm -f *.o make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/basic' Making clean in datatype make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/datatype' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "blockindexed_misc blockindexed_zero_count concurrent_irecv contents contig_zero_count contigstruct cxx_types dataalign darray_pack darray_cyclic gaddress get_elements get_elements_pairtype getpartelm hindexed_zeros hindexed_block hindexed_block_contents hvecblklen indexed_misc large_count large_type large_type_sendrec large_vec lbub localpack longdouble lots_of_types pairtype_pack pairtype_size_extent sendrecvt2 sendrecvt4 simple_commit simple_pack simple_pack_external simple_pack_external2 simple_resized simple_size_extent sizedtypes slice_pack slice_pack_external struct_derived_zeros struct_empty_el struct_ezhov struct_no_real_types struct_pack structpack2 struct_verydeep struct_zero_count subarray subarray_pack tfree tmatchsize transpose_pack tresized tresized2 triangular_pack typecommit typefree typelb typename unpack unusual_noncontigs vecblklen zeroblks zeroparms" || rm -f blockindexed_misc blockindexed_zero_count concurrent_irecv contents contig_zero_count contigstruct cxx_types dataalign darray_pack darray_cyclic gaddress get_elements get_elements_pairtype getpartelm hindexed_zeros hindexed_block hindexed_block_contents hvecblklen indexed_misc large_count large_type large_type_sendrec large_vec lbub localpack longdouble lots_of_types pairtype_pack pairtype_size_extent sendrecvt2 sendrecvt4 simple_commit simple_pack simple_pack_external simple_pack_external2 simple_resized simple_size_extent sizedtypes slice_pack slice_pack_external struct_derived_zeros struct_empty_el struct_ezhov struct_no_real_types struct_pack structpack2 struct_verydeep struct_zero_count subarray subarray_pack tfree tmatchsize transpose_pack tresized tresized2 triangular_pack typecommit typefree typelb typename unpack unusual_noncontigs vecblklen zeroblks zeroparms rm -f *.o make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/datatype' Making clean in coll make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/coll' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "allgather2 allgather3 allgatherv2 allgatherv3 allgatherv4 allgather_struct allred allred2 allred3 allred4 allred5 allred6 allredmany alltoall1 alltoallv alltoallv0 alltoallw1 alltoallw2 alltoallw_zeros bcasttest bcastzerotype coll2 coll3 coll4 coll5 coll6 coll7 coll8 coll9 coll10 coll11 coll12 coll13 exscan exscan2 gather gather2 gather_big iallred ibarrier icallgather icallgatherv icallreduce icalltoall icalltoallv icalltoallw icbarrier icbcast icgather icgatherv icreduce icscatter icscatterv longuser nonblocking nonblocking2 nonblocking3 op_commutative opband opbor opbxor opland oplor oplxor opmax opmaxloc opmin opminloc opprod opsum red3 red4 red_scat_block red_scat_block2 redscat redscat2 redscat3 redscatblk3 redscatinter redscatbkinter reduce reduce_local scantst scatter2 scatter3 scattern scatterv uoplong nballtoall1 nbredscat nbredscat3 nbredscatinter nbcoll2 nbicbarrier nbicallgather nbicallgatherv nbicallreduce nbicbcast nbicalltoall nbicalltoallw nbicalltoallv nbicgather nbicgatherv nbicreduce nbicscatter nbicscatterv neighb_coll bcast__BASIC__L24 bcast__BASIC__L25 bcast__STRUCT__L35" || rm -f allgather2 allgather3 allgatherv2 allgatherv3 allgatherv4 allgather_struct allred allred2 allred3 allred4 allred5 allred6 allredmany alltoall1 alltoallv alltoallv0 alltoallw1 alltoallw2 alltoallw_zeros bcasttest bcastzerotype coll2 coll3 coll4 coll5 coll6 coll7 coll8 coll9 coll10 coll11 coll12 coll13 exscan exscan2 gather gather2 gather_big iallred ibarrier icallgather icallgatherv icallreduce icalltoall icalltoallv icalltoallw icbarrier icbcast icgather icgatherv icreduce icscatter icscatterv longuser nonblocking nonblocking2 nonblocking3 op_commutative opband opbor opbxor opland oplor oplxor opmax opmaxloc opmin opminloc opprod opsum red3 red4 red_scat_block red_scat_block2 redscat redscat2 redscat3 redscatblk3 redscatinter redscatbkinter reduce reduce_local scantst scatter2 scatter3 scattern scatterv uoplong nballtoall1 nbredscat nbredscat3 nbredscatinter nbcoll2 nbicbarrier nbicallgather nbicallgatherv nbicallreduce nbicbcast nbicalltoall nbicalltoallw nbicalltoallv nbicgather nbicgatherv nbicreduce nbicscatter nbicscatterv neighb_coll bcast__BASIC__L24 bcast__BASIC__L25 bcast__STRUCT__L35 rm -f *.o make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/coll' Making clean in comm make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/comm' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "commcreate1 dup dupic dup_with_info ic1 ic2 commname ctxalloc ctxsplit icgroup icsplit iccreate cmfree icm cmsplit cmsplit2 cmsplit_type comm_create_group comm_group_half comm_group_rand probe_intercomm comm_idup comm_idup_mul comm_idup_overlap comm_idup_isend comm_idup_nb comm_idup_iallreduce comm_idup_comm comm_idup_comm2 comm_create_group_idup comm_info" || rm -f commcreate1 dup dupic dup_with_info ic1 ic2 commname ctxalloc ctxsplit icgroup icsplit iccreate cmfree icm cmsplit cmsplit2 cmsplit_type comm_create_group comm_group_half comm_group_rand probe_intercomm comm_idup comm_idup_mul comm_idup_overlap comm_idup_isend comm_idup_nb comm_idup_iallreduce comm_idup_comm comm_idup_comm2 comm_create_group_idup comm_info rm -f *.o make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/comm' Making clean in errhan make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errhan' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "adderr commcall errfatal predef_eh errstring2 dynamic_errcode_predefined_errclass" || rm -f adderr commcall errfatal predef_eh errstring2 dynamic_errcode_predefined_errclass rm -f *.o make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errhan' Making clean in group make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/group' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "grouptest grouptest2 groupcreate gtranks groupnullincl gtranksperf" || rm -f grouptest grouptest2 groupcreate gtranks groupnullincl gtranksperf rm -f *.o make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/group' Making clean in info make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/info' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "infodup infodel infovallen infoorder infomany infomany2 infotest infoget infoenv" || rm -f infodup infodel infovallen infoorder infomany infomany2 infotest infoget infoenv rm -f *.o make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/info' Making clean in init make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/init' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "attrself exitst1 exitst2 exitst3 initstat version library_version timeout finalized" || rm -f attrself exitst1 exitst2 exitst3 initstat version library_version timeout finalized rm -f *.o make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/init' Making clean in pt2pt make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/pt2pt' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "anyall bottom bsend1 bsend2 bsend3 bsend4 bsend5 bsendalign cancelrecv cancelanysrc isendself issendselfcancel isendirecv eagerdt isendselfprobe bsendfrag bsendpending icsend rqstatus rqfreeb greq1 scancel scancel2 rcancel pscancel scancel_unmatch sendflood sendrecv2 sendrecv3 waitany_null probe_unexp probenull inactivereq waittestnull sendall large_message mprobe big_count_status many_isend manylmt huge_underflow huge_anysrc huge_dupcomm dtype_send recv_any irecv_any large_tag pingping__BASIC__L28 sendrecv1__BASIC__L29 sendself__BASIC__L30 sendrecv1__STRUCT__L38 sendself__STRUCT__L39 pingping__STRUCT__L40" || rm -f anyall bottom bsend1 bsend2 bsend3 bsend4 bsend5 bsendalign cancelrecv cancelanysrc isendself issendselfcancel isendirecv eagerdt isendselfprobe bsendfrag bsendpending icsend rqstatus rqfreeb greq1 scancel scancel2 rcancel pscancel scancel_unmatch sendflood sendrecv2 sendrecv3 waitany_null probe_unexp probenull inactivereq waittestnull sendall large_message mprobe big_count_status many_isend manylmt huge_underflow huge_anysrc huge_dupcomm dtype_send recv_any irecv_any large_tag pingping__BASIC__L28 sendrecv1__BASIC__L29 sendself__BASIC__L30 sendrecv1__STRUCT__L38 sendself__STRUCT__L39 pingping__STRUCT__L40 rm -f *.o make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/pt2pt' Making clean in rma make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/rma' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "allocmem test1 test2 test2_shm test3 test3_shm test4 test5 lockcontention lockcontention2 lockcontention3 lockopts contention_put contention_putget put_base put_bottom locknull wintest wintest_shm transpose1 transpose2 transpose3 transpose3_shm transpose4 transpose5 transpose6 transpose7 fetchandadd fetchandadd_tree winname putfidx accfence2 adlb_mimic1 getgroup contig_displ test1_am test2_am test2_am_shm test3_am test3_am_shm test4_am test5_am fetchandadd_am fetchandadd_tree_am accfence2_am test1_dt attrorderwin wincall fkeyvalwin baseattrwin nullpscw nullpscw_shm rmanull rmazero mixedsync manyrma2 manyrma2_shm manyrma3 selfrma strided_acc_onelock strided_putget_indexed strided_putget_indexed_shared strided_acc_indexed strided_acc_subarray strided_get_indexed strided_getacc_indexed strided_getacc_indexed_shared window_creation win_flavors win_shared win_shared_noncontig win_shared_noncontig_put win_shared_zerobyte win_shared_create_allocshm win_shared_create_no_allocshm win_zero win_large_shm win_dynamic_acc get_acc_local compare_and_swap linked_list linked_list_fop linked_list_lockall linked_list_bench_lock_all linked_list_bench_lock_excl linked_list_bench_lock_shr linked_list_bench_lock_shr_nocheck fetch_and_op_char fetch_and_op_short fetch_and_op_int fetch_and_op_long fetch_and_op_double fetch_and_op_long_double fetch_and_op_char_hwacc fetch_and_op_short_hwacc fetch_and_op_int_hwacc fetch_and_op_long_hwacc fetch_and_op_double_hwacc fetch_and_op_long_double_hwacc fetch_and_op_char_accop_hwacc fetch_and_op_short_accop_hwacc fetch_and_op_int_accop_hwacc fetch_and_op_long_accop_hwacc fetch_and_op_double_accop_hwacc fetch_and_op_long_double_accop_hwacc get_accumulate_short get_accumulate_long get_accumulate_double get_accumulate_int get_accumulate_short_derived get_accumulate_long_derived get_accumulate_double_derived get_accumulate_int_derived flush win_shared_put_flush_get reqops req_example req_example_shm win_info pscw_ordering pscw_ordering_shm mutex_bench mutex_bench_shared mutex_bench_shm mutex_bench_shm_ordered rma_contig badrma nb_test acc_loc acc_ordering fence_shm get_struct rput_local_comp racc_local_comp at_complete atomic_rmw_fop atomic_rmw_cas atomic_rmw_gacc atomic_get_short_int atomic_get_2int atomic_get_long_int atomic_get_float_int atomic_get_double_int atomic_get_long_double_int acc_pairtype manyget derived_acc_flush_local large_acc_flush_local large_small_acc put_flush_get acc_flush_get gacc_flush_get fop_flush_get cas_flush_get win_shared_put_flush_load win_shared_acc_flush_load win_shared_gacc_flush_load win_shared_fop_flush_load win_shared_cas_flush_load overlap_wins_put overlap_wins_acc overlap_wins_gacc overlap_wins_fop overlap_wins_cas rget_unlock lock_nested rget_testall win_shared_query_null aint accfence1__BASIC__L31 accpscw1__BASIC__L32 epochtest__BASIC__L33 getfence1__BASIC__L34 getfence1__BASIC__L35 lock_contention_dt__BASIC__L36 lock_dt__BASIC__L37 lock_dt_flush__BASIC__L38 lock_dt_flushlocal__BASIC__L39 lockall_dt__BASIC__L40 lockall_dt_flush__BASIC__L41 lockall_dt_flushall__BASIC__L42 lockall_dt_flushlocal__BASIC__L43 lockall_dt_flushlocalall__BASIC__L44 putfence1__BASIC__L45 putfence1__BASIC__L46 putpscw1__BASIC__L47 accfence1__STRUCT__L41 accpscw1__STRUCT__L42 epochtest__STRUCT__L43 getfence1__STRUCT__L44 lock_contention_dt__STRUCT__L45 lock_dt__STRUCT__L46 lock_dt_flush__STRUCT__L47 lock_dt_flushlocal__STRUCT__L48 lockall_dt__STRUCT__L49 lockall_dt_flush__STRUCT__L50 lockall_dt_flushall__STRUCT__L51 lockall_dt_flushlocal__STRUCT__L52 lockall_dt_flushlocalall__STRUCT__L53 putfence1__STRUCT__L54 putpscw1__STRUCT__L55" || rm -f allocmem test1 test2 test2_shm test3 test3_shm test4 test5 lockcontention lockcontention2 lockcontention3 lockopts contention_put contention_putget put_base put_bottom locknull wintest wintest_shm transpose1 transpose2 transpose3 transpose3_shm transpose4 transpose5 transpose6 transpose7 fetchandadd fetchandadd_tree winname putfidx accfence2 adlb_mimic1 getgroup contig_displ test1_am test2_am test2_am_shm test3_am test3_am_shm test4_am test5_am fetchandadd_am fetchandadd_tree_am accfence2_am test1_dt attrorderwin wincall fkeyvalwin baseattrwin nullpscw nullpscw_shm rmanull rmazero mixedsync manyrma2 manyrma2_shm manyrma3 selfrma strided_acc_onelock strided_putget_indexed strided_putget_indexed_shared strided_acc_indexed strided_acc_subarray strided_get_indexed strided_getacc_indexed strided_getacc_indexed_shared window_creation win_flavors win_shared win_shared_noncontig win_shared_noncontig_put win_shared_zerobyte win_shared_create_allocshm win_shared_create_no_allocshm win_zero win_large_shm win_dynamic_acc get_acc_local compare_and_swap linked_list linked_list_fop linked_list_lockall linked_list_bench_lock_all linked_list_bench_lock_excl linked_list_bench_lock_shr linked_list_bench_lock_shr_nocheck fetch_and_op_char fetch_and_op_short fetch_and_op_int fetch_and_op_long fetch_and_op_double fetch_and_op_long_double fetch_and_op_char_hwacc fetch_and_op_short_hwacc fetch_and_op_int_hwacc fetch_and_op_long_hwacc fetch_and_op_double_hwacc fetch_and_op_long_double_hwacc fetch_and_op_char_accop_hwacc fetch_and_op_short_accop_hwacc fetch_and_op_int_accop_hwacc fetch_and_op_long_accop_hwacc fetch_and_op_double_accop_hwacc fetch_and_op_long_double_accop_hwacc get_accumulate_short get_accumulate_long get_accumulate_double get_accumulate_int get_accumulate_short_derived get_accumulate_long_derived get_accumulate_double_derived get_accumulate_int_derived flush win_shared_put_flush_get reqops req_example req_example_shm win_info pscw_ordering pscw_ordering_shm mutex_bench mutex_bench_shared mutex_bench_shm mutex_bench_shm_ordered rma_contig badrma nb_test acc_loc acc_ordering fence_shm get_struct rput_local_comp racc_local_comp at_complete atomic_rmw_fop atomic_rmw_cas atomic_rmw_gacc atomic_get_short_int atomic_get_2int atomic_get_long_int atomic_get_float_int atomic_get_double_int atomic_get_long_double_int acc_pairtype manyget derived_acc_flush_local large_acc_flush_local large_small_acc put_flush_get acc_flush_get gacc_flush_get fop_flush_get cas_flush_get win_shared_put_flush_load win_shared_acc_flush_load win_shared_gacc_flush_load win_shared_fop_flush_load win_shared_cas_flush_load overlap_wins_put overlap_wins_acc overlap_wins_gacc overlap_wins_fop overlap_wins_cas rget_unlock lock_nested rget_testall win_shared_query_null aint accfence1__BASIC__L31 accpscw1__BASIC__L32 epochtest__BASIC__L33 getfence1__BASIC__L34 getfence1__BASIC__L35 lock_contention_dt__BASIC__L36 lock_dt__BASIC__L37 lock_dt_flush__BASIC__L38 lock_dt_flushlocal__BASIC__L39 lockall_dt__BASIC__L40 lockall_dt_flush__BASIC__L41 lockall_dt_flushall__BASIC__L42 lockall_dt_flushlocal__BASIC__L43 lockall_dt_flushlocalall__BASIC__L44 putfence1__BASIC__L45 putfence1__BASIC__L46 putpscw1__BASIC__L47 accfence1__STRUCT__L41 accpscw1__STRUCT__L42 epochtest__STRUCT__L43 getfence1__STRUCT__L44 lock_contention_dt__STRUCT__L45 lock_dt__STRUCT__L46 lock_dt_flush__STRUCT__L47 lock_dt_flushlocal__STRUCT__L48 lockall_dt__STRUCT__L49 lockall_dt_flush__STRUCT__L50 lockall_dt_flushall__STRUCT__L51 lockall_dt_flushlocal__STRUCT__L52 lockall_dt_flushlocalall__STRUCT__L53 putfence1__STRUCT__L54 putpscw1__STRUCT__L55 rm -f *.o make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/rma' Making clean in topo make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/topo' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "cartmap1 cartzero cartshift1 cartsuball cartcreates dims1 dims2 dims3 dims4 dims5 graphmap1 topotest topodup graphcr graphcr2 distgraph1 dgraph_unwgt" || rm -f cartmap1 cartzero cartshift1 cartsuball cartcreates dims1 dims2 dims3 dims4 dims5 graphmap1 topotest topodup graphcr graphcr2 distgraph1 dgraph_unwgt rm -f *.o make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/topo' Making clean in errors make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors' Making clean in attr make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/attr' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "keyvalmis" || rm -f keyvalmis rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/attr' Making clean in coll make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/coll' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "noalias noalias2 noalias3 rerr bcastlength reduce_local nb_noalias nb_rerr ibcastlength" || rm -f noalias noalias2 noalias3 rerr bcastlength reduce_local nb_noalias nb_rerr ibcastlength rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/coll' Making clean in comm make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/comm' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "cfree ccreate1 manysplit userdup too_many_comms too_many_comms2 too_many_comms3 too_many_icomms too_many_icomms2 comm_create_nullarg comm_create_group_nullarg comm_get_info_nullarg comm_group_nullarg comm_size_nullarg comm_split_nullarg comm_split_type_nullarg intercomm_create_nullarg subcomm_abort subcomm_abort2 intercomm_abort" || rm -f cfree ccreate1 manysplit userdup too_many_comms too_many_comms2 too_many_comms3 too_many_icomms too_many_icomms2 comm_create_nullarg comm_create_group_nullarg comm_get_info_nullarg comm_group_nullarg comm_size_nullarg comm_split_nullarg comm_split_type_nullarg intercomm_create_nullarg subcomm_abort subcomm_abort2 intercomm_abort rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/comm' Making clean in datatype make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/datatype' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "getcnterr type_contiguous_nullarg type_extent_nullarg type_get_extent_nullarg type_get_true_extent_nullarg type_get_true_extent_x_nullarg type_lb_nullarg type_ub_nullarg type_size_x_nullarg type_vector_nullarg" || rm -f getcnterr type_contiguous_nullarg type_extent_nullarg type_get_extent_nullarg type_get_true_extent_nullarg type_get_true_extent_x_nullarg type_lb_nullarg type_ub_nullarg type_size_x_nullarg type_vector_nullarg rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/datatype' Making clean in group make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/group' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "gerr group_difference_nullarg group_intersection_nullarg group_range_excl_nullarg group_range_incl_nullarg group_rank_nullarg group_size_nullarg group_translate_ranks_nullarg group_union_nullarg" || rm -f gerr group_difference_nullarg group_intersection_nullarg group_range_excl_nullarg group_range_incl_nullarg group_rank_nullarg group_size_nullarg group_translate_ranks_nullarg group_union_nullarg rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/group' Making clean in pt2pt make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/pt2pt' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "proberank truncmsg1 truncmsg2 errinstatts errinstatta errinstatws errinstatwa" || rm -f proberank truncmsg1 truncmsg2 errinstatts errinstatta errinstatws errinstatwa rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/pt2pt' Making clean in rma make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/rma' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "winerr winerr2 cas_type_check win_sync_unlock win_sync_free_pt win_sync_free_at win_sync_complete win_sync_lock_at win_sync_lock_pt win_sync_lock_fence win_sync_nested win_sync_op" || rm -f winerr winerr2 cas_type_check win_sync_unlock win_sync_free_pt win_sync_free_at win_sync_complete win_sync_lock_at win_sync_lock_pt win_sync_lock_fence win_sync_nested win_sync_op rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/rma' Making clean in topo make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/topo' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "cartsmall" || rm -f cartsmall rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/topo' Making clean in basic make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/basic' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "lefthandles debabort" || rm -f lefthandles debabort rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/basic' Making clean in faults make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/faults' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "pt2ptf1 pt2ptf2 collf1 collf2" || rm -f pt2ptf1 pt2ptf2 collf1 collf2 rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/faults' Making clean in io make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/io' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "fileerrret openerr file_errhdl" || rm -f fileerrret openerr file_errhdl rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/io' Making clean in f77 make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/f77' Making clean in io make[6]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/f77/io' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "uerrhandf" || rm -f uerrhandf rm -f *.o make[6]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/f77/io' make[6]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/f77' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap make[6]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/f77' make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/f77' Making clean in f90 make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/f90' Making clean in io make[6]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/f90/io' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "uerrhandf90" || rm -f uerrhandf90 rm -f *.o make[6]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/f90/io' make[6]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/f90' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap make[6]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/f90' make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/f90' Making clean in cxx make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/cxx' Making clean in io make[6]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/cxx/io' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "fileerrretx errgetfilex throwtestfilex" || rm -f fileerrretx errgetfilex throwtestfilex rm -f *.o make[6]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/cxx/io' Making clean in errhan make[6]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/cxx/errhan' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "commerrx errgetx errsetx throwtest" || rm -f commerrx errgetx errsetx throwtest rm -f *.o make[6]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/cxx/errhan' make[6]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/cxx' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml make[6]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/cxx' make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/cxx' Making clean in spawn make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/spawn' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "badport unpub lookup_name connect_timeout_no_accept connect_timeout_mismatch" || rm -f badport unpub lookup_name connect_timeout_no_accept connect_timeout_mismatch rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/spawn' make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors' make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors' Making clean in manual make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/manual' Making clean in mpi_t make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/manual/mpi_t' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "mpit_test mpit_test2 nem_fbox_fallback_to_queue_count unexpected_recvq_buffer_size" || rm -f mpit_test mpit_test2 nem_fbox_fallback_to_queue_count unexpected_recvq_buffer_size rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/manual/mpi_t' make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/manual' test -z "summary.xml summary.tap summary.junit.xml test-port" || rm -f summary.xml summary.tap summary.junit.xml test-port test -z "singjoin testconnect testconnectserial dimsbalanced spawntest_master spawntest_child segfault" || rm -f singjoin testconnect testconnectserial dimsbalanced spawntest_master spawntest_child segfault rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/manual' make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/manual' Making clean in perf make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/perf' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "transp_datatype non_zero_root sendrecvl twovec dtpack allredtrace commcreatep allredtrace commcreatep timer manyrma nestvec nestvec2 indexperf" || rm -f transp_datatype non_zero_root sendrecvl twovec dtpack allredtrace commcreatep allredtrace commcreatep timer manyrma nestvec nestvec2 indexperf rm -f *.o make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/perf' Making clean in mpi_t make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/mpi_t' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "mpi_t_str mpit_vars cvarwrite getindex" || rm -f mpi_t_str mpit_vars cvarwrite getindex rm -f *.o make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/mpi_t' Making clean in impls make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/impls' Making clean in mpich make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/impls/mpich' Making clean in mpi_t make[6]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/impls/mpich/mpi_t' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "collparmt" || rm -f collparmt rm -f *.o make[6]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/impls/mpich/mpi_t' make[6]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/impls/mpich' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml make[6]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/impls/mpich' make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/impls/mpich' make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/impls' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/impls' make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/impls' Making clean in ckpoint make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/ckpoint' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "write_ckpoint" || rm -f write_ckpoint rm -f *.o make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/ckpoint' Making clean in ft make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/ft' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "die abort sendalive isendalive senddead recvdead isenddead irecvdead barrier gather reduce bcast scatter failure_ack anysource revoke_nofail shrink agree multi_isendalive agree_shrink revoke_shrink nbccoll" || rm -f die abort sendalive isendalive senddead recvdead isenddead irecvdead barrier gather reduce bcast scatter failure_ack anysource revoke_nofail shrink agree multi_isendalive agree_shrink revoke_shrink nbccoll rm -f *.o make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/ft' Making clean in dtpools make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/dtpools' Making clean in src make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/dtpools/src' rm -rf .libs _libs test -z "libdtpools.la" || rm -f libdtpools.la rm -f ./so_locations rm -f *.o rm -f *.lo make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/dtpools/src' Making clean in include make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/dtpools/include' rm -rf .libs _libs rm -f *.lo make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/dtpools/include' make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/dtpools' rm -rf .libs _libs rm -f *.lo make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/dtpools' make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/dtpools' Making clean in io make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/io' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml rm -f testfile testfile.* test -z "rdwrord rdwrzero getextent setinfo setviewcur i_noncontig async async_any userioerr resized resized2 bigtype hindexed_io simple_collective external32_derived_dtype tst_fileview i_bigtype i_hindexed_io i_rdwrord i_setviewcur i_aggregation1 i_aggregation2 i_coll_test i_darray_read i_hindexed i_noncontig_coll i_noncontig_coll2 i_types_with_zeros" || rm -f rdwrord rdwrzero getextent setinfo setviewcur i_noncontig async async_any userioerr resized resized2 bigtype hindexed_io simple_collective external32_derived_dtype tst_fileview i_bigtype i_hindexed_io i_rdwrord i_setviewcur i_aggregation1 i_aggregation2 i_coll_test i_darray_read i_hindexed i_noncontig_coll i_noncontig_coll2 i_types_with_zeros rm -f *.o make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/io' Making clean in f77 make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77' Making clean in util make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77/util' rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77/util' Making clean in attr make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77/attr' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "attrmpi1f baseattrf baseattr2f commattrf commattr2f commattr3f commattr4f typeattrf typeattr2f typeattr3f" || rm -f attrmpi1f baseattrf baseattr2f commattrf commattr2f commattr3f commattr4f typeattrf typeattr2f typeattr3f rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77/attr' Making clean in datatype make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77/datatype' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "typenamef typesnamef typecntsf typesubf typem2f gaddressf packef allctypesf hindex1f hindexed_blockf typename3f bottom" || rm -f typenamef typesnamef typecntsf typesubf typem2f gaddressf packef allctypesf hindex1f hindexed_blockf typename3f bottom rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77/datatype' Making clean in coll make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77/coll' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "uallreducef exscanf alltoallwf inplacef allredint8f allredopttf reducelocalf alltoallvf redscatf split_typef nonblockingf vw_inplacef red_scat_blockf nonblocking_inpf" || rm -f uallreducef exscanf alltoallwf inplacef allredint8f allredopttf reducelocalf alltoallvf redscatf split_typef nonblockingf vw_inplacef red_scat_blockf nonblocking_inpf rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77/coll' Making clean in pt2pt make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77/pt2pt' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "sendf ssendf rsendf isendf irsendf issendf psendf prsendf pssendf sendrecvf sendrecvreplf statusesf greqf mprobef" || rm -f sendf ssendf rsendf isendf irsendf issendf psendf prsendf pssendf sendrecvf sendrecvreplf statusesf greqf mprobef rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77/pt2pt' Making clean in info make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77/info' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "infotestf infotest2f" || rm -f infotestf infotest2f rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77/info' Making clean in init make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77/init' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "baseenvf" || rm -f baseenvf rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77/init' Making clean in comm make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77/comm' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "commnamef commerrf" || rm -f commnamef commerrf rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77/comm' Making clean in topo make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77/topo' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "cartcrf dgraph_wgtf dgraph_unwgtf" || rm -f cartcrf dgraph_wgtf dgraph_unwgtf rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77/topo' Making clean in ext make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77/ext' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "c2f2cf ctypesinf c2fmult" || rm -f c2f2cf ctypesinf c2fmult rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77/ext' Making clean in profile make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77/profile' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "profile1f" || rm -f profile1f rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77/profile' Making clean in spawn make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77/spawn' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "namepubf spawnf spawnargvf spawnmultf spawnmult2f connaccf" || rm -f namepubf spawnf spawnargvf spawnmultf spawnmult2f connaccf rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77/spawn' Making clean in io make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77/io' test -z "summary.xml summary.tap gen-src-tmp gen-src-stamp" || rm -f summary.xml summary.tap gen-src-tmp gen-src-stamp rm -f .iotest.txt.* test -z "iwriteatf iwritef iwriteshf writef writeatf writeallf writeallbef writeordf writeordbef writeshf writeatallf writeatallbef fileerrf fileinfof shpositionf atomicityf miscfilef setviewcurf c2fmultio c2f2ciof i_setviewcurf iwriteatallf" || rm -f iwriteatf iwritef iwriteshf writef writeatf writeallf writeallbef writeordf writeordbef writeshf writeatallf writeatallbef fileerrf fileinfof shpositionf atomicityf miscfilef setviewcurf c2fmultio c2f2ciof i_setviewcurf iwriteatallf rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77/io' Making clean in rma make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77/rma' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "winscale1f winscale2f winfencef wingetf winerrf winnamef wingroupf winaccf winaccf c2f2cwinf baseattrwinf winattrf winattr2f aintf" || rm -f winscale1f winscale2f winfencef wingetf winerrf winnamef wingroupf winaccf winaccf c2f2cwinf baseattrwinf winattrf winattr2f aintf rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77/rma' make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77' make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77' Making clean in f90 make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90' Making clean in util make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/util' rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/util' Making clean in timer make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/timer' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "wtimef90" || rm -f wtimef90 rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/timer' Making clean in attr make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/attr' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap if [ "mod" != "" ] ; then rm -f *.mod ; fi test -z "attrmpi1f90 baseattrf90 baseattr2f90 commattrf90 commattr2f90 commattr3f90 commattr4f90 typeattrf90 typeattr2f90 typeattr3f90 fandcattrf90 baseattr3f90 attrlangf90" || rm -f attrmpi1f90 baseattrf90 baseattr2f90 commattrf90 commattr2f90 commattr3f90 commattr4f90 typeattrf90 typeattr2f90 typeattr3f90 fandcattrf90 baseattr3f90 attrlangf90 rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/attr' Making clean in coll make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/coll' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "uallreducef90 exscanf90 alltoallwf90 inplacef90 allredint8f90 allredopttf90 reducelocalf90 alltoallvf90 redscatf90 split_typef90 nonblockingf90 vw_inplacef90 red_scat_blockf90 nonblocking_inpf90" || rm -f uallreducef90 exscanf90 alltoallwf90 inplacef90 allredint8f90 allredopttf90 reducelocalf90 alltoallvf90 redscatf90 split_typef90 nonblockingf90 vw_inplacef90 red_scat_blockf90 nonblocking_inpf90 rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/coll' Making clean in datatype make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/datatype' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "typenamef90 typesnamef90 typecntsf90 typesubf90 typem2f90 gaddressf90 packef90 allctypesf90 hindex1f90 hindexed_blockf90 typename3f90 bottom structf indtype createf90 sizeof kinds trf90 get_elem_d get_elem_u" || rm -f typenamef90 typesnamef90 typecntsf90 typesubf90 typem2f90 gaddressf90 packef90 allctypesf90 hindex1f90 hindexed_blockf90 typename3f90 bottom structf indtype createf90 sizeof kinds trf90 get_elem_d get_elem_u rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/datatype' Making clean in pt2pt make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/pt2pt' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "sendf90 ssendf90 rsendf90 isendf90 irsendf90 issendf90 psendf90 prsendf90 pssendf90 sendrecvf90 sendrecvreplf90 statusesf90 greqf90 mprobef90" || rm -f sendf90 ssendf90 rsendf90 isendf90 irsendf90 issendf90 psendf90 prsendf90 pssendf90 sendrecvf90 sendrecvreplf90 statusesf90 greqf90 mprobef90 rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/pt2pt' Making clean in info make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/info' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "infotestf90 infotest2f90" || rm -f infotestf90 infotest2f90 rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/info' Making clean in comm make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/comm' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "commnamef90 commerrf90" || rm -f commnamef90 commerrf90 rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/comm' Making clean in topo make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/topo' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "cartcrf90 dgraph_wgtf90 dgraph_unwgtf90" || rm -f cartcrf90 dgraph_wgtf90 dgraph_unwgtf90 rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/topo' Making clean in ext make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/ext' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "c2f2cf90 ctypesinf90 c2f90mult" || rm -f c2f2cf90 ctypesinf90 c2f90mult rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/ext' Making clean in init make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/init' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "baseenvf90" || rm -f baseenvf90 rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/init' Making clean in misc make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/misc' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "sizeof2" || rm -f sizeof2 rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/misc' Making clean in f90types make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/f90types' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "createf90types" || rm -f createf90types rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/f90types' Making clean in profile make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/profile' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "profile1f90" || rm -f profile1f90 rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/profile' Making clean in rma make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/rma' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "winscale1f90 winscale2f90 winfencef90 wingetf90 winerrf90 winnamef90 wingroupf90 winaccf90 winaccf90 c2f2cwinf90 baseattrwinf90 winattrf90 winattr2f90 aintf90" || rm -f winscale1f90 winscale2f90 winfencef90 wingetf90 winerrf90 winnamef90 wingroupf90 winaccf90 winaccf90 c2f2cwinf90 baseattrwinf90 winattrf90 winattr2f90 aintf90 rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/rma' Making clean in spawn make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/spawn' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "namepubf90 spawnf90 spawnargvf90 spawnmultf90 spawnmult2f90 connaccf90 spawnargvf03 spawnmultf03" || rm -f namepubf90 spawnf90 spawnargvf90 spawnmultf90 spawnmult2f90 connaccf90 spawnargvf03 spawnmultf03 rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/spawn' Making clean in io make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/io' test -z "summary.xml summary.tap gen-src-tmp gen-src-stamp" || rm -f summary.xml summary.tap gen-src-tmp gen-src-stamp rm -f .iotest.txt.* test -z "iwriteatf90 iwritef90 iwriteshf90 writef90 writeatf90 writeallf90 writeallbef90 writeordf90 writeordbef90 writeshf90 writeatallf90 writeatallbef90 fileerrf90 fileinfof90 shpositionf90 atomicityf90 miscfilef90 setviewcurf90 c2f90multio c2f2ciof90 i_setviewcurf90 iwriteatallf90" || rm -f iwriteatf90 iwritef90 iwriteshf90 writef90 writeatf90 writeallf90 writeallbef90 writeordf90 writeordbef90 writeshf90 writeatallf90 writeatallbef90 fileerrf90 fileinfof90 shpositionf90 atomicityf90 miscfilef90 setviewcurf90 c2f90multio c2f2ciof90 i_setviewcurf90 iwriteatallf90 rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/io' make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90' make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90' Making clean in cxx make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/cxx' Making clean in util make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/util' rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/util' Making clean in attr make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/attr' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "attrtx attricx baseattrcommx fkeyvalcommx fkeyvaltypex__BASIC__L26" || rm -f attrtx attricx baseattrcommx fkeyvalcommx fkeyvaltypex__BASIC__L26 rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/attr' Making clean in pt2pt make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/pt2pt' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "bsend1cxx sendrecvx" || rm -f bsend1cxx sendrecvx rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/pt2pt' Making clean in init make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/init' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "baseenv initstatx initstat2x" || rm -f baseenv initstatx initstat2x rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/init' Making clean in info make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/info' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "infodupx infodelx infovallenx infoorderx" || rm -f infodupx infodelx infovallenx infoorderx rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/info' Making clean in comm make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/comm' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "commname2" || rm -f commname2 rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/comm' Making clean in coll make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/coll' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "arcomplex uallredx uallreduce ureduce ureducelocal uscan uexscan icbcastx icbarrierx icgatherx icgathervx icscatterx icscattervx icallgatherx icallgathervx icallreducex icreducex icalltoallx alltoallw2x reduceboolx redscatblk" || rm -f arcomplex uallredx uallreduce ureduce ureducelocal uscan uexscan icbcastx icbarrierx icgatherx icgathervx icscatterx icscattervx icallgatherx icallgathervx icallreducex icreducex icalltoallx alltoallw2x reduceboolx redscatblk rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/coll' Making clean in datatype make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/datatype' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "typecntsx typenamex typemiscx packsizex__BASIC__L27" || rm -f typecntsx typenamex typemiscx packsizex__BASIC__L27 rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/datatype' Making clean in errhan make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/errhan' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "commcallx" || rm -f commcallx rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/errhan' Making clean in topo make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/topo' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/topo' Making clean in io make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/io' test -z "summary.xml summary.tap gen-src-tmp gen-src-stamp" || rm -f summary.xml summary.tap gen-src-tmp gen-src-stamp rm -f .iotest.txt.* test -z "iwriteatx iwritex iwriteshx writex writeatx writeallx writeatallx writeallbex writeordx writeordbex writeshx writeatallbex iwriteatnosx iwritenosx iwriteshnosx writenosx writeatnosx writeallnosx writeatallnosx writeallbenosx writeordnosx writeordbenosx writeshnosx writeatallbenosx fileerrx fileinfox shpositionx setinfox filemiscx seekavail" || rm -f iwriteatx iwritex iwriteshx writex writeatx writeallx writeatallx writeallbex writeordx writeordbex writeshx writeatallbex iwriteatnosx iwritenosx iwriteshnosx writenosx writeatnosx writeallnosx writeatallnosx writeallbenosx writeordnosx writeordbenosx writeshnosx writeatallbenosx fileerrx fileinfox shpositionx setinfox filemiscx seekavail rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/io' Making clean in rma make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/rma' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "winnamex wincallx getgroupx winfencex winscale1x winscale2x fkeyvalwinx" || rm -f winnamex wincallx getgroupx winfencex winscale1x winscale2x fkeyvalwinx rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/rma' Making clean in spawn make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/spawn' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "spawnargvx spawnintrax namepubx selfconaccx" || rm -f spawnargvx spawnintrax namepubx selfconaccx rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/spawn' make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/cxx' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/cxx' make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/cxx' Making clean in threads make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/threads' Making clean in util make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/threads/util' rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/threads/util' Making clean in pt2pt make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/threads/pt2pt' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "threads threaded_sr alltoall sendselfth greq_wait greq_test multisend multisend2 multisend3 multisend4 ibsend" || rm -f threads threaded_sr alltoall sendselfth greq_wait greq_test multisend multisend2 multisend3 multisend4 ibsend rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/threads/pt2pt' Making clean in comm make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/threads/comm' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "ctxdup dup_leak_test comm_dup_deadlock comm_create_threads comm_create_group_threads comm_create_group_threads2 comm_idup idup_deadlock ctxidup idup_nb idup_comm_gen" || rm -f ctxdup dup_leak_test comm_dup_deadlock comm_create_threads comm_create_group_threads comm_create_group_threads2 comm_idup idup_deadlock ctxidup idup_nb idup_comm_gen rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/threads/comm' Making clean in init make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/threads/init' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "initth" || rm -f initth rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/threads/init' Making clean in mpi_t make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/threads/mpi_t' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "mpit_threading" || rm -f mpit_threading rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/threads/mpi_t' Making clean in spawn make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/threads/spawn' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "multispawn th_taskmaster" || rm -f multispawn th_taskmaster rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/threads/spawn' Making clean in rma make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/threads/rma' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "multirma multiget multifence" || rm -f multirma multiget multifence rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/threads/rma' Making clean in coll make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/threads/coll' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "iallred allred" || rm -f iallred allred rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/threads/coll' make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/threads' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/threads' make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/threads' Making clean in spawn make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/spawn' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "namepub spawn1 spawninfo1 spawnminfo1 spawn2 spawnintra spawnargv spawnmanyarg spaconacc spaconacc2 selfconacc spawnmult2 taskmaster join disconnect_reconnect disconnect_reconnect2 disconnect_reconnect3 multiple_ports multiple_ports2 spaiccreate spaiccreate2 disconnect disconnect2 disconnect3 pgroup_connect_test pgroup_intercomm_test concurrent_spawns spawn_rootargs" || rm -f namepub spawn1 spawninfo1 spawnminfo1 spawn2 spawnintra spawnargv spawnmanyarg spaconacc spaconacc2 selfconacc spawnmult2 taskmaster join disconnect_reconnect disconnect_reconnect2 disconnect_reconnect3 multiple_ports multiple_ports2 spaiccreate spaiccreate2 disconnect disconnect2 disconnect3 pgroup_connect_test pgroup_intercomm_test concurrent_spawns spawn_rootargs rm -f *.o make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/spawn' Making clean in ft make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/ft' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "die abort sendalive isendalive senddead recvdead isenddead irecvdead barrier gather reduce bcast scatter failure_ack anysource revoke_nofail shrink agree multi_isendalive agree_shrink revoke_shrink nbccoll" || rm -f die abort sendalive isendalive senddead recvdead isenddead irecvdead barrier gather reduce bcast scatter failure_ack anysource revoke_nofail shrink agree multi_isendalive agree_shrink revoke_shrink nbccoll rm -f *.o make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/ft' Making clean in . make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi' Making clean in commands make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/commands' test -z "err.txt out.log out.txt a.out" || rm -f err.txt out.log out.txt a.out rm -rf .libs _libs rm -f stdiotest stdintest stdintest2 checkenv1 rtest rtestf rtestx testout rm -f *.o rm -f *.lo make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/commands' Making clean in . make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test' rm -rf .libs _libs rm -f *.lo make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test' test -z "" || rm -f test -z " " || rm -f rm -f *.o rm -f src/binding/cxx/*.o rm -f src/binding/cxx/*.lo rm -f src/binding/fortran/mpif_h/*.o rm -f src/binding/fortran/mpif_h/*.lo rm -f src/binding/fortran/use_mpi/*.o rm -f src/binding/fortran/use_mpi/*.lo rm -f src/binding/fortran/use_mpi_f08/*.o rm -f src/binding/fortran/use_mpi_f08/*.lo rm -f src/binding/fortran/use_mpi_f08/wrappers_c/*.o rm -f src/binding/fortran/use_mpi_f08/wrappers_c/*.lo rm -f src/binding/fortran/use_mpi_f08/wrappers_f/*.o rm -f src/binding/fortran/use_mpi_f08/wrappers_f/*.lo rm -f src/binding/fortran/use_mpi_f08/wrappers_f/profiling/*.o rm -f src/binding/fortran/use_mpi_f08/wrappers_f/profiling/*.lo rm -f src/env/*.o rm -f src/glue/romio/*.o rm -f src/glue/romio/*.lo rm -f src/mpi/attr/*.o rm -f src/mpi/attr/*.lo rm -f src/mpi/coll/*.o rm -f src/mpi/coll/*.lo rm -f src/mpi/coll/algorithms/recexchalgo/*.o rm -f src/mpi/coll/algorithms/recexchalgo/*.lo rm -f src/mpi/coll/algorithms/stubalgo/*.o rm -f src/mpi/coll/algorithms/stubalgo/*.lo rm -f src/mpi/coll/algorithms/treealgo/*.o rm -f src/mpi/coll/algorithms/treealgo/*.lo rm -f src/mpi/coll/allgather/*.o rm -f src/mpi/coll/allgather/*.lo rm -f src/mpi/coll/allgatherv/*.o rm -f src/mpi/coll/allgatherv/*.lo rm -f src/mpi/coll/allreduce/*.o rm -f src/mpi/coll/allreduce/*.lo rm -f src/mpi/coll/allreduce_group/*.o rm -f src/mpi/coll/allreduce_group/*.lo rm -f src/mpi/coll/alltoall/*.o rm -f src/mpi/coll/alltoall/*.lo rm -f src/mpi/coll/alltoallv/*.o rm -f src/mpi/coll/alltoallv/*.lo rm -f src/mpi/coll/alltoallw/*.o rm -f src/mpi/coll/alltoallw/*.lo rm -f src/mpi/coll/barrier/*.o rm -f src/mpi/coll/barrier/*.lo rm -f src/mpi/coll/bcast/*.o rm -f src/mpi/coll/bcast/*.lo rm -f src/mpi/coll/exscan/*.o rm -f src/mpi/coll/exscan/*.lo rm -f src/mpi/coll/gather/*.o rm -f src/mpi/coll/gather/*.lo rm -f src/mpi/coll/gatherv/*.o rm -f src/mpi/coll/gatherv/*.lo rm -f src/mpi/coll/iallgather/*.o rm -f src/mpi/coll/iallgather/*.lo rm -f src/mpi/coll/iallgatherv/*.o rm -f src/mpi/coll/iallgatherv/*.lo rm -f src/mpi/coll/iallreduce/*.o rm -f src/mpi/coll/iallreduce/*.lo rm -f src/mpi/coll/ialltoall/*.o rm -f src/mpi/coll/ialltoall/*.lo rm -f src/mpi/coll/ialltoallv/*.o rm -f src/mpi/coll/ialltoallv/*.lo rm -f src/mpi/coll/ialltoallw/*.o rm -f src/mpi/coll/ialltoallw/*.lo rm -f src/mpi/coll/ibarrier/*.o rm -f src/mpi/coll/ibarrier/*.lo rm -f src/mpi/coll/ibcast/*.o rm -f src/mpi/coll/ibcast/*.lo rm -f src/mpi/coll/iexscan/*.o rm -f src/mpi/coll/iexscan/*.lo rm -f src/mpi/coll/igather/*.o rm -f src/mpi/coll/igather/*.lo rm -f src/mpi/coll/igatherv/*.o rm -f src/mpi/coll/igatherv/*.lo rm -f src/mpi/coll/ineighbor_allgather/*.o rm -f src/mpi/coll/ineighbor_allgather/*.lo rm -f src/mpi/coll/ineighbor_allgatherv/*.o rm -f src/mpi/coll/ineighbor_allgatherv/*.lo rm -f src/mpi/coll/ineighbor_alltoall/*.o rm -f src/mpi/coll/ineighbor_alltoall/*.lo rm -f src/mpi/coll/ineighbor_alltoallv/*.o rm -f src/mpi/coll/ineighbor_alltoallv/*.lo rm -f src/mpi/coll/ineighbor_alltoallw/*.o rm -f src/mpi/coll/ineighbor_alltoallw/*.lo rm -f src/mpi/coll/ireduce/*.o rm -f src/mpi/coll/ireduce/*.lo rm -f src/mpi/coll/ireduce_scatter/*.o rm -f src/mpi/coll/ireduce_scatter/*.lo rm -f src/mpi/coll/ireduce_scatter_block/*.o rm -f src/mpi/coll/ireduce_scatter_block/*.lo rm -f src/mpi/coll/iscan/*.o rm -f src/mpi/coll/iscan/*.lo rm -f src/mpi/coll/iscatter/*.o rm -f src/mpi/coll/iscatter/*.lo rm -f src/mpi/coll/iscatterv/*.o rm -f src/mpi/coll/iscatterv/*.lo rm -f src/mpi/coll/neighbor_allgather/*.o rm -f src/mpi/coll/neighbor_allgather/*.lo rm -f src/mpi/coll/neighbor_allgatherv/*.o rm -f src/mpi/coll/neighbor_allgatherv/*.lo rm -f src/mpi/coll/neighbor_alltoall/*.o rm -f src/mpi/coll/neighbor_alltoall/*.lo rm -f src/mpi/coll/neighbor_alltoallv/*.o rm -f src/mpi/coll/neighbor_alltoallv/*.lo rm -f src/mpi/coll/neighbor_alltoallw/*.o rm -f src/mpi/coll/neighbor_alltoallw/*.lo rm -f src/mpi/coll/op/*.o rm -f src/mpi/coll/op/*.lo rm -f src/mpi/coll/reduce/*.o rm -f src/mpi/coll/reduce/*.lo rm -f src/mpi/coll/reduce_local/*.o rm -f src/mpi/coll/reduce_local/*.lo rm -f src/mpi/coll/reduce_scatter/*.o rm -f src/mpi/coll/reduce_scatter/*.lo rm -f src/mpi/coll/reduce_scatter_block/*.o rm -f src/mpi/coll/reduce_scatter_block/*.lo rm -f src/mpi/coll/scan/*.o rm -f src/mpi/coll/scan/*.lo rm -f src/mpi/coll/scatter/*.o rm -f src/mpi/coll/scatter/*.lo rm -f src/mpi/coll/scatterv/*.o rm -f src/mpi/coll/scatterv/*.lo rm -f src/mpi/coll/src/*.o rm -f src/mpi/coll/src/*.lo rm -f src/mpi/coll/transports/gentran/*.o rm -f src/mpi/coll/transports/gentran/*.lo rm -f src/mpi/coll/transports/stubtran/*.o rm -f src/mpi/coll/transports/stubtran/*.lo rm -f src/mpi/comm/*.o rm -f src/mpi/comm/*.lo rm -f src/mpi/datatype/*.o rm -f src/mpi/datatype/*.lo rm -f src/mpi/datatype/dataloop/*.o rm -f src/mpi/datatype/dataloop/*.lo rm -f src/mpi/debugger/*.o rm -f src/mpi/debugger/*.lo rm -f src/mpi/errhan/*.o rm -f src/mpi/errhan/*.lo rm -f src/mpi/group/*.o rm -f src/mpi/group/*.lo rm -f src/mpi/info/*.o rm -f src/mpi/info/*.lo rm -f src/mpi/init/*.o rm -f src/mpi/init/*.lo rm -f src/mpi/misc/*.o rm -f src/mpi/misc/*.lo rm -f src/mpi/pt2pt/*.o rm -f src/mpi/pt2pt/*.lo rm -f src/mpi/request/*.o rm -f src/mpi/request/*.lo rm -f src/mpi/rma/*.o rm -f src/mpi/rma/*.lo rm -f src/mpi/spawn/*.o rm -f src/mpi/spawn/*.lo rm -f src/mpi/timer/*.o rm -f src/mpi/timer/*.lo rm -f src/mpi/topo/*.o rm -f src/mpi/topo/*.lo rm -f src/mpi_t/*.o rm -f src/mpi_t/*.lo rm -f src/mpid/ch3/channels/nemesis/netmod/llc/*.o rm -f src/mpid/ch3/channels/nemesis/netmod/llc/*.lo rm -f src/mpid/ch3/channels/nemesis/netmod/mxm/*.o rm -f src/mpid/ch3/channels/nemesis/netmod/mxm/*.lo rm -f src/mpid/ch3/channels/nemesis/netmod/none/*.o rm -f src/mpid/ch3/channels/nemesis/netmod/none/*.lo rm -f src/mpid/ch3/channels/nemesis/netmod/ofi/*.o rm -f src/mpid/ch3/channels/nemesis/netmod/ofi/*.lo rm -f src/mpid/ch3/channels/nemesis/netmod/portals4/*.o rm -f src/mpid/ch3/channels/nemesis/netmod/portals4/*.lo rm -f src/mpid/ch3/channels/nemesis/netmod/tcp/*.o rm -f src/mpid/ch3/channels/nemesis/netmod/tcp/*.lo rm -f src/mpid/ch3/channels/nemesis/src/*.o rm -f src/mpid/ch3/channels/nemesis/src/*.lo rm -f src/mpid/ch3/channels/nemesis/utils/monitor/*.o rm -f src/mpid/ch3/channels/nemesis/utils/monitor/*.lo rm -f src/mpid/ch3/channels/nemesis/utils/replacements/*.o rm -f src/mpid/ch3/channels/nemesis/utils/replacements/*.lo rm -f src/mpid/ch3/channels/sock/src/*.o rm -f src/mpid/ch3/channels/sock/src/*.lo rm -f src/mpid/ch3/src/*.o rm -f src/mpid/ch3/src/*.lo rm -f src/mpid/ch3/util/ftb/*.o rm -f src/mpid/ch3/util/ftb/*.lo rm -f src/mpid/ch3/util/sock/*.o rm -f src/mpid/ch3/util/sock/*.lo rm -f src/mpid/ch4/generic/*.o rm -f src/mpid/ch4/generic/*.lo rm -f src/mpid/ch4/netmod/ofi/*.o rm -f src/mpid/ch4/netmod/ofi/*.lo rm -f src/mpid/ch4/netmod/portals4/*.o rm -f src/mpid/ch4/netmod/portals4/*.lo rm -f src/mpid/ch4/netmod/stubnm/*.o rm -f src/mpid/ch4/netmod/stubnm/*.lo rm -f src/mpid/ch4/netmod/ucx/*.o rm -f src/mpid/ch4/netmod/ucx/*.lo rm -f src/mpid/ch4/shm/posix/*.o rm -f src/mpid/ch4/shm/posix/*.lo rm -f src/mpid/ch4/shm/src/*.o rm -f src/mpid/ch4/shm/src/*.lo rm -f src/mpid/ch4/shm/stubshm/*.o rm -f src/mpid/ch4/shm/stubshm/*.lo rm -f src/mpid/ch4/src/*.o rm -f src/mpid/ch4/src/*.lo rm -f src/mpid/common/bc/*.o rm -f src/mpid/common/bc/*.lo rm -f src/mpid/common/hcoll/*.o rm -f src/mpid/common/hcoll/*.lo rm -f src/mpid/common/sched/*.o rm -f src/mpid/common/sched/*.lo rm -f src/mpid/common/shm/*.o rm -f src/mpid/common/shm/*.lo rm -f src/mutex/*.o rm -f src/mutex/*.lo rm -f src/nameserv/file/*.o rm -f src/nameserv/file/*.lo rm -f src/nameserv/pmi/*.o rm -f src/nameserv/pmi/*.lo rm -f src/pm/gforker/*.o rm -f src/pm/remshell/*.o rm -f src/pm/util/*.o rm -f src/pm/util/*.lo rm -f src/pmi/pmi2/simple/*.o rm -f src/pmi/pmi2/simple/*.lo rm -f src/pmi/simple/*.o rm -f src/pmi/simple/*.lo rm -f src/util/assert/*.o rm -f src/util/assert/*.lo rm -f src/util/cvar/*.o rm -f src/util/cvar/*.lo rm -f src/util/logging/rlog/*.o rm -f src/util/logging/rlog/*.lo rm -f src/util/mem/*.o rm -f src/util/mem/*.lo rm -f src/util/procmap/*.o rm -f src/util/procmap/*.lo rm -f *.lo make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2' Making clean in examples make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/examples' rm -rf .libs _libs rm -f cpi rm -f *.o rm -f *.lo make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/examples' Running Executable WITHOUT threads to time it out Executing: /usr/bin/make -j40 -l96.0 stdout: if test ! -h ./src/include/mpio.h ; then \ rm -f ./src/include/mpio.h ; \ ( cd ./src/include && \ ln -s ../mpi/romio/include/mpio.h ) ; \ fi /usr/bin/make all-recursive make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2' Making all in src/mpl make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/mpl' CC src/dbg/mpl_dbg.lo CC src/bt/mpl_bt.lo CC src/env/mpl_env.lo CC src/mem/mpl_trmem.lo CC src/msg/mpl_msg.lo CC src/sock/mpl_sockaddr.lo CC src/sock/mpl_sock.lo CC src/str/mpl_str.lo CC src/sock/mpl_host.lo CC src/str/mpl_arg_serial.lo CC src/str/mpl_argstr.lo CC src/thread/mpl_thread.lo CC src/thread/mpl_thread_win.lo CC src/thread/mpl_thread_solaris.lo CC src/thread/mpl_thread_argobots.lo CC src/timer/mpl_timer_gethrtime.lo CC src/timer/mpl_timer_clock_gettime.lo CC src/timer/mpl_timer_gcc_ia64_cycle.lo CC src/thread/mpl_thread_posix.lo CC src/timer/mpl_timer_gettimeofday.lo CC src/timer/mpl_timer_linux86_cycle.lo CC src/timer/mpl_timer_mach_absolute_time.lo CC src/timer/mpl_timer_ppc64_cycle.lo CC src/timer/mpl_timer_win86_cycle.lo CC src/timer/mpl_timer_query_performance_counter.lo CC src/timer/mpl_timer_device.lo CC src/shm/mpl_shm.lo CC src/shm/mpl_shm_sysv.lo CC src/shm/mpl_shm_mmap.lo CC src/shm/mpl_shm_win.lo CCLD libmpl.la make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/mpl' Making all in src/openpa make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa' Making all in src make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa/src' /usr/bin/make all-am make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa/src' CC opa_primitives.lo CC opa_queue.lo CCLD libopa.la make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa/src' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa/src' Making all in test make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa/test' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa/test' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa' Making all in src/hwloc make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc' Making all in include make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc/include' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc/include' Making all in hwloc make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc/hwloc' CC topology.lo CC traversal.lo CC distances.lo CC components.lo CC bind.lo CC bitmap.lo CC pci-common.lo CC diff.lo CC shmem.lo CC misc.lo CC base64.lo CC topology-noos.lo CC topology-xml-nolibxml.lo CC topology-synthetic.lo CC topology-xml.lo CC topology-linux.lo CC topology-hardwired.lo CC topology-x86.lo CCLD libhwloc_embedded.la make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc/hwloc' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc' Making all in src/mpi/romio make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/mpi/romio' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/mpi/romio' CC mpi-io/close.lo CC mpi-io/delete.lo CC mpi-io/file_c2f.lo CC mpi-io/file_f2c.lo CC mpi-io/fsync.lo CC mpi-io/get_amode.lo CC mpi-io/get_atom.lo CC mpi-io/get_bytoff.lo CC mpi-io/get_info.lo CC mpi-io/get_extent.lo CC mpi-io/get_group.lo CC mpi-io/get_posn.lo CC mpi-io/get_posn_sh.lo CC mpi-io/get_view.lo CC mpi-io/get_size.lo CC mpi-io/iread_all.lo CC mpi-io/iread.lo CC mpi-io/iread_atall.lo CC mpi-io/iread_at.lo CC mpi-io/iread_sh.lo CC mpi-io/iwrite.lo CC mpi-io/iwrite_all.lo CC mpi-io/iwrite_at.lo CC mpi-io/iwrite_atall.lo CC mpi-io/iwrite_sh.lo CC mpi-io/open.lo CC mpi-io/rd_atallb.lo CC mpi-io/prealloc.lo CC mpi-io/read.lo CC mpi-io/rd_atalle.lo CC mpi-io/read_all.lo CC mpi-io/read_allb.lo CC mpi-io/read_alle.lo CC mpi-io/read_at.lo CC mpi-io/read_atall.lo CC mpi-io/read_ord.lo CC mpi-io/read_ordb.lo CC mpi-io/read_orde.lo CC mpi-io/read_sh.lo CC mpi-io/register_datarep.lo CC mpi-io/seek.lo CC mpi-io/seek_sh.lo CC mpi-io/set_atom.lo CC mpi-io/set_info.lo CC mpi-io/set_size.lo CC mpi-io/set_view.lo CC mpi-io/wr_atallb.lo CC mpi-io/wr_atalle.lo CC mpi-io/write.lo CC mpi-io/write_all.lo CC mpi-io/write_allb.lo CC mpi-io/write_alle.lo CC mpi-io/write_at.lo CC mpi-io/write_atall.lo CC mpi-io/write_ord.lo CC mpi-io/write_ordb.lo CC mpi-io/write_orde.lo CC mpi-io/write_sh.lo CC mpi-io/glue/mpich/mpio_file.lo CC mpi-io/glue/mpich/mpio_err.lo CC mpi-io/mpich_fileutil.lo CC mpi-io/mpir-mpioinit.lo CC mpi-io/mpiu_greq.lo CC mpi-io/mpiu_external32.lo CC mpi-io/mpir_cst_filesys.lo CC adio/ad_nfs/ad_nfs_read.lo CC adio/ad_nfs/ad_nfs_open.lo CC adio/ad_nfs/ad_nfs_write.lo CC adio/ad_nfs/ad_nfs_fcntl.lo CC adio/ad_nfs/ad_nfs_done.lo CC adio/ad_nfs/ad_nfs_iread.lo CC adio/ad_nfs/ad_nfs_iwrite.lo CC adio/ad_nfs/ad_nfs_wait.lo CC adio/ad_nfs/ad_nfs_setsh.lo CC adio/ad_nfs/ad_nfs_getsh.lo CC adio/ad_nfs/ad_nfs.lo CC adio/ad_nfs/ad_nfs_resize.lo CC adio/ad_nfs/ad_nfs_features.lo CC adio/ad_testfs/ad_testfs_close.lo CC adio/ad_testfs/ad_testfs_read.lo CC adio/ad_testfs/ad_testfs_rdcoll.lo CC adio/ad_testfs/ad_testfs_wrcoll.lo CC adio/ad_testfs/ad_testfs_open.lo CC adio/ad_testfs/ad_testfs_write.lo CC adio/ad_testfs/ad_testfs_done.lo CC adio/ad_testfs/ad_testfs_fcntl.lo CC adio/ad_testfs/ad_testfs_iread.lo CC adio/ad_testfs/ad_testfs_iwrite.lo CC adio/ad_testfs/ad_testfs_wait.lo CC adio/ad_testfs/ad_testfs_flush.lo CC adio/ad_testfs/ad_testfs_seek.lo CC adio/ad_testfs/ad_testfs_resize.lo CC adio/ad_testfs/ad_testfs_hints.lo CC adio/ad_testfs/ad_testfs_delete.lo CC adio/ad_testfs/ad_testfs.lo CC adio/ad_ufs/ad_ufs.lo CC adio/ad_ufs/ad_ufs_open.lo CC adio/common/ad_aggregate.lo CC adio/common/ad_aggregate_new.lo CC adio/common/ad_close.lo CC adio/common/ad_coll_build_req_new.lo CC adio/common/ad_coll_exch_new.lo CC adio/common/ad_darray.lo CC adio/common/ad_delete.lo CC adio/common/ad_done.lo CC adio/common/ad_done_fake.lo CC adio/common/ad_end.lo CC adio/common/ad_fcntl.lo CC adio/common/ad_features.lo CC adio/common/ad_flush.lo CC adio/common/ad_fstype.lo CC adio/common/ad_get_sh_fp.lo CC adio/common/ad_hints.lo CC adio/common/ad_init.lo CC adio/common/ad_io_coll.lo CC adio/common/ad_iopen.lo CC adio/common/ad_iread.lo CC adio/common/ad_iread_coll.lo CC adio/common/ad_iread_fake.lo CC adio/common/ad_iwrite.lo CC adio/common/ad_iwrite_coll.lo CC adio/common/ad_iwrite_fake.lo CC adio/common/ad_open.lo CC adio/common/ad_opencoll.lo CC adio/common/ad_opencoll_failsafe.lo CC adio/common/ad_opencoll_scalable.lo CC adio/common/ad_prealloc.lo CC adio/common/ad_read.lo CC adio/common/ad_read_coll.lo CC adio/common/ad_read_str_naive.lo CC adio/common/ad_read_str.lo CC adio/common/ad_resize.lo CC adio/common/ad_seek.lo CC adio/common/ad_set_sh_fp.lo CC adio/common/ad_set_view.lo CC adio/common/ad_subarray.lo CC adio/common/ad_wait.lo CC adio/common/ad_wait_fake.lo CC adio/common/ad_write.lo CC adio/common/ad_write_coll.lo CC adio/common/ad_write_nolock.lo CC adio/common/ad_write_str.lo CC adio/common/ad_write_str_naive.lo CC adio/common/adi_close.lo CC adio/common/byte_offset.lo CC adio/common/cb_config_list.lo CC adio/common/eof_offset.lo CC adio/common/error.lo CC adio/common/flatten.lo CC adio/common/get_fp_posn.lo CC adio/common/greq_fns.lo CC adio/common/heap_sort.lo CC adio/common/iscontig.lo CC adio/common/lock.lo CC adio/common/malloc.lo CC adio/common/shfp_fname.lo CC adio/common/status_setb.lo CC adio/common/strfns.lo CC adio/common/system_hints.lo CC adio/common/hint_fns.lo CC adio/common/ad_threaded_io.lo CC adio/common/p2p_aggregation.lo CC adio/common/onesided_aggregation.lo CC adio/common/ad_tuning.lo CC adio/common/utils.lo CCLD libromio.la make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/mpi/romio' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/mpi/romio' Making all in src/pm/hydra make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra' Making all in mpl make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/mpl' CC src/mem/mpl_trmem.lo CC src/bt/mpl_bt.lo CC src/dbg/mpl_dbg.lo CC src/env/mpl_env.lo CC src/msg/mpl_msg.lo CC src/sock/mpl_sock.lo CC src/sock/mpl_host.lo CC src/sock/mpl_sockaddr.lo CC src/str/mpl_str.lo CC src/str/mpl_argstr.lo CC src/str/mpl_arg_serial.lo CC src/thread/mpl_thread_win.lo CC src/thread/mpl_thread_solaris.lo CC src/thread/mpl_thread.lo CC src/thread/mpl_thread_argobots.lo CC src/thread/mpl_thread_posix.lo CC src/timer/mpl_timer_clock_gettime.lo CC src/timer/mpl_timer_gcc_ia64_cycle.lo CC src/timer/mpl_timer_gethrtime.lo CC src/timer/mpl_timer_mach_absolute_time.lo CC src/timer/mpl_timer_linux86_cycle.lo CC src/timer/mpl_timer_gettimeofday.lo CC src/timer/mpl_timer_ppc64_cycle.lo CC src/timer/mpl_timer_query_performance_counter.lo CC src/shm/mpl_shm.lo CC src/timer/mpl_timer_device.lo CC src/shm/mpl_shm_sysv.lo CC src/timer/mpl_timer_win86_cycle.lo CC src/shm/mpl_shm_mmap.lo CC src/shm/mpl_shm_win.lo CCLD libmpl.la make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/mpl' Making all in tools/topo/hwloc/hwloc make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc' Making all in include make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/include' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/include' Making all in hwloc make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/hwloc' CC topology.lo CC traversal.lo CC distances.lo CC components.lo CC bind.lo CC bitmap.lo CC pci-common.lo CC diff.lo CC shmem.lo CC misc.lo CC base64.lo CC topology-noos.lo CC topology-synthetic.lo CC topology-linux.lo CC topology-xml.lo CC topology-xml-nolibxml.lo CC topology-hardwired.lo CC topology-x86.lo CCLD libhwloc_embedded.la make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/hwloc' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc' make[4]: Nothing to be done for 'all-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc' Making all in . make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra' CC tools/bootstrap/persist/hydra_persist-persist_server.o CC utils/alloc/alloc.lo CC utils/args/args.lo CC utils/launch/launch.lo CC utils/dbg/dbg.lo CC utils/env/env.lo CC utils/sock/sock.lo CC utils/others/others.lo CC utils/signals/signals.lo CC utils/string/string.lo CC tools/topo/topo.lo CC tools/topo/hwloc/topo_hwloc.lo CC tools/bootstrap/src/bsci_init.lo CC tools/bootstrap/src/bsci_finalize.lo CC tools/bootstrap/src/bsci_launch.lo CC tools/bootstrap/src/bsci_query_node_list.lo CC tools/bootstrap/src/bsci_query_proxy_id.lo CC tools/bootstrap/src/bsci_wait.lo CC tools/bootstrap/src/bsci_env.lo CC tools/bootstrap/src/bsci_query_native_int.lo CC tools/bootstrap/utils/bscu_cb.lo CC tools/bootstrap/utils/bscu_wait.lo CC tools/bootstrap/external/external_common.lo CC tools/bootstrap/external/user_init.lo CC tools/bootstrap/external/fork_init.lo CC tools/bootstrap/external/external_common_launch.lo CC tools/bootstrap/external/manual_init.lo CC tools/bootstrap/external/rsh_env.lo CC tools/bootstrap/external/ssh_init.lo CC tools/bootstrap/external/rsh_init.lo CC tools/bootstrap/external/ssh.lo CC tools/bootstrap/external/ssh_env.lo CC tools/bootstrap/external/slurm_init.lo CC tools/bootstrap/external/ssh_finalize.lo CC tools/bootstrap/external/slurm_launch.lo CC tools/bootstrap/external/slurm_env.lo CC tools/bootstrap/external/slurm_query_node_list.lo CC tools/bootstrap/external/slurm_query_native_int.lo CC tools/bootstrap/external/ll_init.lo CC tools/bootstrap/external/slurm_query_proxy_id.lo CC tools/bootstrap/external/ll_launch.lo CC tools/bootstrap/external/ll_query_native_int.lo CC tools/bootstrap/external/ll_query_node_list.lo CC tools/bootstrap/external/ll_query_proxy_id.lo CC tools/bootstrap/external/ll_env.lo CC tools/bootstrap/external/lsf_init.lo CC tools/bootstrap/external/lsf_query_native_int.lo CC tools/bootstrap/external/lsf_query_node_list.lo CC tools/bootstrap/external/lsf_env.lo CC tools/bootstrap/external/sge_init.lo CC tools/bootstrap/external/sge_query_native_int.lo CC tools/bootstrap/external/sge_query_node_list.lo CC tools/bootstrap/external/sge_env.lo CC tools/bootstrap/external/pbs_init.lo CC tools/bootstrap/external/pbs_query_native_int.lo CC tools/bootstrap/external/pbs_query_node_list.lo CC tools/bootstrap/external/cobalt_init.lo CC tools/bootstrap/external/cobalt_query_native_int.lo CC tools/bootstrap/external/cobalt_query_node_list.lo CC tools/bootstrap/persist/persist_init.lo CC tools/bootstrap/persist/persist_launch.lo CC tools/bootstrap/persist/persist_wait.lo CC tools/ckpoint/ckpoint.lo CC tools/ckpoint/blcr/ckpoint_blcr.lo CC tools/demux/demux.lo CC tools/demux/demux_poll.lo CC tools/demux/demux_select.lo CC tools/debugger/debugger.lo CC ui/utils/uiu.lo CC pm/pmiserv/pmiserv_pmi.lo CC pm/pmiserv/pmiserv_pmi_v1.lo CC pm/pmiserv/pmiserv_pmi_v2.lo CC pm/pmiserv/pmiserv_pmci.lo CC pm/pmiserv/pmiserv_cb.lo CC pm/pmiserv/pmiserv_utils.lo CC pm/pmiserv/common.lo CC pm/pmiserv/pmi_v2_common.lo CC tools/nameserver/hydra_nameserver-hydra_nameserver.o CC pm/pmiserv/hydra_pmi_proxy-pmip.o CC pm/pmiserv/hydra_pmi_proxy-pmip_cb.o CC pm/pmiserv/hydra_pmi_proxy-pmip_utils.o CC pm/pmiserv/hydra_pmi_proxy-pmip_pmi_v2.o CC pm/pmiserv/hydra_pmi_proxy-pmip_pmi_v1.o CC pm/pmiserv/hydra_pmi_proxy-common.o CC pm/pmiserv/hydra_pmi_proxy-pmi_v2_common.o CC ui/mpich/mpiexec.o CC ui/mpich/utils.o CCLD libhydra.la CCLD hydra_persist CCLD hydra_nameserver CCLD hydra_pmi_proxy CCLD libpm.la CCLD mpiexec.hydra make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra' Making all in . make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2' CC src/mpi/attr/lib_libmpi_la-attrutil.lo CC src/mpi/attr/lib_libmpi_la-dup_fn.lo CC src/mpi/coll/allgather/lib_libmpi_la-allgather_allcomm_nb.lo CC src/mpi/coll/allgather/lib_libmpi_la-allgather_intra_recursive_doubling.lo CC src/mpi/coll/allgather/lib_libmpi_la-allgather_intra_brucks.lo CC src/mpi/coll/allgather/lib_libmpi_la-allgather_intra_ring.lo CC src/mpi/coll/allgather/lib_libmpi_la-allgather_inter_local_gather_remote_bcast.lo CC src/mpi/coll/allgatherv/lib_libmpi_la-allgatherv_allcomm_nb.lo CC src/mpi/coll/allgatherv/lib_libmpi_la-allgatherv_intra_recursive_doubling.lo CC src/mpi/coll/allgatherv/lib_libmpi_la-allgatherv_intra_brucks.lo CC src/mpi/coll/allgatherv/lib_libmpi_la-allgatherv_intra_ring.lo CC src/mpi/coll/allgatherv/lib_libmpi_la-allgatherv_inter_remote_gather_local_bcast.lo CC src/mpi/coll/allreduce/lib_libmpi_la-allreduce_allcomm_nb.lo CC src/mpi/coll/allreduce/lib_libmpi_la-allreduce_intra_recursive_doubling.lo CC src/mpi/coll/allreduce/lib_libmpi_la-allreduce_intra_reduce_scatter_allgather.lo CC src/mpi/coll/allreduce/lib_libmpi_la-allreduce_intra_smp.lo CC src/mpi/coll/allreduce/lib_libmpi_la-allreduce_inter_reduce_exchange_bcast.lo CC src/mpi/coll/alltoall/lib_libmpi_la-alltoall_allcomm_nb.lo CC src/mpi/coll/alltoall/lib_libmpi_la-alltoall_intra_pairwise_sendrecv_replace.lo CC src/mpi/coll/alltoall/lib_libmpi_la-alltoall_intra_scattered.lo CC src/mpi/coll/alltoall/lib_libmpi_la-alltoall_intra_brucks.lo CC src/mpi/coll/alltoall/lib_libmpi_la-alltoall_intra_pairwise.lo CC src/mpi/coll/alltoall/lib_libmpi_la-alltoall_inter_pairwise_exchange.lo CC src/mpi/coll/alltoallv/lib_libmpi_la-alltoallv_intra_pairwise_sendrecv_replace.lo CC src/mpi/coll/alltoallv/lib_libmpi_la-alltoallv_allcomm_nb.lo CC src/mpi/coll/alltoallv/lib_libmpi_la-alltoallv_intra_scattered.lo CC src/mpi/coll/alltoallv/lib_libmpi_la-alltoallv_inter_pairwise_exchange.lo CC src/mpi/coll/alltoallw/lib_libmpi_la-alltoallw_allcomm_nb.lo CC src/mpi/coll/alltoallw/lib_libmpi_la-alltoallw_intra_pairwise_sendrecv_replace.lo CC src/mpi/coll/alltoallw/lib_libmpi_la-alltoallw_intra_scattered.lo CC src/mpi/coll/barrier/lib_libmpi_la-barrier_allcomm_nb.lo CC src/mpi/coll/alltoallw/lib_libmpi_la-alltoallw_inter_pairwise_exchange.lo CC src/mpi/coll/barrier/lib_libmpi_la-barrier_intra_dissemination.lo CC src/mpi/coll/barrier/lib_libmpi_la-barrier_intra_smp.lo CC src/mpi/coll/barrier/lib_libmpi_la-barrier_inter_bcast.lo CC src/mpi/coll/bcast/lib_libmpi_la-bcast_utils.lo CC src/mpi/coll/bcast/lib_libmpi_la-bcast_intra_binomial.lo CC src/mpi/coll/bcast/lib_libmpi_la-bcast_allcomm_nb.lo CC src/mpi/coll/bcast/lib_libmpi_la-bcast_intra_scatter_recursive_doubling_allgather.lo CC src/mpi/coll/bcast/lib_libmpi_la-bcast_intra_scatter_ring_allgather.lo CC src/mpi/coll/bcast/lib_libmpi_la-bcast_intra_smp.lo CC src/mpi/coll/bcast/lib_libmpi_la-bcast_inter_remote_send_local_bcast.lo CC src/mpi/coll/exscan/lib_libmpi_la-exscan_allcomm_nb.lo CC src/mpi/coll/exscan/lib_libmpi_la-exscan_intra_recursive_doubling.lo CC src/mpi/coll/gather/lib_libmpi_la-gather_allcomm_nb.lo CC src/mpi/coll/gather/lib_libmpi_la-gather_intra_binomial.lo CC src/mpi/coll/gather/lib_libmpi_la-gather_inter_linear.lo CC src/mpi/coll/gather/lib_libmpi_la-gather_inter_local_gather_remote_send.lo CC src/mpi/coll/gatherv/lib_libmpi_la-gatherv_allcomm_nb.lo CC src/mpi/coll/gatherv/lib_libmpi_la-gatherv_allcomm_linear.lo CC src/mpi/coll/reduce_scatter/lib_libmpi_la-reduce_scatter_allcomm_nb.lo CC src/mpi/coll/reduce_scatter/lib_libmpi_la-reduce_scatter_intra_recursive_halving.lo CC src/mpi/coll/reduce_scatter/lib_libmpi_la-reduce_scatter_intra_pairwise.lo CC src/mpi/coll/reduce_scatter/lib_libmpi_la-reduce_scatter_intra_recursive_doubling.lo CC src/mpi/coll/reduce_scatter/lib_libmpi_la-reduce_scatter_inter_remote_reduce_local_scatter.lo CC src/mpi/coll/reduce_scatter/lib_libmpi_la-reduce_scatter_intra_noncommutative.lo CC src/mpi/coll/reduce_scatter_block/lib_libmpi_la-reduce_scatter_block_allcomm_nb.lo CC src/mpi/coll/reduce_scatter_block/lib_libmpi_la-reduce_scatter_block_intra_recursive_halving.lo CC src/mpi/coll/reduce_scatter_block/lib_libmpi_la-reduce_scatter_block_intra_pairwise.lo CC src/mpi/coll/reduce_scatter_block/lib_libmpi_la-reduce_scatter_block_intra_recursive_doubling.lo CC src/mpi/coll/reduce_scatter_block/lib_libmpi_la-reduce_scatter_block_intra_noncommutative.lo CC src/mpi/coll/reduce_scatter_block/lib_libmpi_la-reduce_scatter_block_inter_remote_reduce_local_scatter.lo CC src/mpi/coll/reduce/lib_libmpi_la-reduce_allcomm_nb.lo CC src/mpi/coll/reduce/lib_libmpi_la-reduce_intra_binomial.lo CC src/mpi/coll/reduce/lib_libmpi_la-reduce_intra_reduce_scatter_gather.lo CC src/mpi/coll/reduce/lib_libmpi_la-reduce_intra_smp.lo CC src/mpi/coll/reduce/lib_libmpi_la-reduce_inter_local_reduce_remote_send.lo CC src/mpi/coll/scan/lib_libmpi_la-scan_allcomm_nb.lo CC src/mpi/coll/scan/lib_libmpi_la-scan_intra_recursive_doubling.lo CC src/mpi/coll/scan/lib_libmpi_la-scan_intra_smp.lo CC src/mpi/coll/scatter/lib_libmpi_la-scatter_allcomm_nb.lo CC src/mpi/coll/scatter/lib_libmpi_la-scatter_intra_binomial.lo CC src/mpi/coll/scatter/lib_libmpi_la-scatter_inter_linear.lo CC src/mpi/coll/scatter/lib_libmpi_la-scatter_inter_remote_send_local_scatter.lo CC src/mpi/coll/scatterv/lib_libmpi_la-scatterv_allcomm_nb.lo CC src/mpi/coll/scatterv/lib_libmpi_la-scatterv_allcomm_linear.lo CC src/mpi/coll/neighbor_allgather/lib_libmpi_la-neighbor_allgather_allcomm_nb.lo CC src/mpi/coll/neighbor_allgatherv/lib_libmpi_la-neighbor_allgatherv_allcomm_nb.lo CC src/mpi/coll/neighbor_alltoall/lib_libmpi_la-neighbor_alltoall_allcomm_nb.lo CC src/mpi/coll/neighbor_alltoallv/lib_libmpi_la-neighbor_alltoallv_allcomm_nb.lo CC src/mpi/coll/neighbor_alltoallw/lib_libmpi_la-neighbor_alltoallw_allcomm_nb.lo CC src/mpi/coll/iallgather/lib_libmpi_la-iallgather_intra_recursive_doubling.lo CC src/mpi/coll/iallgather/lib_libmpi_la-iallgather_intra_brucks.lo CC src/mpi/coll/iallgather/lib_libmpi_la-iallgather_intra_ring.lo CC src/mpi/coll/iallgather/lib_libmpi_la-iallgather_inter_local_gather_remote_bcast.lo CC src/mpi/coll/iallgather/lib_libmpi_la-iallgather_gentran_algos.lo CC src/mpi/coll/iallgather/lib_libmpi_la-iallgather_intra_recexch_distance_doubling.lo CC src/mpi/coll/iallgather/lib_libmpi_la-iallgather_intra_recexch_distance_halving.lo CC src/mpi/coll/iallgather/lib_libmpi_la-iallgather_intra_gentran_brucks.lo CC src/mpi/coll/iallgatherv/lib_libmpi_la-iallgatherv_intra_recursive_doubling.lo CC src/mpi/coll/iallgatherv/lib_libmpi_la-iallgatherv_intra_brucks.lo CC src/mpi/coll/iallgatherv/lib_libmpi_la-iallgatherv_intra_ring.lo CC src/mpi/coll/iallgatherv/lib_libmpi_la-iallgatherv_inter_remote_gather_local_bcast.lo CC src/mpi/coll/iallgatherv/lib_libmpi_la-iallgatherv_gentran_algos.lo CC src/mpi/coll/iallgatherv/lib_libmpi_la-iallgatherv_intra_recexch_distance_doubling.lo CC src/mpi/coll/iallgatherv/lib_libmpi_la-iallgatherv_intra_recexch_distance_halving.lo CC src/mpi/coll/iallgatherv/lib_libmpi_la-iallgatherv_intra_gentran_ring.lo CC src/mpi/coll/iallreduce/lib_libmpi_la-iallreduce_intra_naive.lo CC src/mpi/coll/iallreduce/lib_libmpi_la-iallreduce_intra_reduce_scatter_allgather.lo CC src/mpi/coll/iallreduce/lib_libmpi_la-iallreduce_intra_recursive_doubling.lo CC src/mpi/coll/iallreduce/lib_libmpi_la-iallreduce_intra_smp.lo CC src/mpi/coll/iallreduce/lib_libmpi_la-iallreduce_inter_remote_reduce_local_bcast.lo CC src/mpi/coll/iallreduce/lib_libmpi_la-iallreduce_gentran_algos.lo CC src/mpi/coll/iallreduce/lib_libmpi_la-iallreduce_intra_recexch_single_buffer.lo CC src/mpi/coll/iallreduce/lib_libmpi_la-iallreduce_intra_recexch_multiple_buffer.lo CC src/mpi/coll/iallreduce/lib_libmpi_la-iallreduce_intra_tree_kary.lo CC src/mpi/coll/iallreduce/lib_libmpi_la-iallreduce_intra_tree_knomial.lo CC src/mpi/coll/ialltoall/lib_libmpi_la-ialltoall_intra_inplace.lo CC src/mpi/coll/ialltoall/lib_libmpi_la-ialltoall_intra_brucks.lo CC src/mpi/coll/ialltoall/lib_libmpi_la-ialltoall_intra_permuted_sendrecv.lo CC src/mpi/coll/ialltoall/lib_libmpi_la-ialltoall_intra_pairwise.lo CC src/mpi/coll/ialltoall/lib_libmpi_la-ialltoall_inter_pairwise_exchange.lo CC src/mpi/coll/ialltoallv/lib_libmpi_la-ialltoallv_intra_inplace.lo CC src/mpi/coll/ialltoallv/lib_libmpi_la-ialltoallv_intra_blocked.lo CC src/mpi/coll/ialltoallv/lib_libmpi_la-ialltoallv_inter_pairwise_exchange.lo CC src/mpi/coll/ialltoallw/lib_libmpi_la-ialltoallw_intra_inplace.lo CC src/mpi/coll/ialltoallw/lib_libmpi_la-ialltoallw_intra_blocked.lo CC src/mpi/coll/ialltoallw/lib_libmpi_la-ialltoallw_inter_pairwise_exchange.lo CC src/mpi/coll/ibarrier/lib_libmpi_la-ibarrier_intra_recursive_doubling.lo CC src/mpi/coll/ibarrier/lib_libmpi_la-ibarrier_inter_bcast.lo CC src/mpi/coll/ibarrier/lib_libmpi_la-ibarrier_intra_recexch.lo CC src/mpi/coll/ibcast/lib_libmpi_la-ibcast_intra_binomial.lo CC src/mpi/coll/ibcast/lib_libmpi_la-ibcast_intra_scatter_ring_allgather.lo CC src/mpi/coll/ibcast/lib_libmpi_la-ibcast_intra_scatter_recursive_doubling_allgather.lo CC src/mpi/coll/ibcast/lib_libmpi_la-ibcast_intra_smp.lo CC src/mpi/coll/ibcast/lib_libmpi_la-ibcast_inter_flat.lo CC src/mpi/coll/ibcast/lib_libmpi_la-ibcast_gentran_algos.lo CC src/mpi/coll/ibcast/lib_libmpi_la-ibcast_intra_tree.lo CC src/mpi/coll/ibcast/lib_libmpi_la-ibcast_intra_scatter_recexch_allgather.lo CC src/mpi/coll/ibcast/lib_libmpi_la-ibcast_intra_ring.lo CC src/mpi/coll/ibcast/lib_libmpi_la-ibcast_utils.lo CC src/mpi/coll/iexscan/lib_libmpi_la-iexscan_intra_recursive_doubling.lo CC src/mpi/coll/igather/lib_libmpi_la-igather_intra_binomial.lo CC src/mpi/coll/igather/lib_libmpi_la-igather_inter_short.lo CC src/mpi/coll/igather/lib_libmpi_la-igather_inter_long.lo CC src/mpi/coll/igather/lib_libmpi_la-igather_gentran_algos.lo CC src/mpi/coll/igather/lib_libmpi_la-igather_intra_tree.lo CC src/mpi/coll/igatherv/lib_libmpi_la-igatherv_allcomm_linear.lo CC src/mpi/coll/ireduce_scatter/lib_libmpi_la-ireduce_scatter_intra_recursive_halving.lo CC src/mpi/coll/ireduce_scatter/lib_libmpi_la-ireduce_scatter_intra_pairwise.lo CC src/mpi/coll/ireduce_scatter/lib_libmpi_la-ireduce_scatter_intra_recursive_doubling.lo CC src/mpi/coll/ireduce_scatter/lib_libmpi_la-ireduce_scatter_intra_noncommutative.lo CC src/mpi/coll/ireduce_scatter/lib_libmpi_la-ireduce_scatter_inter_remote_reduce_local_scatterv.lo CC src/mpi/coll/ireduce_scatter/lib_libmpi_la-ireduce_scatter_gentran_algos.lo CC src/mpi/coll/ireduce_scatter/lib_libmpi_la-ireduce_scatter_intra_recexch.lo CC src/mpi/coll/ireduce_scatter_block/lib_libmpi_la-ireduce_scatter_block_intra_recursive_halving.lo CC src/mpi/coll/ireduce_scatter_block/lib_libmpi_la-ireduce_scatter_block_intra_pairwise.lo CC src/mpi/coll/ireduce_scatter_block/lib_libmpi_la-ireduce_scatter_block_intra_recursive_doubling.lo CC src/mpi/coll/ireduce_scatter_block/lib_libmpi_la-ireduce_scatter_block_intra_noncommutative.lo CC src/mpi/coll/ireduce_scatter_block/lib_libmpi_la-ireduce_scatter_block_inter_remote_reduce_local_scatterv.lo CC src/mpi/coll/ireduce_scatter_block/lib_libmpi_la-ireduce_scatter_block_gentran_algos.lo CC src/mpi/coll/ireduce_scatter_block/lib_libmpi_la-ireduce_scatter_block_intra_recexch.lo CC src/mpi/coll/ireduce/lib_libmpi_la-ireduce_intra_binomial.lo CC src/mpi/coll/ireduce/lib_libmpi_la-ireduce_intra_reduce_scatter_gather.lo CC src/mpi/coll/ireduce/lib_libmpi_la-ireduce_intra_smp.lo CC src/mpi/coll/ireduce/lib_libmpi_la-ireduce_inter_local_reduce_remote_send.lo CC src/mpi/coll/ireduce/lib_libmpi_la-ireduce_gentran_algos.lo CC src/mpi/coll/ireduce/lib_libmpi_la-ireduce_intra_tree.lo CC src/mpi/coll/ireduce/lib_libmpi_la-ireduce_intra_ring.lo CC src/mpi/coll/iscan/lib_libmpi_la-iscan_intra_recursive_doubling.lo CC src/mpi/coll/iscan/lib_libmpi_la-iscan_intra_smp.lo CC src/mpi/coll/iscatter/lib_libmpi_la-iscatter_intra_binomial.lo CC src/mpi/coll/iscatter/lib_libmpi_la-iscatter_inter_linear.lo CC src/mpi/coll/iscatter/lib_libmpi_la-iscatter_inter_remote_send_local_scatter.lo CC src/mpi/coll/iscatter/lib_libmpi_la-iscatter_gentran_algos.lo CC src/mpi/coll/iscatter/lib_libmpi_la-iscatter_intra_tree.lo CC src/mpi/coll/iscatterv/lib_libmpi_la-iscatterv_allcomm_linear.lo CC 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src/mpi/coll/op/lib_libmpi_la-opreplace.lo CC src/mpi/comm/lib_libmpi_la-commutil.lo CC src/mpi/comm/lib_libmpi_la-contextid.lo CC src/mpi/datatype/lib_libmpi_la-typeutil.lo CC src/mpi/datatype/lib_libmpi_la-ext32_datatype.lo CC src/mpi/datatype/lib_libmpi_la-looputil.lo CC src/mpi/datatype/lib_libmpi_la-type_blockindexed.lo CC src/mpi/datatype/lib_libmpi_la-type_create_pairtype.lo CC src/mpi/datatype/lib_libmpi_la-type_debug.lo CC src/mpi/datatype/lib_libmpi_la-type_flatten.lo CC src/mpi/errhan/lib_libmpi_la-errutil.lo CC src/mpi/errhan/lib_libmpi_la-dynerrutil.lo CC src/mpi/group/lib_libmpi_la-grouputil.lo CC src/mpi/info/lib_libmpi_la-infoutil.lo CC src/mpi/init/lib_libmpi_la-initinfo.lo CC src/mpi/init/lib_libmpi_la-async.lo CC src/mpi/init/lib_libmpi_la-netloc_util.lo CC src/mpi/pt2pt/lib_libmpi_la-bsendutil.lo CC src/mpi/request/lib_libmpi_la-mpir_request.lo CC src/mpi/rma/lib_libmpi_la-winutil.lo CC src/mpi/rma/lib_libmpi_la-rmatypeutil.lo CC src/mpi/topo/lib_libmpi_la-topoutil.lo CC src/binding/fortran/mpif_h/lib_libmpi_la-fdebug.lo CC src/binding/fortran/mpif_h/lib_libmpi_la-setbot.lo F77 src/binding/fortran/mpif_h/setbotf.lo CC src/binding/fortran/use_mpi/lib_libmpi_la-create_f90_util.lo CC src/glue/romio/lib_libmpi_la-glue_romio.lo CC src/mpi_t/lib_libmpi_la-mpit.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-sendf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-recvf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-get_countf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-bsendf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ssendf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-rsendf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-bufattachf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-bufdetachf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-isendf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ibsendf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-issendf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-irsendf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-irecvf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-waitf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-testf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-request_freef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-waitanyf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-testanyf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-waitallf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-testallf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-waitsomef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-testsomef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-iprobef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-probef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-cancelf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-testcancelf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-send_initf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-bsend_initf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ssend_initf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-rsend_initf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-recv_initf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-startf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-startallf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-sendrecvf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-sndrcvrplf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typecontigf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_vectorf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_hvectorf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_indexedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_hindexedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_structf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_extentf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_sizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_lbf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_ubf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_commitf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_freef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-get_elementsf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-packf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-unpackf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-pack_sizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-barrierf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-bcastf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-gatherf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-gathervf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-scatterf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-scattervf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-allgatherf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-allgathervf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-alltoallf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-alltoallvf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-alltoallwf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-exscanf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-reducef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-op_createf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-op_freef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-allreducef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-redscatf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-scanf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-group_sizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-group_rankf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-grouptranksf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-group_comparef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_groupf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-group_unionf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-groupinterf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-groupdifff.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-group_inclf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-group_exclf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-grouprinclf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-grouprexclf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-group_freef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_sizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_rankf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_comparef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_dupf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_dup_with_infof.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_createf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_splitf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_freef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commtesticf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commrsizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commrgroupf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-iccreatef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-icmergef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-keyval_freef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-attr_putf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-attr_getf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-attr_deletef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-topo_testf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-cart_createf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-dims_createf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-graph_createf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-graphdims_getf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-graph_getf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-cartdim_getf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-cart_getf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-cart_rankf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-cart_coordsf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-grfnbcountf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-grfnbrsf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-cart_shiftf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-cart_subf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-cart_mapf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-graph_mapf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-getpnamef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-get_versionf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-get_library_versionf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-errhcreatef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-errhsetf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-errhgetf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-errhfreef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-error_stringf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-error_classf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-finalizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-initializedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-abortf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-close_portf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_acceptf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_connectf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commdiscf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commparentf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_joinf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_spawnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-spawnmultf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-lookup_namef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-open_portf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-publish_namef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-unpubnamef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_set_infof.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_get_infof.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-accumulatef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-getf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-putf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_completef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_createf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_fencef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_freef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_get_groupf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_lockf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_postf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_startf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_testf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_unlockf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_waitf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_allocatef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_allocate_sharedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_shared_queryf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_create_dynamicf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_attachf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_detachf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_get_infof.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_set_infof.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-get_accumulatef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-fetch_and_opf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-compare_and_swapf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-rputf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-rgetf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-raccumulatef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-rget_accumulatef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_lock_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_unlock_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_flushf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_flush_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_flush_localf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_flush_local_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_syncf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-adderrclassf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-adderrcodef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-adderrstringf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commcallerrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commnewkeyf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commdelattrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commfreekeyf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_get_attrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commgetnamf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_set_attrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_set_namef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-filecallerrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-greqcompletef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-greqstartf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-isthrmainf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-query_threadf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-statgetclf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-statsetelf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typenewkeyf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typedelattrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_dupf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typefreekeyf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_get_attrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typegetcntsf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typegetenvf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typegnamef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typesetattrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typesetnamef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_match_sizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-wincallerrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-winnewkeyf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-windelattrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-winfreekeyf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_get_attrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_get_namef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_set_attrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_set_namef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-alloc_memf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commcreerrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commgeterrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commseterrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-filecreerrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-filegeterrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-fileseterrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-finalizedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-free_memf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-info_createf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-info_deletef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-info_dupf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-info_freef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-info_getf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-infognkf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-infognthkf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-infovallenf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-info_setf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-pack_externalf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-packesizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-reqgetstatf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typedarrayf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typechindf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typechvecf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typecindbf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_create_hindexed_blockf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typecresizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typecstructf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typecsubarrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typegetextentf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typegtextf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-unpackextf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-wincreerrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-wingeterrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-winseterrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-reduce_localf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-op_commutativef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-reduce_scatter_blockf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-dist_graph_create_adjacentf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-dist_graph_createf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-dist_graph_neighbors_countf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-dist_graph_neighborsf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-improbef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-imrecvf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-mprobef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-mrecvf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_idupf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ibarrierf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ibcastf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-igatherf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-igathervf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-iscatterf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-iscattervf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-iallgatherf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-iallgathervf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ialltoallf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ialltoallvf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ialltoallwf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ireducef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-iallreducef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ireduce_scatterf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ireduce_scatter_blockf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-iscanf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-iexscanf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ineighbor_allgatherf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ineighbor_allgathervf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ineighbor_alltoallf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ineighbor_alltoallvf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ineighbor_alltoallwf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-neighbor_allgatherf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-neighbor_alltoallf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-neighbor_allgathervf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-neighbor_alltoallvf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-neighbor_alltoallwf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_split_typef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-get_elements_xf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-status_set_elements_xf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_get_extent_xf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_get_true_extent_xf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_size_xf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_create_groupf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_failure_ackf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_failure_get_ackedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_revokef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_shrinkf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_agreef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_openf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_closef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_deletef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_set_sizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_preallocatef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_sizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_groupf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_amodef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_set_infof.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_infof.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_set_viewf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_viewf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_atf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_at_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_atf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_at_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_iread_atf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_iwrite_atf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_readf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_writef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_ireadf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_iwritef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_seekf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_positionf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_byte_offsetf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_sharedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_sharedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_iread_sharedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_iwrite_sharedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_orderedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_orderedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_seek_sharedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_position_sharedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_at_all_beginf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_at_all_endf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_at_all_beginf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_at_all_endf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_all_beginf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_all_endf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_all_beginf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_all_endf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_ordered_beginf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_ordered_endf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_ordered_beginf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_ordered_endf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_type_extentf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-register_datarepf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_set_atomicityf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_atomicityf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_syncf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_iread_at_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_iwrite_at_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_iread_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_iwrite_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-initf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-initthreadf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-pcontrolf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-addressf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-getaddressf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-wtimef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-wtickf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-aint_addf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-aint_difff.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-keyval_createf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-dup_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-null_del_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-null_copy_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-dup_comm_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-null_comm_del_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-null_comm_copy_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-dup_win_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-null_win_del_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-null_win_copy_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-dup_type_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-null_type_del_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-null_type_copy_fnf.lo CC src/binding/fortran/use_mpi/lib_libmpifort_la-typef90cmplxf.lo CC src/binding/fortran/use_mpi/lib_libmpifort_la-typef90realf.lo CC src/binding/fortran/use_mpi/lib_libmpifort_la-typef90intf.lo rm -f src/binding/fortran/use_mpi/mpifnoext.h sed -e 's/^C/\!/g' -e '/EXTERNAL/d' \ -e '/REAL\*8/d' \ -e '/DOUBLE PRECISION/d' \ -e '/MPI_WTICK/d' src/binding/fortran/mpif_h/mpif.h > src/binding/fortran/use_mpi/mpifnoext.h cp -p src/env/mpicc.bash src/env/mpicc cp -p src/env/mpifort.bash src/env/mpifort cp -p src/env/mpicxx.bash src/env/mpicxx CC src/mpi/attr/lib_libmpi_la-attr_delete.lo CC src/mpi/attr/lib_libmpi_la-attr_get.lo CC src/mpi/attr/lib_libmpi_la-attr_put.lo CC src/mpi/attr/lib_libmpi_la-comm_create_keyval.lo CC src/mpi/attr/lib_libmpi_la-comm_delete_attr.lo CC src/mpi/attr/lib_libmpi_la-comm_free_keyval.lo CC src/mpi/attr/lib_libmpi_la-comm_get_attr.lo CC src/mpi/attr/lib_libmpi_la-comm_set_attr.lo CC src/mpi/attr/lib_libmpi_la-keyval_create.lo CC src/mpi/attr/lib_libmpi_la-keyval_free.lo CC src/mpi/attr/lib_libmpi_la-type_create_keyval.lo CC src/mpi/attr/lib_libmpi_la-type_delete_attr.lo CC src/mpi/attr/lib_libmpi_la-type_free_keyval.lo CC src/mpi/attr/lib_libmpi_la-type_get_attr.lo CC src/mpi/attr/lib_libmpi_la-type_set_attr.lo CC src/mpi/attr/lib_libmpi_la-win_create_keyval.lo CC src/mpi/attr/lib_libmpi_la-win_delete_attr.lo CC src/mpi/attr/lib_libmpi_la-win_free_keyval.lo CC src/mpi/attr/lib_libmpi_la-win_get_attr.lo CC src/mpi/attr/lib_libmpi_la-win_set_attr.lo CC src/mpi/coll/allgather/lib_libmpi_la-allgather.lo CC src/mpi/coll/allgatherv/lib_libmpi_la-allgatherv.lo CC src/mpi/coll/allreduce/lib_libmpi_la-allreduce.lo CC src/mpi/coll/alltoall/lib_libmpi_la-alltoall.lo CC src/mpi/coll/alltoallv/lib_libmpi_la-alltoallv.lo CC src/mpi/coll/alltoallw/lib_libmpi_la-alltoallw.lo CC src/mpi/coll/barrier/lib_libmpi_la-barrier.lo CC src/mpi/coll/bcast/lib_libmpi_la-bcast.lo CC src/mpi/coll/exscan/lib_libmpi_la-exscan.lo CC src/mpi/coll/gather/lib_libmpi_la-gather.lo CC src/mpi/coll/gatherv/lib_libmpi_la-gatherv.lo CC src/mpi/coll/reduce_scatter/lib_libmpi_la-reduce_scatter.lo CC src/mpi/coll/reduce_scatter_block/lib_libmpi_la-reduce_scatter_block.lo CC src/mpi/coll/reduce/lib_libmpi_la-reduce.lo CC src/mpi/coll/scan/lib_libmpi_la-scan.lo CC src/mpi/coll/scatter/lib_libmpi_la-scatter.lo CC src/mpi/coll/scatterv/lib_libmpi_la-scatterv.lo CC src/mpi/coll/neighbor_allgather/lib_libmpi_la-neighbor_allgather.lo CC src/mpi/coll/neighbor_allgatherv/lib_libmpi_la-neighbor_allgatherv.lo CC src/mpi/coll/neighbor_alltoall/lib_libmpi_la-neighbor_alltoall.lo CC src/mpi/coll/neighbor_alltoallv/lib_libmpi_la-neighbor_alltoallv.lo CC src/mpi/coll/neighbor_alltoallw/lib_libmpi_la-neighbor_alltoallw.lo CC src/mpi/coll/iallgather/lib_libmpi_la-iallgather.lo CC src/mpi/coll/iallgatherv/lib_libmpi_la-iallgatherv.lo CC src/mpi/coll/iallreduce/lib_libmpi_la-iallreduce.lo CC src/mpi/coll/ialltoall/lib_libmpi_la-ialltoall.lo CC src/mpi/coll/ialltoallv/lib_libmpi_la-ialltoallv.lo CC src/mpi/coll/ialltoallw/lib_libmpi_la-ialltoallw.lo CC src/mpi/coll/ibarrier/lib_libmpi_la-ibarrier.lo CC src/mpi/coll/ibcast/lib_libmpi_la-ibcast.lo CC src/mpi/coll/iexscan/lib_libmpi_la-iexscan.lo CC src/mpi/coll/igather/lib_libmpi_la-igather.lo CC src/mpi/coll/igatherv/lib_libmpi_la-igatherv.lo CC src/mpi/coll/ireduce_scatter/lib_libmpi_la-ireduce_scatter.lo CC src/mpi/coll/ireduce_scatter_block/lib_libmpi_la-ireduce_scatter_block.lo CC src/mpi/coll/ireduce/lib_libmpi_la-ireduce.lo CC src/mpi/coll/iscan/lib_libmpi_la-iscan.lo CC src/mpi/coll/iscatter/lib_libmpi_la-iscatter.lo CC src/mpi/coll/iscatterv/lib_libmpi_la-iscatterv.lo CC src/mpi/coll/ineighbor_allgather/lib_libmpi_la-ineighbor_allgather.lo CC src/mpi/coll/ineighbor_allgatherv/lib_libmpi_la-ineighbor_allgatherv.lo CC src/mpi/coll/ineighbor_alltoall/lib_libmpi_la-ineighbor_alltoall.lo CC src/mpi/coll/ineighbor_alltoallv/lib_libmpi_la-ineighbor_alltoallv.lo CC src/mpi/coll/ineighbor_alltoallw/lib_libmpi_la-ineighbor_alltoallw.lo CC src/mpi/coll/op/lib_libmpi_la-op_create.lo CC src/mpi/coll/op/lib_libmpi_la-op_free.lo CC src/mpi/coll/op/lib_libmpi_la-op_commutative.lo CC src/mpi/coll/reduce_local/lib_libmpi_la-reduce_local.lo CC src/mpi/comm/lib_libmpi_la-comm_create.lo CC src/mpi/comm/lib_libmpi_la-comm_compare.lo CC src/mpi/comm/lib_libmpi_la-comm_create_group.lo CC src/mpi/comm/lib_libmpi_la-comm_dup.lo CC src/mpi/comm/lib_libmpi_la-comm_dup_with_info.lo CC src/mpi/comm/lib_libmpi_la-comm_free.lo CC src/mpi/comm/lib_libmpi_la-comm_get_name.lo CC src/mpi/comm/lib_libmpi_la-comm_get_info.lo CC src/mpi/comm/lib_libmpi_la-comm_set_info.lo CC src/mpi/comm/lib_libmpi_la-comm_group.lo CC src/mpi/comm/lib_libmpi_la-comm_idup.lo CC src/mpi/comm/lib_libmpi_la-comm_rank.lo CC src/mpi/comm/lib_libmpi_la-comm_size.lo CC src/mpi/comm/lib_libmpi_la-comm_remote_group.lo CC src/mpi/comm/lib_libmpi_la-comm_remote_size.lo CC src/mpi/comm/lib_libmpi_la-comm_set_name.lo CC src/mpi/comm/lib_libmpi_la-comm_split.lo CC src/mpi/comm/lib_libmpi_la-comm_test_inter.lo CC src/mpi/comm/lib_libmpi_la-intercomm_create.lo CC src/mpi/comm/lib_libmpi_la-intercomm_merge.lo CC src/mpi/comm/lib_libmpi_la-comm_split_type.lo CC src/mpi/comm/lib_libmpi_la-comm_failure_ack.lo CC src/mpi/comm/lib_libmpi_la-comm_failure_get_acked.lo CC src/mpi/comm/lib_libmpi_la-comm_revoke.lo CC src/mpi/comm/lib_libmpi_la-comm_shrink.lo CC src/mpi/comm/lib_libmpi_la-comm_agree.lo CC src/mpi/datatype/lib_libmpi_la-address.lo CC src/mpi/datatype/lib_libmpi_la-get_address.lo CC src/mpi/datatype/lib_libmpi_la-get_count.lo CC src/mpi/datatype/lib_libmpi_la-get_elements.lo CC src/mpi/datatype/lib_libmpi_la-get_elements_x.lo CC src/mpi/datatype/lib_libmpi_la-pack.lo CC src/mpi/datatype/lib_libmpi_la-pack_external.lo CC src/mpi/datatype/lib_libmpi_la-pack_external_size.lo CC src/mpi/datatype/lib_libmpi_la-pack_size.lo CC src/mpi/datatype/lib_libmpi_la-status_set_elements.lo CC src/mpi/datatype/lib_libmpi_la-status_set_elements_x.lo CC src/mpi/datatype/lib_libmpi_la-type_get_name.lo CC src/mpi/datatype/lib_libmpi_la-type_set_name.lo CC src/mpi/datatype/lib_libmpi_la-type_size.lo CC src/mpi/datatype/lib_libmpi_la-type_size_x.lo CC src/mpi/datatype/lib_libmpi_la-type_extent.lo CC src/mpi/datatype/lib_libmpi_la-type_vector.lo CC src/mpi/datatype/lib_libmpi_la-type_commit.lo CC src/mpi/datatype/lib_libmpi_la-type_indexed.lo CC src/mpi/datatype/lib_libmpi_la-type_hindexed.lo CC src/mpi/datatype/lib_libmpi_la-type_struct.lo CC src/mpi/datatype/lib_libmpi_la-type_contiguous.lo CC src/mpi/datatype/lib_libmpi_la-type_free.lo CC src/mpi/datatype/lib_libmpi_la-type_hvector.lo CC src/mpi/datatype/lib_libmpi_la-type_dup.lo CC src/mpi/datatype/lib_libmpi_la-type_get_envelope.lo CC src/mpi/datatype/lib_libmpi_la-type_get_contents.lo CC src/mpi/datatype/lib_libmpi_la-type_ub.lo CC src/mpi/datatype/lib_libmpi_la-type_lb.lo CC src/mpi/datatype/lib_libmpi_la-type_get_extent.lo CC src/mpi/datatype/lib_libmpi_la-type_get_extent_x.lo CC src/mpi/datatype/lib_libmpi_la-type_get_true_extent.lo CC src/mpi/datatype/lib_libmpi_la-type_get_true_extent_x.lo CC src/mpi/datatype/lib_libmpi_la-type_match_size.lo CC src/mpi/datatype/lib_libmpi_la-type_create_struct.lo CC src/mpi/datatype/lib_libmpi_la-type_create_hindexed.lo CC src/mpi/datatype/lib_libmpi_la-type_create_hvector.lo CC src/mpi/datatype/lib_libmpi_la-type_create_indexed_block.lo CC src/mpi/datatype/lib_libmpi_la-type_create_hindexed_block.lo CC src/mpi/datatype/lib_libmpi_la-type_create_resized.lo CC src/mpi/datatype/lib_libmpi_la-type_create_subarray.lo CC src/mpi/datatype/lib_libmpi_la-type_create_darray.lo CC src/mpi/datatype/lib_libmpi_la-unpack.lo CC src/mpi/datatype/lib_libmpi_la-unpack_external.lo CC src/mpi/errhan/lib_libmpi_la-add_error_code.lo CC src/mpi/errhan/lib_libmpi_la-add_error_class.lo CC src/mpi/errhan/lib_libmpi_la-add_error_string.lo CC src/mpi/errhan/lib_libmpi_la-comm_call_errhandler.lo CC src/mpi/errhan/lib_libmpi_la-comm_create_errhandler.lo CC src/mpi/errhan/lib_libmpi_la-comm_get_errhandler.lo CC src/mpi/errhan/lib_libmpi_la-comm_set_errhandler.lo CC src/mpi/errhan/lib_libmpi_la-errhandler_create.lo CC src/mpi/errhan/lib_libmpi_la-errhandler_free.lo CC src/mpi/errhan/lib_libmpi_la-errhandler_get.lo CC src/mpi/errhan/lib_libmpi_la-errhandler_set.lo CC src/mpi/errhan/lib_libmpi_la-error_class.lo CC src/mpi/errhan/lib_libmpi_la-error_string.lo CC src/mpi/errhan/lib_libmpi_la-file_create_errhandler.lo CC src/mpi/errhan/lib_libmpi_la-file_get_errhandler.lo CC src/mpi/errhan/lib_libmpi_la-file_set_errhandler.lo CC src/mpi/errhan/lib_libmpi_la-file_call_errhandler.lo CC src/mpi/errhan/lib_libmpi_la-win_create_errhandler.lo CC src/mpi/errhan/lib_libmpi_la-win_call_errhandler.lo CC src/mpi/errhan/lib_libmpi_la-win_get_errhandler.lo CC src/mpi/errhan/lib_libmpi_la-win_set_errhandler.lo CC src/mpi/group/lib_libmpi_la-group_compare.lo CC src/mpi/group/lib_libmpi_la-group_difference.lo CC src/mpi/group/lib_libmpi_la-group_excl.lo CC src/mpi/group/lib_libmpi_la-group_free.lo CC src/mpi/group/lib_libmpi_la-group_incl.lo CC src/mpi/group/lib_libmpi_la-group_intersection.lo CC src/mpi/group/lib_libmpi_la-group_range_excl.lo CC src/mpi/group/lib_libmpi_la-group_range_incl.lo CC src/mpi/group/lib_libmpi_la-group_rank.lo CC src/mpi/group/lib_libmpi_la-group_size.lo CC 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src/mpi/spawn/lib_libmpi_la-comm_spawn_multiple.lo CC src/mpi/spawn/lib_libmpi_la-lookup_name.lo CC src/mpi/spawn/lib_libmpi_la-publish_name.lo CC src/mpi/spawn/lib_libmpi_la-unpublish_name.lo CC src/mpi/spawn/lib_libmpi_la-open_port.lo CC src/mpi/spawn/lib_libmpi_la-close_port.lo CC src/mpi/spawn/lib_libmpi_la-comm_connect.lo CC src/mpi/spawn/lib_libmpi_la-comm_accept.lo CC src/mpi/timer/lib_libmpi_la-wtime.lo CC src/mpi/timer/lib_libmpi_la-wtick.lo CC src/mpi/topo/lib_libmpi_la-cart_coords.lo CC src/mpi/topo/lib_libmpi_la-cart_create.lo CC src/mpi/topo/lib_libmpi_la-cart_get.lo CC src/mpi/topo/lib_libmpi_la-cart_map.lo CC src/mpi/topo/lib_libmpi_la-cart_rank.lo CC src/mpi/topo/lib_libmpi_la-cart_shift.lo CC src/mpi/topo/lib_libmpi_la-cart_sub.lo CC src/mpi/topo/lib_libmpi_la-dims_create.lo CC src/mpi/topo/lib_libmpi_la-graph_get.lo CC src/mpi/topo/lib_libmpi_la-graph_map.lo CC src/mpi/topo/lib_libmpi_la-graph_nbr.lo CC src/mpi/topo/lib_libmpi_la-graphcreate.lo CC 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src/pmi/simple/lib_libmpi_la-simple_pmiutil.lo CC src/pmi/simple/lib_libmpi_la-simple_pmi.lo MOD src/binding/fortran/use_mpi/mpi_constants.mod-stamp MOD src/binding/fortran/use_mpi/mpi_sizeofs.mod-stamp CXX src/binding/cxx/initcxx.lo CC src/env/mpichversion.o CC src/env/mpivars.o MOD src/binding/fortran/use_mpi/mpi_base.mod-stamp MOD src/binding/fortran/use_mpi/mpi.mod-stamp GEN lib/libmpi.la CXXLD lib/libmpicxx.la GEN lib/libmpifort.la CCLD src/env/mpichversion CCLD src/env/mpivars make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2' Making all in examples make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/examples' CC cpi.o CCLD cpi make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/examples' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2' =============================================================================== Running make install on MPICH; this may take several minutes =============================================================================== Running Executable WITHOUT threads to time it out Executing: /usr/bin/make install stdout: /usr/bin/make install-recursive make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2' Making install in src/mpl make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/mpl' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/mpl' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/mpl' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/mpl' Making install in src/openpa make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa' Making install in src make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa/src' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa/src' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa/src' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa/src' Making install in test make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa/test' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa/test' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa/test' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa/test' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/pkgconfig' /usr/bin/install -c -m 644 openpa.pc '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/pkgconfig' make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa' Making install in src/hwloc make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc' Making install in include make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc/include' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc/include' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc/include' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc/include' Making install in hwloc make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc/hwloc' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc/hwloc' /usr/bin/make install-exec-hook make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc/hwloc' make[5]: Nothing to be done for 'install-exec-hook'. make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc/hwloc' make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc/hwloc' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc/hwloc' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc' Making install in src/mpi/romio make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/mpi/romio' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/mpi/romio' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/mpi/romio' mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include' /usr/bin/install -c -m 644 include/mpio.h include/mpiof.h '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include' make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/mpi/romio' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/mpi/romio' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/mpi/romio' Making install in src/pm/hydra make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra' Making install in mpl make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/mpl' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/mpl' make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/mpl' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/mpl' Making install in tools/topo/hwloc/hwloc make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc' Making install in include make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/include' make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/include' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/include' make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/include' Making install in hwloc make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/hwloc' make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/hwloc' /usr/bin/make install-exec-hook make[6]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/hwloc' make[6]: Nothing to be done for 'install-exec-hook'. make[6]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/hwloc' make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/hwloc' make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/hwloc' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc' make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc' make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc' Making install in . make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra' mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' /bin/bash ./libtool --mode=install /usr/bin/install -c hydra_persist hydra_nameserver hydra_pmi_proxy mpiexec.hydra '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' libtool: install: /usr/bin/install -c hydra_persist /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/hydra_persist libtool: install: /usr/bin/install -c hydra_nameserver /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/hydra_nameserver libtool: install: /usr/bin/install -c hydra_pmi_proxy /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/hydra_pmi_proxy libtool: install: /usr/bin/install -c mpiexec.hydra /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpiexec.hydra /usr/bin/make install-exec-hook make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra' if [ -x /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpiexec.hydra ] ; then \ cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin && ln -f -s mpiexec.hydra mpiexec ; \ cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin && ln -f -s mpiexec.hydra mpirun ; \ fi make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra' make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra' Making install in . make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2' mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib' /bin/bash ./libtool --mode=install /usr/bin/install -c lib/libmpi.la lib/libmpifort.la lib/libmpicxx.la '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib' libtool: install: /usr/bin/install -c lib/.libs/libmpi.so.12.1.8 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpi.so.12.1.8 libtool: install: (cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib && { ln -s -f libmpi.so.12.1.8 libmpi.so.12 || { rm -f libmpi.so.12 && ln -s libmpi.so.12.1.8 libmpi.so.12; }; }) libtool: install: (cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib && { ln -s -f libmpi.so.12.1.8 libmpi.so || { rm -f libmpi.so && ln -s libmpi.so.12.1.8 libmpi.so; }; }) libtool: install: /usr/bin/install -c lib/.libs/libmpi.lai /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpi.la libtool: install: (cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2; /bin/bash "/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/libtool" --silent --tag FC --mode=relink gfortran -Isrc/binding/fortran/use_mpi -fPIC -ffree-line-length-0 -O3 -O2 -version-info 13:8:1 -o lib/libmpifort.la -rpath /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib src/binding/fortran/mpif_h/lib_libmpifort_la-sendf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-recvf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-get_countf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-bsendf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-ssendf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-rsendf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-bufattachf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-bufdetachf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-isendf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-ibsendf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-issendf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-irsendf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-irecvf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-waitf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-testf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-request_freef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-waitanyf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-testanyf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-waitallf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-testallf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-waitsomef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-testsomef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-iprobef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-probef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-cancelf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-testcancelf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-send_initf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-bsend_initf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-ssend_initf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-rsend_initf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-recv_initf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-startf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-startallf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-sendrecvf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-sndrcvrplf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-typecontigf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_vectorf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_hvectorf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_indexedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_hindexedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_structf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_extentf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_sizef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_lbf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_ubf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_commitf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_freef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-get_elementsf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-packf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-unpackf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-pack_sizef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-barrierf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-bcastf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-gatherf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-gathervf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-scatterf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-scattervf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-allgatherf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-allgathervf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-alltoallf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-alltoallvf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-alltoallwf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-exscanf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-reducef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-op_createf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-op_freef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-allreducef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-redscatf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-scanf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-group_sizef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-group_rankf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-grouptranksf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-group_comparef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_groupf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-group_unionf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-groupinterf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-groupdifff.lo src/binding/fortran/mpif_h/lib_libmpifort_la-group_inclf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-group_exclf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-grouprinclf.lo 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src/binding/fortran/mpif_h/lib_libmpifort_la-file_deletef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_set_sizef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_preallocatef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_sizef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_groupf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_amodef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_set_infof.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_infof.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_set_viewf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_viewf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_atf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_at_allf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_atf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_at_allf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_iread_atf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_iwrite_atf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_readf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_allf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_writef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_allf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_ireadf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_iwritef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_seekf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_positionf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_byte_offsetf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_sharedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_sharedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_iread_sharedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_iwrite_sharedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_orderedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_orderedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_seek_sharedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_position_sharedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_at_all_beginf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_at_all_endf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_at_all_beginf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_at_all_endf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_all_beginf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_all_endf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_all_beginf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_all_endf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_ordered_beginf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_ordered_endf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_ordered_beginf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_ordered_endf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_type_extentf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-register_datarepf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_set_atomicityf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_atomicityf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_syncf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_iread_at_allf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_iwrite_at_allf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_iread_allf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_iwrite_allf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-initf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-initthreadf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-pcontrolf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-addressf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-getaddressf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-wtimef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-wtickf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-aint_addf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-aint_difff.lo src/binding/fortran/mpif_h/lib_libmpifort_la-keyval_createf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-dup_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-null_del_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-null_copy_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-dup_comm_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-null_comm_del_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-null_comm_copy_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-dup_win_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-null_win_del_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-null_win_copy_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-dup_type_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-null_type_del_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-null_type_copy_fnf.lo src/binding/fortran/use_mpi/lib_libmpifort_la-typef90cmplxf.lo src/binding/fortran/use_mpi/lib_libmpifort_la-typef90realf.lo src/binding/fortran/use_mpi/lib_libmpifort_la-typef90intf.lo src/binding/fortran/use_mpi/mpi.lo src/binding/fortran/use_mpi/mpi_constants.lo src/binding/fortran/use_mpi/mpi_sizeofs.lo src/binding/fortran/use_mpi/mpi_base.lo lib/libmpi.la ) libtool: install: /usr/bin/install -c lib/.libs/libmpifort.so.12.1.8T /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpifort.so.12.1.8 libtool: install: (cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib && { ln -s -f libmpifort.so.12.1.8 libmpifort.so.12 || { rm -f libmpifort.so.12 && ln -s libmpifort.so.12.1.8 libmpifort.so.12; }; }) libtool: install: (cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib && { ln -s -f libmpifort.so.12.1.8 libmpifort.so || { rm -f libmpifort.so && ln -s libmpifort.so.12.1.8 libmpifort.so; }; }) libtool: install: /usr/bin/install -c lib/.libs/libmpifort.lai /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpifort.la libtool: install: (cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2; /bin/bash "/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/libtool" --silent --tag CXX --mode=relink g++ -fstack-protector -O3 -fPIC -std=gnu++11 -O2 -version-info 13:8:1 -o lib/libmpicxx.la -rpath /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib src/binding/cxx/initcxx.lo lib/libmpi.la ) libtool: install: /usr/bin/install -c lib/.libs/libmpicxx.so.12.1.8T /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpicxx.so.12.1.8 libtool: install: (cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib && { ln -s -f libmpicxx.so.12.1.8 libmpicxx.so.12 || { rm -f libmpicxx.so.12 && ln -s libmpicxx.so.12.1.8 libmpicxx.so.12; }; }) libtool: install: (cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib && { ln -s -f libmpicxx.so.12.1.8 libmpicxx.so || { rm -f libmpicxx.so && ln -s libmpicxx.so.12.1.8 libmpicxx.so; }; }) libtool: install: /usr/bin/install -c lib/.libs/libmpicxx.lai /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpicxx.la libtool: install: /usr/bin/install -c lib/.libs/libmpi.a /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpi.a libtool: install: chmod 644 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpi.a libtool: install: ranlib /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpi.a libtool: install: /usr/bin/install -c lib/.libs/libmpifort.a /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpifort.a libtool: install: chmod 644 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpifort.a libtool: install: ranlib /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpifort.a libtool: install: /usr/bin/install -c lib/.libs/libmpicxx.a /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpicxx.a libtool: install: chmod 644 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpicxx.a libtool: install: ranlib /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpicxx.a libtool: finish: PATH="/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin:/home/dsu/Soft/PETSc/petsc-3.10.5/linux-gnu-opt/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/home/dsu/Soft/Paraview/ParaView-5.5.0/bin:/home/dsu/Soft/VisIt/visit2_13_0.linux-x86_64/bin:/home/dsu/Soft/Intel/parallel_studio_2019/bin:/home/dsu/Soft/Paraview/ParaView-5.5.0/bin:/home/dsu/Soft/VisIt/visit2_13_0.linux-x86_64/bin:/home/dsu/Soft/Intel/parallel_studio_2019/bin:/sbin" ldconfig -n /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the '-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the 'LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the 'LD_RUN_PATH' environment variable during linking - use the '-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to '/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' /bin/bash ./libtool --mode=install /usr/bin/install -c src/env/mpichversion src/env/mpivars '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' libtool: install: /usr/bin/install -c src/env/.libs/mpichversion /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpichversion libtool: install: /usr/bin/install -c src/env/.libs/mpivars /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpivars mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' /usr/bin/install -c src/env/mpicc src/env/parkill src/env/mpifort src/env/mpicxx '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' /usr/bin/make install-exec-hook make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2' for e in /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx \ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif77 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpifort ; do \ if test -e ${e} ; then \ sed -e 's|__PREFIX_TO_BE_FILLED_AT_INSTALL_TIME__|/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt|g' \ -e 's|__EXEC_PREFIX_TO_BE_FILLED_AT_INSTALL_TIME__|/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt|g' \ -e 's|__SYSCONFDIR_TO_BE_FILLED_AT_INSTALL_TIME__|/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/etc|g' \ -e 's|__INCLUDEDIR_TO_BE_FILLED_AT_INSTALL_TIME__|/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include|g' \ -e 's|__LIBDIR_TO_BE_FILLED_AT_INSTALL_TIME__|/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib|g' ${e} > ${e}.tmp ; \ /usr/bin/install -c ${e}.tmp ${e} ; \ rm -f ${e}.tmp ; \ fi ; \ done ; \ if test -e /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx ; then \ if test "mpicxx" != "mpic++" ; then \ cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin && ln -f -s mpicxx mpic++ ; \ fi ; \ fi ; \ if test -e /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpifort ; then \ if test "mpifort" != "mpif90" ; then \ cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin && ln -f -s mpifort mpif90 ; \ fi ; \ fi ; \ if test -e /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpifort -a ! -e /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif77 ; then \ if test "mpifort" != "mpif77" ; then \ cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin && ln -f -s mpifort mpif77 ; \ fi ; \ fi ; \ if test -e /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpi.so ; then \ if test "mpi" != "mpl" ; then \ cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib && ln -f -s libmpi.so libmpl.so ; \ fi ; \ if test "mpi" != "opa" ; then \ cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib && ln -f -s libmpi.so libopa.so ; \ fi ; \ if test "mpi" != "mpich" ; then \ cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib && ln -f -s libmpi.so libmpich.so ; \ fi ; \ fi ; \ if test -e /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpifort.so ; then \ if test "mpifort" != "fmpich" ; then \ cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib && ln -f -s libmpifort.so libfmpich.so ; \ fi ; \ if test "mpifort" != "mpichf90" ; then \ cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib && ln -f -s libmpifort.so libmpichf90.so ; \ fi ; \ fi ; \ if test -e /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpicxx.so ; then \ if test "mpicxx" != "mpichcxx" ; then \ cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib && ln -f -s libmpicxx.so libmpichcxx.so ; \ fi ; \ fi make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2' /usr/bin/install -c -m 644 hydra_nameserver.1 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man1/hydra_nameserver.1 /usr/bin/install -c -m 644 hydra_persist.1 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man1/hydra_persist.1 /usr/bin/install -c -m 644 hydra_pmi_proxy.1 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man1/hydra_pmi_proxy.1 /usr/bin/install -c -m 644 mpicc.1 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man1/mpicc.1 /usr/bin/install -c -m 644 mpicxx.1 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man1/mpicxx.1 /usr/bin/install -c -m 644 mpiexec.1 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man1/mpiexec.1 /usr/bin/install -c -m 644 mpif77.1 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man1/mpif77.1 /usr/bin/install -c -m 644 mpifort.1 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man1/mpifort.1 /usr/bin/install -c -m 644 Constants.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/Constants.3 /usr/bin/install -c -m 644 MPI_Abort.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Abort.3 /usr/bin/install -c -m 644 MPI_Accumulate.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Accumulate.3 /usr/bin/install -c -m 644 MPI_Add_error_class.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Add_error_class.3 /usr/bin/install -c -m 644 MPI_Add_error_code.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Add_error_code.3 /usr/bin/install -c -m 644 MPI_Add_error_string.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Add_error_string.3 /usr/bin/install -c -m 644 MPI_Address.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Address.3 /usr/bin/install -c -m 644 MPI_Aint_add.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Aint_add.3 /usr/bin/install -c -m 644 MPI_Aint_diff.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Aint_diff.3 /usr/bin/install -c -m 644 MPI_Allgather.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Allgather.3 /usr/bin/install -c -m 644 MPI_Allgatherv.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Allgatherv.3 /usr/bin/install -c -m 644 MPI_Alloc_mem.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Alloc_mem.3 /usr/bin/install -c -m 644 MPI_Allreduce.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Allreduce.3 /usr/bin/install -c -m 644 MPI_Alltoall.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Alltoall.3 /usr/bin/install -c -m 644 MPI_Alltoallv.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Alltoallv.3 /usr/bin/install -c -m 644 MPI_Alltoallw.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Alltoallw.3 /usr/bin/install -c -m 644 MPI_Attr_delete.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Attr_delete.3 /usr/bin/install -c -m 644 MPI_Attr_get.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Attr_get.3 /usr/bin/install -c -m 644 MPI_Attr_put.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Attr_put.3 /usr/bin/install -c -m 644 MPI_Barrier.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Barrier.3 /usr/bin/install -c -m 644 MPI_Bcast.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Bcast.3 /usr/bin/install -c -m 644 MPI_Bsend.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Bsend.3 /usr/bin/install -c -m 644 MPI_Bsend_init.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Bsend_init.3 /usr/bin/install -c -m 644 MPI_Buffer_attach.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Buffer_attach.3 /usr/bin/install -c -m 644 MPI_Buffer_detach.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Buffer_detach.3 /usr/bin/install -c -m 644 MPI_Cancel.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Cancel.3 /usr/bin/install -c -m 644 MPI_Cart_coords.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Cart_coords.3 /usr/bin/install -c -m 644 MPI_Cart_create.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Cart_create.3 /usr/bin/install -c -m 644 MPI_Cartdim_get.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Cartdim_get.3 /usr/bin/install -c -m 644 MPI_Cart_get.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Cart_get.3 /usr/bin/install -c -m 644 MPI_Cart_map.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Cart_map.3 /usr/bin/install -c -m 644 MPI_Cart_rank.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Cart_rank.3 /usr/bin/install -c -m 644 MPI_Cart_shift.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Cart_shift.3 /usr/bin/install -c -m 644 MPI_Cart_sub.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Cart_sub.3 /usr/bin/install -c -m 644 MPI_Close_port.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Close_port.3 /usr/bin/install -c -m 644 MPI_Comm_accept.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Comm_accept.3 /usr/bin/install -c -m 644 MPI_Comm_call_errhandler.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Comm_call_errhandler.3 /usr/bin/install -c -m 644 MPI_Comm_compare.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Comm_compare.3 /usr/bin/install -c -m 644 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/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_read_shared.3 /usr/bin/install -c -m 644 MPI_File_seek.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_seek.3 /usr/bin/install -c -m 644 MPI_File_seek_shared.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_seek_shared.3 /usr/bin/install -c -m 644 MPI_File_set_atomicity.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_set_atomicity.3 /usr/bin/install -c -m 644 MPI_File_set_errhandler.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_set_errhandler.3 /usr/bin/install -c -m 644 MPI_File_set_info.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_set_info.3 /usr/bin/install -c -m 644 MPI_File_set_size.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_set_size.3 /usr/bin/install -c -m 644 MPI_File_set_view.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_set_view.3 /usr/bin/install -c -m 644 MPI_File_sync.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_sync.3 /usr/bin/install -c -m 644 MPI_File_write.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_write.3 /usr/bin/install -c -m 644 MPI_File_write_all.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_write_all.3 /usr/bin/install -c -m 644 MPI_File_write_all_begin.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_write_all_begin.3 /usr/bin/install -c -m 644 MPI_File_write_all_end.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_write_all_end.3 /usr/bin/install -c -m 644 MPI_File_write_at.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_write_at.3 /usr/bin/install -c -m 644 MPI_File_write_at_all.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_write_at_all.3 /usr/bin/install -c -m 644 MPI_File_write_at_all_begin.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_write_at_all_begin.3 /usr/bin/install -c -m 644 MPI_File_write_at_all_end.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_write_at_all_end.3 /usr/bin/install -c -m 644 MPI_File_write_ordered.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_write_ordered.3 /usr/bin/install -c -m 644 MPI_File_write_ordered_begin.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_write_ordered_begin.3 /usr/bin/install -c -m 644 MPI_File_write_ordered_end.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_write_ordered_end.3 /usr/bin/install -c -m 644 MPI_File_write_shared.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_write_shared.3 /usr/bin/install -c -m 644 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/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Get_count.3 /usr/bin/install -c -m 644 MPI_Get_elements.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Get_elements.3 /usr/bin/install -c -m 644 MPI_Get_elements_x.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Get_elements_x.3 /usr/bin/install -c -m 644 MPI_Get_library_version.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Get_library_version.3 /usr/bin/install -c -m 644 MPI_Get_processor_name.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Get_processor_name.3 /usr/bin/install -c -m 644 MPI_Get_version.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Get_version.3 /usr/bin/install -c -m 644 MPI_Graph_create.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Graph_create.3 /usr/bin/install -c -m 644 MPI_Graphdims_get.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Graphdims_get.3 /usr/bin/install -c -m 644 MPI_Graph_get.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Graph_get.3 /usr/bin/install -c -m 644 MPI_Graph_map.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Graph_map.3 /usr/bin/install -c -m 644 MPI_Graph_neighbors.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Graph_neighbors.3 /usr/bin/install -c -m 644 MPI_Graph_neighbors_count.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Graph_neighbors_count.3 /usr/bin/install -c -m 644 MPI_Grequest_complete.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Grequest_complete.3 /usr/bin/install -c -m 644 MPI_Grequest_start.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Grequest_start.3 /usr/bin/install -c -m 644 MPI_Group_compare.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Group_compare.3 /usr/bin/install -c -m 644 MPI_Group_difference.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Group_difference.3 /usr/bin/install -c -m 644 MPI_Group_excl.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Group_excl.3 /usr/bin/install -c -m 644 MPI_Group_free.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Group_free.3 /usr/bin/install -c -m 644 MPI_Group_incl.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Group_incl.3 /usr/bin/install -c -m 644 MPI_Group_intersection.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Group_intersection.3 /usr/bin/install -c -m 644 MPI_Group_range_excl.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Group_range_excl.3 /usr/bin/install -c -m 644 MPI_Group_range_incl.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Group_range_incl.3 /usr/bin/install -c -m 644 MPI_Group_rank.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Group_rank.3 /usr/bin/install -c -m 644 MPI_Group_size.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Group_size.3 /usr/bin/install -c -m 644 MPI_Group_translate_ranks.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Group_translate_ranks.3 /usr/bin/install -c -m 644 MPI_Group_union.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Group_union.3 /usr/bin/install -c -m 644 MPI_Iallgather.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Iallgather.3 /usr/bin/install -c -m 644 MPI_Iallgatherv.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Iallgatherv.3 /usr/bin/install -c -m 644 MPI_Iallreduce.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Iallreduce.3 /usr/bin/install -c -m 644 MPI_Ialltoall.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Ialltoall.3 /usr/bin/install -c -m 644 MPI_Ialltoallv.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Ialltoallv.3 /usr/bin/install -c -m 644 MPI_Ialltoallw.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Ialltoallw.3 /usr/bin/install -c -m 644 MPI_Ibarrier.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Ibarrier.3 /usr/bin/install -c -m 644 MPI_Ibcast.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Ibcast.3 /usr/bin/install -c -m 644 MPI_Ibsend.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Ibsend.3 /usr/bin/install -c -m 644 MPI_Iexscan.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Iexscan.3 /usr/bin/install -c -m 644 MPI_Igather.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Igather.3 /usr/bin/install -c -m 644 MPI_Igatherv.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Igatherv.3 /usr/bin/install -c -m 644 MPI_Improbe.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Improbe.3 /usr/bin/install -c -m 644 MPI_Imrecv.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Imrecv.3 /usr/bin/install -c -m 644 MPI_Ineighbor_allgather.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Ineighbor_allgather.3 /usr/bin/install -c -m 644 MPI_Ineighbor_allgatherv.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Ineighbor_allgatherv.3 /usr/bin/install -c -m 644 MPI_Ineighbor_alltoall.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Ineighbor_alltoall.3 /usr/bin/install -c -m 644 MPI_Ineighbor_alltoallv.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Ineighbor_alltoallv.3 /usr/bin/install -c -m 644 MPI_Ineighbor_alltoallw.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Ineighbor_alltoallw.3 /usr/bin/install -c -m 644 MPI_Info_create.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Info_create.3 /usr/bin/install -c -m 644 MPI_Info_delete.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Info_delete.3 /usr/bin/install -c -m 644 MPI_Info_dup.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Info_dup.3 /usr/bin/install -c -m 644 MPI_Info_free.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Info_free.3 /usr/bin/install -c -m 644 MPI_Info_get.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Info_get.3 /usr/bin/install -c -m 644 MPI_Info_get_nkeys.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Info_get_nkeys.3 /usr/bin/install -c -m 644 MPI_Info_get_nthkey.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Info_get_nthkey.3 /usr/bin/install -c -m 644 MPI_Info_get_valuelen.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Info_get_valuelen.3 /usr/bin/install -c -m 644 MPI_Info_set.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Info_set.3 /usr/bin/install -c -m 644 MPI_Init.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Init.3 /usr/bin/install -c -m 644 MPI_Initialized.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Initialized.3 /usr/bin/install -c -m 644 MPI_Init_thread.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Init_thread.3 /usr/bin/install -c -m 644 MPI_Intercomm_create.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Intercomm_create.3 /usr/bin/install -c -m 644 MPI_Intercomm_merge.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Intercomm_merge.3 /usr/bin/install -c -m 644 MPI_Iprobe.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Iprobe.3 /usr/bin/install -c -m 644 MPI_Irecv.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Irecv.3 /usr/bin/install -c -m 644 MPI_Ireduce.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Ireduce.3 /usr/bin/install -c -m 644 MPI_Ireduce_scatter.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Ireduce_scatter.3 /usr/bin/install -c -m 644 MPI_Ireduce_scatter_block.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Ireduce_scatter_block.3 /usr/bin/install -c -m 644 MPI_Irsend.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Irsend.3 /usr/bin/install -c -m 644 MPI_Iscan.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Iscan.3 /usr/bin/install -c -m 644 MPI_Iscatter.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Iscatter.3 /usr/bin/install -c -m 644 MPI_Iscatterv.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Iscatterv.3 /usr/bin/install -c -m 644 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/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Neighbor_allgather.3 /usr/bin/install -c -m 644 MPI_Neighbor_allgatherv.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Neighbor_allgatherv.3 /usr/bin/install -c -m 644 MPI_Neighbor_alltoall.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Neighbor_alltoall.3 /usr/bin/install -c -m 644 MPI_Neighbor_alltoallv.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Neighbor_alltoallv.3 /usr/bin/install -c -m 644 MPI_Neighbor_alltoallw.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Neighbor_alltoallw.3 /usr/bin/install -c -m 644 MPI_Op_commute.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Op_commute.3 /usr/bin/install -c -m 644 MPI_Op_create.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Op_create.3 /usr/bin/install -c -m 644 MPI_Open_port.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Open_port.3 /usr/bin/install -c -m 644 MPI_Op_free.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Op_free.3 /usr/bin/install -c -m 644 MPI_Pack.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Pack.3 /usr/bin/install -c -m 644 MPI_Pack_external.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Pack_external.3 /usr/bin/install -c -m 644 MPI_Pack_external_size.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Pack_external_size.3 /usr/bin/install -c -m 644 MPI_Pack_size.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Pack_size.3 /usr/bin/install -c -m 644 MPI_Pcontrol.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Pcontrol.3 /usr/bin/install -c -m 644 MPI_Probe.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Probe.3 /usr/bin/install -c -m 644 MPI_Publish_name.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Publish_name.3 /usr/bin/install -c -m 644 MPI_Put.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Put.3 /usr/bin/install -c -m 644 MPI_Query_thread.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Query_thread.3 /usr/bin/install -c -m 644 MPI_Raccumulate.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Raccumulate.3 /usr/bin/install -c -m 644 MPI_Recv.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Recv.3 /usr/bin/install -c -m 644 MPI_Recv_init.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Recv_init.3 /usr/bin/install -c -m 644 MPI_Reduce.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Reduce.3 /usr/bin/install -c -m 644 MPI_Reduce_local.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Reduce_local.3 /usr/bin/install -c -m 644 MPI_Reduce_scatter.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Reduce_scatter.3 /usr/bin/install -c -m 644 MPI_Reduce_scatter_block.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Reduce_scatter_block.3 /usr/bin/install -c -m 644 MPI_Register_datarep.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Register_datarep.3 /usr/bin/install -c -m 644 MPI_Request_free.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Request_free.3 /usr/bin/install -c -m 644 MPI_Request_get_status.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Request_get_status.3 /usr/bin/install -c -m 644 MPI_Rget.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Rget.3 /usr/bin/install -c -m 644 MPI_Rget_accumulate.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Rget_accumulate.3 /usr/bin/install -c -m 644 MPI_Rput.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Rput.3 /usr/bin/install -c -m 644 MPI_Rsend.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Rsend.3 /usr/bin/install -c -m 644 MPI_Rsend_init.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Rsend_init.3 /usr/bin/install -c -m 644 MPIR_Type_commit.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPIR_Type_commit.3 /usr/bin/install -c -m 644 MPIR_Type_contiguous.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPIR_Type_contiguous.3 /usr/bin/install -c -m 644 MPIR_Type_dup.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPIR_Type_dup.3 /usr/bin/install -c -m 644 MPIR_Type_get_contents.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPIR_Type_get_contents.3 /usr/bin/install -c -m 644 MPIR_Type_indexed.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPIR_Type_indexed.3 /usr/bin/install -c -m 644 MPIR_Type_struct.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPIR_Type_struct.3 /usr/bin/install -c -m 644 MPIR_Type_vector.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPIR_Type_vector.3 /usr/bin/install -c -m 644 MPI_Scan.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Scan.3 /usr/bin/install -c -m 644 MPI_Scatter.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Scatter.3 /usr/bin/install -c -m 644 MPI_Scatterv.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Scatterv.3 /usr/bin/install -c -m 644 MPI_Send.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Send.3 /usr/bin/install -c -m 644 MPI_Send_init.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Send_init.3 /usr/bin/install -c -m 644 MPI_Sendrecv.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Sendrecv.3 /usr/bin/install -c -m 644 MPI_Sendrecv_replace.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Sendrecv_replace.3 /usr/bin/install -c -m 644 MPI_Ssend.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Ssend.3 /usr/bin/install -c -m 644 MPI_Ssend_init.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Ssend_init.3 /usr/bin/install -c -m 644 MPI_Start.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Start.3 /usr/bin/install -c -m 644 MPI_Startall.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Startall.3 /usr/bin/install -c -m 644 MPI_Status_set_cancelled.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Status_set_cancelled.3 /usr/bin/install -c -m 644 MPI_Status_set_elements.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Status_set_elements.3 /usr/bin/install -c -m 644 MPI_Status_set_elements_x.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Status_set_elements_x.3 /usr/bin/install -c -m 644 MPI_T_category_changed.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_T_category_changed.3 /usr/bin/install -c -m 644 MPI_T_category_get_categories.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_T_category_get_categories.3 /usr/bin/install -c -m 644 MPI_T_category_get_cvars.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_T_category_get_cvars.3 /usr/bin/install -c -m 644 MPI_T_category_get_index.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_T_category_get_index.3 /usr/bin/install -c -m 644 MPI_T_category_get_info.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_T_category_get_info.3 /usr/bin/install -c -m 644 MPI_T_category_get_num.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_T_category_get_num.3 /usr/bin/install -c -m 644 MPI_T_category_get_pvars.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_T_category_get_pvars.3 /usr/bin/install -c -m 644 MPI_T_cvar_get_index.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_T_cvar_get_index.3 /usr/bin/install -c -m 644 MPI_T_cvar_get_info.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_T_cvar_get_info.3 /usr/bin/install -c -m 644 MPI_T_cvar_get_num.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_T_cvar_get_num.3 /usr/bin/install -c -m 644 MPI_T_cvar_handle_alloc.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_T_cvar_handle_alloc.3 /usr/bin/install -c -m 644 MPI_T_cvar_handle_free.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_T_cvar_handle_free.3 /usr/bin/install -c -m 644 MPI_T_cvar_read.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_T_cvar_read.3 /usr/bin/install -c -m 644 MPI_T_cvar_write.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_T_cvar_write.3 /usr/bin/install -c -m 644 MPI_T_enum_get_info.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_T_enum_get_info.3 /usr/bin/install -c -m 644 MPI_T_enum_get_item.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_T_enum_get_item.3 /usr/bin/install -c -m 644 MPI_Test.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Test.3 /usr/bin/install -c -m 644 MPI_Testall.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Testall.3 /usr/bin/install -c -m 644 MPI_Testany.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Testany.3 /usr/bin/install -c -m 644 MPI_Test_cancelled.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Test_cancelled.3 /usr/bin/install -c -m 644 MPI_Testsome.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Testsome.3 /usr/bin/install -c -m 644 MPI_T_finalize.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_T_finalize.3 /usr/bin/install -c -m 644 MPI_T_init_thread.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_T_init_thread.3 /usr/bin/install -c -m 644 MPI_Topo_test.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Topo_test.3 /usr/bin/install -c -m 644 MPI_T_pvar_get_index.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_T_pvar_get_index.3 /usr/bin/install -c -m 644 MPI_T_pvar_get_info.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_T_pvar_get_info.3 /usr/bin/install -c -m 644 MPI_T_pvar_get_num.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_T_pvar_get_num.3 /usr/bin/install -c -m 644 MPI_T_pvar_handle_alloc.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_T_pvar_handle_alloc.3 /usr/bin/install -c -m 644 MPI_T_pvar_handle_free.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_T_pvar_handle_free.3 /usr/bin/install -c -m 644 MPI_T_pvar_read.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_T_pvar_read.3 /usr/bin/install -c -m 644 MPI_T_pvar_readreset.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_T_pvar_readreset.3 /usr/bin/install -c -m 644 MPI_T_pvar_reset.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_T_pvar_reset.3 /usr/bin/install -c -m 644 MPI_T_pvar_session_create.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_T_pvar_session_create.3 /usr/bin/install -c -m 644 MPI_T_pvar_session_free.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_T_pvar_session_free.3 /usr/bin/install -c -m 644 MPI_T_pvar_start.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_T_pvar_start.3 /usr/bin/install -c -m 644 MPI_T_pvar_stop.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_T_pvar_stop.3 /usr/bin/install -c -m 644 MPI_T_pvar_write.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_T_pvar_write.3 /usr/bin/install -c -m 644 MPI_Type_commit.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Type_commit.3 /usr/bin/install -c -m 644 MPI_Type_contiguous.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Type_contiguous.3 /usr/bin/install -c -m 644 MPI_Type_create_darray.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Type_create_darray.3 /usr/bin/install -c -m 644 MPI_Type_create_hindexed.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Type_create_hindexed.3 /usr/bin/install -c -m 644 MPI_Type_create_hindexed_block.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Type_create_hindexed_block.3 /usr/bin/install -c -m 644 MPI_Type_create_hvector.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Type_create_hvector.3 /usr/bin/install -c -m 644 MPI_Type_create_indexed_block.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Type_create_indexed_block.3 /usr/bin/install -c -m 644 MPI_Type_create_keyval.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Type_create_keyval.3 /usr/bin/install -c -m 644 MPI_Type_create_resized.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Type_create_resized.3 /usr/bin/install -c -m 644 MPI_Type_create_struct.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Type_create_struct.3 /usr/bin/install -c -m 644 MPI_Type_create_subarray.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Type_create_subarray.3 /usr/bin/install -c -m 644 MPI_Type_delete_attr.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Type_delete_attr.3 /usr/bin/install -c -m 644 MPI_Type_dup.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Type_dup.3 /usr/bin/install -c -m 644 MPI_Type_extent.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Type_extent.3 /usr/bin/install -c -m 644 MPI_Type_free.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Type_free.3 /usr/bin/install -c -m 644 MPI_Type_free_keyval.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Type_free_keyval.3 /usr/bin/install -c -m 644 MPI_Type_get_attr.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Type_get_attr.3 /usr/bin/install -c -m 644 MPI_Type_get_contents.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Type_get_contents.3 /usr/bin/install -c -m 644 MPI_Type_get_envelope.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Type_get_envelope.3 /usr/bin/install -c -m 644 MPI_Type_get_extent.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Type_get_extent.3 /usr/bin/install -c -m 644 MPI_Type_get_extent_x.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Type_get_extent_x.3 /usr/bin/install -c -m 644 MPI_Type_get_name.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Type_get_name.3 /usr/bin/install -c -m 644 MPI_Type_get_true_extent.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Type_get_true_extent.3 /usr/bin/install -c -m 644 MPI_Type_get_true_extent_x.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Type_get_true_extent_x.3 /usr/bin/install -c -m 644 MPI_Type_hindexed.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Type_hindexed.3 /usr/bin/install -c -m 644 MPI_Type_hvector.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Type_hvector.3 /usr/bin/install -c -m 644 MPI_Type_indexed.3 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/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPI_WIN_BASE.htm /usr/bin/install -c -m 644 MPI_Win_call_errhandler.html /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPI_Win_call_errhandler.html /usr/bin/install -c -m 644 MPI_Win_complete.html /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPI_Win_complete.html /usr/bin/install -c -m 644 MPI_Win_create_dynamic.html /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPI_Win_create_dynamic.html /usr/bin/install -c -m 644 MPI_Win_create_errhandler.html /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPI_Win_create_errhandler.html /usr/bin/install -c -m 644 MPI_WIN_CREATE_FLAVOR.htm /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPI_WIN_CREATE_FLAVOR.htm /usr/bin/install -c -m 644 MPI_Win_create.html /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPI_Win_create.html /usr/bin/install -c -m 644 MPI_Win_create_keyval.html /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPI_Win_create_keyval.html /usr/bin/install -c -m 644 MPI_Win_delete_attr.html /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPI_Win_delete_attr.html /usr/bin/install -c -m 644 MPI_Win_detach.html /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPI_Win_detach.html /usr/bin/install -c -m 644 MPI_WIN_DISP_UNIT.htm /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPI_WIN_DISP_UNIT.htm /usr/bin/install -c -m 644 MPI_WIN_DUP_FN.htm /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPI_WIN_DUP_FN.htm /usr/bin/install -c -m 644 MPI_Win_fence.html /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPI_Win_fence.html /usr/bin/install -c -m 644 MPI_WIN_FLAVOR_ALLOCATE.htm /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPI_WIN_FLAVOR_ALLOCATE.htm /usr/bin/install -c -m 644 MPI_WIN_FLAVOR_CREATE.htm /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPI_WIN_FLAVOR_CREATE.htm /usr/bin/install -c -m 644 MPI_WIN_FLAVOR_DYNAMIC.htm /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPI_WIN_FLAVOR_DYNAMIC.htm /usr/bin/install -c -m 644 MPI_WIN_FLAVOR_SHARED.htm /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPI_WIN_FLAVOR_SHARED.htm /usr/bin/install -c -m 644 MPI_Win_flush_all.html /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPI_Win_flush_all.html /usr/bin/install -c -m 644 MPI_Win_flush.html /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPI_Win_flush.html /usr/bin/install -c -m 644 MPI_Win_flush_local_all.html /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPI_Win_flush_local_all.html /usr/bin/install -c -m 644 MPI_Win_flush_local.html /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPI_Win_flush_local.html /usr/bin/install -c -m 644 MPI_Win_free.html /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPI_Win_free.html /usr/bin/install -c -m 644 MPI_Win_free_keyval.html /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPI_Win_free_keyval.html /usr/bin/install -c -m 644 MPI_Win_get_attr.html /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPI_Win_get_attr.html /usr/bin/install -c -m 644 MPI_Win_get_errhandler.html /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPI_Win_get_errhandler.html /usr/bin/install -c -m 644 MPI_Win_get_group.html /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPI_Win_get_group.html /usr/bin/install -c -m 644 MPI_Win_get_info.html /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPI_Win_get_info.html /usr/bin/install -c -m 644 MPI_Win_get_name.html /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPI_Win_get_name.html /usr/bin/install -c -m 644 MPI_Win_lock_all.html /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPI_Win_lock_all.html /usr/bin/install -c -m 644 MPI_Win_lock.html /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPI_Win_lock.html /usr/bin/install -c -m 644 MPI_WIN_MODEL.htm /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPI_WIN_MODEL.htm /usr/bin/install -c -m 644 MPI_WIN_NULL_COPY_FN.htm /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPI_WIN_NULL_COPY_FN.htm /usr/bin/install -c -m 644 MPI_WIN_NULL_DELETE_FN.htm /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPI_WIN_NULL_DELETE_FN.htm /usr/bin/install -c -m 644 MPI_WIN_NULL.htm /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPI_WIN_NULL.htm /usr/bin/install -c -m 644 MPI_Win_post.html /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPI_Win_post.html /usr/bin/install -c -m 644 MPI_WIN_SEPARATE.htm /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPI_WIN_SEPARATE.htm /usr/bin/install -c -m 644 MPI_Win_set_attr.html /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPI_Win_set_attr.html /usr/bin/install -c -m 644 MPI_Win_set_errhandler.html /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPI_Win_set_errhandler.html /usr/bin/install -c -m 644 MPI_Win_set_info.html /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPI_Win_set_info.html /usr/bin/install -c -m 644 MPI_Win_set_name.html /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPI_Win_set_name.html /usr/bin/install -c -m 644 MPI_Win_shared_query.html /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPI_Win_shared_query.html /usr/bin/install -c -m 644 MPI_WIN_SIZE.htm /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPI_WIN_SIZE.htm /usr/bin/install -c -m 644 MPI_Win_start.html /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPI_Win_start.html /usr/bin/install -c -m 644 MPI_Win_sync.html /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPI_Win_sync.html /usr/bin/install -c -m 644 MPI_Win_test.html /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPI_Win_test.html /usr/bin/install -c -m 644 MPI_WIN_UNIFIED.htm /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPI_WIN_UNIFIED.htm /usr/bin/install -c -m 644 MPI_Win_unlock_all.html /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPI_Win_unlock_all.html /usr/bin/install -c -m 644 MPI_Win_unlock.html /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPI_Win_unlock.html /usr/bin/install -c -m 644 MPI_Win_wait.html /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPI_Win_wait.html /usr/bin/install -c -m 644 MPI_Wtick.html /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPI_Wtick.html /usr/bin/install -c -m 644 MPI_Wtime.html /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPI_Wtime.html /usr/bin/install -c -m 644 MPI_WTIME_IS_GLOBAL.htm /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPI_WTIME_IS_GLOBAL.htm /usr/bin/install -c -m 644 MPIX_Comm_agree.html /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPIX_Comm_agree.html /usr/bin/install -c -m 644 MPIX_Comm_failure_ack.html /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPIX_Comm_failure_ack.html /usr/bin/install -c -m 644 MPIX_Comm_failure_get_acked.html /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPIX_Comm_failure_get_acked.html /usr/bin/install -c -m 644 MPIX_Comm_revoke.html /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPIX_Comm_revoke.html /usr/bin/install -c -m 644 MPIX_Comm_shrink.html /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPIX_Comm_shrink.html if [ ! -e /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich ] ; then mkdir -p /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich ; fi if [ -s ./doc/userguide/user.pdf ] ; then /usr/bin/install -c -m 644 ./doc/userguide/user.pdf /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/user.pdf ; fi if [ -s ./doc/installguide/install.pdf ] ; then /usr/bin/install -c -m 644 ./doc/installguide/install.pdf /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/install.pdf ; fi if [ -s ./doc/logging/logging.pdf ] ; then /usr/bin/install -c -m 644 ./doc/logging/logging.pdf /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/logging.pdf ; fi mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include' /usr/bin/install -c -m 644 src/binding/fortran/use_mpi/mpi.mod src/binding/fortran/use_mpi/mpi_sizeofs.mod src/binding/fortran/use_mpi/mpi_constants.mod src/binding/fortran/use_mpi/mpi_base.mod '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include' mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include' /usr/bin/install -c -m 644 src/binding/cxx/mpicxx.h src/binding/fortran/mpif_h/mpif.h src/include/mpi.h '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include' mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/pkgconfig' /usr/bin/install -c -m 644 src/packaging/pkgconfig/mpich.pc '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/pkgconfig' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2' Making install in examples make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/examples' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/examples' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/examples' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/examples' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2' ********Output of running make on MPICH follows ******* Configuring MPICH version 3.3.2 with '--prefix=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt' 'MAKE=/usr/bin/make' '--libdir=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib' 'CC=gcc' 'CFLAGS=-fPIC -fstack-protector -O3' 'AR=/usr/bin/ar' 'ARFLAGS=cr' 'CXX=g++' 'CXXFLAGS=-fstack-protector -O3 -fPIC -std=gnu++11' 'FFLAGS=-fPIC -ffree-line-length-0 -O3' 'FC=gfortran' 'F77=gfortran' 'FCFLAGS=-fPIC -ffree-line-length-0 -O3' '--enable-shared' '--with-device=ch3:sock' '--with-pm=hydra' '--enable-g=meminit' Running on system: Linux andromeda 4.15.0-46-generic #49~16.04.1-Ubuntu SMP Tue Feb 12 17:45:24 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking target system type... x86_64-unknown-linux-gnu checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E 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BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether /usr/bin/make supports nested variables... (cached) yes checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate Parsing Arguments for OFI Netmod checking hcoll/api/hcoll_api.h usability... no checking hcoll/api/hcoll_api.h presence... no checking for hcoll/api/hcoll_api.h... no checking for hcoll_init in -lhcoll... no configure: RUNNING PREREQ FOR ch3:sock checking for strerror... yes checking for poll... yes checking assert.h usability... yes checking assert.h presence... yes checking for assert.h... yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking netinet/tcp.h usability... yes checking netinet/tcp.h presence... yes checking for netinet/tcp.h... yes checking poll.h usability... yes checking poll.h presence... yes checking for poll.h... yes checking for stdlib.h... (cached) yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking sys/poll.h usability... yes checking sys/poll.h presence... yes checking for sys/poll.h... yes checking for sys/types.h... (cached) yes checking sys/uio.h usability... yes checking sys/uio.h presence... yes checking for sys/uio.h... yes checking for unistd.h... (cached) yes checking if struct poll is defined... yes checking if a simple program using poll() can be compiled... yes checking whether bit fields work in ip.h... yes checking for gethostname... yes checking whether gethostname needs a declaration... no checking for library containing socket... none required checking for library containing gethostbyname... none required checking whether socklen_t is defined (in sys/socket.h if present)... yes configure: ===== configuring src/mpl ===== configure: running /bin/bash ./configure --disable-option-checking '--prefix=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt' --disable-versioning --enable-embedded 'MAKE=/usr/bin/make' '--libdir=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib' 'CC=gcc' 'CFLAGS=-fPIC -fstack-protector -O3 ' 'AR=/usr/bin/ar' 'ARFLAGS=cr' 'CXX=g++' 'CXXFLAGS=-fstack-protector -O3 -fPIC -std=gnu++11 ' 'FFLAGS=-fPIC -ffree-line-length-0 -O3 ' 'FC=gfortran' 'F77=gfortran' 'FCFLAGS=-fPIC -ffree-line-length-0 -O3 ' '--enable-shared' '--with-device=ch3:sock' '--with-pm=hydra' '--enable-g=meminit' --cache-file=/dev/null --srcdir=. checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether /usr/bin/make sets $(MAKE)... yes checking whether /usr/bin/make supports nested variables... yes checking for style of include used by /usr/bin/make... GNU checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... gcc3 checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking the archiver (/usr/bin/ar) interface... ar checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether /usr/bin/make supports nested variables... (cached) yes checking for an ANSI C-conforming const... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking for variable argument list macro functionality... yes checking if C compiler supports __builtin_expect... yes checking for gcov... gcov checking whether the compiler supports __typeof(variable)... yes checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking for sys/types.h... (cached) yes checking sys/uio.h usability... yes checking sys/uio.h presence... yes checking for sys/uio.h... yes checking execinfo.h usability... yes checking execinfo.h presence... yes checking for execinfo.h... yes checking for unistd.h... (cached) yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking windows.h usability... no checking windows.h presence... no checking for windows.h... no checking sys/mman.h usability... yes checking sys/mman.h presence... yes checking for sys/mman.h... yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking valgrind.h usability... no checking valgrind.h presence... no checking for valgrind.h... no checking memcheck.h usability... no checking memcheck.h presence... no checking for memcheck.h... no checking valgrind/valgrind.h usability... yes checking valgrind/valgrind.h presence... yes checking for valgrind/valgrind.h... yes checking valgrind/memcheck.h usability... yes checking valgrind/memcheck.h presence... yes checking for valgrind/memcheck.h... yes checking helgrind.h usability... no checking helgrind.h presence... no checking for helgrind.h... no checking valgrind/helgrind.h usability... yes checking valgrind/helgrind.h presence... yes checking for valgrind/helgrind.h... yes checking drd.h usability... no checking drd.h presence... no checking for drd.h... no checking valgrind/drd.h usability... yes checking valgrind/drd.h presence... yes checking for valgrind/drd.h... yes checking whether the valgrind headers are broken or too old... no checking for clock_gettime... yes checking for clock_getres... yes checking for gethrtime... no checking for mach_absolute_time... no checking for gettimeofday... yes checking for library containing clock_gettime... none required checking for library containing clock_getres... none required checking whether struct timespec is defined in time.h... yes checking for CLOCK_REALTIME defined in time.h... yes configure: Timer type selected is CLOCK_GETTIME checking sched.h usability... yes checking sched.h presence... yes checking for sched.h... yes checking for unistd.h... (cached) yes checking sys/select.h usability... yes checking sys/select.h presence... yes checking for sys/select.h... yes checking for sched_yield... yes checking for yield... no checking for usleep... yes checking for sleep... yes checking for select... yes checking whether usleep needs a declaration... no checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for pthread_key_create in -lpthread... yes checking for pthread_yield... yes checking for pthread_key_create... yes checking for pthread_cleanup_push... no checking whether pthread_cleanup_push is available (may be a macro in pthread.h)... no configure: POSIX will be used for thread package. checking for thread local storage... _Thread_local checking for pthread_mutex_init... yes checking for pthread_mutexattr_setpshared... yes configure: POSIX will be used for interprocess mutex package. checking for mkstemp... yes checking whether mkstemp needs a declaration... no checking for fdopen... yes checking whether fdopen needs a declaration... no checking for getpid... yes checking for mmap... yes checking for munmap... yes configure: Using a memory-mapped file for shared memory checking for strdup... yes checking whether strdup needs a declaration... no checking for snprintf... yes checking whether snprintf needs a declaration... no checking for strncmp... yes checking whether strncmp needs a declaration... no checking for putenv... yes checking whether putenv needs a declaration... no checking for strerror... yes checking whether strerror needs a declaration... no checking for usleep... (cached) yes checking whether usleep needs a declaration... (cached) no checking for posix_memalign... yes checking for aligned_alloc... yes checking whether aligned_alloc needs a declaration... no checking for backtrace_symbols... yes checking whether backtrace_create_state is declared... no checking whether backtrace_print is declared... no checking for library containing gethostbyname... none required checking for library containing socket... none required checking ifaddrs.h usability... yes checking ifaddrs.h presence... yes checking for ifaddrs.h... yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking for inet_ntop... yes checking for getifaddrs... yes checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking for __attribute__((aligned))... yes checking for __attribute__((used))... yes checking for __attribute__((fallthrough))... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating localdefs config.status: creating include/mpl_timer.h config.status: creating include/config.h config.status: executing depfiles commands config.status: executing libtool commands config.status: executing prefix-config commands configure: ===== done with src/mpl configure ===== configure: sourcing src/mpl/localdefs configure: ===== configuring src/openpa ===== configure: running /bin/bash ./configure --disable-option-checking '--prefix=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt' --disable-versioning --enable-embedded --with-atomic-primitives=auto_allow_emulation 'MAKE=/usr/bin/make' '--libdir=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib' 'CC=gcc' 'CFLAGS=-fPIC -fstack-protector -O3 ' 'AR=/usr/bin/ar' 'ARFLAGS=cr' 'CXX=g++' 'CXXFLAGS=-fstack-protector -O3 -fPIC -std=gnu++11 ' 'FFLAGS=-fPIC -ffree-line-length-0 -O3 ' 'FC=gfortran' 'F77=gfortran' 'FCFLAGS=-fPIC -ffree-line-length-0 -O3 ' '--enable-shared' '--with-device=ch3:sock' '--with-pm=hydra' '--enable-g=meminit' --cache-file=/dev/null --srcdir=. checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether /usr/bin/make sets $(MAKE)... yes checking whether /usr/bin/make supports nested variables... yes checking for style of include used by /usr/bin/make... GNU checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... gcc3 checking the archiver (/usr/bin/ar) interface... ar checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether /usr/bin/make supports nested variables... (cached) yes checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking whether gcc understands -c and -o together... (cached) yes checking dependency style of gcc... (cached) gcc3 checking whether to enable assertions... yes checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking atomic.h usability... no checking atomic.h presence... no checking for atomic.h... no checking intrin.h usability... no checking intrin.h presence... no checking for intrin.h... no checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking for an ANSI C-conforming const... yes checking for pthread_create in -lpthread... yes checking for pthread_yield... yes checking if 100 threads can be run at once... yes checking size of void *... 8 checking size of int... 4 checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking if compiler rejects bogus asm statements... yes checking for support for gcc x86/x86_64 primitives... yes checking for support for gcc x86 primitives for pre-Pentium 4... yes checking for support for gcc ia64 primitives... no checking for support for gcc PowerPC atomics... no checking for support for gcc ARM atomics... no checking for support for gcc SiCortex atomics... no checking for support for gcc atomic intrinsics... yes checking for support for Windows NT atomic intrinsics... no checking for support for Sun atomic operations library... no checking whether to enable strict fairness checks... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating test/Makefile config.status: creating openpa.pc config.status: creating src/config.h config.status: executing depfiles commands config.status: executing libtool commands config.status: executing prefix-config commands configure: ===== done with src/openpa configure ===== checking for type of weak symbol alias support... pragma weak checking whether __attribute__ ((weak)) allowed... yes checking whether __attribute__ ((weak_import)) allowed... yes checking whether __attribute__((weak,alias(...))) allowed... yes checking for multiple weak symbol support... yes checking if gcc supports -fvisibility=hidden... yes checking whether to enable symbol visibility... yes (via -fvisibility=hidden) checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for X... libraries , headers ### ### Configuring hwloc core ### checking hwloc building mode... embedded configure: hwloc builddir: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc configure: hwloc srcdir: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc checking for hwloc version... 2.0.3rc2-git checking if want hwloc maintainer support... disabled (embedded mode) checking for hwloc directory prefix... src/hwloc/ checking for hwloc symbol prefix... hwloc_ checking for gcc option to accept ISO C99... none needed checking size of void *... 8 checking which OS support to include... Linux checking which CPU support to include... x86_64 checking size of unsigned long... 8 checking size of unsigned int... 4 checking for the C compiler vendor... gnu checking for __attribute__... yes checking for __attribute__(aligned)... yes checking for __attribute__(always_inline)... yes checking for __attribute__(cold)... yes checking for __attribute__(const)... yes checking for __attribute__(deprecated)... yes checking for __attribute__(format)... yes checking for __attribute__(hot)... yes checking for __attribute__(malloc)... yes checking for __attribute__(may_alias)... yes checking for __attribute__(no_instrument_function)... yes checking for __attribute__(nonnull)... yes checking for __attribute__(noreturn)... yes checking for __attribute__(packed)... yes checking for __attribute__(pure)... yes checking for __attribute__(sentinel)... yes checking for __attribute__(unused)... yes checking for __attribute__(warn_unused_result)... yes checking for __attribute__(weak_alias)... yes checking whether to enable symbol visibility... no (disabled) checking whether the C compiler rejects function calls with too many arguments... yes checking whether the C compiler rejects function calls with too few arguments... yes checking for unistd.h... (cached) yes checking dirent.h usability... yes checking dirent.h presence... yes checking for dirent.h... yes checking for strings.h... (cached) yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking for strcasecmp... yes checking whether strcasecmp is declared... yes checking whether function strcasecmp has a complete prototype... yes checking for strncasecmp... yes checking whether strncasecmp is declared... yes checking whether function strncasecmp has a complete prototype... yes checking for strftime... yes checking for setlocale... yes checking for stdint.h... (cached) yes checking sys/mman.h usability... yes checking sys/mman.h presence... yes checking for sys/mman.h... yes checking for KAFFINITY... no checking for PROCESSOR_CACHE_TYPE... no checking for CACHE_DESCRIPTOR... no checking for LOGICAL_PROCESSOR_RELATIONSHIP... no checking for RelationProcessorPackage... no checking for SYSTEM_LOGICAL_PROCESSOR_INFORMATION... no checking for GROUP_AFFINITY... no checking for PROCESSOR_RELATIONSHIP... no checking for NUMA_NODE_RELATIONSHIP... no checking for CACHE_RELATIONSHIP... no checking for PROCESSOR_GROUP_INFO... no checking for GROUP_RELATIONSHIP... no checking for SYSTEM_LOGICAL_PROCESSOR_INFORMATION_EX... no checking for PSAPI_WORKING_SET_EX_BLOCK... no checking for PSAPI_WORKING_SET_EX_INFORMATION... no checking for PROCESSOR_NUMBER... no checking for main in -lgdi32... no checking for PostQuitMessage in -luser32... no checking windows.h usability... no checking windows.h presence... no checking for windows.h... no checking sys/lgrp_user.h usability... no checking sys/lgrp_user.h presence... no checking for sys/lgrp_user.h... no checking kstat.h usability... no checking kstat.h presence... no checking for kstat.h... no checking whether fabsf is declared... yes checking for fabsf in -lm... yes checking whether modff is declared... yes checking for modff in -lm... yes checking picl.h usability... no checking picl.h presence... no checking for picl.h... no checking whether _SC_NPROCESSORS_ONLN is declared... yes checking whether _SC_NPROCESSORS_CONF is declared... yes checking whether _SC_NPROC_ONLN is declared... no checking whether _SC_NPROC_CONF is declared... no checking whether _SC_PAGESIZE is declared... yes checking whether _SC_PAGE_SIZE is declared... yes checking whether _SC_LARGE_PAGESIZE is declared... no checking mach/mach_host.h usability... no checking mach/mach_host.h presence... no checking for mach/mach_host.h... no checking mach/mach_init.h usability... no checking mach/mach_init.h presence... no checking for mach/mach_init.h... no checking for sys/param.h... (cached) yes checking for sys/sysctl.h... yes checking whether CTL_HW is declared... no checking whether HW_NCPU is declared... no checking whether strtoull is declared... yes checking for ssize_t... yes checking whether snprintf is declared... yes checking whether _strdup is declared... no checking whether _putenv is declared... no checking whether getprogname is declared... no checking whether getexecname is declared... no checking whether GetModuleFileName is declared... no checking for program_invocation_name... yes checking for __progname... yes checking for pthread_t... yes checking whether sched_getcpu is declared... yes checking whether sched_setaffinity is declared... yes checking whether function sched_setaffinity has a complete prototype... yes checking for old prototype of sched_setaffinity... no checking for working CPU_SET... yes checking for working CPU_SET_S... yes checking for working syscall with 6 parameters... yes checking for lib... no checking for bash... /bin/bash checking for ffs... yes checking whether ffs is declared... yes checking whether function ffs has a complete prototype... yes checking for ffsl... yes checking whether ffsl is declared... yes checking whether function ffsl has a complete prototype... yes checking for fls... no checking for flsl... no checking for clz... no checking for clzl... no checking for openat... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking for getpagesize... yes checking for memalign... yes checking for posix_memalign... yes checking sys/utsname.h usability... yes checking sys/utsname.h presence... yes checking for sys/utsname.h... yes checking for uname... yes checking pthread_np.h usability... no checking pthread_np.h presence... no checking for pthread_np.h... no checking whether pthread_setaffinity_np is declared... yes checking whether pthread_getaffinity_np is declared... yes checking for sched_setaffinity... yes checking for sys/cpuset.h... no checking for cpuset_setaffinity... no checking for library containing pthread_getthrds_np... no checking for cpuset_setid... no checking libudev.h usability... no checking libudev.h presence... no checking for libudev.h... no checking for PCIACCESS... no checking pciaccess.h usability... no checking pciaccess.h presence... no checking for pciaccess.h... no checking CL/cl_ext.h usability... no checking CL/cl_ext.h presence... no checking for CL/cl_ext.h... no checking cuda.h usability... no checking cuda.h presence... no checking for cuda.h... no checking cuda_runtime_api.h usability... no checking cuda_runtime_api.h presence... no checking for cuda_runtime_api.h... no checking nvml.h usability... no checking nvml.h presence... no checking for nvml.h... no checking for gethostbyname... yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... no checking X11/Xlib.h usability... yes checking X11/Xlib.h presence... yes checking for X11/Xlib.h... yes checking for XOpenDisplay in -lX11... yes checking for X11/Xutil.h... yes checking X11/keysym.h usability... yes checking X11/keysym.h presence... yes checking for X11/keysym.h... yes checking NVCtrl/NVCtrl.h usability... no checking NVCtrl/NVCtrl.h presence... no checking for NVCtrl/NVCtrl.h... no checking for LIBXML2... no checking for x86 cpuid... yes checking for pthread_mutex_lock... yes checking if plugin support is enabled... no checking components to build statically... noos xml synthetic xml_nolibxml linux linuxio x86 checking components to build as plugins... sourcing /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/mpichprereq checking whether the compiler defines __func__... yes checking whether the compiler defines __FUNC__... no checking whether the compiler sets __FUNCTION__... yes checking whether C compiler accepts option -O2... yes checking whether C compiler option -O2 works with an invalid prototype program... yes checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes checking for shared library (esp. rpath) characteristics of CC... done (results in src/env/cc_shlib.conf) checking whether Fortran 77 compiler accepts option -O2... yes checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes checking how to get verbose linking output from gfortran... -v checking for Fortran 77 libraries of gfortran... -L/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/5/../../.. -lgfortran -lm -lquadmath checking whether gfortran accepts the FLIBS found by autoconf... yes checking whether gcc links with FLIBS found by autoconf... yes checking whether Fortran 77 and C objects are compatible... yes checking for linker for Fortran main program... Use Fortran to link programs checking for Fortran 77 name mangling... lower uscore checking for libraries to link Fortran main with C stdio routines... none checking whether Fortran init will work with C... yes checking for extension for Fortran 90 programs... f90 checking whether the Fortran 90 compiler (gfortran -fPIC -ffree-line-length-0 -O3 ) works... yes checking whether the Fortran 90 compiler (gfortran -fPIC -ffree-line-length-0 -O3 ) is a cross-compiler... no checking whether Fortran 90 compiler works with Fortran 77 compiler... yes checking for shared library (esp. rpath) characteristics of F77... done (results in src/env/f77_shlib.conf) checking whether Fortran 77 accepts ! for comments... yes checking for include directory flag for Fortran... -I checking for Fortran 77 flag for library directories... -L checking whether Fortran 77 compiler processes .F files with C preprocessor... yes checking whether gfortran allows mismatched arguments... yes checking for Fortran 2008 support... no checking for shared library (esp. rpath) characteristics of FC... done (results in src/env/fc_shlib.conf) checking whether the Fortran 90 compiler (gfortran -fPIC -ffree-line-length-0 -O3 ) works... yes checking whether the Fortran 90 compiler (gfortran -fPIC -ffree-line-length-0 -O3 ) is a cross-compiler... no checking for Fortran 90 module extension... mod checking for Fortran 90 module include flag... -I checking for Fortran 90 module output directory flag... -J checking whether Fortran 90 compiler accepts option -O2... yes checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes checking whether Fortran 90 compiler processes .F90 files with C preprocessor... yes checking what libraries are needed to link Fortran90 programs with C routines that use stdio... none checking whether TRUE has been defined... no checking whether the C++ compiler g++ can build an executable... yes checking whether C++ compiler works with string... yes checking whether the compiler supports exceptions... yes checking whether the compiler recognizes bool as a built-in type... yes checking whether the compiler implements namespaces... yes checking whether available... yes checking whether the compiler implements the namespace std... yes checking whether available... no checking for GNU g++ version... 5 . 4 checking for shared library (esp. rpath) characteristics of CXX... done (results in src/env/cxx_shlib.conf) checking whether C++ compiler accepts option -O2... yes checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes checking for perl... /usr/bin/perl checking for ar... /usr/bin/ar checking for ranlib... ranlib checking for killall... killall checking whether install works... yes checking whether mkdir -p works... yes checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for bash... /bin/bash checking whether /bin/bash supports arrays... yes checking for doctext... false checking for an ANSI C-conforming const... yes checking for working volatile... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking if C compiler supports __builtin_expect... yes checking whether byte ordering is bigendian... no checking whether C compiler allows unaligned doubles... yes checking whether gcc supports __func__... yes checking whether long double is supported... yes checking whether long long is supported... yes checking for max C struct integer alignment... eight checking for max C struct floating point alignment... sixteen checking for max C struct alignment of structs with doubles... eight checking for max C struct floating point alignment with long doubles... sixteen checking if alignment of structs with doubles is based on position... no checking if alignment of structs with long long ints is based on position... no checking if double alignment breaks rules, find actual alignment... no checking for alignment restrictions on pointers... int or better checking size of char... 1 checking size of unsigned char... 1 checking size of short... 2 checking size of unsigned short... 2 checking size of int... 4 checking size of unsigned int... 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True is 1 and False is 0 checking for Fortran 90 integer kind for 8-byte integers... 8 checking for Fortran 90 integer kind for 4-byte integers... 4 checking if real*8 is supported in Fortran 90... yes checking size of bool... 1 checking complex usability... yes checking complex presence... yes checking for complex... yes checking size of Complex... 8 checking size of DoubleComplex... 16 checking size of LongDoubleComplex... 32 checking whether C compiler accepts option -Werror... yes checking whether C compiler option -Werror works with an invalid prototype program... yes checking whether routines compiled with -Werror can be linked with ones compiled without -Werror... yes checking for alignment restrictions on int64_t... no checking for alignment restrictions on int32_t... no checking for gcov... gcov checking for ANSI C header files... (cached) yes checking for stdlib.h... 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(cached) yes checking for sched_getaffinity... yes checking for bindprocessor... no checking for thread_policy_set... no checking whether cpu_set_t available... yes checking whether the CPU_SET and CPU_ZERO macros are defined... yes configure: RUNNING CONFIGURE FOR F90 CODE checking whether ln -s works... yes checking for extension for Fortran 90 programs... f90 checking for the precision and range of reals... 6 , 37 checking for the precision and range of double precision... 15 , 307 checking for the range of integer... 9 checking for available integer kinds... 2 , 1, 4 , 2, 9 , 4, 18 , 8, checking for available integer ranges... { 2 , 1 , 1 }, { 4 , 2 , 2 }, { 9 , 4 , 4 }, { 18 , 8 , 8 }, checking for unistd.h... (cached) yes checking for string.h... (cached) yes checking for stdlib.h... (cached) yes checking for sys/socket.h... (cached) yes checking for strings.h... (cached) yes checking for assert.h... (cached) yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking for snprintf... (cached) yes checking whether snprintf needs a declaration... (cached) no checking for strncasecmp... (cached) yes checking for sys/types.h... (cached) yes checking for sys/param.h... (cached) yes checking for sys/socket.h... (cached) yes checking for netinet/in.h... (cached) yes checking for netinet/tcp.h... (cached) yes checking sys/un.h usability... yes checking sys/un.h presence... yes checking for sys/un.h... yes checking for netdb.h... (cached) yes checking for library containing socket... (cached) none required checking for library containing gethostbyname... (cached) none required checking for library containing setsockopt... none required checking whether socklen_t is defined (in sys/socket.h if present)... (cached) yes checking whether struct hostent contains h_addr_list... yes checking whether __attribute__ allowed... (cached) yes checking whether __attribute__((format)) allowed... (cached) yes configure: RUNNING CONFIGURE FOR CH3 DEVICE checking for assert.h... (cached) yes checking for limits.h... (cached) yes checking for string.h... (cached) yes checking for sys/types.h... (cached) yes checking for sys/uio.h... (cached) yes checking uuid/uuid.h usability... no checking uuid/uuid.h presence... no checking for uuid/uuid.h... no checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking for ctype.h... (cached) yes checking for unistd.h... (cached) yes checking for arpa/inet.h... (cached) yes checking for sys/socket.h... (cached) yes checking for net/if.h... yes checking for pid_t... yes checking for inet_pton... yes checking for gethostname... (cached) yes checking whether gethostname needs a declaration... (cached) no checking for CFUUIDCreate... no checking for uuid_generate... no checking for time... yes checking for OpenPA atomic primitive availability... yes checking whether byte ordering is bigendian... (cached) no configure: RUNNING CONFIGURE FOR ch3:sock checking for net/if.h... yes checking for netdb.h... (cached) yes checking sys/ioctl.h usability... yes checking sys/ioctl.h presence... yes checking for sys/ioctl.h... yes checking for sys/socket.h... (cached) yes checking sys/sockio.h usability... no checking sys/sockio.h presence... no checking for sys/sockio.h... no checking for sys/types.h... (cached) yes checking for errno.h... (cached) yes checking for netinet/in.h... (cached) yes configure: RUNNING CONFIGURE FOR CH3U SOCK CODE checking for assert.h... (cached) yes checking for limits.h... (cached) yes checking for string.h... (cached) yes checking for sys/types.h... (cached) yes checking for sys/uio.h... (cached) yes checking for time.h... (cached) yes checking for ctype.h... (cached) yes checking for unistd.h... (cached) yes checking for arpa/inet.h... (cached) yes checking for sys/socket.h... (cached) yes checking for net/if.h... (cached) yes checking for pid_t... (cached) yes checking for inet_pton... (cached) yes checking for gethostname... (cached) yes checking whether gethostname needs a declaration... (cached) no checking whether we can use struct ifconf... yes configure: ===== configuring src/mpid/common/sock ===== configure: ===== configuring src/mpi/romio ===== configure: running /bin/bash ./configure --disable-option-checking '--prefix=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt' 'MAKE=/usr/bin/make' '--libdir=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib' 'CC=gcc' 'CFLAGS=-fPIC -fstack-protector -O3 -O2' 'AR=/usr/bin/ar' 'ARFLAGS=cr' 'CXX=g++' 'CXXFLAGS=-fstack-protector -O3 -fPIC -std=gnu++11 -O2' 'FFLAGS=-fPIC -ffree-line-length-0 -O3 -O2' 'FC=gfortran' 'F77=gfortran' 'FCFLAGS=-fPIC -ffree-line-length-0 -O3 -O2' '--enable-shared' '--with-device=ch3:sock' '--with-pm=hydra' '--enable-g=meminit' --cache-file=/dev/null --srcdir=. checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... mkdir -p checking for gawk... gawk checking whether /usr/bin/make sets $(MAKE)... yes checking whether /usr/bin/make supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... yes checking for style of include used by /usr/bin/make... GNU checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... gcc3 checking for grep that handles long lines and -e... /bin/grep checking if gcc supports -fvisibility=hidden... yes checking whether to enable symbol visibility... yes (via -fvisibility=hidden) checking how to run the C preprocessor... gcc -E checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking the archiver (/usr/bin/ar) interface... ar checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld -m elf_x86_64 option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64 -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether /usr/bin/make supports nested variables... (cached) yes Configuring with args dummy mt checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for architecture... LINUX ROMIO home directory is /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/mpi/romio checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64 -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64 -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for long long... yes checking size of long long... 8 checking for memalign... yes checking Fortran external names Fortran externals have a trailing underscore and are lowercase checking for inline... inline checking for size_t... yes checking for ssize_t... yes checking for off_t... yes checking how to run the C preprocessor... gcc -E checking for unistd.h... (cached) yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for sys/types.h... (cached) yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking dirent.h usability... yes checking dirent.h presence... yes checking for dirent.h... yes checking for mpix.h... no checking for u_char... yes checking for u_short... yes checking for u_int... yes checking for u_long... yes checking sys/attr.h usability... no checking sys/attr.h presence... no checking for sys/attr.h... no checking size of int... 4 checking size of void *... 8 checking for int large enough for pointers... no checking size of long long... (cached) 8 checking for extension for Fortran 90 programs... f90 checking for Fortran 90 KIND parameter for 8-byte integers... 8 checking that we can use integer*8 to declare MPI_DISPLACMENT_CURRENT... yes Overriding Array test for MPICH checking for type of weak symbol alias support... pragma weak checking whether __attribute__ ((weak)) allowed... yes checking whether __attribute__ ((weak_import)) allowed... yes checking whether __attribute__((weak,alias(...))) allowed... yes checking for multiple weak symbol support... yes checking whether struct flock compatible with MPI_Offset... yes checking for pvfs2-config... notfound checking configured file systems... testfs ufs nfs checking for library containing aio_write... -lrt checking signal.h usability... yes checking signal.h presence... yes checking for signal.h... yes checking aio.h usability... yes checking aio.h presence... yes checking for aio.h... yes checking sys/aio.h usability... no checking sys/aio.h presence... no checking for sys/aio.h... no checking whether aio routines can be used... yes checking for obsolete two-argument aio_write... no checking for obsolete two-argument aio_suspend... no checking for struct aiocb.aio_fildes... yes checking for struct aiocb.aio_whence... no checking for struct aiocb.aio_handle... no checking for struct aiocb.aio_reqprio... yes checking for struct aiocb.aio_sigevent... yes checking sys/vfs.h usability... yes checking sys/vfs.h presence... yes checking for sys/vfs.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking sys/mount.h usability... yes checking sys/mount.h presence... yes checking for sys/mount.h... yes checking sys/statvfs.h usability... yes checking sys/statvfs.h presence... yes checking for sys/statvfs.h... yes checking for statfs... yes checking whether struct statfs properly defined... yes checking for f_type member of statfs structure... yes checking for f_fstypename member of statfs structure... no checking for sys/stat.h... (cached) yes checking for sys/types.h... (cached) yes checking for unistd.h... (cached) yes checking for stat... yes checking for st_fstype member of stat structure... no checking for sys/types.h... (cached) yes checking for sys/statvfs.h... (cached) yes checking for sys/vfs.h... (cached) yes checking for statvfs... yes checking for f_basetype member of statvfs structure... no checking for blksize_t... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking whether pwrite is declared... yes checking for strerror... yes checking for doctext... false checking for strdup... yes checking whether strdup needs a declaration... no checking for lstat... yes checking whether lstat needs a declaration... no checking for readlink... yes checking whether readlink needs a declaration... no checking for fsync... yes checking whether fsync needs a declaration... no checking for ftruncate... yes checking whether ftruncate needs a declaration... no checking for lseek64... yes checking whether lseek64 needs a declaration... no checking for usleep... yes checking whether usleep needs a declaration... no setting SYSDEP_INC to checking for C/C++ restrict keyword... __restrict checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking for gcov... gcov setting CC to gcc setting F77 to gfortran setting TEST_CC to $(bindir)/mpicc setting TEST_F77 to $(bindir)/mpifort setting CFLAGS to -fPIC -fstack-protector -O3 -O2 -DFORTRANUNDERSCORE -DHAVE_ROMIOCONF_H setting USER_CFLAGS to setting USER_FFLAGS to checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating localdefs config.status: creating mpi2-other/info/Makefile config.status: creating mpi2-other/array/Makefile config.status: creating test/Makefile config.status: creating test/misc.c config.status: creating test/large_file.c config.status: creating test/runtests config.status: creating test-internal/Makefile config.status: creating util/romioinstall config.status: creating include/mpio.h config.status: creating include/mpiof.h config.status: creating mpi2-other/info/fortran/Makefile config.status: creating mpi2-other/array/fortran/Makefile config.status: creating test/fmisc.f config.status: creating test/fcoll_test.f config.status: creating test/pfcoll_test.f config.status: creating test/fperf.f config.status: creating adio/include/romioconf.h config.status: executing depfiles commands config.status: executing libtool commands config.status: executing default-1 commands configure: ===== done with src/mpi/romio configure ===== configure: sourcing src/mpi/romio/localdefs configure: ===== configuring src/pm/hydra ===== configure: running /bin/bash ./configure --disable-option-checking '--prefix=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt' 'MAKE=/usr/bin/make' '--libdir=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib' 'CC=gcc' 'CFLAGS=-fPIC -fstack-protector -O3 -O2' 'AR=/usr/bin/ar' 'ARFLAGS=cr' 'CXX=g++' 'CXXFLAGS=-fstack-protector -O3 -fPIC -std=gnu++11 -O2' 'FFLAGS=-fPIC -ffree-line-length-0 -O3 -O2' 'FC=gfortran' 'F77=gfortran' 'FCFLAGS=-fPIC -ffree-line-length-0 -O3 -O2' '--enable-shared' '--with-device=ch3:sock' '--with-pm=hydra' '--enable-g=meminit' --cache-file=/dev/null --srcdir=. checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking target system type... x86_64-unknown-linux-gnu checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking for fgrep... /bin/grep -F checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... mkdir -p checking for gawk... gawk checking whether /usr/bin/make sets $(MAKE)... yes checking for style of include used by /usr/bin/make... GNU checking whether /usr/bin/make supports nested variables... yes checking dependency style of gcc... gcc3 checking the archiver (/usr/bin/ar) interface... ar checking whether /usr/bin/make supports nested variables... (cached) yes checking for perl... /usr/bin/perl checking for doctext... false checking for an ANSI C-conforming const... yes checking for working volatile... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking size of unsigned long... 8 checking for size_t... yes checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for ld used by gcc... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld -m elf_x86_64 option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64 -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for variable argument list macro functionality... yes checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking whether the compiler defines __func__... yes checking whether the compiler defines __FUNC__... no checking whether the compiler sets __FUNCTION__... yes configure: ===== configuring mpl ===== configure: running /bin/bash ./configure --disable-option-checking '--prefix=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt' --disable-versioning --enable-embedded 'MAKE=/usr/bin/make' '--libdir=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib' 'CC=gcc' 'CFLAGS=-fPIC -fstack-protector -O3 -O2 ' 'AR=/usr/bin/ar' 'ARFLAGS=cr' 'CXX=g++' 'CXXFLAGS=-fstack-protector -O3 -fPIC -std=gnu++11 -O2' 'FFLAGS=-fPIC -ffree-line-length-0 -O3 -O2' 'FC=gfortran' 'F77=gfortran' 'FCFLAGS=-fPIC -ffree-line-length-0 -O3 -O2' '--enable-shared' '--with-device=ch3:sock' '--with-pm=hydra' '--enable-g=meminit' 'LDFLAGS=' 'LIBS=' 'CPPFLAGS= -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/mpl/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/mpl/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa/src -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa/src -D_REENTRANT -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/mpi/romio/include' 'MPLLIBNAME=mpl' --cache-file=/dev/null --srcdir=. checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... mkdir -p checking for gawk... gawk checking whether /usr/bin/make sets $(MAKE)... yes checking whether /usr/bin/make supports nested variables... yes checking for style of include used by /usr/bin/make... GNU checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... gcc3 checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking the archiver (/usr/bin/ar) interface... ar checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld -m elf_x86_64 -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64 -m elf_x86_64) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld -m elf_x86_64 -m elf_x86_64 option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64 -m elf_x86_64 -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether /usr/bin/make supports nested variables... (cached) yes checking for an ANSI C-conforming const... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking for variable argument list macro functionality... yes checking if C compiler supports __builtin_expect... yes checking for gcov... gcov checking whether the compiler supports __typeof(variable)... yes checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking for sys/types.h... (cached) yes checking sys/uio.h usability... yes checking sys/uio.h presence... yes checking for sys/uio.h... yes checking execinfo.h usability... yes checking execinfo.h presence... yes checking for execinfo.h... yes checking for unistd.h... (cached) yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking windows.h usability... no checking windows.h presence... no checking for windows.h... no checking sys/mman.h usability... yes checking sys/mman.h presence... yes checking for sys/mman.h... yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking valgrind.h usability... no checking valgrind.h presence... no checking for valgrind.h... no checking memcheck.h usability... no checking memcheck.h presence... no checking for memcheck.h... no checking valgrind/valgrind.h usability... yes checking valgrind/valgrind.h presence... yes checking for valgrind/valgrind.h... yes checking valgrind/memcheck.h usability... yes checking valgrind/memcheck.h presence... yes checking for valgrind/memcheck.h... yes checking helgrind.h usability... no checking helgrind.h presence... no checking for helgrind.h... no checking valgrind/helgrind.h usability... yes checking valgrind/helgrind.h presence... yes checking for valgrind/helgrind.h... yes checking drd.h usability... no checking drd.h presence... no checking for drd.h... no checking valgrind/drd.h usability... yes checking valgrind/drd.h presence... yes checking for valgrind/drd.h... yes checking whether the valgrind headers are broken or too old... no checking for clock_gettime... yes checking for clock_getres... yes checking for gethrtime... no checking for mach_absolute_time... no checking for gettimeofday... yes checking for library containing clock_gettime... none required checking for library containing clock_getres... none required checking whether struct timespec is defined in time.h... yes checking for CLOCK_REALTIME defined in time.h... yes configure: Timer type selected is CLOCK_GETTIME checking sched.h usability... yes checking sched.h presence... yes checking for sched.h... yes checking for unistd.h... (cached) yes checking sys/select.h usability... yes checking sys/select.h presence... yes checking for sys/select.h... yes checking for sched_yield... yes checking for yield... no checking for usleep... yes checking for sleep... yes checking for select... yes checking whether usleep needs a declaration... no checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for pthread_key_create in -lpthread... yes checking for pthread_yield... yes checking for pthread_key_create... yes checking for pthread_cleanup_push... no checking whether pthread_cleanup_push is available (may be a macro in pthread.h)... no configure: POSIX will be used for thread package. checking for thread local storage... _Thread_local checking for pthread_mutex_init... yes checking for pthread_mutexattr_setpshared... yes configure: POSIX will be used for interprocess mutex package. checking for mkstemp... yes checking whether mkstemp needs a declaration... no checking for fdopen... yes checking whether fdopen needs a declaration... no checking for getpid... yes checking for mmap... yes checking for munmap... yes configure: Using a memory-mapped file for shared memory checking for strdup... yes checking whether strdup needs a declaration... no checking for snprintf... yes checking whether snprintf needs a declaration... no checking for strncmp... yes checking whether strncmp needs a declaration... no checking for putenv... yes checking whether putenv needs a declaration... no checking for strerror... yes checking whether strerror needs a declaration... no checking for usleep... 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(cached) no checking for posix_memalign... yes checking for aligned_alloc... yes checking whether aligned_alloc needs a declaration... no checking for backtrace_symbols... yes checking whether backtrace_create_state is declared... no checking whether backtrace_print is declared... no checking for library containing gethostbyname... none required checking for library containing socket... none required checking ifaddrs.h usability... yes checking ifaddrs.h presence... yes checking for ifaddrs.h... yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking for inet_ntop... yes checking for getifaddrs... yes checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking for __attribute__((aligned))... yes checking for __attribute__((used))... yes checking for __attribute__((fallthrough))... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating localdefs config.status: creating include/mpl_timer.h config.status: creating include/config.h config.status: executing depfiles commands config.status: executing libtool commands config.status: executing prefix-config commands configure: ===== done with mpl configure ===== configure: sourcing mpl/localdefs checking for doxygen... no checking for gcov... gcov checking for ANSI C header files... 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(cached) yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking netinet/tcp.h usability... yes checking netinet/tcp.h presence... yes checking for netinet/tcp.h... yes checking sys/un.h usability... yes checking sys/un.h presence... yes checking for sys/un.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking ifaddrs.h usability... yes checking ifaddrs.h presence... yes checking for ifaddrs.h... yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking poll.h usability... yes checking poll.h presence... yes checking for poll.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking winsock2.h usability... no checking winsock2.h presence... no checking for winsock2.h... no checking windows.h usability... no checking windows.h presence... no checking for windows.h... no checking for library containing socket... none required checking for library containing gethostbyname... none required checking for library containing hstrerror... none required checking for gettimeofday... yes checking for time... yes checking for sigaction... yes checking for signal... yes checking for usleep... yes checking for alloca... no checking for unsetenv... yes checking for strsignal... yes checking for stat... yes checking for fcntl... yes checking for alarm... yes checking for isatty... yes checking for inet_ntop... yes checking for getpgid... yes checking for setsid... yes checking for killpg... yes checking for hstrerror... yes checking whether hstrerror needs a declaration... no checking whether gettimeofday needs a declaration... no checking whether getpgid needs a declaration... no checking whether killpg needs a declaration... no checking for environ in unistd.h... yes checking bootstrap server... user,ssh,rsh,fork,slurm,ll,lsf,sge,pbs,cobalt,manual,persist checking tm.h usability... no checking tm.h presence... no checking for tm.h... no checking for tm_init in -ltorque... no checking process manager... pmiserv checking user interface... mpich checking desired processor topology libraries... hwloc checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for X... libraries , headers ### ### Configuring hwloc core ### checking hwloc building mode... embedded configure: hwloc builddir: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc configure: hwloc srcdir: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc checking for hwloc version... 2.0.3rc2-git checking if want hwloc maintainer support... disabled (embedded mode) checking for hwloc directory prefix... tools/topo/hwloc/hwloc/ checking for hwloc symbol prefix... hwloc_ checking for gcc option to accept ISO C99... none needed checking size of void *... 8 checking which OS support to include... Linux checking which CPU support to include... x86_64 checking size of unsigned long... 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(cached) yes checking sys/mman.h usability... yes checking sys/mman.h presence... yes checking for sys/mman.h... yes checking for KAFFINITY... no checking for PROCESSOR_CACHE_TYPE... no checking for CACHE_DESCRIPTOR... no checking for LOGICAL_PROCESSOR_RELATIONSHIP... no checking for RelationProcessorPackage... no checking for SYSTEM_LOGICAL_PROCESSOR_INFORMATION... no checking for GROUP_AFFINITY... no checking for PROCESSOR_RELATIONSHIP... no checking for NUMA_NODE_RELATIONSHIP... no checking for CACHE_RELATIONSHIP... no checking for PROCESSOR_GROUP_INFO... no checking for GROUP_RELATIONSHIP... no checking for SYSTEM_LOGICAL_PROCESSOR_INFORMATION_EX... no checking for PSAPI_WORKING_SET_EX_BLOCK... no checking for PSAPI_WORKING_SET_EX_INFORMATION... no checking for PROCESSOR_NUMBER... no checking for main in -lgdi32... no checking for PostQuitMessage in -luser32... no checking for windows.h... (cached) no checking sys/lgrp_user.h usability... no checking sys/lgrp_user.h presence... no checking for sys/lgrp_user.h... no checking kstat.h usability... no checking kstat.h presence... no checking for kstat.h... no checking whether fabsf is declared... yes checking for fabsf in -lm... yes checking whether modff is declared... yes checking for modff in -lm... yes checking picl.h usability... no checking picl.h presence... no checking for picl.h... no checking whether _SC_NPROCESSORS_ONLN is declared... yes checking whether _SC_NPROCESSORS_CONF is declared... yes checking whether _SC_NPROC_ONLN is declared... no checking whether _SC_NPROC_CONF is declared... no checking whether _SC_PAGESIZE is declared... yes checking whether _SC_PAGE_SIZE is declared... yes checking whether _SC_LARGE_PAGESIZE is declared... no checking mach/mach_host.h usability... no checking mach/mach_host.h presence... no checking for mach/mach_host.h... no checking mach/mach_init.h usability... no checking mach/mach_init.h presence... no checking for mach/mach_init.h... no checking for sys/param.h... (cached) yes checking for sys/sysctl.h... yes checking whether CTL_HW is declared... no checking whether HW_NCPU is declared... no checking whether strtoull is declared... yes checking for ssize_t... yes checking whether snprintf is declared... yes checking whether _strdup is declared... no checking whether _putenv is declared... no checking whether getprogname is declared... no checking whether getexecname is declared... no checking whether GetModuleFileName is declared... no checking for program_invocation_name... yes checking for __progname... yes checking for pthread_t... yes checking whether sched_getcpu is declared... yes checking whether sched_setaffinity is declared... yes checking whether function sched_setaffinity has a complete prototype... yes checking for old prototype of sched_setaffinity... no checking for working CPU_SET... yes checking for working CPU_SET_S... yes checking for working syscall with 6 parameters... yes checking for lib... no checking for bash... /bin/bash checking for ffs... yes checking whether ffs is declared... yes checking whether function ffs has a complete prototype... yes checking for ffsl... yes checking whether ffsl is declared... yes checking whether function ffsl has a complete prototype... yes checking for fls... no checking for flsl... no checking for clz... no checking for clzl... no checking for openat... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking for getpagesize... yes checking for memalign... yes checking for posix_memalign... yes checking sys/utsname.h usability... yes checking sys/utsname.h presence... yes checking for sys/utsname.h... yes checking for uname... yes checking pthread_np.h usability... no checking pthread_np.h presence... no checking for pthread_np.h... no checking whether pthread_setaffinity_np is declared... yes checking whether pthread_getaffinity_np is declared... yes checking for sched_setaffinity... yes checking for sys/cpuset.h... no checking for cpuset_setaffinity... no checking for library containing pthread_getthrds_np... no checking for cpuset_setid... no checking libudev.h usability... no checking libudev.h presence... no checking for libudev.h... no checking for PCIACCESS... no checking pciaccess.h usability... no checking pciaccess.h presence... no checking for pciaccess.h... no checking CL/cl_ext.h usability... no checking CL/cl_ext.h presence... no checking for CL/cl_ext.h... no checking cuda.h usability... no checking cuda.h presence... no checking for cuda.h... no checking cuda_runtime_api.h usability... no checking cuda_runtime_api.h presence... no checking for cuda_runtime_api.h... no checking nvml.h usability... no checking nvml.h presence... no checking for nvml.h... no checking for gethostbyname... yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... no checking X11/Xlib.h usability... yes checking X11/Xlib.h presence... yes checking for X11/Xlib.h... yes checking for XOpenDisplay in -lX11... yes checking for X11/Xutil.h... yes checking X11/keysym.h usability... yes checking X11/keysym.h presence... yes checking for X11/keysym.h... yes checking NVCtrl/NVCtrl.h usability... no checking NVCtrl/NVCtrl.h presence... no checking for NVCtrl/NVCtrl.h... no checking for LIBXML2... no checking for x86 cpuid... yes checking for pthread_mutex_lock... yes checking if plugin support is enabled... no checking components to build statically... noos xml synthetic xml_nolibxml linux linuxio x86 checking components to build as plugins... checking available processor topology libraries... hwloc checking slurm/slurm.h usability... no checking slurm/slurm.h presence... no checking for slurm/slurm.h... no checking for slurm_hostlist_create in -lslurm... no checking whether POSIX compliant regcomp()/regexec()... yes checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for pthread_key_create in -lpthread... yes checking checkpointing library... blcr checking libcr.h usability... yes checking libcr.h presence... yes checking for libcr.h... yes checking for cr_init in -lcr... yes checking demux engine... poll,select,port checking for poll... yes checking for select... yes checking debugging support... meminit checking error checking... yes checking warnings... no checking profiling... yes checking for strsignal... (cached) yes checking whether strsignal needs a declaration... no checking for sigaction... (cached) yes checking for signal... (cached) yes checking for sigset... yes checking for struct sigaction and sa_handler... yes checking for gethostname... yes checking whether gethostname needs a declaration... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating tools/topo/hwloc/hwloc/Makefile config.status: creating tools/topo/hwloc/hwloc/include/Makefile config.status: creating tools/topo/hwloc/hwloc/hwloc/Makefile config.status: creating Makefile config.status: creating tools/bootstrap/src/bsci_init.c config.status: creating hydra-doxygen.cfg config.status: creating include/hydra_config.h config.status: creating tools/topo/hwloc/hwloc/include/private/autogen/config.h config.status: creating tools/topo/hwloc/hwloc/include/hwloc/autogen/config.h config.status: executing depfiles commands config.status: executing libtool commands configure: ===== done with src/pm/hydra configure ===== checking size of OPA_ptr_t... 8 checking the sizeof MPI_Offset... 8 checking whether the Fortran Offset type works with Fortran 77... yes checking whether the Fortran Offset type works with Fortran 90... yes checking for size of MPI_Status... 20 checking for BSD/POSIX style global symbol lister... BSD style,/usr/bin/nm -g -B checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for multiple __attribute__((alias)) support... yes checking the minimum alignment of Fortran common block of 1 integers... 16 checking the minimum alignment of Fortran common block of 5 integers... 16, too small! reset to 32 configure: creating ./config.lt config.lt: creating libtool checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating src/hwloc/Makefile config.status: creating src/hwloc/include/Makefile config.status: creating src/hwloc/hwloc/Makefile config.status: creating src/binding/fortran/use_mpi/mpif90model.h config.status: creating Makefile config.status: creating examples/Makefile config.status: creating test/Makefile config.status: creating test/commands/Makefile config.status: creating src/include/mpichinfo.h config.status: creating mpich-doxygen config.status: creating src/include/mpir_ext.h config.status: creating src/binding/cxx/mpicxx.h config.status: creating src/binding/fortran/mpif_h/mpif.h config.status: creating src/binding/fortran/mpif_h/setbotf.f config.status: creating src/binding/fortran/mpif_h/setbot.c config.status: creating src/binding/fortran/use_mpi/mpi_sizeofs.f90 config.status: creating src/binding/fortran/use_mpi/mpi_base.f90 config.status: creating src/binding/fortran/use_mpi/mpi_constants.f90 config.status: creating src/binding/fortran/use_mpi_f08/mpi_f08_compile_constants.f90 config.status: creating src/binding/fortran/use_mpi_f08/mpi_c_interface_types.f90 config.status: creating src/packaging/pkgconfig/mpich.pc config.status: creating src/packaging/envmods/mpich.module config.status: creating src/env/mpixxx_opts.conf config.status: creating src/env/mpicc.sh config.status: creating src/env/mpicc.bash config.status: creating src/env/mpicxx.sh config.status: creating src/env/mpicxx.bash config.status: creating src/env/mpif77.sh config.status: creating src/env/mpif77.bash config.status: creating src/env/mpifort.sh config.status: creating src/env/mpifort.bash config.status: creating src/env/parkill config.status: creating src/include/mpi.h config.status: creating doc/design/Makefile config.status: creating doc/installguide/Makefile config.status: creating doc/logging/Makefile config.status: creating doc/refman/Makefile config.status: creating doc/userguide/Makefile config.status: creating test/commands/cmdtests config.status: creating src/include/mpichconf.h config.status: creating src/hwloc/include/private/autogen/config.h config.status: creating src/hwloc/include/hwloc/autogen/config.h config.status: executing depfiles commands config.status: executing libtool commands config.status: executing default-1 commands config.status: executing default-2 commands config.status: executing default-3 commands config.status: executing default-4 commands === configuring in test/mpi (/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi) configure: running /bin/bash ./configure --disable-option-checking '--prefix=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt' 'MAKE=/usr/bin/make' '--libdir=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib' 'CC=gcc' 'CFLAGS=-fPIC -fstack-protector -O3' 'AR=/usr/bin/ar' 'ARFLAGS=cr' 'CXX=g++' 'CXXFLAGS=-fstack-protector -O3 -fPIC -std=gnu++11' 'FFLAGS=-fPIC -ffree-line-length-0 -O3' 'FC=gfortran' 'F77=gfortran' 'FCFLAGS=-fPIC -ffree-line-length-0 -O3' '--enable-shared' '--with-device=ch3:sock' '--with-pm=hydra' '--enable-g=meminit' --cache-file=/dev/null --srcdir=. RUNNING CONFIGURE FOR MPI TESTS checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... mkdir -p checking for gawk... gawk checking whether /usr/bin/make sets $(MAKE)... yes checking whether /usr/bin/make supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... yes checking whether /usr/bin/make supports nested variables... (cached) yes checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for style of include used by /usr/bin/make... GNU checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... gcc3 checking whether long double is supported... yes checking whether long long is supported... yes checking for an ANSI C-conforming const... yes checking for C/C++ restrict keyword... __restrict checking for ranlib... ranlib checking the archiver (/usr/bin/ar) interface... ar checking for grep that handles long lines and -e... /bin/grep checking for fgrep... /bin/grep -F checking how to run the C preprocessor... gcc -E checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking sys/resource.h usability... yes checking sys/resource.h presence... yes checking for sys/resource.h... yes checking for int8_t... yes checking for int16_t... yes checking for int32_t... yes checking for int64_t... yes checking for uint8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for _Bool... yes checking for float _Complex... yes checking for double _Complex... yes checking for long double _Complex... yes checking size of void *... 8 checking for library containing socket... none required checking for library containing gethostbyname... none required checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for library containing pthread_create... -lpthread checking for library containing pthread_barrier_init... none required checking for pthread_create... yes checking for pthread_yield... yes checking for pthread_barrier_init... yes checking for pthread_barrier_wait... yes checking whether struct hostent contains h_addr_list... yes checking for getrusage... yes checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking whether integer*4 is supported... yes checking whether integer*8 is supported... yes checking whether integer*16 is supported... yes checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to get verbose linking output from gfortran... -v checking for Fortran 77 libraries of gfortran... -L/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/5/../../.. -lpthread -lgfortran -lm -lquadmath checking for Fortran 77 name mangling... lower uscore checking whether gfortran allows mismatched arguments... yes checking for Fortran libraries needed for getarg... none needed checking whether Fortran 77 supports Cray-style pointer... yes checking for Fortran 77 compiler flag for Cray-style pointer... -fcray-pointer checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking for extension for Fortran 90 programs... f90 checking whether the Fortran 90 compiler (gfortran -fPIC -ffree-line-length-0 -O3 ) works... yes checking whether the Fortran 90 compiler (gfortran -fPIC -ffree-line-length-0 -O3 ) is a cross-compiler... no checking for Fortran flag needed to accept free-form source... none checking whether Fortran 90 supports Cray-style pointer... yes checking for Fortran 90 compiler flag for Cray-style pointer... -fcray-pointer checking whether gfortran supports the Fortran 2003 routines to access the commandline... yes checking for Fortran 90 module extension... mod checking for Fortran 90 module include flag... -I checking for Fortran 90 module output directory flag... -J checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking whether available... yes checking whether the compiler implements namespaces... yes checking whether the compiler implements the namespace std... yes checking whether MPI_2DOUBLE_COMPLEX is available... no checking whether MPI_2COMPLEX is available... no checking size of void *... (cached) 8 checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking size of short... 2 checking for C integer type of address size... long checking for perl... /usr/bin/perl checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating maint/testmerge config.status: creating runtests config.status: creating checktests config.status: creating Makefile config.status: creating basic/Makefile config.status: creating attr/Makefile config.status: creating attr/testlist config.status: creating util/Makefile config.status: creating coll/Makefile config.status: creating coll/testlist config.status: creating comm/Makefile config.status: creating datatype/Makefile config.status: creating datatype/testlist config.status: creating errhan/Makefile config.status: creating group/Makefile config.status: creating info/Makefile config.status: creating init/Makefile config.status: creating pt2pt/Makefile config.status: creating pt2pt/testlist config.status: creating mpi_t/Makefile config.status: creating rma/Makefile config.status: creating rma/testlist config.status: creating spawn/Makefile config.status: creating spawn/testlist config.status: creating topo/Makefile config.status: creating io/Makefile config.status: creating io/testlist config.status: creating f77/Makefile config.status: creating f77/attr/Makefile config.status: creating f77/attr/attraints.h config.status: creating f77/pt2pt/attr1aints.h config.status: creating f77/ext/add1size.h config.status: creating f77/datatype/Makefile config.status: creating f77/datatype/typeaints.h config.status: creating f77/util/Makefile config.status: creating f77/coll/Makefile config.status: creating f77/comm/Makefile config.status: creating f77/topo/Makefile config.status: creating f77/init/Makefile config.status: creating f77/rma/addsize.h config.status: creating f77/pt2pt/Makefile config.status: creating f77/info/Makefile config.status: creating f77/spawn/Makefile config.status: creating f77/spawn/testlist config.status: creating f77/spawn/type1aint.h config.status: creating f77/rma/Makefile config.status: creating f77/ext/Makefile config.status: creating f77/ext/testlist config.status: creating f77/io/Makefile config.status: creating f77/io/iooffset.h config.status: creating f77/io/iodisp.h config.status: creating f77/io/ioaint.h config.status: creating f77/io/testlist config.status: creating f77/profile/Makefile config.status: creating f90/Makefile config.status: creating f90/attr/Makefile config.status: creating f90/datatype/Makefile config.status: creating f90/f90types/Makefile config.status: creating f90/util/Makefile config.status: creating f90/coll/Makefile config.status: creating f90/comm/Makefile config.status: creating f90/topo/Makefile config.status: creating f90/init/Makefile config.status: creating f90/pt2pt/Makefile config.status: creating f90/rma/Makefile config.status: creating f90/info/Makefile config.status: creating f90/spawn/Makefile config.status: creating f90/spawn/testlist config.status: creating f90/timer/Makefile config.status: creating f90/ext/Makefile config.status: creating f90/ext/testlist config.status: creating f90/io/Makefile config.status: creating f90/io/testlist config.status: creating f90/misc/Makefile config.status: creating f90/profile/Makefile config.status: creating f08/Makefile config.status: creating f08/attr/Makefile config.status: creating f08/datatype/Makefile config.status: creating f08/util/Makefile config.status: creating f08/coll/Makefile config.status: creating f08/comm/Makefile config.status: creating f08/pt2pt/Makefile config.status: creating f08/rma/Makefile config.status: creating f08/subarray/Makefile config.status: creating f08/topo/Makefile config.status: creating f08/io/Makefile config.status: creating f08/io/testlist config.status: creating f08/init/Makefile config.status: creating f08/info/Makefile config.status: creating f08/spawn/Makefile config.status: creating f08/spawn/testlist config.status: creating f08/timer/Makefile config.status: creating f08/ext/Makefile config.status: creating f08/misc/Makefile config.status: creating f08/profile/Makefile config.status: creating cxx/Makefile config.status: creating cxx/util/Makefile config.status: creating cxx/attr/Makefile config.status: creating cxx/attr/testlist config.status: creating cxx/pt2pt/Makefile config.status: creating cxx/comm/Makefile config.status: creating cxx/coll/Makefile config.status: creating cxx/errhan/Makefile config.status: creating cxx/info/Makefile config.status: creating cxx/datatype/Makefile config.status: creating cxx/datatype/testlist config.status: creating cxx/io/Makefile config.status: creating cxx/init/Makefile config.status: creating cxx/rma/Makefile config.status: creating cxx/spawn/Makefile config.status: creating cxx/spawn/testlist config.status: creating cxx/topo/Makefile config.status: creating threads/Makefile config.status: creating threads/pt2pt/Makefile config.status: creating threads/util/Makefile config.status: creating threads/comm/Makefile config.status: creating threads/comm/testlist config.status: creating threads/init/Makefile config.status: creating threads/mpi_t/Makefile config.status: creating threads/spawn/Makefile config.status: creating threads/rma/Makefile config.status: creating threads/coll/Makefile config.status: creating threads/coll/testlist config.status: creating errors/Makefile config.status: creating errors/attr/Makefile config.status: creating errors/basic/Makefile config.status: creating errors/coll/Makefile config.status: creating errors/comm/Makefile config.status: creating errors/datatype/Makefile config.status: creating errors/faults/Makefile config.status: creating errors/group/Makefile config.status: creating errors/pt2pt/Makefile config.status: creating errors/rma/Makefile config.status: creating errors/spawn/Makefile config.status: creating errors/spawn/testlist config.status: creating errors/topo/Makefile config.status: creating errors/io/Makefile config.status: creating errors/cxx/Makefile config.status: creating errors/cxx/errhan/Makefile config.status: creating errors/cxx/io/Makefile config.status: creating errors/f77/Makefile config.status: creating errors/f77/io/Makefile config.status: creating errors/f77/io/addsize.h config.status: creating errors/f77/io/iooffset.h config.status: creating errors/f90/Makefile config.status: creating errors/f90/io/Makefile config.status: creating errors/f08/Makefile config.status: creating errors/f08/io/Makefile config.status: creating ckpoint/Makefile config.status: creating ft/Makefile config.status: creating manual/Makefile config.status: creating manual/manyconnect config.status: creating manual/mpi_t/Makefile config.status: creating perf/Makefile config.status: creating testlist config.status: creating cxx/testlist config.status: creating cxx/topo/testlist config.status: creating f77/testlist config.status: creating f90/testlist config.status: creating f08/testlist config.status: creating threads/testlist config.status: creating errors/testlist config.status: creating errors/cxx/testlist config.status: creating errors/f77/testlist config.status: creating errors/f90/testlist config.status: creating impls/testlist config.status: creating f77/rma/testlist config.status: creating f90/rma/testlist config.status: creating f08/rma/testlist config.status: creating impls/Makefile config.status: creating impls/hydra/Makefile config.status: creating impls/hydra/proc_binding.sh config.status: creating impls/mpich/Makefile config.status: creating impls/mpich/testlist config.status: creating impls/mpich/mpi_t/Makefile config.status: creating include/mpitestconf.h config.status: executing depfiles commands config.status: executing default-1 commands config.status: executing default-2 commands config.status: executing default-3 commands config.status: executing default-4 commands === configuring in dtpools (/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/dtpools) configure: running /bin/bash ./configure --disable-option-checking '--prefix=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt' 'MAKE=/usr/bin/make' '--libdir=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib' 'CC=gcc' 'CFLAGS=-fPIC -fstack-protector -O3' 'AR=/usr/bin/ar' 'ARFLAGS=cr' 'CXX=g++' 'CXXFLAGS=-fstack-protector -O3 -fPIC -std=gnu++11' 'FFLAGS=-fPIC -ffree-line-length-0 -O3' 'FC=gfortran' 'F77=gfortran' 'FCFLAGS=-fPIC -ffree-line-length-0 -O3' '--enable-shared' '--with-device=ch3:sock' '--with-pm=hydra' '--enable-g=meminit' 'master_top_builddir=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2' 'master_top_srcdir=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2' 'FROM_MPICH=yes' 'MPICH_THREAD_LEVEL=MPI_THREAD_MULTIPLE' 'MPICH_ENABLE_F77=yes' 'MPICH_ENABLE_FC=yes' 'MPICH_ENABLE_CXX=yes' 'MPI_NO_SPAWN=' 'MPI_NO_RMA=' 'WRAPPER_CFLAGS=-fPIC -fstack-protector -O3' 'WRAPPER_CPPFLAGS=' 'WRAPPER_LDFLAGS=' 'WRAPPER_LIBS=-lm -lbacktrace -lpthread -lrt ' 'WRAPPER_FFLAGS=-fPIC -ffree-line-length-0 -O3' 'WRAPPER_FCFLAGS=-fPIC -ffree-line-length-0 -O3' 'WRAPPER_CXXFLAGS=-fstack-protector -O3 -fPIC -std=gnu++11' 'LDFLAGS=' 'LIBS=' 'CPPFLAGS= -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/mpl/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/mpl/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa/src -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa/src -D_REENTRANT -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/mpi/romio/include' 'MPI_SIZEOF_AINT=8' 'MPI_SIZEOF_OFFSET=8' --cache-file=/dev/null --srcdir=. checking for gawk... gawk checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking how to run the C preprocessor... gcc -E checking for a BSD-compatible install... /usr/bin/install -c checking whether ln -s works... yes checking whether /usr/bin/make sets $(MAKE)... yes checking whether build environment is sane... yes checking for a thread-safe mkdir -p... mkdir -p checking for style of include used by /usr/bin/make... GNU checking whether /usr/bin/make supports nested variables... yes checking dependency style of gcc... gcc3 checking whether /usr/bin/make supports nested variables... (cached) yes checking whether to enable maintainer-specific portions of Makefiles... yes checking the archiver (/usr/bin/ar) interface... ar checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld -m elf_x86_64 option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64 -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for stdint.h... (cached) yes checking for sys/types.h... (cached) yes checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes checking for memset... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating include/Makefile config.status: creating src/Makefile config.status: creating dtpoolsconf.h config.status: executing depfiles commands config.status: executing libtool commands Configuration completed../configure: line 12600: printf %s\n: command not found ./configure: line 12601: printf %s\n: command not found configure: WARNING: Structures containing long doubles may be aligned differently from structures with floats or longs. MPICH does not handle this case automatically and you should avoid assumed extents for structures containing float types. configure: WARNING: File locks may not work with NFS. See the Installation and users manual for instructions on testing and if necessary fixing this ./configure: line 12535: printf %s\n: command not found ./configure: line 12536: printf %s\n: command not found configure: WARNING: "-fvisibility=hidden" has been added to the hwloc CFLAGS configure: WARNING: The ch3:sock device did not set the maximum size of an error string, 512 being used. config.status: WARNING: 'src/packaging/envmods/mpich.module.in' seems to ignore the --datarootdir setting Making clean in src/mpl make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/mpl' rm -f strsep test -z "" || rm -f rm -rf .libs _libs rm -rf src/bt/.libs src/bt/_libs rm -rf src/dbg/.libs src/dbg/_libs rm -rf src/env/.libs src/env/_libs rm -rf src/mem/.libs src/mem/_libs rm -rf src/msg/.libs src/msg/_libs rm -rf src/shm/.libs src/shm/_libs rm -rf src/sock/.libs src/sock/_libs rm -rf src/str/.libs src/str/_libs rm -rf src/thread/.libs src/thread/_libs rm -rf src/timer/.libs src/timer/_libs test -z "libmpl.la" || rm -f libmpl.la rm -f ./so_locations rm -f *.o rm -f src/bt/*.o rm -f src/bt/*.lo rm -f src/dbg/*.o rm -f src/dbg/*.lo rm -f src/env/*.o rm -f src/env/*.lo rm -f src/mem/*.o rm -f src/mem/*.lo rm -f src/msg/*.o rm -f src/msg/*.lo rm -f src/shm/*.o rm -f src/shm/*.lo rm -f src/sock/*.o rm -f src/sock/*.lo rm -f src/str/*.o rm -f src/str/*.lo rm -f src/thread/*.o rm -f src/thread/*.lo rm -f src/timer/*.o rm -f src/timer/*.lo rm -f test/*.o test -z "strsep.log" || rm -f strsep.log test -z "strsep.trs" || rm -f strsep.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/mpl' Making clean in src/openpa make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa' Making clean in src make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa/src' rm -rf .libs _libs test -z "libopa.la" || rm -f libopa.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa/src' Making clean in test make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa/test' rm -f sanity test_primitives test_barriers test_queue rm -rf .libs _libs rm -f *.o test -z "sanity.log test_primitives.log test_barriers.log test_queue.log" || rm -f sanity.log test_primitives.log test_barriers.log test_queue.log test -z "sanity.trs test_primitives.trs test_barriers.trs test_queue.trs" || rm -f sanity.trs test_primitives.trs test_barriers.trs test_queue.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa/test' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa' rm -rf .libs _libs rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa' Making clean in src/hwloc make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc' Making clean in include make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc/include' rm -rf .libs _libs rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc/include' Making clean in hwloc make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc/hwloc' test -z "" || rm -f test -z "" || rm -f rm -rf .libs _libs test -z "libhwloc_embedded.la" || rm -f libhwloc_embedded.la rm -f ./so_locations test -z " " || rm -f rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc/hwloc' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc' rm -rf .libs _libs rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc' Making clean in src/mpi/romio make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/mpi/romio' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/mpi/romio' test -z "" || rm -f rm -rf .libs _libs rm -rf adio/ad_gpfs/.libs adio/ad_gpfs/_libs rm -rf adio/ad_gpfs/bg/.libs adio/ad_gpfs/bg/_libs rm -rf adio/ad_gpfs/pe/.libs adio/ad_gpfs/pe/_libs rm -rf adio/ad_ime/.libs adio/ad_ime/_libs rm -rf adio/ad_lustre/.libs adio/ad_lustre/_libs rm -rf adio/ad_nfs/.libs adio/ad_nfs/_libs rm -rf adio/ad_panfs/.libs adio/ad_panfs/_libs rm -rf adio/ad_pvfs2/.libs adio/ad_pvfs2/_libs rm -rf adio/ad_testfs/.libs adio/ad_testfs/_libs rm -rf adio/ad_ufs/.libs adio/ad_ufs/_libs rm -rf adio/ad_xfs/.libs adio/ad_xfs/_libs rm -rf adio/common/.libs adio/common/_libs rm -rf mpi-io/.libs mpi-io/_libs rm -rf mpi-io/fortran/.libs mpi-io/fortran/_libs rm -rf mpi-io/glue/.libs mpi-io/glue/_libs rm -rf mpi-io/glue/default/.libs mpi-io/glue/default/_libs rm -rf mpi-io/glue/mpich/.libs mpi-io/glue/mpich/_libs test -z "libromio.la " || rm -f libromio.la rm -f ./so_locations rm -f *.o rm -f adio/ad_gpfs/*.o rm -f adio/ad_gpfs/*.lo rm -f adio/ad_gpfs/bg/*.o rm -f adio/ad_gpfs/bg/*.lo rm -f adio/ad_gpfs/pe/*.o rm -f adio/ad_gpfs/pe/*.lo rm -f adio/ad_ime/*.o rm -f adio/ad_ime/*.lo rm -f adio/ad_lustre/*.o rm -f adio/ad_lustre/*.lo rm -f adio/ad_nfs/*.o rm -f adio/ad_nfs/*.lo rm -f adio/ad_panfs/*.o rm -f adio/ad_panfs/*.lo rm -f adio/ad_pvfs2/*.o rm -f adio/ad_pvfs2/*.lo rm -f adio/ad_testfs/*.o rm -f adio/ad_testfs/*.lo rm -f adio/ad_ufs/*.o rm -f adio/ad_ufs/*.lo rm -f adio/ad_xfs/*.o rm -f adio/ad_xfs/*.lo rm -f adio/common/*.o rm -f adio/common/*.lo rm -f mpi-io/*.o rm -f mpi-io/*.lo rm -f mpi-io/fortran/*.o rm -f mpi-io/fortran/*.lo rm -f mpi-io/glue/*.o rm -f mpi-io/glue/*.lo rm -f mpi-io/glue/default/*.o rm -f mpi-io/glue/default/*.lo rm -f mpi-io/glue/mpich/*.o rm -f mpi-io/glue/mpich/*.lo rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/mpi/romio' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/mpi/romio' Making clean in src/pm/hydra make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra' Making clean in mpl make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/mpl' rm -f strsep test -z "" || rm -f rm -rf .libs _libs rm -rf src/bt/.libs src/bt/_libs rm -rf src/dbg/.libs src/dbg/_libs rm -rf src/env/.libs src/env/_libs rm -rf src/mem/.libs src/mem/_libs rm -rf src/msg/.libs src/msg/_libs rm -rf src/shm/.libs src/shm/_libs rm -rf src/sock/.libs src/sock/_libs rm -rf src/str/.libs src/str/_libs rm -rf src/thread/.libs src/thread/_libs rm -rf src/timer/.libs src/timer/_libs test -z "libmpl.la" || rm -f libmpl.la rm -f ./so_locations rm -f *.o rm -f src/bt/*.o rm -f src/bt/*.lo rm -f src/dbg/*.o rm -f src/dbg/*.lo rm -f src/env/*.o rm -f src/env/*.lo rm -f src/mem/*.o rm -f src/mem/*.lo rm -f src/msg/*.o rm -f src/msg/*.lo rm -f src/shm/*.o rm -f src/shm/*.lo rm -f src/sock/*.o rm -f src/sock/*.lo rm -f src/str/*.o rm -f src/str/*.lo rm -f src/thread/*.o rm -f src/thread/*.lo rm -f src/timer/*.o rm -f src/timer/*.lo rm -f test/*.o test -z "strsep.log" || rm -f strsep.log test -z "strsep.trs" || rm -f strsep.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/mpl' Making clean in tools/topo/hwloc/hwloc make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc' Making clean in include make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/include' rm -rf .libs _libs rm -f *.lo make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/include' Making clean in hwloc make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/hwloc' test -z "" || rm -f test -z "" || rm -f rm -rf .libs _libs test -z "libhwloc_embedded.la" || rm -f libhwloc_embedded.la rm -f ./so_locations test -z " " || rm -f rm -f *.o rm -f *.lo make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/hwloc' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc' rm -rf .libs _libs rm -f *.lo make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc' Making clean in . make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra' rm -f hydra_persist hydra_nameserver hydra_pmi_proxy mpiexec.hydra rm -rf .libs _libs rm -rf pm/pmiserv/.libs pm/pmiserv/_libs rm -rf tools/bootstrap/external/.libs tools/bootstrap/external/_libs rm -rf tools/bootstrap/persist/.libs tools/bootstrap/persist/_libs rm -rf tools/bootstrap/src/.libs tools/bootstrap/src/_libs rm -rf tools/bootstrap/utils/.libs tools/bootstrap/utils/_libs rm -rf tools/ckpoint/.libs tools/ckpoint/_libs rm -rf tools/ckpoint/blcr/.libs tools/ckpoint/blcr/_libs rm -rf tools/debugger/.libs tools/debugger/_libs rm -rf tools/demux/.libs tools/demux/_libs rm -rf tools/topo/.libs tools/topo/_libs rm -rf tools/topo/hwloc/.libs tools/topo/hwloc/_libs rm -rf ui/utils/.libs ui/utils/_libs rm -rf utils/alloc/.libs utils/alloc/_libs rm -rf utils/args/.libs utils/args/_libs rm -rf utils/dbg/.libs utils/dbg/_libs rm -rf utils/env/.libs utils/env/_libs rm -rf utils/launch/.libs utils/launch/_libs rm -rf utils/others/.libs utils/others/_libs rm -rf utils/signals/.libs utils/signals/_libs rm -rf utils/sock/.libs utils/sock/_libs rm -rf utils/string/.libs utils/string/_libs test -z "libhydra.la libpm.la" || rm -f libhydra.la libpm.la rm -f ./so_locations rm -f *.o rm -f pm/pmiserv/*.o rm -f pm/pmiserv/*.lo rm -f tools/bootstrap/external/*.o rm -f tools/bootstrap/external/*.lo rm -f tools/bootstrap/persist/*.o rm -f tools/bootstrap/persist/*.lo rm -f tools/bootstrap/src/*.o rm -f tools/bootstrap/src/*.lo rm -f tools/bootstrap/utils/*.o rm -f tools/bootstrap/utils/*.lo rm -f tools/ckpoint/*.o rm -f tools/ckpoint/*.lo rm -f tools/ckpoint/blcr/*.o rm -f tools/ckpoint/blcr/*.lo rm -f tools/debugger/*.o rm -f tools/debugger/*.lo rm -f tools/demux/*.o rm -f tools/demux/*.lo rm -f tools/nameserver/*.o rm -f tools/topo/*.o rm -f tools/topo/*.lo rm -f tools/topo/hwloc/*.o rm -f tools/topo/hwloc/*.lo rm -f ui/mpich/*.o rm -f ui/utils/*.o rm -f ui/utils/*.lo rm -f utils/alloc/*.o rm -f utils/alloc/*.lo rm -f utils/args/*.o rm -f utils/args/*.lo rm -f utils/dbg/*.o rm -f utils/dbg/*.lo rm -f utils/env/*.o rm -f utils/env/*.lo rm -f utils/launch/*.o rm -f utils/launch/*.lo rm -f utils/others/*.o rm -f utils/others/*.lo rm -f utils/signals/*.o rm -f utils/signals/*.lo rm -f utils/sock/*.o rm -f utils/sock/*.lo rm -f utils/string/*.o rm -f utils/string/*.lo rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra' Making clean in . make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2' rm -f src/env/mpichversion src/env/mpivars test -z "src/binding/fortran/use_mpi/mpi.mod-stamp src/binding/fortran/use_mpi/mpi.mod src/binding/fortran/use_mpi/mpi.lo src/binding/fortran/use_mpi/mpi-tmp src/binding/fortran/use_mpi/mpi_constants.mod-stamp src/binding/fortran/use_mpi/mpi_constants.mod src/binding/fortran/use_mpi/mpi_constants.lo src/binding/fortran/use_mpi/mpi_constants-tmp src/binding/fortran/use_mpi/mpi_sizeofs.mod-stamp src/binding/fortran/use_mpi/mpi_sizeofs.mod src/binding/fortran/use_mpi/mpi_sizeofs.lo src/binding/fortran/use_mpi/mpi_sizeofs-tmp src/binding/fortran/use_mpi/mpi_base.mod-stamp src/binding/fortran/use_mpi/mpi_base.mod src/binding/fortran/use_mpi/mpi_base.lo src/binding/fortran/use_mpi/mpi_base-tmp src/binding/fortran/use_mpi/mpifnoext.h src/binding/fortran/use_mpi/mpi.mod src/binding/fortran/use_mpi/mpi_sizeofs.mod src/binding/fortran/use_mpi/mpi_constants.mod src/binding/fortran/use_mpi/mpi_base.mod " || rm -f src/binding/fortran/use_mpi/mpi.mod-stamp src/binding/fortran/use_mpi/mpi.mod src/binding/fortran/use_mpi/mpi.lo src/binding/fortran/use_mpi/mpi-tmp src/binding/fortran/use_mpi/mpi_constants.mod-stamp src/binding/fortran/use_mpi/mpi_constants.mod src/binding/fortran/use_mpi/mpi_constants.lo src/binding/fortran/use_mpi/mpi_constants-tmp src/binding/fortran/use_mpi/mpi_sizeofs.mod-stamp src/binding/fortran/use_mpi/mpi_sizeofs.mod src/binding/fortran/use_mpi/mpi_sizeofs.lo src/binding/fortran/use_mpi/mpi_sizeofs-tmp src/binding/fortran/use_mpi/mpi_base.mod-stamp src/binding/fortran/use_mpi/mpi_base.mod src/binding/fortran/use_mpi/mpi_base.lo src/binding/fortran/use_mpi/mpi_base-tmp src/binding/fortran/use_mpi/mpifnoext.h src/binding/fortran/use_mpi/mpi.mod src/binding/fortran/use_mpi/mpi_sizeofs.mod src/binding/fortran/use_mpi/mpi_constants.mod src/binding/fortran/use_mpi/mpi_base.mod test -z " lib/libmpi.la lib/libmpifort.la lib/libmpicxx.la" || rm -f lib/libmpi.la lib/libmpifort.la lib/libmpicxx.la rm -f lib/so_locations rm -rf .libs _libs rm -rf lib/.libs lib/_libs rm -rf src/binding/cxx/.libs src/binding/cxx/_libs rm -rf src/binding/fortran/mpif_h/.libs src/binding/fortran/mpif_h/_libs rm -rf src/binding/fortran/use_mpi/.libs src/binding/fortran/use_mpi/_libs rm -rf src/binding/fortran/use_mpi_f08/.libs src/binding/fortran/use_mpi_f08/_libs rm -rf src/binding/fortran/use_mpi_f08/wrappers_c/.libs src/binding/fortran/use_mpi_f08/wrappers_c/_libs rm -rf src/binding/fortran/use_mpi_f08/wrappers_f/.libs src/binding/fortran/use_mpi_f08/wrappers_f/_libs rm -rf src/binding/fortran/use_mpi_f08/wrappers_f/profiling/.libs src/binding/fortran/use_mpi_f08/wrappers_f/profiling/_libs rm -rf src/env/.libs src/env/_libs rm -rf src/glue/romio/.libs src/glue/romio/_libs rm -rf src/mpi/attr/.libs src/mpi/attr/_libs rm -rf src/mpi/coll/.libs src/mpi/coll/_libs rm -rf src/mpi/coll/algorithms/recexchalgo/.libs src/mpi/coll/algorithms/recexchalgo/_libs rm -rf src/mpi/coll/algorithms/stubalgo/.libs src/mpi/coll/algorithms/stubalgo/_libs rm -rf src/mpi/coll/algorithms/treealgo/.libs src/mpi/coll/algorithms/treealgo/_libs rm -rf src/mpi/coll/allgather/.libs src/mpi/coll/allgather/_libs rm -rf src/mpi/coll/allgatherv/.libs src/mpi/coll/allgatherv/_libs rm -rf src/mpi/coll/allreduce/.libs src/mpi/coll/allreduce/_libs rm -rf src/mpi/coll/allreduce_group/.libs src/mpi/coll/allreduce_group/_libs rm -rf src/mpi/coll/alltoall/.libs src/mpi/coll/alltoall/_libs rm -rf src/mpi/coll/alltoallv/.libs src/mpi/coll/alltoallv/_libs rm -rf src/mpi/coll/alltoallw/.libs src/mpi/coll/alltoallw/_libs rm -rf src/mpi/coll/barrier/.libs src/mpi/coll/barrier/_libs rm -rf src/mpi/coll/bcast/.libs src/mpi/coll/bcast/_libs rm -rf src/mpi/coll/exscan/.libs src/mpi/coll/exscan/_libs rm -rf src/mpi/coll/gather/.libs src/mpi/coll/gather/_libs rm -rf src/mpi/coll/gatherv/.libs src/mpi/coll/gatherv/_libs rm -rf src/mpi/coll/iallgather/.libs src/mpi/coll/iallgather/_libs rm -rf src/mpi/coll/iallgatherv/.libs src/mpi/coll/iallgatherv/_libs rm -rf src/mpi/coll/iallreduce/.libs src/mpi/coll/iallreduce/_libs rm -rf src/mpi/coll/ialltoall/.libs src/mpi/coll/ialltoall/_libs rm -rf src/mpi/coll/ialltoallv/.libs src/mpi/coll/ialltoallv/_libs rm -rf src/mpi/coll/ialltoallw/.libs src/mpi/coll/ialltoallw/_libs rm -rf src/mpi/coll/ibarrier/.libs src/mpi/coll/ibarrier/_libs rm -rf src/mpi/coll/ibcast/.libs src/mpi/coll/ibcast/_libs rm -rf src/mpi/coll/iexscan/.libs src/mpi/coll/iexscan/_libs rm -rf src/mpi/coll/igather/.libs src/mpi/coll/igather/_libs rm -rf src/mpi/coll/igatherv/.libs src/mpi/coll/igatherv/_libs rm -rf src/mpi/coll/ineighbor_allgather/.libs src/mpi/coll/ineighbor_allgather/_libs rm -rf src/mpi/coll/ineighbor_allgatherv/.libs src/mpi/coll/ineighbor_allgatherv/_libs rm -rf src/mpi/coll/ineighbor_alltoall/.libs src/mpi/coll/ineighbor_alltoall/_libs rm -rf src/mpi/coll/ineighbor_alltoallv/.libs src/mpi/coll/ineighbor_alltoallv/_libs rm -rf src/mpi/coll/ineighbor_alltoallw/.libs src/mpi/coll/ineighbor_alltoallw/_libs rm -rf src/mpi/coll/ireduce/.libs src/mpi/coll/ireduce/_libs rm -rf src/mpi/coll/ireduce_scatter/.libs src/mpi/coll/ireduce_scatter/_libs rm -rf src/mpi/coll/ireduce_scatter_block/.libs src/mpi/coll/ireduce_scatter_block/_libs rm -rf src/mpi/coll/iscan/.libs src/mpi/coll/iscan/_libs rm -rf src/mpi/coll/iscatter/.libs src/mpi/coll/iscatter/_libs rm -rf src/mpi/coll/iscatterv/.libs src/mpi/coll/iscatterv/_libs rm -rf src/mpi/coll/neighbor_allgather/.libs src/mpi/coll/neighbor_allgather/_libs rm -rf src/mpi/coll/neighbor_allgatherv/.libs src/mpi/coll/neighbor_allgatherv/_libs rm -rf src/mpi/coll/neighbor_alltoall/.libs src/mpi/coll/neighbor_alltoall/_libs rm -rf src/mpi/coll/neighbor_alltoallv/.libs src/mpi/coll/neighbor_alltoallv/_libs rm -rf src/mpi/coll/neighbor_alltoallw/.libs src/mpi/coll/neighbor_alltoallw/_libs rm -rf src/mpi/coll/op/.libs src/mpi/coll/op/_libs rm -rf src/mpi/coll/reduce/.libs src/mpi/coll/reduce/_libs rm -rf src/mpi/coll/reduce_local/.libs src/mpi/coll/reduce_local/_libs rm -rf src/mpi/coll/reduce_scatter/.libs src/mpi/coll/reduce_scatter/_libs rm -rf src/mpi/coll/reduce_scatter_block/.libs src/mpi/coll/reduce_scatter_block/_libs rm -rf src/mpi/coll/scan/.libs src/mpi/coll/scan/_libs rm -rf src/mpi/coll/scatter/.libs src/mpi/coll/scatter/_libs rm -rf src/mpi/coll/scatterv/.libs src/mpi/coll/scatterv/_libs rm -rf src/mpi/coll/src/.libs src/mpi/coll/src/_libs rm -rf src/mpi/coll/transports/gentran/.libs src/mpi/coll/transports/gentran/_libs rm -rf src/mpi/coll/transports/stubtran/.libs src/mpi/coll/transports/stubtran/_libs rm -rf src/mpi/comm/.libs src/mpi/comm/_libs rm -rf src/mpi/datatype/.libs src/mpi/datatype/_libs rm -rf src/mpi/datatype/dataloop/.libs src/mpi/datatype/dataloop/_libs rm -rf src/mpi/debugger/.libs src/mpi/debugger/_libs rm -rf src/mpi/errhan/.libs src/mpi/errhan/_libs rm -rf src/mpi/group/.libs src/mpi/group/_libs rm -rf src/mpi/info/.libs src/mpi/info/_libs rm -rf src/mpi/init/.libs src/mpi/init/_libs rm -rf src/mpi/misc/.libs src/mpi/misc/_libs rm -rf src/mpi/pt2pt/.libs src/mpi/pt2pt/_libs rm -rf src/mpi/request/.libs src/mpi/request/_libs rm -rf src/mpi/rma/.libs src/mpi/rma/_libs rm -rf src/mpi/spawn/.libs src/mpi/spawn/_libs rm -rf src/mpi/timer/.libs src/mpi/timer/_libs rm -rf src/mpi/topo/.libs src/mpi/topo/_libs rm -rf src/mpi_t/.libs src/mpi_t/_libs rm -rf src/mpid/ch3/channels/nemesis/netmod/llc/.libs src/mpid/ch3/channels/nemesis/netmod/llc/_libs rm -rf src/mpid/ch3/channels/nemesis/netmod/mxm/.libs src/mpid/ch3/channels/nemesis/netmod/mxm/_libs rm -rf src/mpid/ch3/channels/nemesis/netmod/none/.libs src/mpid/ch3/channels/nemesis/netmod/none/_libs rm -rf src/mpid/ch3/channels/nemesis/netmod/ofi/.libs src/mpid/ch3/channels/nemesis/netmod/ofi/_libs rm -rf src/mpid/ch3/channels/nemesis/netmod/portals4/.libs src/mpid/ch3/channels/nemesis/netmod/portals4/_libs rm -rf src/mpid/ch3/channels/nemesis/netmod/tcp/.libs src/mpid/ch3/channels/nemesis/netmod/tcp/_libs rm -rf src/mpid/ch3/channels/nemesis/src/.libs src/mpid/ch3/channels/nemesis/src/_libs rm -rf src/mpid/ch3/channels/nemesis/utils/monitor/.libs src/mpid/ch3/channels/nemesis/utils/monitor/_libs rm -rf src/mpid/ch3/channels/nemesis/utils/replacements/.libs src/mpid/ch3/channels/nemesis/utils/replacements/_libs rm -rf src/mpid/ch3/channels/sock/src/.libs src/mpid/ch3/channels/sock/src/_libs rm -rf src/mpid/ch3/src/.libs src/mpid/ch3/src/_libs rm -rf src/mpid/ch3/util/ftb/.libs src/mpid/ch3/util/ftb/_libs rm -rf src/mpid/ch3/util/sock/.libs src/mpid/ch3/util/sock/_libs rm -rf src/mpid/ch4/generic/.libs src/mpid/ch4/generic/_libs rm -rf src/mpid/ch4/netmod/ofi/.libs src/mpid/ch4/netmod/ofi/_libs rm -rf src/mpid/ch4/netmod/portals4/.libs src/mpid/ch4/netmod/portals4/_libs rm -rf src/mpid/ch4/netmod/stubnm/.libs src/mpid/ch4/netmod/stubnm/_libs rm -rf src/mpid/ch4/netmod/ucx/.libs src/mpid/ch4/netmod/ucx/_libs rm -rf src/mpid/ch4/shm/posix/.libs src/mpid/ch4/shm/posix/_libs rm -rf src/mpid/ch4/shm/src/.libs src/mpid/ch4/shm/src/_libs rm -rf src/mpid/ch4/shm/stubshm/.libs src/mpid/ch4/shm/stubshm/_libs rm -rf src/mpid/ch4/src/.libs src/mpid/ch4/src/_libs rm -rf src/mpid/common/bc/.libs src/mpid/common/bc/_libs rm -rf src/mpid/common/hcoll/.libs src/mpid/common/hcoll/_libs rm -rf src/mpid/common/sched/.libs src/mpid/common/sched/_libs rm -rf src/mpid/common/shm/.libs src/mpid/common/shm/_libs rm -rf src/mutex/.libs src/mutex/_libs rm -rf src/nameserv/file/.libs src/nameserv/file/_libs rm -rf src/nameserv/pmi/.libs src/nameserv/pmi/_libs rm -rf src/pm/gforker/.libs src/pm/gforker/_libs rm -rf src/pm/remshell/.libs src/pm/remshell/_libs rm -rf src/pm/util/.libs src/pm/util/_libs rm -rf src/pmi/pmi2/simple/.libs src/pmi/pmi2/simple/_libs rm -rf src/pmi/simple/.libs src/pmi/simple/_libs rm -rf src/util/assert/.libs src/util/assert/_libs rm -rf src/util/cvar/.libs src/util/cvar/_libs rm -rf src/util/logging/rlog/.libs src/util/logging/rlog/_libs rm -rf src/util/mem/.libs src/util/mem/_libs rm -rf src/util/procmap/.libs src/util/procmap/_libs ( cd test && /usr/bin/make clean ) make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test' Making clean in mpi make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi' Making clean in util make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/util' rm -f *.o make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/util' Making clean in attr make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/attr' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "attrt attrend attrend2 attric attrerr attrerrcomm attrerrtype attrdeleteget attr2type attrorder attrordercomm attrordertype baseattr2 baseattrcomm fkeyval fkeyvalcomm keyval_double_free keyval_double_free_comm keyval_double_free_type keyval_double_free_win fkeyvaltype__BASIC__L23 fkeyvaltype__STRUCT__L34" || rm -f attrt attrend attrend2 attric attrerr attrerrcomm attrerrtype attrdeleteget attr2type attrorder attrordercomm attrordertype baseattr2 baseattrcomm fkeyval fkeyvalcomm keyval_double_free keyval_double_free_comm keyval_double_free_type keyval_double_free_win fkeyvaltype__BASIC__L23 fkeyvaltype__STRUCT__L34 rm -f *.o make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/attr' Making clean in basic make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/basic' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "self simple sendrecv srtest wtime netpipe patterns adapt" || rm -f self simple sendrecv srtest wtime netpipe patterns adapt rm -f *.o make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/basic' Making clean in datatype make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/datatype' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "blockindexed_misc blockindexed_zero_count concurrent_irecv contents contig_zero_count contigstruct cxx_types dataalign darray_pack darray_cyclic gaddress get_elements get_elements_pairtype getpartelm hindexed_zeros hindexed_block hindexed_block_contents hvecblklen indexed_misc large_count large_type large_type_sendrec large_vec lbub localpack longdouble lots_of_types pairtype_pack pairtype_size_extent sendrecvt2 sendrecvt4 simple_commit simple_pack simple_pack_external simple_pack_external2 simple_resized simple_size_extent sizedtypes slice_pack slice_pack_external struct_derived_zeros struct_empty_el struct_ezhov struct_no_real_types struct_pack structpack2 struct_verydeep struct_zero_count subarray subarray_pack tfree tmatchsize transpose_pack tresized tresized2 triangular_pack typecommit typefree typelb typename unpack unusual_noncontigs vecblklen zeroblks zeroparms" || rm -f blockindexed_misc blockindexed_zero_count concurrent_irecv contents contig_zero_count contigstruct cxx_types dataalign darray_pack darray_cyclic gaddress get_elements get_elements_pairtype getpartelm hindexed_zeros hindexed_block hindexed_block_contents hvecblklen indexed_misc large_count large_type large_type_sendrec large_vec lbub localpack longdouble lots_of_types pairtype_pack pairtype_size_extent sendrecvt2 sendrecvt4 simple_commit simple_pack simple_pack_external simple_pack_external2 simple_resized simple_size_extent sizedtypes slice_pack slice_pack_external struct_derived_zeros struct_empty_el struct_ezhov struct_no_real_types struct_pack structpack2 struct_verydeep struct_zero_count subarray subarray_pack tfree tmatchsize transpose_pack tresized tresized2 triangular_pack typecommit typefree typelb typename unpack unusual_noncontigs vecblklen zeroblks zeroparms rm -f *.o make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/datatype' Making clean in coll make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/coll' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "allgather2 allgather3 allgatherv2 allgatherv3 allgatherv4 allgather_struct allred allred2 allred3 allred4 allred5 allred6 allredmany alltoall1 alltoallv alltoallv0 alltoallw1 alltoallw2 alltoallw_zeros bcasttest bcastzerotype coll2 coll3 coll4 coll5 coll6 coll7 coll8 coll9 coll10 coll11 coll12 coll13 exscan exscan2 gather gather2 gather_big iallred ibarrier icallgather icallgatherv icallreduce icalltoall icalltoallv icalltoallw icbarrier icbcast icgather icgatherv icreduce icscatter icscatterv longuser nonblocking nonblocking2 nonblocking3 op_commutative opband opbor opbxor opland oplor oplxor opmax opmaxloc opmin opminloc opprod opsum red3 red4 red_scat_block red_scat_block2 redscat redscat2 redscat3 redscatblk3 redscatinter redscatbkinter reduce reduce_local scantst scatter2 scatter3 scattern scatterv uoplong nballtoall1 nbredscat nbredscat3 nbredscatinter nbcoll2 nbicbarrier nbicallgather nbicallgatherv nbicallreduce nbicbcast nbicalltoall nbicalltoallw nbicalltoallv nbicgather nbicgatherv nbicreduce nbicscatter nbicscatterv neighb_coll bcast__BASIC__L24 bcast__BASIC__L25 bcast__STRUCT__L35" || rm -f allgather2 allgather3 allgatherv2 allgatherv3 allgatherv4 allgather_struct allred allred2 allred3 allred4 allred5 allred6 allredmany alltoall1 alltoallv alltoallv0 alltoallw1 alltoallw2 alltoallw_zeros bcasttest bcastzerotype coll2 coll3 coll4 coll5 coll6 coll7 coll8 coll9 coll10 coll11 coll12 coll13 exscan exscan2 gather gather2 gather_big iallred ibarrier icallgather icallgatherv icallreduce icalltoall icalltoallv icalltoallw icbarrier icbcast icgather icgatherv icreduce icscatter icscatterv longuser nonblocking nonblocking2 nonblocking3 op_commutative opband opbor opbxor opland oplor oplxor opmax opmaxloc opmin opminloc opprod opsum red3 red4 red_scat_block red_scat_block2 redscat redscat2 redscat3 redscatblk3 redscatinter redscatbkinter reduce reduce_local scantst scatter2 scatter3 scattern scatterv uoplong nballtoall1 nbredscat nbredscat3 nbredscatinter nbcoll2 nbicbarrier nbicallgather nbicallgatherv nbicallreduce nbicbcast nbicalltoall nbicalltoallw nbicalltoallv nbicgather nbicgatherv nbicreduce nbicscatter nbicscatterv neighb_coll bcast__BASIC__L24 bcast__BASIC__L25 bcast__STRUCT__L35 rm -f *.o make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/coll' Making clean in comm make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/comm' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "commcreate1 dup dupic dup_with_info ic1 ic2 commname ctxalloc ctxsplit icgroup icsplit iccreate cmfree icm cmsplit cmsplit2 cmsplit_type comm_create_group comm_group_half comm_group_rand probe_intercomm comm_idup comm_idup_mul comm_idup_overlap comm_idup_isend comm_idup_nb comm_idup_iallreduce comm_idup_comm comm_idup_comm2 comm_create_group_idup comm_info" || rm -f commcreate1 dup dupic dup_with_info ic1 ic2 commname ctxalloc ctxsplit icgroup icsplit iccreate cmfree icm cmsplit cmsplit2 cmsplit_type comm_create_group comm_group_half comm_group_rand probe_intercomm comm_idup comm_idup_mul comm_idup_overlap comm_idup_isend comm_idup_nb comm_idup_iallreduce comm_idup_comm comm_idup_comm2 comm_create_group_idup comm_info rm -f *.o make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/comm' Making clean in errhan make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errhan' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "adderr commcall errfatal predef_eh errstring2 dynamic_errcode_predefined_errclass" || rm -f adderr commcall errfatal predef_eh errstring2 dynamic_errcode_predefined_errclass rm -f *.o make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errhan' Making clean in group make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/group' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "grouptest grouptest2 groupcreate gtranks groupnullincl gtranksperf" || rm -f grouptest grouptest2 groupcreate gtranks groupnullincl gtranksperf rm -f *.o make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/group' Making clean in info make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/info' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "infodup infodel infovallen infoorder infomany infomany2 infotest infoget infoenv" || rm -f infodup infodel infovallen infoorder infomany infomany2 infotest infoget infoenv rm -f *.o make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/info' Making clean in init make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/init' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "attrself exitst1 exitst2 exitst3 initstat version library_version timeout finalized" || rm -f attrself exitst1 exitst2 exitst3 initstat version library_version timeout finalized rm -f *.o make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/init' Making clean in pt2pt make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/pt2pt' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "anyall bottom bsend1 bsend2 bsend3 bsend4 bsend5 bsendalign cancelrecv cancelanysrc isendself issendselfcancel isendirecv eagerdt isendselfprobe bsendfrag bsendpending icsend rqstatus rqfreeb greq1 scancel scancel2 rcancel pscancel scancel_unmatch sendflood sendrecv2 sendrecv3 waitany_null probe_unexp probenull inactivereq waittestnull sendall large_message mprobe big_count_status many_isend manylmt huge_underflow huge_anysrc huge_dupcomm dtype_send recv_any irecv_any large_tag pingping__BASIC__L28 sendrecv1__BASIC__L29 sendself__BASIC__L30 sendrecv1__STRUCT__L38 sendself__STRUCT__L39 pingping__STRUCT__L40" || rm -f anyall bottom bsend1 bsend2 bsend3 bsend4 bsend5 bsendalign cancelrecv cancelanysrc isendself issendselfcancel isendirecv eagerdt isendselfprobe bsendfrag bsendpending icsend rqstatus rqfreeb greq1 scancel scancel2 rcancel pscancel scancel_unmatch sendflood sendrecv2 sendrecv3 waitany_null probe_unexp probenull inactivereq waittestnull sendall large_message mprobe big_count_status many_isend manylmt huge_underflow huge_anysrc huge_dupcomm dtype_send recv_any irecv_any large_tag pingping__BASIC__L28 sendrecv1__BASIC__L29 sendself__BASIC__L30 sendrecv1__STRUCT__L38 sendself__STRUCT__L39 pingping__STRUCT__L40 rm -f *.o make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/pt2pt' Making clean in rma make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/rma' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "allocmem test1 test2 test2_shm test3 test3_shm test4 test5 lockcontention lockcontention2 lockcontention3 lockopts contention_put contention_putget put_base put_bottom locknull wintest wintest_shm transpose1 transpose2 transpose3 transpose3_shm transpose4 transpose5 transpose6 transpose7 fetchandadd fetchandadd_tree winname putfidx accfence2 adlb_mimic1 getgroup contig_displ test1_am test2_am test2_am_shm test3_am test3_am_shm test4_am test5_am fetchandadd_am fetchandadd_tree_am accfence2_am test1_dt attrorderwin wincall fkeyvalwin baseattrwin nullpscw nullpscw_shm rmanull rmazero mixedsync manyrma2 manyrma2_shm manyrma3 selfrma strided_acc_onelock strided_putget_indexed strided_putget_indexed_shared strided_acc_indexed strided_acc_subarray strided_get_indexed strided_getacc_indexed strided_getacc_indexed_shared window_creation win_flavors win_shared win_shared_noncontig win_shared_noncontig_put win_shared_zerobyte win_shared_create_allocshm win_shared_create_no_allocshm win_zero win_large_shm win_dynamic_acc get_acc_local compare_and_swap linked_list linked_list_fop linked_list_lockall linked_list_bench_lock_all linked_list_bench_lock_excl linked_list_bench_lock_shr linked_list_bench_lock_shr_nocheck fetch_and_op_char fetch_and_op_short fetch_and_op_int fetch_and_op_long fetch_and_op_double fetch_and_op_long_double fetch_and_op_char_hwacc fetch_and_op_short_hwacc fetch_and_op_int_hwacc fetch_and_op_long_hwacc fetch_and_op_double_hwacc fetch_and_op_long_double_hwacc fetch_and_op_char_accop_hwacc fetch_and_op_short_accop_hwacc fetch_and_op_int_accop_hwacc fetch_and_op_long_accop_hwacc fetch_and_op_double_accop_hwacc fetch_and_op_long_double_accop_hwacc get_accumulate_short get_accumulate_long get_accumulate_double get_accumulate_int get_accumulate_short_derived get_accumulate_long_derived get_accumulate_double_derived get_accumulate_int_derived flush win_shared_put_flush_get reqops req_example req_example_shm win_info pscw_ordering pscw_ordering_shm mutex_bench mutex_bench_shared mutex_bench_shm mutex_bench_shm_ordered rma_contig badrma nb_test acc_loc acc_ordering fence_shm get_struct rput_local_comp racc_local_comp at_complete atomic_rmw_fop atomic_rmw_cas atomic_rmw_gacc atomic_get_short_int atomic_get_2int atomic_get_long_int atomic_get_float_int atomic_get_double_int atomic_get_long_double_int acc_pairtype manyget derived_acc_flush_local large_acc_flush_local large_small_acc put_flush_get acc_flush_get gacc_flush_get fop_flush_get cas_flush_get win_shared_put_flush_load win_shared_acc_flush_load win_shared_gacc_flush_load win_shared_fop_flush_load win_shared_cas_flush_load overlap_wins_put overlap_wins_acc overlap_wins_gacc overlap_wins_fop overlap_wins_cas rget_unlock lock_nested rget_testall win_shared_query_null aint accfence1__BASIC__L31 accpscw1__BASIC__L32 epochtest__BASIC__L33 getfence1__BASIC__L34 getfence1__BASIC__L35 lock_contention_dt__BASIC__L36 lock_dt__BASIC__L37 lock_dt_flush__BASIC__L38 lock_dt_flushlocal__BASIC__L39 lockall_dt__BASIC__L40 lockall_dt_flush__BASIC__L41 lockall_dt_flushall__BASIC__L42 lockall_dt_flushlocal__BASIC__L43 lockall_dt_flushlocalall__BASIC__L44 putfence1__BASIC__L45 putfence1__BASIC__L46 putpscw1__BASIC__L47 accfence1__STRUCT__L41 accpscw1__STRUCT__L42 epochtest__STRUCT__L43 getfence1__STRUCT__L44 lock_contention_dt__STRUCT__L45 lock_dt__STRUCT__L46 lock_dt_flush__STRUCT__L47 lock_dt_flushlocal__STRUCT__L48 lockall_dt__STRUCT__L49 lockall_dt_flush__STRUCT__L50 lockall_dt_flushall__STRUCT__L51 lockall_dt_flushlocal__STRUCT__L52 lockall_dt_flushlocalall__STRUCT__L53 putfence1__STRUCT__L54 putpscw1__STRUCT__L55" || rm -f allocmem test1 test2 test2_shm test3 test3_shm test4 test5 lockcontention lockcontention2 lockcontention3 lockopts contention_put contention_putget put_base put_bottom locknull wintest wintest_shm transpose1 transpose2 transpose3 transpose3_shm transpose4 transpose5 transpose6 transpose7 fetchandadd fetchandadd_tree winname putfidx accfence2 adlb_mimic1 getgroup contig_displ test1_am test2_am test2_am_shm test3_am test3_am_shm test4_am test5_am fetchandadd_am fetchandadd_tree_am accfence2_am test1_dt attrorderwin wincall fkeyvalwin baseattrwin nullpscw nullpscw_shm rmanull rmazero mixedsync manyrma2 manyrma2_shm manyrma3 selfrma strided_acc_onelock strided_putget_indexed strided_putget_indexed_shared strided_acc_indexed strided_acc_subarray strided_get_indexed strided_getacc_indexed strided_getacc_indexed_shared window_creation win_flavors win_shared win_shared_noncontig win_shared_noncontig_put win_shared_zerobyte win_shared_create_allocshm win_shared_create_no_allocshm win_zero win_large_shm win_dynamic_acc get_acc_local compare_and_swap linked_list linked_list_fop linked_list_lockall linked_list_bench_lock_all linked_list_bench_lock_excl linked_list_bench_lock_shr linked_list_bench_lock_shr_nocheck fetch_and_op_char fetch_and_op_short fetch_and_op_int fetch_and_op_long fetch_and_op_double fetch_and_op_long_double fetch_and_op_char_hwacc fetch_and_op_short_hwacc fetch_and_op_int_hwacc fetch_and_op_long_hwacc fetch_and_op_double_hwacc fetch_and_op_long_double_hwacc fetch_and_op_char_accop_hwacc fetch_and_op_short_accop_hwacc fetch_and_op_int_accop_hwacc fetch_and_op_long_accop_hwacc fetch_and_op_double_accop_hwacc fetch_and_op_long_double_accop_hwacc get_accumulate_short get_accumulate_long get_accumulate_double get_accumulate_int get_accumulate_short_derived get_accumulate_long_derived get_accumulate_double_derived get_accumulate_int_derived flush win_shared_put_flush_get reqops req_example req_example_shm win_info pscw_ordering pscw_ordering_shm mutex_bench mutex_bench_shared mutex_bench_shm mutex_bench_shm_ordered rma_contig badrma nb_test acc_loc acc_ordering fence_shm get_struct rput_local_comp racc_local_comp at_complete atomic_rmw_fop atomic_rmw_cas atomic_rmw_gacc atomic_get_short_int atomic_get_2int atomic_get_long_int atomic_get_float_int atomic_get_double_int atomic_get_long_double_int acc_pairtype manyget derived_acc_flush_local large_acc_flush_local large_small_acc put_flush_get acc_flush_get gacc_flush_get fop_flush_get cas_flush_get win_shared_put_flush_load win_shared_acc_flush_load win_shared_gacc_flush_load win_shared_fop_flush_load win_shared_cas_flush_load overlap_wins_put overlap_wins_acc overlap_wins_gacc overlap_wins_fop overlap_wins_cas rget_unlock lock_nested rget_testall win_shared_query_null aint accfence1__BASIC__L31 accpscw1__BASIC__L32 epochtest__BASIC__L33 getfence1__BASIC__L34 getfence1__BASIC__L35 lock_contention_dt__BASIC__L36 lock_dt__BASIC__L37 lock_dt_flush__BASIC__L38 lock_dt_flushlocal__BASIC__L39 lockall_dt__BASIC__L40 lockall_dt_flush__BASIC__L41 lockall_dt_flushall__BASIC__L42 lockall_dt_flushlocal__BASIC__L43 lockall_dt_flushlocalall__BASIC__L44 putfence1__BASIC__L45 putfence1__BASIC__L46 putpscw1__BASIC__L47 accfence1__STRUCT__L41 accpscw1__STRUCT__L42 epochtest__STRUCT__L43 getfence1__STRUCT__L44 lock_contention_dt__STRUCT__L45 lock_dt__STRUCT__L46 lock_dt_flush__STRUCT__L47 lock_dt_flushlocal__STRUCT__L48 lockall_dt__STRUCT__L49 lockall_dt_flush__STRUCT__L50 lockall_dt_flushall__STRUCT__L51 lockall_dt_flushlocal__STRUCT__L52 lockall_dt_flushlocalall__STRUCT__L53 putfence1__STRUCT__L54 putpscw1__STRUCT__L55 rm -f *.o make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/rma' Making clean in topo make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/topo' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "cartmap1 cartzero cartshift1 cartsuball cartcreates dims1 dims2 dims3 dims4 dims5 graphmap1 topotest topodup graphcr graphcr2 distgraph1 dgraph_unwgt" || rm -f cartmap1 cartzero cartshift1 cartsuball cartcreates dims1 dims2 dims3 dims4 dims5 graphmap1 topotest topodup graphcr graphcr2 distgraph1 dgraph_unwgt rm -f *.o make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/topo' Making clean in errors make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors' Making clean in attr make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/attr' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "keyvalmis" || rm -f keyvalmis rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/attr' Making clean in coll make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/coll' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "noalias noalias2 noalias3 rerr bcastlength reduce_local nb_noalias nb_rerr ibcastlength" || rm -f noalias noalias2 noalias3 rerr bcastlength reduce_local nb_noalias nb_rerr ibcastlength rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/coll' Making clean in comm make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/comm' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "cfree ccreate1 manysplit userdup too_many_comms too_many_comms2 too_many_comms3 too_many_icomms too_many_icomms2 comm_create_nullarg comm_create_group_nullarg comm_get_info_nullarg comm_group_nullarg comm_size_nullarg comm_split_nullarg comm_split_type_nullarg intercomm_create_nullarg subcomm_abort subcomm_abort2 intercomm_abort" || rm -f cfree ccreate1 manysplit userdup too_many_comms too_many_comms2 too_many_comms3 too_many_icomms too_many_icomms2 comm_create_nullarg comm_create_group_nullarg comm_get_info_nullarg comm_group_nullarg comm_size_nullarg comm_split_nullarg comm_split_type_nullarg intercomm_create_nullarg subcomm_abort subcomm_abort2 intercomm_abort rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/comm' Making clean in datatype make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/datatype' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "getcnterr type_contiguous_nullarg type_extent_nullarg type_get_extent_nullarg type_get_true_extent_nullarg type_get_true_extent_x_nullarg type_lb_nullarg type_ub_nullarg type_size_x_nullarg type_vector_nullarg" || rm -f getcnterr type_contiguous_nullarg type_extent_nullarg type_get_extent_nullarg type_get_true_extent_nullarg type_get_true_extent_x_nullarg type_lb_nullarg type_ub_nullarg type_size_x_nullarg type_vector_nullarg rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/datatype' Making clean in group make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/group' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "gerr group_difference_nullarg group_intersection_nullarg group_range_excl_nullarg group_range_incl_nullarg group_rank_nullarg group_size_nullarg group_translate_ranks_nullarg group_union_nullarg" || rm -f gerr group_difference_nullarg group_intersection_nullarg group_range_excl_nullarg group_range_incl_nullarg group_rank_nullarg group_size_nullarg group_translate_ranks_nullarg group_union_nullarg rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/group' Making clean in pt2pt make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/pt2pt' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "proberank truncmsg1 truncmsg2 errinstatts errinstatta errinstatws errinstatwa" || rm -f proberank truncmsg1 truncmsg2 errinstatts errinstatta errinstatws errinstatwa rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/pt2pt' Making clean in rma make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/rma' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "winerr winerr2 cas_type_check win_sync_unlock win_sync_free_pt win_sync_free_at win_sync_complete win_sync_lock_at win_sync_lock_pt win_sync_lock_fence win_sync_nested win_sync_op" || rm -f winerr winerr2 cas_type_check win_sync_unlock win_sync_free_pt win_sync_free_at win_sync_complete win_sync_lock_at win_sync_lock_pt win_sync_lock_fence win_sync_nested win_sync_op rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/rma' Making clean in topo make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/topo' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "cartsmall" || rm -f cartsmall rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/topo' Making clean in basic make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/basic' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "lefthandles debabort" || rm -f lefthandles debabort rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/basic' Making clean in faults make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/faults' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "pt2ptf1 pt2ptf2 collf1 collf2" || rm -f pt2ptf1 pt2ptf2 collf1 collf2 rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/faults' Making clean in io make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/io' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "fileerrret openerr file_errhdl" || rm -f fileerrret openerr file_errhdl rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/io' Making clean in f77 make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/f77' Making clean in io make[6]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/f77/io' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "uerrhandf" || rm -f uerrhandf rm -f *.o make[6]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/f77/io' make[6]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/f77' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap make[6]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/f77' make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/f77' Making clean in f90 make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/f90' Making clean in io make[6]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/f90/io' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "uerrhandf90" || rm -f uerrhandf90 rm -f *.o make[6]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/f90/io' make[6]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/f90' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap make[6]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/f90' make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/f90' Making clean in cxx make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/cxx' Making clean in io make[6]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/cxx/io' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "fileerrretx errgetfilex throwtestfilex" || rm -f fileerrretx errgetfilex throwtestfilex rm -f *.o make[6]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/cxx/io' Making clean in errhan make[6]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/cxx/errhan' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "commerrx errgetx errsetx throwtest" || rm -f commerrx errgetx errsetx throwtest rm -f *.o make[6]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/cxx/errhan' make[6]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/cxx' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml make[6]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/cxx' make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/cxx' Making clean in spawn make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/spawn' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "badport unpub lookup_name connect_timeout_no_accept connect_timeout_mismatch" || rm -f badport unpub lookup_name connect_timeout_no_accept connect_timeout_mismatch rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors/spawn' make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors' make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/errors' Making clean in manual make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/manual' Making clean in mpi_t make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/manual/mpi_t' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "mpit_test mpit_test2 nem_fbox_fallback_to_queue_count unexpected_recvq_buffer_size" || rm -f mpit_test mpit_test2 nem_fbox_fallback_to_queue_count unexpected_recvq_buffer_size rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/manual/mpi_t' make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/manual' test -z "summary.xml summary.tap summary.junit.xml test-port" || rm -f summary.xml summary.tap summary.junit.xml test-port test -z "singjoin testconnect testconnectserial dimsbalanced spawntest_master spawntest_child segfault" || rm -f singjoin testconnect testconnectserial dimsbalanced spawntest_master spawntest_child segfault rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/manual' make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/manual' Making clean in perf make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/perf' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "transp_datatype non_zero_root sendrecvl twovec dtpack allredtrace commcreatep allredtrace commcreatep timer manyrma nestvec nestvec2 indexperf" || rm -f transp_datatype non_zero_root sendrecvl twovec dtpack allredtrace commcreatep allredtrace commcreatep timer manyrma nestvec nestvec2 indexperf rm -f *.o make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/perf' Making clean in mpi_t make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/mpi_t' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "mpi_t_str mpit_vars cvarwrite getindex" || rm -f mpi_t_str mpit_vars cvarwrite getindex rm -f *.o make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/mpi_t' Making clean in impls make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/impls' Making clean in mpich make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/impls/mpich' Making clean in mpi_t make[6]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/impls/mpich/mpi_t' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "collparmt" || rm -f collparmt rm -f *.o make[6]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/impls/mpich/mpi_t' make[6]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/impls/mpich' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml make[6]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/impls/mpich' make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/impls/mpich' make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/impls' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/impls' make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/impls' Making clean in ckpoint make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/ckpoint' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "write_ckpoint" || rm -f write_ckpoint rm -f *.o make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/ckpoint' Making clean in ft make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/ft' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "die abort sendalive isendalive senddead recvdead isenddead irecvdead barrier gather reduce bcast scatter failure_ack anysource revoke_nofail shrink agree multi_isendalive agree_shrink revoke_shrink nbccoll" || rm -f die abort sendalive isendalive senddead recvdead isenddead irecvdead barrier gather reduce bcast scatter failure_ack anysource revoke_nofail shrink agree multi_isendalive agree_shrink revoke_shrink nbccoll rm -f *.o make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/ft' Making clean in dtpools make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/dtpools' Making clean in src make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/dtpools/src' rm -rf .libs _libs test -z "libdtpools.la" || rm -f libdtpools.la rm -f ./so_locations rm -f *.o rm -f *.lo make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/dtpools/src' Making clean in include make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/dtpools/include' rm -rf .libs _libs rm -f *.lo make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/dtpools/include' make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/dtpools' rm -rf .libs _libs rm -f *.lo make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/dtpools' make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/dtpools' Making clean in io make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/io' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml rm -f testfile testfile.* test -z "rdwrord rdwrzero getextent setinfo setviewcur i_noncontig async async_any userioerr resized resized2 bigtype hindexed_io simple_collective external32_derived_dtype tst_fileview i_bigtype i_hindexed_io i_rdwrord i_setviewcur i_aggregation1 i_aggregation2 i_coll_test i_darray_read i_hindexed i_noncontig_coll i_noncontig_coll2 i_types_with_zeros" || rm -f rdwrord rdwrzero getextent setinfo setviewcur i_noncontig async async_any userioerr resized resized2 bigtype hindexed_io simple_collective external32_derived_dtype tst_fileview i_bigtype i_hindexed_io i_rdwrord i_setviewcur i_aggregation1 i_aggregation2 i_coll_test i_darray_read i_hindexed i_noncontig_coll i_noncontig_coll2 i_types_with_zeros rm -f *.o make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/io' Making clean in f77 make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77' Making clean in util make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77/util' rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77/util' Making clean in attr make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77/attr' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "attrmpi1f baseattrf baseattr2f commattrf commattr2f commattr3f commattr4f typeattrf typeattr2f typeattr3f" || rm -f attrmpi1f baseattrf baseattr2f commattrf commattr2f commattr3f commattr4f typeattrf typeattr2f typeattr3f rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77/attr' Making clean in datatype make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77/datatype' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "typenamef typesnamef typecntsf typesubf typem2f gaddressf packef allctypesf hindex1f hindexed_blockf typename3f bottom" || rm -f typenamef typesnamef typecntsf typesubf typem2f gaddressf packef allctypesf hindex1f hindexed_blockf typename3f bottom rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77/datatype' Making clean in coll make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77/coll' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "uallreducef exscanf alltoallwf inplacef allredint8f allredopttf reducelocalf alltoallvf redscatf split_typef nonblockingf vw_inplacef red_scat_blockf nonblocking_inpf" || rm -f uallreducef exscanf alltoallwf inplacef allredint8f allredopttf reducelocalf alltoallvf redscatf split_typef nonblockingf vw_inplacef red_scat_blockf nonblocking_inpf rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77/coll' Making clean in pt2pt make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77/pt2pt' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "sendf ssendf rsendf isendf irsendf issendf psendf prsendf pssendf sendrecvf sendrecvreplf statusesf greqf mprobef" || rm -f sendf ssendf rsendf isendf irsendf issendf psendf prsendf pssendf sendrecvf sendrecvreplf statusesf greqf mprobef rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77/pt2pt' Making clean in info make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77/info' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "infotestf infotest2f" || rm -f infotestf infotest2f rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77/info' Making clean in init make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77/init' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "baseenvf" || rm -f baseenvf rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77/init' Making clean in comm make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77/comm' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "commnamef commerrf" || rm -f commnamef commerrf rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77/comm' Making clean in topo make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77/topo' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "cartcrf dgraph_wgtf dgraph_unwgtf" || rm -f cartcrf dgraph_wgtf dgraph_unwgtf rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77/topo' Making clean in ext make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77/ext' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "c2f2cf ctypesinf c2fmult" || rm -f c2f2cf ctypesinf c2fmult rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77/ext' Making clean in profile make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77/profile' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "profile1f" || rm -f profile1f rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77/profile' Making clean in spawn make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77/spawn' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "namepubf spawnf spawnargvf spawnmultf spawnmult2f connaccf" || rm -f namepubf spawnf spawnargvf spawnmultf spawnmult2f connaccf rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77/spawn' Making clean in io make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77/io' test -z "summary.xml summary.tap gen-src-tmp gen-src-stamp" || rm -f summary.xml summary.tap gen-src-tmp gen-src-stamp rm -f .iotest.txt.* test -z "iwriteatf iwritef iwriteshf writef writeatf writeallf writeallbef writeordf writeordbef writeshf writeatallf writeatallbef fileerrf fileinfof shpositionf atomicityf miscfilef setviewcurf c2fmultio c2f2ciof i_setviewcurf iwriteatallf" || rm -f iwriteatf iwritef iwriteshf writef writeatf writeallf writeallbef writeordf writeordbef writeshf writeatallf writeatallbef fileerrf fileinfof shpositionf atomicityf miscfilef setviewcurf c2fmultio c2f2ciof i_setviewcurf iwriteatallf rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77/io' Making clean in rma make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77/rma' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "winscale1f winscale2f winfencef wingetf winerrf winnamef wingroupf winaccf winaccf c2f2cwinf baseattrwinf winattrf winattr2f aintf" || rm -f winscale1f winscale2f winfencef wingetf winerrf winnamef wingroupf winaccf winaccf c2f2cwinf baseattrwinf winattrf winattr2f aintf rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77/rma' make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77' make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f77' Making clean in f90 make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90' Making clean in util make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/util' rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/util' Making clean in timer make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/timer' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "wtimef90" || rm -f wtimef90 rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/timer' Making clean in attr make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/attr' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap if [ "mod" != "" ] ; then rm -f *.mod ; fi test -z "attrmpi1f90 baseattrf90 baseattr2f90 commattrf90 commattr2f90 commattr3f90 commattr4f90 typeattrf90 typeattr2f90 typeattr3f90 fandcattrf90 baseattr3f90 attrlangf90" || rm -f attrmpi1f90 baseattrf90 baseattr2f90 commattrf90 commattr2f90 commattr3f90 commattr4f90 typeattrf90 typeattr2f90 typeattr3f90 fandcattrf90 baseattr3f90 attrlangf90 rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/attr' Making clean in coll make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/coll' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "uallreducef90 exscanf90 alltoallwf90 inplacef90 allredint8f90 allredopttf90 reducelocalf90 alltoallvf90 redscatf90 split_typef90 nonblockingf90 vw_inplacef90 red_scat_blockf90 nonblocking_inpf90" || rm -f uallreducef90 exscanf90 alltoallwf90 inplacef90 allredint8f90 allredopttf90 reducelocalf90 alltoallvf90 redscatf90 split_typef90 nonblockingf90 vw_inplacef90 red_scat_blockf90 nonblocking_inpf90 rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/coll' Making clean in datatype make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/datatype' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "typenamef90 typesnamef90 typecntsf90 typesubf90 typem2f90 gaddressf90 packef90 allctypesf90 hindex1f90 hindexed_blockf90 typename3f90 bottom structf indtype createf90 sizeof kinds trf90 get_elem_d get_elem_u" || rm -f typenamef90 typesnamef90 typecntsf90 typesubf90 typem2f90 gaddressf90 packef90 allctypesf90 hindex1f90 hindexed_blockf90 typename3f90 bottom structf indtype createf90 sizeof kinds trf90 get_elem_d get_elem_u rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/datatype' Making clean in pt2pt make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/pt2pt' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "sendf90 ssendf90 rsendf90 isendf90 irsendf90 issendf90 psendf90 prsendf90 pssendf90 sendrecvf90 sendrecvreplf90 statusesf90 greqf90 mprobef90" || rm -f sendf90 ssendf90 rsendf90 isendf90 irsendf90 issendf90 psendf90 prsendf90 pssendf90 sendrecvf90 sendrecvreplf90 statusesf90 greqf90 mprobef90 rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/pt2pt' Making clean in info make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/info' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "infotestf90 infotest2f90" || rm -f infotestf90 infotest2f90 rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/info' Making clean in comm make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/comm' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "commnamef90 commerrf90" || rm -f commnamef90 commerrf90 rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/comm' Making clean in topo make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/topo' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "cartcrf90 dgraph_wgtf90 dgraph_unwgtf90" || rm -f cartcrf90 dgraph_wgtf90 dgraph_unwgtf90 rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/topo' Making clean in ext make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/ext' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "c2f2cf90 ctypesinf90 c2f90mult" || rm -f c2f2cf90 ctypesinf90 c2f90mult rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/ext' Making clean in init make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/init' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "baseenvf90" || rm -f baseenvf90 rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/init' Making clean in misc make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/misc' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "sizeof2" || rm -f sizeof2 rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/misc' Making clean in f90types make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/f90types' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "createf90types" || rm -f createf90types rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/f90types' Making clean in profile make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/profile' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "profile1f90" || rm -f profile1f90 rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/profile' Making clean in rma make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/rma' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "winscale1f90 winscale2f90 winfencef90 wingetf90 winerrf90 winnamef90 wingroupf90 winaccf90 winaccf90 c2f2cwinf90 baseattrwinf90 winattrf90 winattr2f90 aintf90" || rm -f winscale1f90 winscale2f90 winfencef90 wingetf90 winerrf90 winnamef90 wingroupf90 winaccf90 winaccf90 c2f2cwinf90 baseattrwinf90 winattrf90 winattr2f90 aintf90 rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/rma' Making clean in spawn make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/spawn' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "namepubf90 spawnf90 spawnargvf90 spawnmultf90 spawnmult2f90 connaccf90 spawnargvf03 spawnmultf03" || rm -f namepubf90 spawnf90 spawnargvf90 spawnmultf90 spawnmult2f90 connaccf90 spawnargvf03 spawnmultf03 rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/spawn' Making clean in io make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/io' test -z "summary.xml summary.tap gen-src-tmp gen-src-stamp" || rm -f summary.xml summary.tap gen-src-tmp gen-src-stamp rm -f .iotest.txt.* test -z "iwriteatf90 iwritef90 iwriteshf90 writef90 writeatf90 writeallf90 writeallbef90 writeordf90 writeordbef90 writeshf90 writeatallf90 writeatallbef90 fileerrf90 fileinfof90 shpositionf90 atomicityf90 miscfilef90 setviewcurf90 c2f90multio c2f2ciof90 i_setviewcurf90 iwriteatallf90" || rm -f iwriteatf90 iwritef90 iwriteshf90 writef90 writeatf90 writeallf90 writeallbef90 writeordf90 writeordbef90 writeshf90 writeatallf90 writeatallbef90 fileerrf90 fileinfof90 shpositionf90 atomicityf90 miscfilef90 setviewcurf90 c2f90multio c2f2ciof90 i_setviewcurf90 iwriteatallf90 rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90/io' make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90' make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/f90' Making clean in cxx make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/cxx' Making clean in util make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/util' rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/util' Making clean in attr make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/attr' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "attrtx attricx baseattrcommx fkeyvalcommx fkeyvaltypex__BASIC__L26" || rm -f attrtx attricx baseattrcommx fkeyvalcommx fkeyvaltypex__BASIC__L26 rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/attr' Making clean in pt2pt make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/pt2pt' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "bsend1cxx sendrecvx" || rm -f bsend1cxx sendrecvx rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/pt2pt' Making clean in init make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/init' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "baseenv initstatx initstat2x" || rm -f baseenv initstatx initstat2x rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/init' Making clean in info make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/info' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "infodupx infodelx infovallenx infoorderx" || rm -f infodupx infodelx infovallenx infoorderx rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/info' Making clean in comm make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/comm' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "commname2" || rm -f commname2 rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/comm' Making clean in coll make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/coll' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "arcomplex uallredx uallreduce ureduce ureducelocal uscan uexscan icbcastx icbarrierx icgatherx icgathervx icscatterx icscattervx icallgatherx icallgathervx icallreducex icreducex icalltoallx alltoallw2x reduceboolx redscatblk" || rm -f arcomplex uallredx uallreduce ureduce ureducelocal uscan uexscan icbcastx icbarrierx icgatherx icgathervx icscatterx icscattervx icallgatherx icallgathervx icallreducex icreducex icalltoallx alltoallw2x reduceboolx redscatblk rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/coll' Making clean in datatype make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/datatype' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "typecntsx typenamex typemiscx packsizex__BASIC__L27" || rm -f typecntsx typenamex typemiscx packsizex__BASIC__L27 rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/datatype' Making clean in errhan make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/errhan' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "commcallx" || rm -f commcallx rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/errhan' Making clean in topo make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/topo' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/topo' Making clean in io make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/io' test -z "summary.xml summary.tap gen-src-tmp gen-src-stamp" || rm -f summary.xml summary.tap gen-src-tmp gen-src-stamp rm -f .iotest.txt.* test -z "iwriteatx iwritex iwriteshx writex writeatx writeallx writeatallx writeallbex writeordx writeordbex writeshx writeatallbex iwriteatnosx iwritenosx iwriteshnosx writenosx writeatnosx writeallnosx writeatallnosx writeallbenosx writeordnosx writeordbenosx writeshnosx writeatallbenosx fileerrx fileinfox shpositionx setinfox filemiscx seekavail" || rm -f iwriteatx iwritex iwriteshx writex writeatx writeallx writeatallx writeallbex writeordx writeordbex writeshx writeatallbex iwriteatnosx iwritenosx iwriteshnosx writenosx writeatnosx writeallnosx writeatallnosx writeallbenosx writeordnosx writeordbenosx writeshnosx writeatallbenosx fileerrx fileinfox shpositionx setinfox filemiscx seekavail rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/io' Making clean in rma make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/rma' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "winnamex wincallx getgroupx winfencex winscale1x winscale2x fkeyvalwinx" || rm -f winnamex wincallx getgroupx winfencex winscale1x winscale2x fkeyvalwinx rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/rma' Making clean in spawn make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/spawn' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap test -z "spawnargvx spawnintrax namepubx selfconaccx" || rm -f spawnargvx spawnintrax namepubx selfconaccx rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/cxx/spawn' make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/cxx' test -z "summary.xml summary.tap" || rm -f summary.xml summary.tap make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/cxx' make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/cxx' Making clean in threads make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/threads' Making clean in util make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/threads/util' rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/threads/util' Making clean in pt2pt make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/threads/pt2pt' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "threads threaded_sr alltoall sendselfth greq_wait greq_test multisend multisend2 multisend3 multisend4 ibsend" || rm -f threads threaded_sr alltoall sendselfth greq_wait greq_test multisend multisend2 multisend3 multisend4 ibsend rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/threads/pt2pt' Making clean in comm make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/threads/comm' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "ctxdup dup_leak_test comm_dup_deadlock comm_create_threads comm_create_group_threads comm_create_group_threads2 comm_idup idup_deadlock ctxidup idup_nb idup_comm_gen" || rm -f ctxdup dup_leak_test comm_dup_deadlock comm_create_threads comm_create_group_threads comm_create_group_threads2 comm_idup idup_deadlock ctxidup idup_nb idup_comm_gen rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/threads/comm' Making clean in init make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/threads/init' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "initth" || rm -f initth rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/threads/init' Making clean in mpi_t make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/threads/mpi_t' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "mpit_threading" || rm -f mpit_threading rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/threads/mpi_t' Making clean in spawn make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/threads/spawn' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "multispawn th_taskmaster" || rm -f multispawn th_taskmaster rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/threads/spawn' Making clean in rma make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/threads/rma' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "multirma multiget multifence" || rm -f multirma multiget multifence rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/threads/rma' Making clean in coll make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/threads/coll' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "iallred allred" || rm -f iallred allred rm -f *.o make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/threads/coll' make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/threads' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/threads' make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/threads' Making clean in spawn make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/spawn' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "namepub spawn1 spawninfo1 spawnminfo1 spawn2 spawnintra spawnargv spawnmanyarg spaconacc spaconacc2 selfconacc spawnmult2 taskmaster join disconnect_reconnect disconnect_reconnect2 disconnect_reconnect3 multiple_ports multiple_ports2 spaiccreate spaiccreate2 disconnect disconnect2 disconnect3 pgroup_connect_test pgroup_intercomm_test concurrent_spawns spawn_rootargs" || rm -f namepub spawn1 spawninfo1 spawnminfo1 spawn2 spawnintra spawnargv spawnmanyarg spaconacc spaconacc2 selfconacc spawnmult2 taskmaster join disconnect_reconnect disconnect_reconnect2 disconnect_reconnect3 multiple_ports multiple_ports2 spaiccreate spaiccreate2 disconnect disconnect2 disconnect3 pgroup_connect_test pgroup_intercomm_test concurrent_spawns spawn_rootargs rm -f *.o make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/spawn' Making clean in ft make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/ft' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml test -z "die abort sendalive isendalive senddead recvdead isenddead irecvdead barrier gather reduce bcast scatter failure_ack anysource revoke_nofail shrink agree multi_isendalive agree_shrink revoke_shrink nbccoll" || rm -f die abort sendalive isendalive senddead recvdead isenddead irecvdead barrier gather reduce bcast scatter failure_ack anysource revoke_nofail shrink agree multi_isendalive agree_shrink revoke_shrink nbccoll rm -f *.o make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi/ft' Making clean in . make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi' test -z "summary.xml summary.tap summary.junit.xml" || rm -f summary.xml summary.tap summary.junit.xml make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/mpi' Making clean in commands make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/commands' test -z "err.txt out.log out.txt a.out" || rm -f err.txt out.log out.txt a.out rm -rf .libs _libs rm -f stdiotest stdintest stdintest2 checkenv1 rtest rtestf rtestx testout rm -f *.o rm -f *.lo make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test/commands' Making clean in . make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test' rm -rf .libs _libs rm -f *.lo make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/test' test -z "" || rm -f test -z " " || rm -f rm -f *.o rm -f src/binding/cxx/*.o rm -f src/binding/cxx/*.lo rm -f src/binding/fortran/mpif_h/*.o rm -f src/binding/fortran/mpif_h/*.lo rm -f src/binding/fortran/use_mpi/*.o rm -f src/binding/fortran/use_mpi/*.lo rm -f src/binding/fortran/use_mpi_f08/*.o rm -f src/binding/fortran/use_mpi_f08/*.lo rm -f src/binding/fortran/use_mpi_f08/wrappers_c/*.o rm -f src/binding/fortran/use_mpi_f08/wrappers_c/*.lo rm -f src/binding/fortran/use_mpi_f08/wrappers_f/*.o rm -f src/binding/fortran/use_mpi_f08/wrappers_f/*.lo rm -f src/binding/fortran/use_mpi_f08/wrappers_f/profiling/*.o rm -f src/binding/fortran/use_mpi_f08/wrappers_f/profiling/*.lo rm -f src/env/*.o rm -f src/glue/romio/*.o rm -f src/glue/romio/*.lo rm -f src/mpi/attr/*.o rm -f src/mpi/attr/*.lo rm -f src/mpi/coll/*.o rm -f src/mpi/coll/*.lo rm -f src/mpi/coll/algorithms/recexchalgo/*.o rm -f src/mpi/coll/algorithms/recexchalgo/*.lo rm -f src/mpi/coll/algorithms/stubalgo/*.o rm -f src/mpi/coll/algorithms/stubalgo/*.lo rm -f src/mpi/coll/algorithms/treealgo/*.o rm -f src/mpi/coll/algorithms/treealgo/*.lo rm -f src/mpi/coll/allgather/*.o rm -f src/mpi/coll/allgather/*.lo rm -f src/mpi/coll/allgatherv/*.o rm -f src/mpi/coll/allgatherv/*.lo rm -f src/mpi/coll/allreduce/*.o rm -f src/mpi/coll/allreduce/*.lo rm -f src/mpi/coll/allreduce_group/*.o rm -f src/mpi/coll/allreduce_group/*.lo rm -f src/mpi/coll/alltoall/*.o rm -f src/mpi/coll/alltoall/*.lo rm -f src/mpi/coll/alltoallv/*.o rm -f src/mpi/coll/alltoallv/*.lo rm -f src/mpi/coll/alltoallw/*.o rm -f src/mpi/coll/alltoallw/*.lo rm -f src/mpi/coll/barrier/*.o rm -f src/mpi/coll/barrier/*.lo rm -f src/mpi/coll/bcast/*.o rm -f src/mpi/coll/bcast/*.lo rm -f src/mpi/coll/exscan/*.o rm -f src/mpi/coll/exscan/*.lo rm -f src/mpi/coll/gather/*.o rm -f src/mpi/coll/gather/*.lo rm -f src/mpi/coll/gatherv/*.o rm -f src/mpi/coll/gatherv/*.lo rm -f src/mpi/coll/iallgather/*.o rm -f src/mpi/coll/iallgather/*.lo rm -f src/mpi/coll/iallgatherv/*.o rm -f src/mpi/coll/iallgatherv/*.lo rm -f src/mpi/coll/iallreduce/*.o rm -f src/mpi/coll/iallreduce/*.lo rm -f src/mpi/coll/ialltoall/*.o rm -f src/mpi/coll/ialltoall/*.lo rm -f src/mpi/coll/ialltoallv/*.o rm -f src/mpi/coll/ialltoallv/*.lo rm -f src/mpi/coll/ialltoallw/*.o rm -f src/mpi/coll/ialltoallw/*.lo rm -f src/mpi/coll/ibarrier/*.o rm -f src/mpi/coll/ibarrier/*.lo rm -f src/mpi/coll/ibcast/*.o rm -f src/mpi/coll/ibcast/*.lo rm -f src/mpi/coll/iexscan/*.o rm -f src/mpi/coll/iexscan/*.lo rm -f src/mpi/coll/igather/*.o rm -f src/mpi/coll/igather/*.lo rm -f src/mpi/coll/igatherv/*.o rm -f src/mpi/coll/igatherv/*.lo rm -f src/mpi/coll/ineighbor_allgather/*.o rm -f src/mpi/coll/ineighbor_allgather/*.lo rm -f src/mpi/coll/ineighbor_allgatherv/*.o rm -f src/mpi/coll/ineighbor_allgatherv/*.lo rm -f src/mpi/coll/ineighbor_alltoall/*.o rm -f src/mpi/coll/ineighbor_alltoall/*.lo rm -f src/mpi/coll/ineighbor_alltoallv/*.o rm -f src/mpi/coll/ineighbor_alltoallv/*.lo rm -f src/mpi/coll/ineighbor_alltoallw/*.o rm -f src/mpi/coll/ineighbor_alltoallw/*.lo rm -f src/mpi/coll/ireduce/*.o rm -f src/mpi/coll/ireduce/*.lo rm -f src/mpi/coll/ireduce_scatter/*.o rm -f src/mpi/coll/ireduce_scatter/*.lo rm -f src/mpi/coll/ireduce_scatter_block/*.o rm -f src/mpi/coll/ireduce_scatter_block/*.lo rm -f src/mpi/coll/iscan/*.o rm -f src/mpi/coll/iscan/*.lo rm -f src/mpi/coll/iscatter/*.o rm -f src/mpi/coll/iscatter/*.lo rm -f src/mpi/coll/iscatterv/*.o rm -f src/mpi/coll/iscatterv/*.lo rm -f src/mpi/coll/neighbor_allgather/*.o rm -f src/mpi/coll/neighbor_allgather/*.lo rm -f src/mpi/coll/neighbor_allgatherv/*.o rm -f src/mpi/coll/neighbor_allgatherv/*.lo rm -f src/mpi/coll/neighbor_alltoall/*.o rm -f src/mpi/coll/neighbor_alltoall/*.lo rm -f src/mpi/coll/neighbor_alltoallv/*.o rm -f src/mpi/coll/neighbor_alltoallv/*.lo rm -f src/mpi/coll/neighbor_alltoallw/*.o rm -f src/mpi/coll/neighbor_alltoallw/*.lo rm -f src/mpi/coll/op/*.o rm -f src/mpi/coll/op/*.lo rm -f src/mpi/coll/reduce/*.o rm -f src/mpi/coll/reduce/*.lo rm -f src/mpi/coll/reduce_local/*.o rm -f src/mpi/coll/reduce_local/*.lo rm -f src/mpi/coll/reduce_scatter/*.o rm -f src/mpi/coll/reduce_scatter/*.lo rm -f src/mpi/coll/reduce_scatter_block/*.o rm -f src/mpi/coll/reduce_scatter_block/*.lo rm -f src/mpi/coll/scan/*.o rm -f src/mpi/coll/scan/*.lo rm -f src/mpi/coll/scatter/*.o rm -f src/mpi/coll/scatter/*.lo rm -f src/mpi/coll/scatterv/*.o rm -f src/mpi/coll/scatterv/*.lo rm -f src/mpi/coll/src/*.o rm -f src/mpi/coll/src/*.lo rm -f src/mpi/coll/transports/gentran/*.o rm -f src/mpi/coll/transports/gentran/*.lo rm -f src/mpi/coll/transports/stubtran/*.o rm -f src/mpi/coll/transports/stubtran/*.lo rm -f src/mpi/comm/*.o rm -f src/mpi/comm/*.lo rm -f src/mpi/datatype/*.o rm -f src/mpi/datatype/*.lo rm -f src/mpi/datatype/dataloop/*.o rm -f src/mpi/datatype/dataloop/*.lo rm -f src/mpi/debugger/*.o rm -f src/mpi/debugger/*.lo rm -f src/mpi/errhan/*.o rm -f src/mpi/errhan/*.lo rm -f src/mpi/group/*.o rm -f src/mpi/group/*.lo rm -f src/mpi/info/*.o rm -f src/mpi/info/*.lo rm -f src/mpi/init/*.o rm -f src/mpi/init/*.lo rm -f src/mpi/misc/*.o rm -f src/mpi/misc/*.lo rm -f src/mpi/pt2pt/*.o rm -f src/mpi/pt2pt/*.lo rm -f src/mpi/request/*.o rm -f src/mpi/request/*.lo rm -f src/mpi/rma/*.o rm -f src/mpi/rma/*.lo rm -f src/mpi/spawn/*.o rm -f src/mpi/spawn/*.lo rm -f src/mpi/timer/*.o rm -f src/mpi/timer/*.lo rm -f src/mpi/topo/*.o rm -f src/mpi/topo/*.lo rm -f src/mpi_t/*.o rm -f src/mpi_t/*.lo rm -f src/mpid/ch3/channels/nemesis/netmod/llc/*.o rm -f src/mpid/ch3/channels/nemesis/netmod/llc/*.lo rm -f src/mpid/ch3/channels/nemesis/netmod/mxm/*.o rm -f src/mpid/ch3/channels/nemesis/netmod/mxm/*.lo rm -f src/mpid/ch3/channels/nemesis/netmod/none/*.o rm -f src/mpid/ch3/channels/nemesis/netmod/none/*.lo rm -f src/mpid/ch3/channels/nemesis/netmod/ofi/*.o rm -f src/mpid/ch3/channels/nemesis/netmod/ofi/*.lo rm -f src/mpid/ch3/channels/nemesis/netmod/portals4/*.o rm -f src/mpid/ch3/channels/nemesis/netmod/portals4/*.lo rm -f src/mpid/ch3/channels/nemesis/netmod/tcp/*.o rm -f src/mpid/ch3/channels/nemesis/netmod/tcp/*.lo rm -f src/mpid/ch3/channels/nemesis/src/*.o rm -f src/mpid/ch3/channels/nemesis/src/*.lo rm -f src/mpid/ch3/channels/nemesis/utils/monitor/*.o rm -f src/mpid/ch3/channels/nemesis/utils/monitor/*.lo rm -f src/mpid/ch3/channels/nemesis/utils/replacements/*.o rm -f src/mpid/ch3/channels/nemesis/utils/replacements/*.lo rm -f src/mpid/ch3/channels/sock/src/*.o rm -f src/mpid/ch3/channels/sock/src/*.lo rm -f src/mpid/ch3/src/*.o rm -f src/mpid/ch3/src/*.lo rm -f src/mpid/ch3/util/ftb/*.o rm -f src/mpid/ch3/util/ftb/*.lo rm -f src/mpid/ch3/util/sock/*.o rm -f src/mpid/ch3/util/sock/*.lo rm -f src/mpid/ch4/generic/*.o rm -f src/mpid/ch4/generic/*.lo rm -f src/mpid/ch4/netmod/ofi/*.o rm -f src/mpid/ch4/netmod/ofi/*.lo rm -f src/mpid/ch4/netmod/portals4/*.o rm -f src/mpid/ch4/netmod/portals4/*.lo rm -f src/mpid/ch4/netmod/stubnm/*.o rm -f src/mpid/ch4/netmod/stubnm/*.lo rm -f src/mpid/ch4/netmod/ucx/*.o rm -f src/mpid/ch4/netmod/ucx/*.lo rm -f src/mpid/ch4/shm/posix/*.o rm -f src/mpid/ch4/shm/posix/*.lo rm -f src/mpid/ch4/shm/src/*.o rm -f src/mpid/ch4/shm/src/*.lo rm -f src/mpid/ch4/shm/stubshm/*.o rm -f src/mpid/ch4/shm/stubshm/*.lo rm -f src/mpid/ch4/src/*.o rm -f src/mpid/ch4/src/*.lo rm -f src/mpid/common/bc/*.o rm -f src/mpid/common/bc/*.lo rm -f src/mpid/common/hcoll/*.o rm -f src/mpid/common/hcoll/*.lo rm -f src/mpid/common/sched/*.o rm -f src/mpid/common/sched/*.lo rm -f src/mpid/common/shm/*.o rm -f src/mpid/common/shm/*.lo rm -f src/mutex/*.o rm -f src/mutex/*.lo rm -f src/nameserv/file/*.o rm -f src/nameserv/file/*.lo rm -f src/nameserv/pmi/*.o rm -f src/nameserv/pmi/*.lo rm -f src/pm/gforker/*.o rm -f src/pm/remshell/*.o rm -f src/pm/util/*.o rm -f src/pm/util/*.lo rm -f src/pmi/pmi2/simple/*.o rm -f src/pmi/pmi2/simple/*.lo rm -f src/pmi/simple/*.o rm -f src/pmi/simple/*.lo rm -f src/util/assert/*.o rm -f src/util/assert/*.lo rm -f src/util/cvar/*.o rm -f src/util/cvar/*.lo rm -f src/util/logging/rlog/*.o rm -f src/util/logging/rlog/*.lo rm -f src/util/mem/*.o rm -f src/util/mem/*.lo rm -f src/util/procmap/*.o rm -f src/util/procmap/*.lo rm -f *.lo make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2' Making clean in examples make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/examples' rm -rf .libs _libs rm -f cpi rm -f *.o rm -f *.lo make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/examples'if test ! -h ./src/include/mpio.h ; then \ rm -f ./src/include/mpio.h ; \ ( cd ./src/include && \ ln -s ../mpi/romio/include/mpio.h ) ; \ fi /usr/bin/make all-recursive make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2' Making all in src/mpl make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/mpl' CC src/dbg/mpl_dbg.lo CC src/bt/mpl_bt.lo CC src/env/mpl_env.lo CC src/mem/mpl_trmem.lo CC src/msg/mpl_msg.lo CC src/sock/mpl_sockaddr.lo CC src/sock/mpl_sock.lo CC src/str/mpl_str.lo CC src/sock/mpl_host.lo CC src/str/mpl_arg_serial.lo CC src/str/mpl_argstr.lo CC src/thread/mpl_thread.lo CC src/thread/mpl_thread_win.lo CC src/thread/mpl_thread_solaris.lo CC src/thread/mpl_thread_argobots.lo CC src/timer/mpl_timer_gethrtime.lo CC src/timer/mpl_timer_clock_gettime.lo CC src/timer/mpl_timer_gcc_ia64_cycle.lo CC src/thread/mpl_thread_posix.lo CC src/timer/mpl_timer_gettimeofday.lo CC src/timer/mpl_timer_linux86_cycle.lo CC src/timer/mpl_timer_mach_absolute_time.lo CC src/timer/mpl_timer_ppc64_cycle.lo CC src/timer/mpl_timer_win86_cycle.lo CC src/timer/mpl_timer_query_performance_counter.lo CC src/timer/mpl_timer_device.lo CC src/shm/mpl_shm.lo CC src/shm/mpl_shm_sysv.lo CC src/shm/mpl_shm_mmap.lo CC src/shm/mpl_shm_win.lo CCLD libmpl.la make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/mpl' Making all in src/openpa make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa' Making all in src make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa/src' /usr/bin/make all-am make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa/src' CC opa_primitives.lo CC opa_queue.lo CCLD libopa.la make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa/src' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa/src' Making all in test make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa/test' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa/test' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa' Making all in src/hwloc make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc' Making all in include make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc/include' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc/include' Making all in hwloc make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc/hwloc' CC topology.lo CC traversal.lo CC distances.lo CC components.lo CC bind.lo CC bitmap.lo CC pci-common.lo CC diff.lo CC shmem.lo CC misc.lo CC base64.lo CC topology-noos.lo CC topology-xml-nolibxml.lo CC topology-synthetic.lo CC topology-xml.lo CC topology-linux.lo CC topology-hardwired.lo CC topology-x86.lo CCLD libhwloc_embedded.la make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc/hwloc' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc' Making all in src/mpi/romio make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/mpi/romio' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/mpi/romio' CC mpi-io/close.lo CC mpi-io/delete.lo CC mpi-io/file_c2f.lo CC mpi-io/file_f2c.lo CC mpi-io/fsync.lo CC mpi-io/get_amode.lo CC mpi-io/get_atom.lo CC mpi-io/get_bytoff.lo CC mpi-io/get_info.lo CC mpi-io/get_extent.lo CC mpi-io/get_group.lo CC mpi-io/get_posn.lo CC mpi-io/get_posn_sh.lo CC mpi-io/get_view.lo CC mpi-io/get_size.lo CC mpi-io/iread_all.lo CC mpi-io/iread.lo CC mpi-io/iread_atall.lo CC mpi-io/iread_at.lo CC mpi-io/iread_sh.lo CC mpi-io/iwrite.lo CC mpi-io/iwrite_all.lo CC mpi-io/iwrite_at.lo CC mpi-io/iwrite_atall.lo CC mpi-io/iwrite_sh.lo CC mpi-io/open.lo CC mpi-io/rd_atallb.lo CC mpi-io/prealloc.lo CC mpi-io/read.lo CC mpi-io/rd_atalle.lo CC mpi-io/read_all.lo CC mpi-io/read_allb.lo CC mpi-io/read_alle.lo CC mpi-io/read_at.lo CC mpi-io/read_atall.lo CC mpi-io/read_ord.lo CC mpi-io/read_ordb.lo CC mpi-io/read_orde.lo CC mpi-io/read_sh.lo CC mpi-io/register_datarep.lo CC mpi-io/seek.lo CC mpi-io/seek_sh.lo CC mpi-io/set_atom.lo CC mpi-io/set_info.lo CC mpi-io/set_size.lo CC mpi-io/set_view.lo CC mpi-io/wr_atallb.lo CC mpi-io/wr_atalle.lo CC mpi-io/write.lo CC mpi-io/write_all.lo CC mpi-io/write_allb.lo CC mpi-io/write_alle.lo CC mpi-io/write_at.lo CC mpi-io/write_atall.lo CC mpi-io/write_ord.lo CC mpi-io/write_ordb.lo CC mpi-io/write_orde.lo CC mpi-io/write_sh.lo CC mpi-io/glue/mpich/mpio_file.lo CC mpi-io/glue/mpich/mpio_err.lo CC mpi-io/mpich_fileutil.lo CC mpi-io/mpir-mpioinit.lo CC mpi-io/mpiu_greq.lo CC mpi-io/mpiu_external32.lo CC mpi-io/mpir_cst_filesys.lo CC adio/ad_nfs/ad_nfs_read.lo CC adio/ad_nfs/ad_nfs_open.lo CC adio/ad_nfs/ad_nfs_write.lo CC adio/ad_nfs/ad_nfs_fcntl.lo CC adio/ad_nfs/ad_nfs_done.lo CC adio/ad_nfs/ad_nfs_iread.lo CC adio/ad_nfs/ad_nfs_iwrite.lo CC adio/ad_nfs/ad_nfs_wait.lo CC adio/ad_nfs/ad_nfs_setsh.lo CC adio/ad_nfs/ad_nfs_getsh.lo CC adio/ad_nfs/ad_nfs.lo CC adio/ad_nfs/ad_nfs_resize.lo CC adio/ad_nfs/ad_nfs_features.lo CC adio/ad_testfs/ad_testfs_close.lo CC adio/ad_testfs/ad_testfs_read.lo CC adio/ad_testfs/ad_testfs_rdcoll.lo CC adio/ad_testfs/ad_testfs_wrcoll.lo CC adio/ad_testfs/ad_testfs_open.lo CC adio/ad_testfs/ad_testfs_write.lo CC adio/ad_testfs/ad_testfs_done.lo CC adio/ad_testfs/ad_testfs_fcntl.lo CC adio/ad_testfs/ad_testfs_iread.lo CC adio/ad_testfs/ad_testfs_iwrite.lo CC adio/ad_testfs/ad_testfs_wait.lo CC adio/ad_testfs/ad_testfs_flush.lo CC adio/ad_testfs/ad_testfs_seek.lo CC adio/ad_testfs/ad_testfs_resize.lo CC adio/ad_testfs/ad_testfs_hints.lo CC adio/ad_testfs/ad_testfs_delete.lo CC adio/ad_testfs/ad_testfs.lo CC adio/ad_ufs/ad_ufs.lo CC adio/ad_ufs/ad_ufs_open.lo CC adio/common/ad_aggregate.lo CC adio/common/ad_aggregate_new.lo CC adio/common/ad_close.lo CC adio/common/ad_coll_build_req_new.lo CC adio/common/ad_coll_exch_new.lo CC adio/common/ad_darray.lo CC adio/common/ad_delete.lo CC adio/common/ad_done.lo CC adio/common/ad_done_fake.lo CC adio/common/ad_end.lo CC adio/common/ad_fcntl.lo CC adio/common/ad_features.lo CC adio/common/ad_flush.lo CC adio/common/ad_fstype.lo CC adio/common/ad_get_sh_fp.lo CC adio/common/ad_hints.lo CC adio/common/ad_init.lo CC adio/common/ad_io_coll.lo CC adio/common/ad_iopen.lo CC adio/common/ad_iread.lo CC adio/common/ad_iread_coll.lo CC adio/common/ad_iread_fake.lo CC adio/common/ad_iwrite.lo CC adio/common/ad_iwrite_coll.lo CC adio/common/ad_iwrite_fake.lo CC adio/common/ad_open.lo CC adio/common/ad_opencoll.lo CC adio/common/ad_opencoll_failsafe.lo CC adio/common/ad_opencoll_scalable.lo CC adio/common/ad_prealloc.lo CC adio/common/ad_read.lo CC adio/common/ad_read_coll.lo CC adio/common/ad_read_str_naive.lo CC adio/common/ad_read_str.lo CC adio/common/ad_resize.lo CC adio/common/ad_seek.lo CC adio/common/ad_set_sh_fp.lo CC adio/common/ad_set_view.lo CC adio/common/ad_subarray.lo CC adio/common/ad_wait.lo CC adio/common/ad_wait_fake.lo CC adio/common/ad_write.lo CC adio/common/ad_write_coll.lo CC adio/common/ad_write_nolock.lo CC adio/common/ad_write_str.lo CC adio/common/ad_write_str_naive.lo CC adio/common/adi_close.lo CC adio/common/byte_offset.lo CC adio/common/cb_config_list.lo CC adio/common/eof_offset.lo CC adio/common/error.lo CC adio/common/flatten.lo CC adio/common/get_fp_posn.lo CC adio/common/greq_fns.lo CC adio/common/heap_sort.lo CC adio/common/iscontig.lo CC adio/common/lock.lo CC adio/common/malloc.lo CC adio/common/shfp_fname.lo CC adio/common/status_setb.lo CC adio/common/strfns.lo CC adio/common/system_hints.lo CC adio/common/hint_fns.lo CC adio/common/ad_threaded_io.lo CC adio/common/p2p_aggregation.lo CC adio/common/onesided_aggregation.lo CC adio/common/ad_tuning.lo CC adio/common/utils.lo CCLD libromio.la make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/mpi/romio' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/mpi/romio' Making all in src/pm/hydra make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra' Making all in mpl make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/mpl' CC src/mem/mpl_trmem.lo CC src/bt/mpl_bt.lo CC src/dbg/mpl_dbg.lo CC src/env/mpl_env.lo CC src/msg/mpl_msg.lo CC src/sock/mpl_sock.lo CC src/sock/mpl_host.lo CC src/sock/mpl_sockaddr.lo CC src/str/mpl_str.lo CC src/str/mpl_argstr.lo CC src/str/mpl_arg_serial.lo CC src/thread/mpl_thread_win.lo CC src/thread/mpl_thread_solaris.lo CC src/thread/mpl_thread.lo CC src/thread/mpl_thread_argobots.lo CC src/thread/mpl_thread_posix.lo CC src/timer/mpl_timer_clock_gettime.lo CC src/timer/mpl_timer_gcc_ia64_cycle.lo CC src/timer/mpl_timer_gethrtime.lo CC src/timer/mpl_timer_mach_absolute_time.lo CC src/timer/mpl_timer_linux86_cycle.lo CC src/timer/mpl_timer_gettimeofday.lo CC src/timer/mpl_timer_ppc64_cycle.lo CC src/timer/mpl_timer_query_performance_counter.lo CC src/shm/mpl_shm.lo CC src/timer/mpl_timer_device.lo CC src/shm/mpl_shm_sysv.lo CC src/timer/mpl_timer_win86_cycle.lo CC src/shm/mpl_shm_mmap.lo CC src/shm/mpl_shm_win.lo CCLD libmpl.la make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/mpl' Making all in tools/topo/hwloc/hwloc make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc' Making all in include make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/include' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/include' Making all in hwloc make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/hwloc' CC topology.lo CC traversal.lo CC distances.lo CC components.lo CC bind.lo CC bitmap.lo CC pci-common.lo CC diff.lo CC shmem.lo CC misc.lo CC base64.lo CC topology-noos.lo CC topology-synthetic.lo CC topology-linux.lo CC topology-xml.lo CC topology-xml-nolibxml.lo CC topology-hardwired.lo CC topology-x86.lo CCLD libhwloc_embedded.la make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/hwloc' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc' make[4]: Nothing to be done for 'all-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc' Making all in . make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra' CC tools/bootstrap/persist/hydra_persist-persist_server.o CC utils/alloc/alloc.lo CC utils/args/args.lo CC utils/launch/launch.lo CC utils/dbg/dbg.lo CC utils/env/env.lo CC utils/sock/sock.lo CC utils/others/others.lo CC utils/signals/signals.lo CC utils/string/string.lo CC tools/topo/topo.lo CC tools/topo/hwloc/topo_hwloc.lo CC tools/bootstrap/src/bsci_init.lo CC tools/bootstrap/src/bsci_finalize.lo CC tools/bootstrap/src/bsci_launch.lo CC tools/bootstrap/src/bsci_query_node_list.lo CC tools/bootstrap/src/bsci_query_proxy_id.lo CC tools/bootstrap/src/bsci_wait.lo CC tools/bootstrap/src/bsci_env.lo CC tools/bootstrap/src/bsci_query_native_int.lo CC tools/bootstrap/utils/bscu_cb.lo CC tools/bootstrap/utils/bscu_wait.lo CC tools/bootstrap/external/external_common.lo CC tools/bootstrap/external/user_init.lo CC tools/bootstrap/external/fork_init.lo CC tools/bootstrap/external/external_common_launch.lo CC tools/bootstrap/external/manual_init.lo CC tools/bootstrap/external/rsh_env.lo CC tools/bootstrap/external/ssh_init.lo CC tools/bootstrap/external/rsh_init.lo CC tools/bootstrap/external/ssh.lo CC tools/bootstrap/external/ssh_env.lo CC tools/bootstrap/external/slurm_init.lo CC tools/bootstrap/external/ssh_finalize.lo CC tools/bootstrap/external/slurm_launch.lo CC tools/bootstrap/external/slurm_env.lo CC tools/bootstrap/external/slurm_query_node_list.lo CC tools/bootstrap/external/slurm_query_native_int.lo CC tools/bootstrap/external/ll_init.lo CC tools/bootstrap/external/slurm_query_proxy_id.lo CC tools/bootstrap/external/ll_launch.lo CC tools/bootstrap/external/ll_query_native_int.lo CC tools/bootstrap/external/ll_query_node_list.lo CC tools/bootstrap/external/ll_query_proxy_id.lo CC tools/bootstrap/external/ll_env.lo CC tools/bootstrap/external/lsf_init.lo CC tools/bootstrap/external/lsf_query_native_int.lo CC tools/bootstrap/external/lsf_query_node_list.lo CC tools/bootstrap/external/lsf_env.lo CC tools/bootstrap/external/sge_init.lo CC tools/bootstrap/external/sge_query_native_int.lo CC tools/bootstrap/external/sge_query_node_list.lo CC tools/bootstrap/external/sge_env.lo CC tools/bootstrap/external/pbs_init.lo CC tools/bootstrap/external/pbs_query_native_int.lo CC tools/bootstrap/external/pbs_query_node_list.lo CC tools/bootstrap/external/cobalt_init.lo CC tools/bootstrap/external/cobalt_query_native_int.lo CC tools/bootstrap/external/cobalt_query_node_list.lo CC tools/bootstrap/persist/persist_init.lo CC tools/bootstrap/persist/persist_launch.lo CC tools/bootstrap/persist/persist_wait.lo CC tools/ckpoint/ckpoint.lo CC tools/ckpoint/blcr/ckpoint_blcr.lo CC tools/demux/demux.lo CC tools/demux/demux_poll.lo CC tools/demux/demux_select.lo CC tools/debugger/debugger.lo CC ui/utils/uiu.lo CC pm/pmiserv/pmiserv_pmi.lo CC pm/pmiserv/pmiserv_pmi_v1.lo CC pm/pmiserv/pmiserv_pmi_v2.lo CC pm/pmiserv/pmiserv_pmci.lo CC pm/pmiserv/pmiserv_cb.lo CC pm/pmiserv/pmiserv_utils.lo CC pm/pmiserv/common.lo CC pm/pmiserv/pmi_v2_common.lo CC tools/nameserver/hydra_nameserver-hydra_nameserver.o CC pm/pmiserv/hydra_pmi_proxy-pmip.o CC pm/pmiserv/hydra_pmi_proxy-pmip_cb.o CC pm/pmiserv/hydra_pmi_proxy-pmip_utils.o CC pm/pmiserv/hydra_pmi_proxy-pmip_pmi_v2.o CC pm/pmiserv/hydra_pmi_proxy-pmip_pmi_v1.o CC pm/pmiserv/hydra_pmi_proxy-common.o CC pm/pmiserv/hydra_pmi_proxy-pmi_v2_common.o CC ui/mpich/mpiexec.o CC ui/mpich/utils.o CCLD libhydra.la CCLD hydra_persist CCLD hydra_nameserver CCLD hydra_pmi_proxy CCLD libpm.la CCLD mpiexec.hydra make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra' Making all in . make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2' CC src/mpi/attr/lib_libmpi_la-attrutil.lo CC src/mpi/attr/lib_libmpi_la-dup_fn.lo CC src/mpi/coll/allgather/lib_libmpi_la-allgather_allcomm_nb.lo CC src/mpi/coll/allgather/lib_libmpi_la-allgather_intra_recursive_doubling.lo CC src/mpi/coll/allgather/lib_libmpi_la-allgather_intra_brucks.lo CC src/mpi/coll/allgather/lib_libmpi_la-allgather_intra_ring.lo CC src/mpi/coll/allgather/lib_libmpi_la-allgather_inter_local_gather_remote_bcast.lo CC src/mpi/coll/allgatherv/lib_libmpi_la-allgatherv_allcomm_nb.lo CC src/mpi/coll/allgatherv/lib_libmpi_la-allgatherv_intra_recursive_doubling.lo CC src/mpi/coll/allgatherv/lib_libmpi_la-allgatherv_intra_brucks.lo CC src/mpi/coll/allgatherv/lib_libmpi_la-allgatherv_intra_ring.lo CC src/mpi/coll/allgatherv/lib_libmpi_la-allgatherv_inter_remote_gather_local_bcast.lo CC src/mpi/coll/allreduce/lib_libmpi_la-allreduce_allcomm_nb.lo CC src/mpi/coll/allreduce/lib_libmpi_la-allreduce_intra_recursive_doubling.lo CC src/mpi/coll/allreduce/lib_libmpi_la-allreduce_intra_reduce_scatter_allgather.lo CC src/mpi/coll/allreduce/lib_libmpi_la-allreduce_intra_smp.lo CC src/mpi/coll/allreduce/lib_libmpi_la-allreduce_inter_reduce_exchange_bcast.lo CC src/mpi/coll/alltoall/lib_libmpi_la-alltoall_allcomm_nb.lo CC src/mpi/coll/alltoall/lib_libmpi_la-alltoall_intra_pairwise_sendrecv_replace.lo CC src/mpi/coll/alltoall/lib_libmpi_la-alltoall_intra_scattered.lo CC src/mpi/coll/alltoall/lib_libmpi_la-alltoall_intra_brucks.lo CC src/mpi/coll/alltoall/lib_libmpi_la-alltoall_intra_pairwise.lo CC src/mpi/coll/alltoall/lib_libmpi_la-alltoall_inter_pairwise_exchange.lo CC src/mpi/coll/alltoallv/lib_libmpi_la-alltoallv_intra_pairwise_sendrecv_replace.lo CC src/mpi/coll/alltoallv/lib_libmpi_la-alltoallv_allcomm_nb.lo CC src/mpi/coll/alltoallv/lib_libmpi_la-alltoallv_intra_scattered.lo CC src/mpi/coll/alltoallv/lib_libmpi_la-alltoallv_inter_pairwise_exchange.lo CC src/mpi/coll/alltoallw/lib_libmpi_la-alltoallw_allcomm_nb.lo CC src/mpi/coll/alltoallw/lib_libmpi_la-alltoallw_intra_pairwise_sendrecv_replace.lo CC src/mpi/coll/alltoallw/lib_libmpi_la-alltoallw_intra_scattered.lo CC src/mpi/coll/barrier/lib_libmpi_la-barrier_allcomm_nb.lo CC src/mpi/coll/alltoallw/lib_libmpi_la-alltoallw_inter_pairwise_exchange.lo CC src/mpi/coll/barrier/lib_libmpi_la-barrier_intra_dissemination.lo CC src/mpi/coll/barrier/lib_libmpi_la-barrier_intra_smp.lo CC src/mpi/coll/barrier/lib_libmpi_la-barrier_inter_bcast.lo CC src/mpi/coll/bcast/lib_libmpi_la-bcast_utils.lo CC src/mpi/coll/bcast/lib_libmpi_la-bcast_intra_binomial.lo CC src/mpi/coll/bcast/lib_libmpi_la-bcast_allcomm_nb.lo CC src/mpi/coll/bcast/lib_libmpi_la-bcast_intra_scatter_recursive_doubling_allgather.lo CC src/mpi/coll/bcast/lib_libmpi_la-bcast_intra_scatter_ring_allgather.lo CC src/mpi/coll/bcast/lib_libmpi_la-bcast_intra_smp.lo CC src/mpi/coll/bcast/lib_libmpi_la-bcast_inter_remote_send_local_bcast.lo CC src/mpi/coll/exscan/lib_libmpi_la-exscan_allcomm_nb.lo CC src/mpi/coll/exscan/lib_libmpi_la-exscan_intra_recursive_doubling.lo CC src/mpi/coll/gather/lib_libmpi_la-gather_allcomm_nb.lo CC src/mpi/coll/gather/lib_libmpi_la-gather_intra_binomial.lo CC src/mpi/coll/gather/lib_libmpi_la-gather_inter_linear.lo CC src/mpi/coll/gather/lib_libmpi_la-gather_inter_local_gather_remote_send.lo CC src/mpi/coll/gatherv/lib_libmpi_la-gatherv_allcomm_nb.lo CC src/mpi/coll/gatherv/lib_libmpi_la-gatherv_allcomm_linear.lo CC src/mpi/coll/reduce_scatter/lib_libmpi_la-reduce_scatter_allcomm_nb.lo CC src/mpi/coll/reduce_scatter/lib_libmpi_la-reduce_scatter_intra_recursive_halving.lo CC src/mpi/coll/reduce_scatter/lib_libmpi_la-reduce_scatter_intra_pairwise.lo CC src/mpi/coll/reduce_scatter/lib_libmpi_la-reduce_scatter_intra_recursive_doubling.lo CC src/mpi/coll/reduce_scatter/lib_libmpi_la-reduce_scatter_inter_remote_reduce_local_scatter.lo CC src/mpi/coll/reduce_scatter/lib_libmpi_la-reduce_scatter_intra_noncommutative.lo CC src/mpi/coll/reduce_scatter_block/lib_libmpi_la-reduce_scatter_block_allcomm_nb.lo CC src/mpi/coll/reduce_scatter_block/lib_libmpi_la-reduce_scatter_block_intra_recursive_halving.lo CC src/mpi/coll/reduce_scatter_block/lib_libmpi_la-reduce_scatter_block_intra_pairwise.lo CC src/mpi/coll/reduce_scatter_block/lib_libmpi_la-reduce_scatter_block_intra_recursive_doubling.lo CC src/mpi/coll/reduce_scatter_block/lib_libmpi_la-reduce_scatter_block_intra_noncommutative.lo CC src/mpi/coll/reduce_scatter_block/lib_libmpi_la-reduce_scatter_block_inter_remote_reduce_local_scatter.lo CC src/mpi/coll/reduce/lib_libmpi_la-reduce_allcomm_nb.lo CC src/mpi/coll/reduce/lib_libmpi_la-reduce_intra_binomial.lo CC src/mpi/coll/reduce/lib_libmpi_la-reduce_intra_reduce_scatter_gather.lo CC src/mpi/coll/reduce/lib_libmpi_la-reduce_intra_smp.lo CC src/mpi/coll/reduce/lib_libmpi_la-reduce_inter_local_reduce_remote_send.lo CC src/mpi/coll/scan/lib_libmpi_la-scan_allcomm_nb.lo CC src/mpi/coll/scan/lib_libmpi_la-scan_intra_recursive_doubling.lo CC src/mpi/coll/scan/lib_libmpi_la-scan_intra_smp.lo CC src/mpi/coll/scatter/lib_libmpi_la-scatter_allcomm_nb.lo CC src/mpi/coll/scatter/lib_libmpi_la-scatter_intra_binomial.lo CC src/mpi/coll/scatter/lib_libmpi_la-scatter_inter_linear.lo CC src/mpi/coll/scatter/lib_libmpi_la-scatter_inter_remote_send_local_scatter.lo CC src/mpi/coll/scatterv/lib_libmpi_la-scatterv_allcomm_nb.lo CC src/mpi/coll/scatterv/lib_libmpi_la-scatterv_allcomm_linear.lo CC src/mpi/coll/neighbor_allgather/lib_libmpi_la-neighbor_allgather_allcomm_nb.lo CC src/mpi/coll/neighbor_allgatherv/lib_libmpi_la-neighbor_allgatherv_allcomm_nb.lo CC src/mpi/coll/neighbor_alltoall/lib_libmpi_la-neighbor_alltoall_allcomm_nb.lo CC src/mpi/coll/neighbor_alltoallv/lib_libmpi_la-neighbor_alltoallv_allcomm_nb.lo CC src/mpi/coll/neighbor_alltoallw/lib_libmpi_la-neighbor_alltoallw_allcomm_nb.lo CC src/mpi/coll/iallgather/lib_libmpi_la-iallgather_intra_recursive_doubling.lo CC src/mpi/coll/iallgather/lib_libmpi_la-iallgather_intra_brucks.lo CC src/mpi/coll/iallgather/lib_libmpi_la-iallgather_intra_ring.lo CC src/mpi/coll/iallgather/lib_libmpi_la-iallgather_inter_local_gather_remote_bcast.lo CC src/mpi/coll/iallgather/lib_libmpi_la-iallgather_gentran_algos.lo CC src/mpi/coll/iallgather/lib_libmpi_la-iallgather_intra_recexch_distance_doubling.lo CC src/mpi/coll/iallgather/lib_libmpi_la-iallgather_intra_recexch_distance_halving.lo CC src/mpi/coll/iallgather/lib_libmpi_la-iallgather_intra_gentran_brucks.lo CC src/mpi/coll/iallgatherv/lib_libmpi_la-iallgatherv_intra_recursive_doubling.lo CC src/mpi/coll/iallgatherv/lib_libmpi_la-iallgatherv_intra_brucks.lo CC src/mpi/coll/iallgatherv/lib_libmpi_la-iallgatherv_intra_ring.lo CC src/mpi/coll/iallgatherv/lib_libmpi_la-iallgatherv_inter_remote_gather_local_bcast.lo CC src/mpi/coll/iallgatherv/lib_libmpi_la-iallgatherv_gentran_algos.lo CC src/mpi/coll/iallgatherv/lib_libmpi_la-iallgatherv_intra_recexch_distance_doubling.lo CC src/mpi/coll/iallgatherv/lib_libmpi_la-iallgatherv_intra_recexch_distance_halving.lo CC src/mpi/coll/iallgatherv/lib_libmpi_la-iallgatherv_intra_gentran_ring.lo CC src/mpi/coll/iallreduce/lib_libmpi_la-iallreduce_intra_naive.lo CC src/mpi/coll/iallreduce/lib_libmpi_la-iallreduce_intra_reduce_scatter_allgather.lo CC src/mpi/coll/iallreduce/lib_libmpi_la-iallreduce_intra_recursive_doubling.lo CC src/mpi/coll/iallreduce/lib_libmpi_la-iallreduce_intra_smp.lo CC src/mpi/coll/iallreduce/lib_libmpi_la-iallreduce_inter_remote_reduce_local_bcast.lo CC src/mpi/coll/iallreduce/lib_libmpi_la-iallreduce_gentran_algos.lo CC src/mpi/coll/iallreduce/lib_libmpi_la-iallreduce_intra_recexch_single_buffer.lo CC src/mpi/coll/iallreduce/lib_libmpi_la-iallreduce_intra_recexch_multiple_buffer.lo CC src/mpi/coll/iallreduce/lib_libmpi_la-iallreduce_intra_tree_kary.lo CC src/mpi/coll/iallreduce/lib_libmpi_la-iallreduce_intra_tree_knomial.lo CC src/mpi/coll/ialltoall/lib_libmpi_la-ialltoall_intra_inplace.lo CC src/mpi/coll/ialltoall/lib_libmpi_la-ialltoall_intra_brucks.lo CC src/mpi/coll/ialltoall/lib_libmpi_la-ialltoall_intra_permuted_sendrecv.lo CC src/mpi/coll/ialltoall/lib_libmpi_la-ialltoall_intra_pairwise.lo CC src/mpi/coll/ialltoall/lib_libmpi_la-ialltoall_inter_pairwise_exchange.lo CC src/mpi/coll/ialltoallv/lib_libmpi_la-ialltoallv_intra_inplace.lo CC src/mpi/coll/ialltoallv/lib_libmpi_la-ialltoallv_intra_blocked.lo CC src/mpi/coll/ialltoallv/lib_libmpi_la-ialltoallv_inter_pairwise_exchange.lo CC src/mpi/coll/ialltoallw/lib_libmpi_la-ialltoallw_intra_inplace.lo CC src/mpi/coll/ialltoallw/lib_libmpi_la-ialltoallw_intra_blocked.lo CC src/mpi/coll/ialltoallw/lib_libmpi_la-ialltoallw_inter_pairwise_exchange.lo CC src/mpi/coll/ibarrier/lib_libmpi_la-ibarrier_intra_recursive_doubling.lo CC src/mpi/coll/ibarrier/lib_libmpi_la-ibarrier_inter_bcast.lo CC src/mpi/coll/ibarrier/lib_libmpi_la-ibarrier_intra_recexch.lo CC src/mpi/coll/ibcast/lib_libmpi_la-ibcast_intra_binomial.lo CC src/mpi/coll/ibcast/lib_libmpi_la-ibcast_intra_scatter_ring_allgather.lo CC src/mpi/coll/ibcast/lib_libmpi_la-ibcast_intra_scatter_recursive_doubling_allgather.lo CC src/mpi/coll/ibcast/lib_libmpi_la-ibcast_intra_smp.lo CC src/mpi/coll/ibcast/lib_libmpi_la-ibcast_inter_flat.lo CC src/mpi/coll/ibcast/lib_libmpi_la-ibcast_gentran_algos.lo CC src/mpi/coll/ibcast/lib_libmpi_la-ibcast_intra_tree.lo CC src/mpi/coll/ibcast/lib_libmpi_la-ibcast_intra_scatter_recexch_allgather.lo CC src/mpi/coll/ibcast/lib_libmpi_la-ibcast_intra_ring.lo CC src/mpi/coll/ibcast/lib_libmpi_la-ibcast_utils.lo CC src/mpi/coll/iexscan/lib_libmpi_la-iexscan_intra_recursive_doubling.lo CC src/mpi/coll/igather/lib_libmpi_la-igather_intra_binomial.lo CC src/mpi/coll/igather/lib_libmpi_la-igather_inter_short.lo CC src/mpi/coll/igather/lib_libmpi_la-igather_inter_long.lo CC src/mpi/coll/igather/lib_libmpi_la-igather_gentran_algos.lo CC src/mpi/coll/igather/lib_libmpi_la-igather_intra_tree.lo CC src/mpi/coll/igatherv/lib_libmpi_la-igatherv_allcomm_linear.lo CC src/mpi/coll/ireduce_scatter/lib_libmpi_la-ireduce_scatter_intra_recursive_halving.lo CC src/mpi/coll/ireduce_scatter/lib_libmpi_la-ireduce_scatter_intra_pairwise.lo CC src/mpi/coll/ireduce_scatter/lib_libmpi_la-ireduce_scatter_intra_recursive_doubling.lo CC src/mpi/coll/ireduce_scatter/lib_libmpi_la-ireduce_scatter_intra_noncommutative.lo CC src/mpi/coll/ireduce_scatter/lib_libmpi_la-ireduce_scatter_inter_remote_reduce_local_scatterv.lo CC src/mpi/coll/ireduce_scatter/lib_libmpi_la-ireduce_scatter_gentran_algos.lo CC src/mpi/coll/ireduce_scatter/lib_libmpi_la-ireduce_scatter_intra_recexch.lo CC src/mpi/coll/ireduce_scatter_block/lib_libmpi_la-ireduce_scatter_block_intra_recursive_halving.lo CC src/mpi/coll/ireduce_scatter_block/lib_libmpi_la-ireduce_scatter_block_intra_pairwise.lo CC src/mpi/coll/ireduce_scatter_block/lib_libmpi_la-ireduce_scatter_block_intra_recursive_doubling.lo CC src/mpi/coll/ireduce_scatter_block/lib_libmpi_la-ireduce_scatter_block_intra_noncommutative.lo CC src/mpi/coll/ireduce_scatter_block/lib_libmpi_la-ireduce_scatter_block_inter_remote_reduce_local_scatterv.lo CC src/mpi/coll/ireduce_scatter_block/lib_libmpi_la-ireduce_scatter_block_gentran_algos.lo CC src/mpi/coll/ireduce_scatter_block/lib_libmpi_la-ireduce_scatter_block_intra_recexch.lo CC src/mpi/coll/ireduce/lib_libmpi_la-ireduce_intra_binomial.lo CC src/mpi/coll/ireduce/lib_libmpi_la-ireduce_intra_reduce_scatter_gather.lo CC src/mpi/coll/ireduce/lib_libmpi_la-ireduce_intra_smp.lo CC src/mpi/coll/ireduce/lib_libmpi_la-ireduce_inter_local_reduce_remote_send.lo CC src/mpi/coll/ireduce/lib_libmpi_la-ireduce_gentran_algos.lo CC src/mpi/coll/ireduce/lib_libmpi_la-ireduce_intra_tree.lo CC src/mpi/coll/ireduce/lib_libmpi_la-ireduce_intra_ring.lo CC src/mpi/coll/iscan/lib_libmpi_la-iscan_intra_recursive_doubling.lo CC src/mpi/coll/iscan/lib_libmpi_la-iscan_intra_smp.lo CC src/mpi/coll/iscatter/lib_libmpi_la-iscatter_intra_binomial.lo CC src/mpi/coll/iscatter/lib_libmpi_la-iscatter_inter_linear.lo CC src/mpi/coll/iscatter/lib_libmpi_la-iscatter_inter_remote_send_local_scatter.lo CC src/mpi/coll/iscatter/lib_libmpi_la-iscatter_gentran_algos.lo CC src/mpi/coll/iscatter/lib_libmpi_la-iscatter_intra_tree.lo CC src/mpi/coll/iscatterv/lib_libmpi_la-iscatterv_allcomm_linear.lo CC src/mpi/coll/ineighbor_allgather/lib_libmpi_la-ineighbor_allgather_allcomm_linear.lo CC src/mpi/coll/ineighbor_allgatherv/lib_libmpi_la-ineighbor_allgatherv_allcomm_linear.lo CC src/mpi/coll/ineighbor_alltoall/lib_libmpi_la-ineighbor_alltoall_allcomm_linear.lo CC src/mpi/coll/ineighbor_alltoallv/lib_libmpi_la-ineighbor_alltoallv_allcomm_linear.lo CC src/mpi/coll/ineighbor_alltoallw/lib_libmpi_la-ineighbor_alltoallw_allcomm_linear.lo CC src/mpi/coll/op/lib_libmpi_la-opsum.lo CC src/mpi/coll/op/lib_libmpi_la-opmax.lo CC src/mpi/coll/op/lib_libmpi_la-opmin.lo CC src/mpi/coll/op/lib_libmpi_la-opband.lo CC src/mpi/coll/op/lib_libmpi_la-opbor.lo CC src/mpi/coll/op/lib_libmpi_la-opbxor.lo CC src/mpi/coll/op/lib_libmpi_la-opland.lo CC src/mpi/coll/op/lib_libmpi_la-oplor.lo CC src/mpi/coll/op/lib_libmpi_la-oplxor.lo CC src/mpi/coll/op/lib_libmpi_la-opprod.lo CC src/mpi/coll/op/lib_libmpi_la-opminloc.lo CC src/mpi/coll/op/lib_libmpi_la-opmaxloc.lo CC src/mpi/coll/op/lib_libmpi_la-opno_op.lo CC src/mpi/coll/op/lib_libmpi_la-opreplace.lo CC src/mpi/comm/lib_libmpi_la-commutil.lo CC src/mpi/comm/lib_libmpi_la-contextid.lo CC src/mpi/datatype/lib_libmpi_la-typeutil.lo CC src/mpi/datatype/lib_libmpi_la-ext32_datatype.lo CC src/mpi/datatype/lib_libmpi_la-looputil.lo CC src/mpi/datatype/lib_libmpi_la-type_blockindexed.lo CC src/mpi/datatype/lib_libmpi_la-type_create_pairtype.lo CC src/mpi/datatype/lib_libmpi_la-type_debug.lo CC src/mpi/datatype/lib_libmpi_la-type_flatten.lo CC src/mpi/errhan/lib_libmpi_la-errutil.lo CC src/mpi/errhan/lib_libmpi_la-dynerrutil.lo CC src/mpi/group/lib_libmpi_la-grouputil.lo CC src/mpi/info/lib_libmpi_la-infoutil.lo CC src/mpi/init/lib_libmpi_la-initinfo.lo CC src/mpi/init/lib_libmpi_la-async.lo CC src/mpi/init/lib_libmpi_la-netloc_util.lo CC src/mpi/pt2pt/lib_libmpi_la-bsendutil.lo CC src/mpi/request/lib_libmpi_la-mpir_request.lo CC src/mpi/rma/lib_libmpi_la-winutil.lo CC src/mpi/rma/lib_libmpi_la-rmatypeutil.lo CC src/mpi/topo/lib_libmpi_la-topoutil.lo CC src/binding/fortran/mpif_h/lib_libmpi_la-fdebug.lo CC src/binding/fortran/mpif_h/lib_libmpi_la-setbot.lo F77 src/binding/fortran/mpif_h/setbotf.lo CC src/binding/fortran/use_mpi/lib_libmpi_la-create_f90_util.lo CC src/glue/romio/lib_libmpi_la-glue_romio.lo CC src/mpi_t/lib_libmpi_la-mpit.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-sendf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-recvf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-get_countf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-bsendf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ssendf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-rsendf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-bufattachf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-bufdetachf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-isendf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ibsendf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-issendf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-irsendf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-irecvf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-waitf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-testf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-request_freef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-waitanyf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-testanyf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-waitallf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-testallf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-waitsomef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-testsomef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-iprobef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-probef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-cancelf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-testcancelf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-send_initf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-bsend_initf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ssend_initf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-rsend_initf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-recv_initf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-startf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-startallf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-sendrecvf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-sndrcvrplf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typecontigf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_vectorf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_hvectorf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_indexedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_hindexedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_structf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_extentf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_sizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_lbf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_ubf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_commitf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_freef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-get_elementsf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-packf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-unpackf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-pack_sizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-barrierf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-bcastf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-gatherf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-gathervf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-scatterf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-scattervf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-allgatherf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-allgathervf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-alltoallf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-alltoallvf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-alltoallwf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-exscanf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-reducef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-op_createf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-op_freef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-allreducef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-redscatf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-scanf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-group_sizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-group_rankf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-grouptranksf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-group_comparef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_groupf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-group_unionf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-groupinterf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-groupdifff.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-group_inclf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-group_exclf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-grouprinclf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-grouprexclf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-group_freef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_sizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_rankf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_comparef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_dupf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_dup_with_infof.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_createf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_splitf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_freef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commtesticf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commrsizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commrgroupf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-iccreatef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-icmergef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-keyval_freef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-attr_putf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-attr_getf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-attr_deletef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-topo_testf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-cart_createf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-dims_createf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-graph_createf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-graphdims_getf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-graph_getf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-cartdim_getf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-cart_getf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-cart_rankf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-cart_coordsf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-grfnbcountf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-grfnbrsf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-cart_shiftf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-cart_subf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-cart_mapf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-graph_mapf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-getpnamef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-get_versionf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-get_library_versionf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-errhcreatef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-errhsetf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-errhgetf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-errhfreef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-error_stringf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-error_classf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-finalizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-initializedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-abortf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-close_portf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_acceptf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_connectf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commdiscf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commparentf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_joinf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_spawnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-spawnmultf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-lookup_namef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-open_portf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-publish_namef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-unpubnamef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_set_infof.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_get_infof.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-accumulatef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-getf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-putf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_completef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_createf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_fencef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_freef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_get_groupf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_lockf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_postf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_startf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_testf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_unlockf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_waitf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_allocatef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_allocate_sharedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_shared_queryf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_create_dynamicf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_attachf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_detachf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_get_infof.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_set_infof.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-get_accumulatef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-fetch_and_opf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-compare_and_swapf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-rputf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-rgetf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-raccumulatef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-rget_accumulatef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_lock_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_unlock_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_flushf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_flush_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_flush_localf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_flush_local_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_syncf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-adderrclassf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-adderrcodef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-adderrstringf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commcallerrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commnewkeyf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commdelattrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commfreekeyf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_get_attrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commgetnamf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_set_attrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_set_namef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-filecallerrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-greqcompletef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-greqstartf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-isthrmainf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-query_threadf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-statgetclf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-statsetelf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typenewkeyf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typedelattrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_dupf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typefreekeyf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_get_attrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typegetcntsf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typegetenvf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typegnamef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typesetattrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typesetnamef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_match_sizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-wincallerrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-winnewkeyf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-windelattrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-winfreekeyf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_get_attrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_get_namef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_set_attrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-win_set_namef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-alloc_memf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commcreerrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commgeterrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-commseterrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-filecreerrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-filegeterrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-fileseterrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-finalizedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-free_memf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-info_createf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-info_deletef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-info_dupf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-info_freef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-info_getf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-infognkf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-infognthkf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-infovallenf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-info_setf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-pack_externalf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-packesizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-reqgetstatf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typedarrayf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typechindf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typechvecf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typecindbf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_create_hindexed_blockf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typecresizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typecstructf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typecsubarrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typegetextentf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-typegtextf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-unpackextf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-wincreerrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-wingeterrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-winseterrf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-reduce_localf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-op_commutativef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-reduce_scatter_blockf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-dist_graph_create_adjacentf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-dist_graph_createf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-dist_graph_neighbors_countf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-dist_graph_neighborsf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-improbef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-imrecvf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-mprobef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-mrecvf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_idupf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ibarrierf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ibcastf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-igatherf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-igathervf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-iscatterf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-iscattervf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-iallgatherf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-iallgathervf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ialltoallf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ialltoallvf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ialltoallwf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ireducef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-iallreducef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ireduce_scatterf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ireduce_scatter_blockf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-iscanf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-iexscanf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ineighbor_allgatherf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ineighbor_allgathervf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ineighbor_alltoallf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ineighbor_alltoallvf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-ineighbor_alltoallwf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-neighbor_allgatherf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-neighbor_alltoallf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-neighbor_allgathervf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-neighbor_alltoallvf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-neighbor_alltoallwf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_split_typef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-get_elements_xf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-status_set_elements_xf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_get_extent_xf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_get_true_extent_xf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-type_size_xf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_create_groupf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_failure_ackf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_failure_get_ackedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_revokef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_shrinkf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-comm_agreef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_openf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_closef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_deletef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_set_sizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_preallocatef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_sizef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_groupf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_amodef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_set_infof.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_infof.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_set_viewf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_viewf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_atf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_at_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_atf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_at_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_iread_atf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_iwrite_atf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_readf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_writef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_ireadf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_iwritef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_seekf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_positionf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_byte_offsetf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_sharedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_sharedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_iread_sharedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_iwrite_sharedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_orderedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_orderedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_seek_sharedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_position_sharedf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_at_all_beginf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_at_all_endf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_at_all_beginf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_at_all_endf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_all_beginf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_all_endf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_all_beginf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_all_endf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_ordered_beginf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_ordered_endf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_ordered_beginf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_ordered_endf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_type_extentf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-register_datarepf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_set_atomicityf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_atomicityf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_syncf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_iread_at_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_iwrite_at_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_iread_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-file_iwrite_allf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-initf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-initthreadf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-pcontrolf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-addressf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-getaddressf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-wtimef.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-wtickf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-aint_addf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-aint_difff.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-keyval_createf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-dup_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-null_del_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-null_copy_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-dup_comm_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-null_comm_del_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-null_comm_copy_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-dup_win_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-null_win_del_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-null_win_copy_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-dup_type_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-null_type_del_fnf.lo CC src/binding/fortran/mpif_h/lib_libmpifort_la-null_type_copy_fnf.lo CC src/binding/fortran/use_mpi/lib_libmpifort_la-typef90cmplxf.lo CC src/binding/fortran/use_mpi/lib_libmpifort_la-typef90realf.lo CC src/binding/fortran/use_mpi/lib_libmpifort_la-typef90intf.lo rm -f src/binding/fortran/use_mpi/mpifnoext.h sed -e 's/^C/\!/g' -e '/EXTERNAL/d' \ -e '/REAL\*8/d' \ -e '/DOUBLE PRECISION/d' \ -e '/MPI_WTICK/d' src/binding/fortran/mpif_h/mpif.h > src/binding/fortran/use_mpi/mpifnoext.h cp -p src/env/mpicc.bash src/env/mpicc cp -p src/env/mpifort.bash src/env/mpifort cp -p src/env/mpicxx.bash src/env/mpicxx CC src/mpi/attr/lib_libmpi_la-attr_delete.lo CC src/mpi/attr/lib_libmpi_la-attr_get.lo CC src/mpi/attr/lib_libmpi_la-attr_put.lo CC src/mpi/attr/lib_libmpi_la-comm_create_keyval.lo CC src/mpi/attr/lib_libmpi_la-comm_delete_attr.lo CC src/mpi/attr/lib_libmpi_la-comm_free_keyval.lo CC src/mpi/attr/lib_libmpi_la-comm_get_attr.lo CC src/mpi/attr/lib_libmpi_la-comm_set_attr.lo CC src/mpi/attr/lib_libmpi_la-keyval_create.lo CC src/mpi/attr/lib_libmpi_la-keyval_free.lo CC src/mpi/attr/lib_libmpi_la-type_create_keyval.lo CC src/mpi/attr/lib_libmpi_la-type_delete_attr.lo CC src/mpi/attr/lib_libmpi_la-type_free_keyval.lo CC src/mpi/attr/lib_libmpi_la-type_get_attr.lo CC src/mpi/attr/lib_libmpi_la-type_set_attr.lo CC src/mpi/attr/lib_libmpi_la-win_create_keyval.lo CC src/mpi/attr/lib_libmpi_la-win_delete_attr.lo CC src/mpi/attr/lib_libmpi_la-win_free_keyval.lo CC src/mpi/attr/lib_libmpi_la-win_get_attr.lo CC src/mpi/attr/lib_libmpi_la-win_set_attr.lo CC src/mpi/coll/allgather/lib_libmpi_la-allgather.lo CC src/mpi/coll/allgatherv/lib_libmpi_la-allgatherv.lo CC src/mpi/coll/allreduce/lib_libmpi_la-allreduce.lo CC src/mpi/coll/alltoall/lib_libmpi_la-alltoall.lo CC src/mpi/coll/alltoallv/lib_libmpi_la-alltoallv.lo CC src/mpi/coll/alltoallw/lib_libmpi_la-alltoallw.lo CC src/mpi/coll/barrier/lib_libmpi_la-barrier.lo CC src/mpi/coll/bcast/lib_libmpi_la-bcast.lo CC src/mpi/coll/exscan/lib_libmpi_la-exscan.lo CC src/mpi/coll/gather/lib_libmpi_la-gather.lo CC src/mpi/coll/gatherv/lib_libmpi_la-gatherv.lo CC src/mpi/coll/reduce_scatter/lib_libmpi_la-reduce_scatter.lo CC src/mpi/coll/reduce_scatter_block/lib_libmpi_la-reduce_scatter_block.lo CC src/mpi/coll/reduce/lib_libmpi_la-reduce.lo CC src/mpi/coll/scan/lib_libmpi_la-scan.lo CC src/mpi/coll/scatter/lib_libmpi_la-scatter.lo CC src/mpi/coll/scatterv/lib_libmpi_la-scatterv.lo CC src/mpi/coll/neighbor_allgather/lib_libmpi_la-neighbor_allgather.lo CC src/mpi/coll/neighbor_allgatherv/lib_libmpi_la-neighbor_allgatherv.lo CC src/mpi/coll/neighbor_alltoall/lib_libmpi_la-neighbor_alltoall.lo CC src/mpi/coll/neighbor_alltoallv/lib_libmpi_la-neighbor_alltoallv.lo CC src/mpi/coll/neighbor_alltoallw/lib_libmpi_la-neighbor_alltoallw.lo CC src/mpi/coll/iallgather/lib_libmpi_la-iallgather.lo CC src/mpi/coll/iallgatherv/lib_libmpi_la-iallgatherv.lo CC src/mpi/coll/iallreduce/lib_libmpi_la-iallreduce.lo CC src/mpi/coll/ialltoall/lib_libmpi_la-ialltoall.lo CC src/mpi/coll/ialltoallv/lib_libmpi_la-ialltoallv.lo CC src/mpi/coll/ialltoallw/lib_libmpi_la-ialltoallw.lo CC src/mpi/coll/ibarrier/lib_libmpi_la-ibarrier.lo CC src/mpi/coll/ibcast/lib_libmpi_la-ibcast.lo CC src/mpi/coll/iexscan/lib_libmpi_la-iexscan.lo CC src/mpi/coll/igather/lib_libmpi_la-igather.lo CC src/mpi/coll/igatherv/lib_libmpi_la-igatherv.lo CC src/mpi/coll/ireduce_scatter/lib_libmpi_la-ireduce_scatter.lo CC src/mpi/coll/ireduce_scatter_block/lib_libmpi_la-ireduce_scatter_block.lo CC src/mpi/coll/ireduce/lib_libmpi_la-ireduce.lo CC src/mpi/coll/iscan/lib_libmpi_la-iscan.lo CC src/mpi/coll/iscatter/lib_libmpi_la-iscatter.lo CC src/mpi/coll/iscatterv/lib_libmpi_la-iscatterv.lo CC src/mpi/coll/ineighbor_allgather/lib_libmpi_la-ineighbor_allgather.lo CC src/mpi/coll/ineighbor_allgatherv/lib_libmpi_la-ineighbor_allgatherv.lo CC src/mpi/coll/ineighbor_alltoall/lib_libmpi_la-ineighbor_alltoall.lo CC src/mpi/coll/ineighbor_alltoallv/lib_libmpi_la-ineighbor_alltoallv.lo CC src/mpi/coll/ineighbor_alltoallw/lib_libmpi_la-ineighbor_alltoallw.lo CC src/mpi/coll/op/lib_libmpi_la-op_create.lo CC src/mpi/coll/op/lib_libmpi_la-op_free.lo CC src/mpi/coll/op/lib_libmpi_la-op_commutative.lo CC src/mpi/coll/reduce_local/lib_libmpi_la-reduce_local.lo CC src/mpi/comm/lib_libmpi_la-comm_create.lo CC src/mpi/comm/lib_libmpi_la-comm_compare.lo CC src/mpi/comm/lib_libmpi_la-comm_create_group.lo CC src/mpi/comm/lib_libmpi_la-comm_dup.lo CC src/mpi/comm/lib_libmpi_la-comm_dup_with_info.lo CC src/mpi/comm/lib_libmpi_la-comm_free.lo CC src/mpi/comm/lib_libmpi_la-comm_get_name.lo CC src/mpi/comm/lib_libmpi_la-comm_get_info.lo CC src/mpi/comm/lib_libmpi_la-comm_set_info.lo CC src/mpi/comm/lib_libmpi_la-comm_group.lo CC src/mpi/comm/lib_libmpi_la-comm_idup.lo CC src/mpi/comm/lib_libmpi_la-comm_rank.lo CC src/mpi/comm/lib_libmpi_la-comm_size.lo CC src/mpi/comm/lib_libmpi_la-comm_remote_group.lo CC src/mpi/comm/lib_libmpi_la-comm_remote_size.lo CC src/mpi/comm/lib_libmpi_la-comm_set_name.lo CC src/mpi/comm/lib_libmpi_la-comm_split.lo CC src/mpi/comm/lib_libmpi_la-comm_test_inter.lo CC src/mpi/comm/lib_libmpi_la-intercomm_create.lo CC src/mpi/comm/lib_libmpi_la-intercomm_merge.lo CC src/mpi/comm/lib_libmpi_la-comm_split_type.lo CC src/mpi/comm/lib_libmpi_la-comm_failure_ack.lo CC src/mpi/comm/lib_libmpi_la-comm_failure_get_acked.lo CC src/mpi/comm/lib_libmpi_la-comm_revoke.lo CC src/mpi/comm/lib_libmpi_la-comm_shrink.lo CC src/mpi/comm/lib_libmpi_la-comm_agree.lo CC src/mpi/datatype/lib_libmpi_la-address.lo CC src/mpi/datatype/lib_libmpi_la-get_address.lo CC src/mpi/datatype/lib_libmpi_la-get_count.lo CC src/mpi/datatype/lib_libmpi_la-get_elements.lo CC src/mpi/datatype/lib_libmpi_la-get_elements_x.lo CC src/mpi/datatype/lib_libmpi_la-pack.lo CC src/mpi/datatype/lib_libmpi_la-pack_external.lo CC src/mpi/datatype/lib_libmpi_la-pack_external_size.lo CC src/mpi/datatype/lib_libmpi_la-pack_size.lo CC src/mpi/datatype/lib_libmpi_la-status_set_elements.lo CC src/mpi/datatype/lib_libmpi_la-status_set_elements_x.lo CC src/mpi/datatype/lib_libmpi_la-type_get_name.lo CC src/mpi/datatype/lib_libmpi_la-type_set_name.lo CC src/mpi/datatype/lib_libmpi_la-type_size.lo CC src/mpi/datatype/lib_libmpi_la-type_size_x.lo CC src/mpi/datatype/lib_libmpi_la-type_extent.lo CC src/mpi/datatype/lib_libmpi_la-type_vector.lo CC src/mpi/datatype/lib_libmpi_la-type_commit.lo CC src/mpi/datatype/lib_libmpi_la-type_indexed.lo CC src/mpi/datatype/lib_libmpi_la-type_hindexed.lo CC 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src/mpi/datatype/lib_libmpi_la-type_create_hindexed_block.lo CC src/mpi/datatype/lib_libmpi_la-type_create_resized.lo CC src/mpi/datatype/lib_libmpi_la-type_create_subarray.lo CC src/mpi/datatype/lib_libmpi_la-type_create_darray.lo CC src/mpi/datatype/lib_libmpi_la-unpack.lo CC src/mpi/datatype/lib_libmpi_la-unpack_external.lo CC src/mpi/errhan/lib_libmpi_la-add_error_code.lo CC src/mpi/errhan/lib_libmpi_la-add_error_class.lo CC src/mpi/errhan/lib_libmpi_la-add_error_string.lo CC src/mpi/errhan/lib_libmpi_la-comm_call_errhandler.lo CC src/mpi/errhan/lib_libmpi_la-comm_create_errhandler.lo CC src/mpi/errhan/lib_libmpi_la-comm_get_errhandler.lo CC src/mpi/errhan/lib_libmpi_la-comm_set_errhandler.lo CC src/mpi/errhan/lib_libmpi_la-errhandler_create.lo CC src/mpi/errhan/lib_libmpi_la-errhandler_free.lo CC src/mpi/errhan/lib_libmpi_la-errhandler_get.lo CC src/mpi/errhan/lib_libmpi_la-errhandler_set.lo CC src/mpi/errhan/lib_libmpi_la-error_class.lo CC 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src/mpi/group/lib_libmpi_la-group_translate_ranks.lo CC src/mpi/group/lib_libmpi_la-group_union.lo CC src/mpi/info/lib_libmpi_la-info_create.lo CC src/mpi/info/lib_libmpi_la-info_delete.lo CC src/mpi/info/lib_libmpi_la-info_dup.lo CC src/mpi/info/lib_libmpi_la-info_free.lo CC src/mpi/info/lib_libmpi_la-info_get.lo CC src/mpi/info/lib_libmpi_la-info_getn.lo CC src/mpi/info/lib_libmpi_la-info_getnth.lo CC src/mpi/info/lib_libmpi_la-info_getvallen.lo CC src/mpi/info/lib_libmpi_la-info_set.lo CC src/mpi/init/lib_libmpi_la-abort.lo CC src/mpi/init/lib_libmpi_la-init.lo CC src/mpi/init/lib_libmpi_la-initialized.lo CC src/mpi/init/lib_libmpi_la-initthread.lo CC src/mpi/init/lib_libmpi_la-ismain.lo CC src/mpi/init/lib_libmpi_la-finalize.lo CC src/mpi/init/lib_libmpi_la-finalized.lo CC src/mpi/init/lib_libmpi_la-querythread.lo CC src/mpi/misc/lib_libmpi_la-getpname.lo CC src/mpi/misc/lib_libmpi_la-pcontrol.lo CC src/mpi/misc/lib_libmpi_la-version.lo CC 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src/mpi/topo/lib_libmpi_la-graphdimsget.lo CC src/mpi/topo/lib_libmpi_la-graphnbrcnt.lo CC src/mpi/topo/lib_libmpi_la-cartdim_get.lo CC src/mpi/topo/lib_libmpi_la-topo_test.lo CC src/mpi/topo/lib_libmpi_la-dist_gr_create_adj.lo CC src/mpi/topo/lib_libmpi_la-dist_gr_create.lo CC src/mpi/topo/lib_libmpi_la-dist_gr_neighb_count.lo CC src/mpi/topo/lib_libmpi_la-dist_gr_neighb.lo CC src/binding/fortran/mpif_h/lib_libmpi_la-statusf2c.lo CC src/binding/fortran/mpif_h/lib_libmpi_la-statusc2f.lo CC src/binding/fortran/use_mpi/lib_libmpi_la-create_f90_int.lo CC src/binding/fortran/use_mpi/lib_libmpi_la-create_f90_real.lo CC src/binding/fortran/use_mpi/lib_libmpi_la-create_f90_complex.lo CC src/glue/romio/lib_libmpi_la-all_romio_symbols.lo CC src/mutex/lib_libmpi_la-mutex_create.lo CC src/mutex/lib_libmpi_la-mutex_free.lo CC src/mutex/lib_libmpi_la-mutex_lock.lo CC src/mutex/lib_libmpi_la-mutex_unlock.lo CC src/mpi_t/lib_libmpi_la-cat_changed.lo CC src/mpi_t/lib_libmpi_la-cat_get_categories.lo CC src/mpi_t/lib_libmpi_la-cat_get_cvars.lo CC src/mpi_t/lib_libmpi_la-cat_get_info.lo CC src/mpi_t/lib_libmpi_la-cat_get_num.lo CC src/mpi_t/lib_libmpi_la-cat_get_pvars.lo CC src/mpi_t/lib_libmpi_la-cvar_get_info.lo CC src/mpi_t/lib_libmpi_la-cvar_get_num.lo CC src/mpi_t/lib_libmpi_la-cvar_handle_free.lo CC src/mpi_t/lib_libmpi_la-cvar_handle_alloc.lo CC src/mpi_t/lib_libmpi_la-cvar_read.lo CC src/mpi_t/lib_libmpi_la-cvar_write.lo CC src/mpi_t/lib_libmpi_la-enum_get_info.lo CC src/mpi_t/lib_libmpi_la-enum_get_item.lo CC src/mpi_t/lib_libmpi_la-mpit_finalize.lo CC src/mpi_t/lib_libmpi_la-mpit_initthread.lo CC src/mpi_t/lib_libmpi_la-pvar_get_info.lo CC src/mpi_t/lib_libmpi_la-pvar_get_num.lo CC src/mpi_t/lib_libmpi_la-pvar_handle_alloc.lo CC src/mpi_t/lib_libmpi_la-pvar_handle_free.lo CC src/mpi_t/lib_libmpi_la-pvar_read.lo CC src/mpi_t/lib_libmpi_la-pvar_readreset.lo CC src/mpi_t/lib_libmpi_la-pvar_reset.lo CC src/mpi_t/lib_libmpi_la-pvar_session_create.lo CC src/mpi_t/lib_libmpi_la-pvar_session_free.lo CC src/mpi_t/lib_libmpi_la-pvar_start.lo CC src/mpi_t/lib_libmpi_la-pvar_stop.lo CC src/mpi_t/lib_libmpi_la-pvar_write.lo CC src/mpi_t/lib_libmpi_la-cat_get_index.lo CC src/mpi_t/lib_libmpi_la-cvar_get_index.lo CC src/mpi_t/lib_libmpi_la-pvar_get_index.lo CC src/mpi/coll/allreduce_group/lib_libmpi_la-allreduce_group.lo CC src/mpi/coll/src/lib_libmpi_la-coll_impl.lo CC src/mpi/coll/transports/gentran/lib_libmpi_la-gentran_impl.lo CC src/mpi/coll/transports/gentran/lib_libmpi_la-gentran_utils.lo CC src/mpi/coll/transports/gentran/lib_libmpi_la-tsp_gentran.lo CC src/mpi/coll/transports/stubtran/lib_libmpi_la-stubtran_impl.lo CC src/mpi/coll/transports/stubtran/lib_libmpi_la-tsp_stubtran.lo CC src/mpi/coll/algorithms/treealgo/lib_libmpi_la-treealgo.lo CC src/mpi/coll/algorithms/treealgo/lib_libmpi_la-treeutil.lo CC src/mpi/coll/algorithms/recexchalgo/lib_libmpi_la-recexchalgo.lo CC src/mpi/coll/algorithms/stubalgo/lib_libmpi_la-stubalgo.lo CC src/mpi/coll/lib_libmpi_la-helper_fns.lo CC src/mpi/coll/lib_libmpi_la-nbcutil.lo CC src/mpi/datatype/dataloop/lib_libmpi_la-darray_support.lo CC src/mpi/datatype/dataloop/lib_libmpi_la-dataloop.lo CC src/mpi/datatype/dataloop/lib_libmpi_la-dataloop_create.lo CC src/mpi/datatype/dataloop/lib_libmpi_la-dataloop_create_blockindexed.lo CC src/mpi/datatype/dataloop/lib_libmpi_la-dataloop_create_contig.lo CC src/mpi/datatype/dataloop/lib_libmpi_la-dataloop_create_indexed.lo CC src/mpi/datatype/dataloop/lib_libmpi_la-dataloop_create_pairtype.lo CC src/mpi/datatype/dataloop/lib_libmpi_la-dataloop_create_struct.lo CC src/mpi/datatype/dataloop/lib_libmpi_la-dataloop_create_vector.lo CC src/mpi/datatype/dataloop/lib_libmpi_la-segment.lo CC src/mpi/datatype/dataloop/lib_libmpi_la-segment_count.lo CC src/mpi/datatype/dataloop/lib_libmpi_la-segment_flatten.lo CC src/mpi/datatype/dataloop/lib_libmpi_la-subarray_support.lo CC src/util/mem/lib_libmpi_la-handlemem.lo CC src/util/mem/lib_libmpi_la-strerror.lo CC src/util/cvar/lib_libmpi_la-mpir_cvars.lo CC src/util/procmap/lib_libmpi_la-local_proc.lo CC src/util/assert/lib_libmpi_la-assert.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_buffer.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_comm.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_comm_spawn_multiple.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_handle_connection.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_handle_recv_pkt.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_handle_recv_req.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_handle_revoke_pkt.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_handle_send_req.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_handle_op_req.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_port.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_recvq.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_request.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_rma_progress.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_rma_ops.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_rma_reqops.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_rma_sync.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_rma_pkthandler.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_rndv.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_eager.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_eagersync.lo CC src/mpid/ch3/src/lib_libmpi_la-ch3u_win_fns.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_abort.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_cancel_send.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_cancel_recv.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_comm_disconnect.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_comm_spawn_multiple.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_comm_failure_ack.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_comm_get_all_failed_procs.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_comm_revoke.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_finalize.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_get_universe_size.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_getpname.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_improbe.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_imrecv.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_init.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_iprobe.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_irecv.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_irsend.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_isend.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_issend.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_mprobe.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_mrecv.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_port.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_probe.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_recv.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_rsend.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_send.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_ssend.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_startall.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_vc.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_rma.lo CC src/mpid/ch3/src/lib_libmpi_la-mpidi_rma.lo CC src/mpid/ch3/src/lib_libmpi_la-mpid_aint.lo CC src/mpid/ch3/src/lib_libmpi_la-mpidi_isend_self.lo CC src/mpid/ch3/src/lib_libmpi_la-mpidi_pg.lo CC src/mpid/ch3/src/lib_libmpi_la-mpidi_printf.lo CC src/mpid/ch3/util/sock/lib_libmpi_la-ch3u_init_sock.lo CC src/mpid/ch3/util/sock/lib_libmpi_la-ch3u_connect_sock.lo CC src/mpid/ch3/util/sock/lib_libmpi_la-ch3u_getinterfaces.lo CC src/mpid/ch3/channels/sock/src/lib_libmpi_la-sock.lo CC src/mpid/ch3/channels/sock/src/lib_libmpi_la-ch3_finalize.lo CC src/mpid/ch3/channels/sock/src/lib_libmpi_la-ch3_init.lo CC src/mpid/ch3/channels/sock/src/lib_libmpi_la-ch3_isend.lo CC src/mpid/ch3/channels/sock/src/lib_libmpi_la-ch3_isendv.lo CC src/mpid/ch3/channels/sock/src/lib_libmpi_la-ch3_istartmsg.lo CC src/mpid/ch3/channels/sock/src/lib_libmpi_la-ch3_istartmsgv.lo CC src/mpid/ch3/channels/sock/src/lib_libmpi_la-ch3_progress.lo CC src/mpid/ch3/channels/sock/src/lib_libmpi_la-ch3_win_fns.lo CC src/mpid/common/sched/lib_libmpi_la-mpidu_sched.lo CC src/nameserv/pmi/lib_libmpi_la-pmi_nameserv.lo CC src/pmi/simple/lib_libmpi_la-simple_pmiutil.lo CC src/pmi/simple/lib_libmpi_la-simple_pmi.lo MOD src/binding/fortran/use_mpi/mpi_constants.mod-stamp MOD src/binding/fortran/use_mpi/mpi_sizeofs.mod-stamp CXX src/binding/cxx/initcxx.lo CC src/env/mpichversion.o CC src/env/mpivars.o MOD src/binding/fortran/use_mpi/mpi_base.mod-stamp MOD src/binding/fortran/use_mpi/mpi.mod-stamp GEN lib/libmpi.la CXXLD lib/libmpicxx.la GEN lib/libmpifort.la CCLD src/env/mpichversion CCLD src/env/mpivars make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2' Making all in examples make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/examples' CC cpi.o CCLD cpi make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/examples' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2'/usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/make install-recursive make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2' Making install in src/mpl make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/mpl' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/mpl' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/mpl' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/mpl' Making install in src/openpa make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa' Making install in src make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa/src' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa/src' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa/src' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa/src' Making install in test make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa/test' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa/test' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa/test' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa/test' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/pkgconfig' /usr/bin/install -c -m 644 openpa.pc '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/pkgconfig' make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/openpa' Making install in src/hwloc make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc' Making install in include make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc/include' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc/include' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc/include' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc/include' Making install in hwloc make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc/hwloc' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc/hwloc' /usr/bin/make install-exec-hook make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc/hwloc' make[5]: Nothing to be done for 'install-exec-hook'. make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc/hwloc' make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc/hwloc' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc/hwloc' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/hwloc' Making install in src/mpi/romio make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/mpi/romio' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/mpi/romio' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/mpi/romio' mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include' /usr/bin/install -c -m 644 include/mpio.h include/mpiof.h '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include' make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/mpi/romio' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/mpi/romio' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/mpi/romio' Making install in src/pm/hydra make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra' Making install in mpl make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/mpl' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/mpl' make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/mpl' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/mpl' Making install in tools/topo/hwloc/hwloc make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc' Making install in include make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/include' make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/include' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/include' make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/include' Making install in hwloc make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/hwloc' make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/hwloc' /usr/bin/make install-exec-hook make[6]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/hwloc' make[6]: Nothing to be done for 'install-exec-hook'. make[6]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/hwloc' make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/hwloc' make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc/hwloc' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc' make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc' make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra/tools/topo/hwloc/hwloc' Making install in . make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra' mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' /bin/bash ./libtool --mode=install /usr/bin/install -c hydra_persist hydra_nameserver hydra_pmi_proxy mpiexec.hydra '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' libtool: install: /usr/bin/install -c hydra_persist /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/hydra_persist libtool: install: /usr/bin/install -c hydra_nameserver /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/hydra_nameserver libtool: install: /usr/bin/install -c hydra_pmi_proxy /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/hydra_pmi_proxy libtool: install: /usr/bin/install -c mpiexec.hydra /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpiexec.hydra /usr/bin/make install-exec-hook make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra' if [ -x /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpiexec.hydra ] ; then \ cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin && ln -f -s mpiexec.hydra mpiexec ; \ cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin && ln -f -s mpiexec.hydra mpirun ; \ fi make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra' make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/src/pm/hydra' Making install in . make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2' mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib' /bin/bash ./libtool --mode=install /usr/bin/install -c lib/libmpi.la lib/libmpifort.la lib/libmpicxx.la '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib' libtool: install: /usr/bin/install -c lib/.libs/libmpi.so.12.1.8 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpi.so.12.1.8 libtool: install: (cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib && { ln -s -f libmpi.so.12.1.8 libmpi.so.12 || { rm -f libmpi.so.12 && ln -s libmpi.so.12.1.8 libmpi.so.12; }; }) libtool: install: (cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib && { ln -s -f libmpi.so.12.1.8 libmpi.so || { rm -f libmpi.so && ln -s libmpi.so.12.1.8 libmpi.so; }; }) libtool: install: /usr/bin/install -c lib/.libs/libmpi.lai /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpi.la libtool: install: (cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2; /bin/bash "/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/libtool" --silent --tag FC --mode=relink gfortran -Isrc/binding/fortran/use_mpi -fPIC -ffree-line-length-0 -O3 -O2 -version-info 13:8:1 -o lib/libmpifort.la -rpath /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib src/binding/fortran/mpif_h/lib_libmpifort_la-sendf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-recvf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-get_countf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-bsendf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-ssendf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-rsendf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-bufattachf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-bufdetachf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-isendf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-ibsendf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-issendf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-irsendf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-irecvf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-waitf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-testf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-request_freef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-waitanyf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-testanyf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-waitallf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-testallf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-waitsomef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-testsomef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-iprobef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-probef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-cancelf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-testcancelf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-send_initf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-bsend_initf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-ssend_initf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-rsend_initf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-recv_initf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-startf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-startallf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-sendrecvf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-sndrcvrplf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-typecontigf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_vectorf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_hvectorf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_indexedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_hindexedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_structf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_extentf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_sizef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_lbf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_ubf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_commitf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_freef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-get_elementsf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-packf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-unpackf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-pack_sizef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-barrierf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-bcastf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-gatherf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-gathervf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-scatterf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-scattervf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-allgatherf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-allgathervf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-alltoallf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-alltoallvf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-alltoallwf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-exscanf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-reducef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-op_createf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-op_freef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-allreducef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-redscatf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-scanf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-group_sizef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-group_rankf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-grouptranksf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-group_comparef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_groupf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-group_unionf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-groupinterf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-groupdifff.lo src/binding/fortran/mpif_h/lib_libmpifort_la-group_inclf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-group_exclf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-grouprinclf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-grouprexclf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-group_freef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_sizef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_rankf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_comparef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_dupf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_dup_with_infof.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_createf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_splitf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_freef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-commtesticf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-commrsizef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-commrgroupf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-iccreatef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-icmergef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-keyval_freef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-attr_putf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-attr_getf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-attr_deletef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-topo_testf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-cart_createf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-dims_createf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-graph_createf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-graphdims_getf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-graph_getf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-cartdim_getf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-cart_getf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-cart_rankf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-cart_coordsf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-grfnbcountf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-grfnbrsf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-cart_shiftf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-cart_subf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-cart_mapf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-graph_mapf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-getpnamef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-get_versionf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-get_library_versionf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-errhcreatef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-errhsetf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-errhgetf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-errhfreef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-error_stringf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-error_classf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-finalizef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-initializedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-abortf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-close_portf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_acceptf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_connectf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-commdiscf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-commparentf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_joinf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_spawnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-spawnmultf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-lookup_namef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-open_portf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-publish_namef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-unpubnamef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_set_infof.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_get_infof.lo src/binding/fortran/mpif_h/lib_libmpifort_la-accumulatef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-getf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-putf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-win_completef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-win_createf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-win_fencef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-win_freef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-win_get_groupf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-win_lockf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-win_postf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-win_startf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-win_testf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-win_unlockf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-win_waitf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-win_allocatef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-win_allocate_sharedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-win_shared_queryf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-win_create_dynamicf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-win_attachf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-win_detachf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-win_get_infof.lo src/binding/fortran/mpif_h/lib_libmpifort_la-win_set_infof.lo src/binding/fortran/mpif_h/lib_libmpifort_la-get_accumulatef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-fetch_and_opf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-compare_and_swapf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-rputf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-rgetf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-raccumulatef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-rget_accumulatef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-win_lock_allf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-win_unlock_allf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-win_flushf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-win_flush_allf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-win_flush_localf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-win_flush_local_allf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-win_syncf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-adderrclassf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-adderrcodef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-adderrstringf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-commcallerrf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-commnewkeyf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-commdelattrf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-commfreekeyf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_get_attrf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-commgetnamf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_set_attrf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_set_namef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-filecallerrf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-greqcompletef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-greqstartf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-isthrmainf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-query_threadf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-statgetclf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-statsetelf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-typenewkeyf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-typedelattrf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_dupf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-typefreekeyf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_get_attrf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-typegetcntsf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-typegetenvf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-typegnamef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-typesetattrf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-typesetnamef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_match_sizef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-wincallerrf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-winnewkeyf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-windelattrf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-winfreekeyf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-win_get_attrf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-win_get_namef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-win_set_attrf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-win_set_namef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-alloc_memf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-commcreerrf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-commgeterrf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-commseterrf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-filecreerrf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-filegeterrf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-fileseterrf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-finalizedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-free_memf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-info_createf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-info_deletef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-info_dupf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-info_freef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-info_getf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-infognkf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-infognthkf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-infovallenf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-info_setf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-pack_externalf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-packesizef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-reqgetstatf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-typedarrayf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-typechindf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-typechvecf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-typecindbf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_create_hindexed_blockf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-typecresizef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-typecstructf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-typecsubarrf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-typegetextentf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-typegtextf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-unpackextf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-wincreerrf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-wingeterrf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-winseterrf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-reduce_localf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-op_commutativef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-reduce_scatter_blockf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-dist_graph_create_adjacentf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-dist_graph_createf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-dist_graph_neighbors_countf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-dist_graph_neighborsf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-improbef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-imrecvf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-mprobef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-mrecvf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_idupf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-ibarrierf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-ibcastf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-igatherf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-igathervf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-iscatterf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-iscattervf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-iallgatherf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-iallgathervf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-ialltoallf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-ialltoallvf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-ialltoallwf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-ireducef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-iallreducef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-ireduce_scatterf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-ireduce_scatter_blockf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-iscanf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-iexscanf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-ineighbor_allgatherf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-ineighbor_allgathervf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-ineighbor_alltoallf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-ineighbor_alltoallvf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-ineighbor_alltoallwf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-neighbor_allgatherf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-neighbor_allgathervf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-neighbor_alltoallf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-neighbor_alltoallvf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-neighbor_alltoallwf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_split_typef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-get_elements_xf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-status_set_elements_xf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_get_extent_xf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_get_true_extent_xf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-type_size_xf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_create_groupf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_failure_ackf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_failure_get_ackedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_revokef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_shrinkf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-comm_agreef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_openf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_closef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_deletef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_set_sizef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_preallocatef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_sizef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_groupf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_amodef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_set_infof.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_infof.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_set_viewf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_viewf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_atf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_at_allf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_atf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_at_allf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_iread_atf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_iwrite_atf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_readf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_allf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_writef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_allf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_ireadf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_iwritef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_seekf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_positionf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_byte_offsetf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_sharedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_sharedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_iread_sharedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_iwrite_sharedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_orderedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_orderedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_seek_sharedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_position_sharedf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_at_all_beginf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_at_all_endf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_at_all_beginf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_at_all_endf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_all_beginf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_all_endf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_all_beginf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_all_endf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_ordered_beginf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_read_ordered_endf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_ordered_beginf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_write_ordered_endf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_type_extentf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-register_datarepf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_set_atomicityf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_get_atomicityf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_syncf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_iread_at_allf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_iwrite_at_allf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_iread_allf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-file_iwrite_allf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-initf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-initthreadf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-pcontrolf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-addressf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-getaddressf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-wtimef.lo src/binding/fortran/mpif_h/lib_libmpifort_la-wtickf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-aint_addf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-aint_difff.lo src/binding/fortran/mpif_h/lib_libmpifort_la-keyval_createf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-dup_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-null_del_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-null_copy_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-dup_comm_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-null_comm_del_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-null_comm_copy_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-dup_win_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-null_win_del_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-null_win_copy_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-dup_type_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-null_type_del_fnf.lo src/binding/fortran/mpif_h/lib_libmpifort_la-null_type_copy_fnf.lo src/binding/fortran/use_mpi/lib_libmpifort_la-typef90cmplxf.lo src/binding/fortran/use_mpi/lib_libmpifort_la-typef90realf.lo src/binding/fortran/use_mpi/lib_libmpifort_la-typef90intf.lo src/binding/fortran/use_mpi/mpi.lo src/binding/fortran/use_mpi/mpi_constants.lo src/binding/fortran/use_mpi/mpi_sizeofs.lo src/binding/fortran/use_mpi/mpi_base.lo lib/libmpi.la ) libtool: install: /usr/bin/install -c lib/.libs/libmpifort.so.12.1.8T /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpifort.so.12.1.8 libtool: install: (cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib && { ln -s -f libmpifort.so.12.1.8 libmpifort.so.12 || { rm -f libmpifort.so.12 && ln -s libmpifort.so.12.1.8 libmpifort.so.12; }; }) libtool: install: (cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib && { ln -s -f libmpifort.so.12.1.8 libmpifort.so || { rm -f libmpifort.so && ln -s libmpifort.so.12.1.8 libmpifort.so; }; }) libtool: install: /usr/bin/install -c lib/.libs/libmpifort.lai /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpifort.la libtool: install: (cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2; /bin/bash "/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/libtool" --silent --tag CXX --mode=relink g++ -fstack-protector -O3 -fPIC -std=gnu++11 -O2 -version-info 13:8:1 -o lib/libmpicxx.la -rpath /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib src/binding/cxx/initcxx.lo lib/libmpi.la ) libtool: install: /usr/bin/install -c lib/.libs/libmpicxx.so.12.1.8T /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpicxx.so.12.1.8 libtool: install: (cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib && { ln -s -f libmpicxx.so.12.1.8 libmpicxx.so.12 || { rm -f libmpicxx.so.12 && ln -s libmpicxx.so.12.1.8 libmpicxx.so.12; }; }) libtool: install: (cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib && { ln -s -f libmpicxx.so.12.1.8 libmpicxx.so || { rm -f libmpicxx.so && ln -s libmpicxx.so.12.1.8 libmpicxx.so; }; }) libtool: install: /usr/bin/install -c lib/.libs/libmpicxx.lai /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpicxx.la libtool: install: /usr/bin/install -c lib/.libs/libmpi.a /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpi.a libtool: install: chmod 644 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpi.a libtool: install: ranlib /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpi.a libtool: install: /usr/bin/install -c lib/.libs/libmpifort.a /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpifort.a libtool: install: chmod 644 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpifort.a libtool: install: ranlib /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpifort.a libtool: install: /usr/bin/install -c lib/.libs/libmpicxx.a /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpicxx.a libtool: install: chmod 644 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpicxx.a libtool: install: ranlib /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpicxx.a libtool: finish: PATH="/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin:/home/dsu/Soft/PETSc/petsc-3.10.5/linux-gnu-opt/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/home/dsu/Soft/Paraview/ParaView-5.5.0/bin:/home/dsu/Soft/VisIt/visit2_13_0.linux-x86_64/bin:/home/dsu/Soft/Intel/parallel_studio_2019/bin:/home/dsu/Soft/Paraview/ParaView-5.5.0/bin:/home/dsu/Soft/VisIt/visit2_13_0.linux-x86_64/bin:/home/dsu/Soft/Intel/parallel_studio_2019/bin:/sbin" ldconfig -n /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the '-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the 'LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the 'LD_RUN_PATH' environment variable during linking - use the '-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to '/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' /bin/bash ./libtool --mode=install /usr/bin/install -c src/env/mpichversion src/env/mpivars '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' libtool: install: /usr/bin/install -c src/env/.libs/mpichversion /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpichversion libtool: install: /usr/bin/install -c src/env/.libs/mpivars /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpivars mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' /usr/bin/install -c src/env/mpicc src/env/parkill src/env/mpifort src/env/mpicxx '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' /usr/bin/make install-exec-hook make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2' for e in /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx \ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif77 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpifort ; do \ if test -e ${e} ; then \ sed -e 's|__PREFIX_TO_BE_FILLED_AT_INSTALL_TIME__|/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt|g' \ -e 's|__EXEC_PREFIX_TO_BE_FILLED_AT_INSTALL_TIME__|/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt|g' \ -e 's|__SYSCONFDIR_TO_BE_FILLED_AT_INSTALL_TIME__|/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/etc|g' \ -e 's|__INCLUDEDIR_TO_BE_FILLED_AT_INSTALL_TIME__|/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include|g' \ -e 's|__LIBDIR_TO_BE_FILLED_AT_INSTALL_TIME__|/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib|g' ${e} > ${e}.tmp ; \ /usr/bin/install -c ${e}.tmp ${e} ; \ rm -f ${e}.tmp ; \ fi ; \ done ; \ if test -e /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx ; then \ if test "mpicxx" != "mpic++" ; then \ cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin && ln -f -s mpicxx mpic++ ; \ fi ; \ fi ; \ if test -e /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpifort ; then \ if test "mpifort" != "mpif90" ; then \ cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin && ln -f -s mpifort mpif90 ; \ fi ; \ fi ; \ if test -e /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpifort -a ! -e /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif77 ; then \ if test "mpifort" != "mpif77" ; then \ cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin && ln -f -s mpifort mpif77 ; \ fi ; \ fi ; \ if test -e /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpi.so ; then \ if test "mpi" != "mpl" ; then \ cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib && ln -f -s libmpi.so libmpl.so ; \ fi ; \ if test "mpi" != "opa" ; then \ cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib && ln -f -s libmpi.so libopa.so ; \ fi ; \ if test "mpi" != "mpich" ; then \ cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib && ln -f -s libmpi.so libmpich.so ; \ fi ; \ fi ; \ if test -e /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpifort.so ; then \ if test "mpifort" != "fmpich" ; then \ cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib && ln -f -s libmpifort.so libfmpich.so ; \ fi ; \ if test "mpifort" != "mpichf90" ; then \ cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib && ln -f -s libmpifort.so libmpichf90.so ; \ fi ; \ fi ; \ if test -e /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpicxx.so ; then \ if test "mpicxx" != "mpichcxx" ; then \ cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib && ln -f -s libmpicxx.so libmpichcxx.so ; \ fi ; \ fi make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2' /usr/bin/install -c -m 644 hydra_nameserver.1 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man1/hydra_nameserver.1 /usr/bin/install -c -m 644 hydra_persist.1 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man1/hydra_persist.1 /usr/bin/install -c -m 644 hydra_pmi_proxy.1 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man1/hydra_pmi_proxy.1 /usr/bin/install -c -m 644 mpicc.1 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man1/mpicc.1 /usr/bin/install -c -m 644 mpicxx.1 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man1/mpicxx.1 /usr/bin/install -c -m 644 mpiexec.1 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man1/mpiexec.1 /usr/bin/install -c -m 644 mpif77.1 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man1/mpif77.1 /usr/bin/install -c -m 644 mpifort.1 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man1/mpifort.1 /usr/bin/install -c -m 644 Constants.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/Constants.3 /usr/bin/install -c -m 644 MPI_Abort.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Abort.3 /usr/bin/install -c -m 644 MPI_Accumulate.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Accumulate.3 /usr/bin/install -c -m 644 MPI_Add_error_class.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Add_error_class.3 /usr/bin/install -c -m 644 MPI_Add_error_code.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Add_error_code.3 /usr/bin/install -c -m 644 MPI_Add_error_string.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Add_error_string.3 /usr/bin/install -c -m 644 MPI_Address.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Address.3 /usr/bin/install -c -m 644 MPI_Aint_add.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Aint_add.3 /usr/bin/install -c -m 644 MPI_Aint_diff.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Aint_diff.3 /usr/bin/install -c -m 644 MPI_Allgather.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Allgather.3 /usr/bin/install -c -m 644 MPI_Allgatherv.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Allgatherv.3 /usr/bin/install -c -m 644 MPI_Alloc_mem.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Alloc_mem.3 /usr/bin/install -c -m 644 MPI_Allreduce.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Allreduce.3 /usr/bin/install -c -m 644 MPI_Alltoall.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Alltoall.3 /usr/bin/install -c -m 644 MPI_Alltoallv.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Alltoallv.3 /usr/bin/install -c -m 644 MPI_Alltoallw.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Alltoallw.3 /usr/bin/install -c -m 644 MPI_Attr_delete.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Attr_delete.3 /usr/bin/install -c -m 644 MPI_Attr_get.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Attr_get.3 /usr/bin/install -c -m 644 MPI_Attr_put.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Attr_put.3 /usr/bin/install -c -m 644 MPI_Barrier.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Barrier.3 /usr/bin/install -c -m 644 MPI_Bcast.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Bcast.3 /usr/bin/install -c -m 644 MPI_Bsend.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Bsend.3 /usr/bin/install -c -m 644 MPI_Bsend_init.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Bsend_init.3 /usr/bin/install -c -m 644 MPI_Buffer_attach.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Buffer_attach.3 /usr/bin/install -c -m 644 MPI_Buffer_detach.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Buffer_detach.3 /usr/bin/install -c -m 644 MPI_Cancel.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Cancel.3 /usr/bin/install -c -m 644 MPI_Cart_coords.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Cart_coords.3 /usr/bin/install -c -m 644 MPI_Cart_create.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Cart_create.3 /usr/bin/install -c -m 644 MPI_Cartdim_get.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Cartdim_get.3 /usr/bin/install -c -m 644 MPI_Cart_get.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Cart_get.3 /usr/bin/install -c -m 644 MPI_Cart_map.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Cart_map.3 /usr/bin/install -c -m 644 MPI_Cart_rank.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Cart_rank.3 /usr/bin/install -c -m 644 MPI_Cart_shift.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Cart_shift.3 /usr/bin/install -c -m 644 MPI_Cart_sub.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Cart_sub.3 /usr/bin/install -c -m 644 MPI_Close_port.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Close_port.3 /usr/bin/install -c -m 644 MPI_Comm_accept.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Comm_accept.3 /usr/bin/install -c -m 644 MPI_Comm_call_errhandler.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Comm_call_errhandler.3 /usr/bin/install -c -m 644 MPI_Comm_compare.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Comm_compare.3 /usr/bin/install -c -m 644 MPI_Comm_connect.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Comm_connect.3 /usr/bin/install -c -m 644 MPI_Comm_create.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Comm_create.3 /usr/bin/install -c -m 644 MPI_Comm_create_errhandler.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Comm_create_errhandler.3 /usr/bin/install -c -m 644 MPI_Comm_create_group.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Comm_create_group.3 /usr/bin/install -c -m 644 MPI_Comm_create_keyval.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Comm_create_keyval.3 /usr/bin/install -c -m 644 MPI_Comm_delete_attr.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Comm_delete_attr.3 /usr/bin/install -c -m 644 MPI_Comm_disconnect.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Comm_disconnect.3 /usr/bin/install -c -m 644 MPI_Comm_dup.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Comm_dup.3 /usr/bin/install -c -m 644 MPI_Comm_dup_with_info.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Comm_dup_with_info.3 /usr/bin/install -c -m 644 MPI_Comm_free.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Comm_free.3 /usr/bin/install -c -m 644 MPI_Comm_free_keyval.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Comm_free_keyval.3 /usr/bin/install -c -m 644 MPI_Comm_get_attr.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Comm_get_attr.3 /usr/bin/install -c -m 644 MPI_Comm_get_errhandler.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Comm_get_errhandler.3 /usr/bin/install -c -m 644 MPI_Comm_get_info.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Comm_get_info.3 /usr/bin/install -c -m 644 MPI_Comm_get_name.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Comm_get_name.3 /usr/bin/install -c -m 644 MPI_Comm_get_parent.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Comm_get_parent.3 /usr/bin/install -c -m 644 MPI_Comm_group.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Comm_group.3 /usr/bin/install -c -m 644 MPI_Comm_idup.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Comm_idup.3 /usr/bin/install -c -m 644 MPI_Comm_join.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Comm_join.3 /usr/bin/install -c -m 644 MPI_Comm_rank.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Comm_rank.3 /usr/bin/install -c -m 644 MPI_Comm_remote_group.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Comm_remote_group.3 /usr/bin/install -c -m 644 MPI_Comm_remote_size.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Comm_remote_size.3 /usr/bin/install -c -m 644 MPI_Comm_set_attr.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Comm_set_attr.3 /usr/bin/install -c -m 644 MPI_Comm_set_errhandler.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Comm_set_errhandler.3 /usr/bin/install -c -m 644 MPI_Comm_set_info.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Comm_set_info.3 /usr/bin/install -c -m 644 MPI_Comm_set_name.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Comm_set_name.3 /usr/bin/install -c -m 644 MPI_Comm_size.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Comm_size.3 /usr/bin/install -c -m 644 MPI_Comm_spawn.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Comm_spawn.3 /usr/bin/install -c -m 644 MPI_Comm_spawn_multiple.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Comm_spawn_multiple.3 /usr/bin/install -c -m 644 MPI_Comm_split.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Comm_split.3 /usr/bin/install -c -m 644 MPI_Comm_split_type.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Comm_split_type.3 /usr/bin/install -c -m 644 MPI_Comm_test_inter.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Comm_test_inter.3 /usr/bin/install -c -m 644 MPI_Compare_and_swap.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Compare_and_swap.3 /usr/bin/install -c -m 644 MPI_Dims_create.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Dims_create.3 /usr/bin/install -c -m 644 MPI_Dist_graph_create.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Dist_graph_create.3 /usr/bin/install -c -m 644 MPI_Dist_graph_create_adjacent.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Dist_graph_create_adjacent.3 /usr/bin/install -c -m 644 MPI_Dist_graph_neighbors.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Dist_graph_neighbors.3 /usr/bin/install -c -m 644 MPI_Dist_graph_neighbors_count.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Dist_graph_neighbors_count.3 /usr/bin/install -c -m 644 MPI_Errhandler_create.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Errhandler_create.3 /usr/bin/install -c -m 644 MPI_Errhandler_free.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Errhandler_free.3 /usr/bin/install -c -m 644 MPI_Errhandler_get.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Errhandler_get.3 /usr/bin/install -c -m 644 MPI_Errhandler_set.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Errhandler_set.3 /usr/bin/install -c -m 644 MPI_Error_class.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Error_class.3 /usr/bin/install -c -m 644 MPI_Error_string.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Error_string.3 /usr/bin/install -c -m 644 MPI_Exscan.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Exscan.3 /usr/bin/install -c -m 644 MPI_Fetch_and_op.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Fetch_and_op.3 /usr/bin/install -c -m 644 MPI_File_c2f.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_c2f.3 /usr/bin/install -c -m 644 MPI_File_call_errhandler.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_call_errhandler.3 /usr/bin/install -c -m 644 MPI_File_close.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_close.3 /usr/bin/install -c -m 644 MPI_File_create_errhandler.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_create_errhandler.3 /usr/bin/install -c -m 644 MPI_File_delete.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_delete.3 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/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_get_position.3 /usr/bin/install -c -m 644 MPI_File_get_position_shared.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_get_position_shared.3 /usr/bin/install -c -m 644 MPI_File_get_size.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_get_size.3 /usr/bin/install -c -m 644 MPI_File_get_type_extent.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_get_type_extent.3 /usr/bin/install -c -m 644 MPI_File_get_view.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_get_view.3 /usr/bin/install -c -m 644 MPI_File_iread.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_iread.3 /usr/bin/install -c -m 644 MPI_File_iread_all.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_iread_all.3 /usr/bin/install -c -m 644 MPI_File_iread_at.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_iread_at.3 /usr/bin/install -c -m 644 MPI_File_iread_at_all.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_iread_at_all.3 /usr/bin/install -c -m 644 MPI_File_iread_shared.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_iread_shared.3 /usr/bin/install -c -m 644 MPI_File_iwrite.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_iwrite.3 /usr/bin/install -c -m 644 MPI_File_iwrite_all.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_iwrite_all.3 /usr/bin/install -c -m 644 MPI_File_iwrite_at.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_iwrite_at.3 /usr/bin/install -c -m 644 MPI_File_iwrite_at_all.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_iwrite_at_all.3 /usr/bin/install -c -m 644 MPI_File_iwrite_shared.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_iwrite_shared.3 /usr/bin/install -c -m 644 MPI_File_open.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_open.3 /usr/bin/install -c -m 644 MPI_File_preallocate.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_preallocate.3 /usr/bin/install -c -m 644 MPI_File_read.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_read.3 /usr/bin/install -c -m 644 MPI_File_read_all.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_read_all.3 /usr/bin/install -c -m 644 MPI_File_read_all_begin.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_read_all_begin.3 /usr/bin/install -c -m 644 MPI_File_read_all_end.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_read_all_end.3 /usr/bin/install -c -m 644 MPI_File_read_at.3 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/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_read_shared.3 /usr/bin/install -c -m 644 MPI_File_seek.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_seek.3 /usr/bin/install -c -m 644 MPI_File_seek_shared.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_seek_shared.3 /usr/bin/install -c -m 644 MPI_File_set_atomicity.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_set_atomicity.3 /usr/bin/install -c -m 644 MPI_File_set_errhandler.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_set_errhandler.3 /usr/bin/install -c -m 644 MPI_File_set_info.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_set_info.3 /usr/bin/install -c -m 644 MPI_File_set_size.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_set_size.3 /usr/bin/install -c -m 644 MPI_File_set_view.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_set_view.3 /usr/bin/install -c -m 644 MPI_File_sync.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_sync.3 /usr/bin/install -c -m 644 MPI_File_write.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_write.3 /usr/bin/install -c -m 644 MPI_File_write_all.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_write_all.3 /usr/bin/install -c -m 644 MPI_File_write_all_begin.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_write_all_begin.3 /usr/bin/install -c -m 644 MPI_File_write_all_end.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_write_all_end.3 /usr/bin/install -c -m 644 MPI_File_write_at.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_write_at.3 /usr/bin/install -c -m 644 MPI_File_write_at_all.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_write_at_all.3 /usr/bin/install -c -m 644 MPI_File_write_at_all_begin.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_write_at_all_begin.3 /usr/bin/install -c -m 644 MPI_File_write_at_all_end.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_write_at_all_end.3 /usr/bin/install -c -m 644 MPI_File_write_ordered.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_write_ordered.3 /usr/bin/install -c -m 644 MPI_File_write_ordered_begin.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_write_ordered_begin.3 /usr/bin/install -c -m 644 MPI_File_write_ordered_end.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_write_ordered_end.3 /usr/bin/install -c -m 644 MPI_File_write_shared.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_File_write_shared.3 /usr/bin/install -c -m 644 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/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Graphdims_get.3 /usr/bin/install -c -m 644 MPI_Graph_get.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Graph_get.3 /usr/bin/install -c -m 644 MPI_Graph_map.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Graph_map.3 /usr/bin/install -c -m 644 MPI_Graph_neighbors.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Graph_neighbors.3 /usr/bin/install -c -m 644 MPI_Graph_neighbors_count.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Graph_neighbors_count.3 /usr/bin/install -c -m 644 MPI_Grequest_complete.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Grequest_complete.3 /usr/bin/install -c -m 644 MPI_Grequest_start.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Grequest_start.3 /usr/bin/install -c -m 644 MPI_Group_compare.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Group_compare.3 /usr/bin/install -c -m 644 MPI_Group_difference.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Group_difference.3 /usr/bin/install -c -m 644 MPI_Group_excl.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Group_excl.3 /usr/bin/install -c -m 644 MPI_Group_free.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Group_free.3 /usr/bin/install -c -m 644 MPI_Group_incl.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Group_incl.3 /usr/bin/install -c -m 644 MPI_Group_intersection.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Group_intersection.3 /usr/bin/install -c -m 644 MPI_Group_range_excl.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Group_range_excl.3 /usr/bin/install -c -m 644 MPI_Group_range_incl.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Group_range_incl.3 /usr/bin/install -c -m 644 MPI_Group_rank.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Group_rank.3 /usr/bin/install -c -m 644 MPI_Group_size.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Group_size.3 /usr/bin/install -c -m 644 MPI_Group_translate_ranks.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Group_translate_ranks.3 /usr/bin/install -c -m 644 MPI_Group_union.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Group_union.3 /usr/bin/install -c -m 644 MPI_Iallgather.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Iallgather.3 /usr/bin/install -c -m 644 MPI_Iallgatherv.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Iallgatherv.3 /usr/bin/install -c -m 644 MPI_Iallreduce.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Iallreduce.3 /usr/bin/install -c -m 644 MPI_Ialltoall.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Ialltoall.3 /usr/bin/install -c -m 644 MPI_Ialltoallv.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Ialltoallv.3 /usr/bin/install -c -m 644 MPI_Ialltoallw.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Ialltoallw.3 /usr/bin/install -c -m 644 MPI_Ibarrier.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Ibarrier.3 /usr/bin/install -c -m 644 MPI_Ibcast.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Ibcast.3 /usr/bin/install -c -m 644 MPI_Ibsend.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Ibsend.3 /usr/bin/install -c -m 644 MPI_Iexscan.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Iexscan.3 /usr/bin/install -c -m 644 MPI_Igather.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Igather.3 /usr/bin/install -c -m 644 MPI_Igatherv.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Igatherv.3 /usr/bin/install -c -m 644 MPI_Improbe.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Improbe.3 /usr/bin/install -c -m 644 MPI_Imrecv.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Imrecv.3 /usr/bin/install -c -m 644 MPI_Ineighbor_allgather.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Ineighbor_allgather.3 /usr/bin/install -c -m 644 MPI_Ineighbor_allgatherv.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Ineighbor_allgatherv.3 /usr/bin/install -c -m 644 MPI_Ineighbor_alltoall.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Ineighbor_alltoall.3 /usr/bin/install -c -m 644 MPI_Ineighbor_alltoallv.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Ineighbor_alltoallv.3 /usr/bin/install -c -m 644 MPI_Ineighbor_alltoallw.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Ineighbor_alltoallw.3 /usr/bin/install -c -m 644 MPI_Info_create.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Info_create.3 /usr/bin/install -c -m 644 MPI_Info_delete.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Info_delete.3 /usr/bin/install -c -m 644 MPI_Info_dup.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Info_dup.3 /usr/bin/install -c -m 644 MPI_Info_free.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Info_free.3 /usr/bin/install -c -m 644 MPI_Info_get.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Info_get.3 /usr/bin/install -c -m 644 MPI_Info_get_nkeys.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Info_get_nkeys.3 /usr/bin/install -c -m 644 MPI_Info_get_nthkey.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Info_get_nthkey.3 /usr/bin/install -c -m 644 MPI_Info_get_valuelen.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Info_get_valuelen.3 /usr/bin/install -c -m 644 MPI_Info_set.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Info_set.3 /usr/bin/install -c -m 644 MPI_Init.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Init.3 /usr/bin/install -c -m 644 MPI_Initialized.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Initialized.3 /usr/bin/install -c -m 644 MPI_Init_thread.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Init_thread.3 /usr/bin/install -c -m 644 MPI_Intercomm_create.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Intercomm_create.3 /usr/bin/install -c -m 644 MPI_Intercomm_merge.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Intercomm_merge.3 /usr/bin/install -c -m 644 MPI_Iprobe.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Iprobe.3 /usr/bin/install -c -m 644 MPI_Irecv.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Irecv.3 /usr/bin/install -c -m 644 MPI_Ireduce.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Ireduce.3 /usr/bin/install -c -m 644 MPI_Ireduce_scatter.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Ireduce_scatter.3 /usr/bin/install -c -m 644 MPI_Ireduce_scatter_block.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Ireduce_scatter_block.3 /usr/bin/install -c -m 644 MPI_Irsend.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Irsend.3 /usr/bin/install -c -m 644 MPI_Iscan.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Iscan.3 /usr/bin/install -c -m 644 MPI_Iscatter.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Iscatter.3 /usr/bin/install -c -m 644 MPI_Iscatterv.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Iscatterv.3 /usr/bin/install -c -m 644 MPI_Isend.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Isend.3 /usr/bin/install -c -m 644 MPI_Issend.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Issend.3 /usr/bin/install -c -m 644 MPI_Is_thread_main.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Is_thread_main.3 /usr/bin/install -c -m 644 MPI_Keyval_create.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Keyval_create.3 /usr/bin/install -c -m 644 MPI_Keyval_free.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Keyval_free.3 /usr/bin/install -c -m 644 MPI_Lookup_name.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Lookup_name.3 /usr/bin/install -c -m 644 MPI_Mprobe.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Mprobe.3 /usr/bin/install -c -m 644 MPI_Mrecv.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Mrecv.3 /usr/bin/install -c -m 644 MPI_Neighbor_allgather.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Neighbor_allgather.3 /usr/bin/install -c -m 644 MPI_Neighbor_allgatherv.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Neighbor_allgatherv.3 /usr/bin/install -c -m 644 MPI_Neighbor_alltoall.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Neighbor_alltoall.3 /usr/bin/install -c -m 644 MPI_Neighbor_alltoallv.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Neighbor_alltoallv.3 /usr/bin/install -c -m 644 MPI_Neighbor_alltoallw.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Neighbor_alltoallw.3 /usr/bin/install -c -m 644 MPI_Op_commute.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Op_commute.3 /usr/bin/install -c -m 644 MPI_Op_create.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Op_create.3 /usr/bin/install -c -m 644 MPI_Open_port.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Open_port.3 /usr/bin/install -c -m 644 MPI_Op_free.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Op_free.3 /usr/bin/install -c -m 644 MPI_Pack.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Pack.3 /usr/bin/install -c -m 644 MPI_Pack_external.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Pack_external.3 /usr/bin/install -c -m 644 MPI_Pack_external_size.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Pack_external_size.3 /usr/bin/install -c -m 644 MPI_Pack_size.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Pack_size.3 /usr/bin/install -c -m 644 MPI_Pcontrol.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Pcontrol.3 /usr/bin/install -c -m 644 MPI_Probe.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Probe.3 /usr/bin/install -c -m 644 MPI_Publish_name.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Publish_name.3 /usr/bin/install -c -m 644 MPI_Put.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Put.3 /usr/bin/install -c -m 644 MPI_Query_thread.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Query_thread.3 /usr/bin/install -c -m 644 MPI_Raccumulate.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Raccumulate.3 /usr/bin/install -c -m 644 MPI_Recv.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Recv.3 /usr/bin/install -c -m 644 MPI_Recv_init.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Recv_init.3 /usr/bin/install -c -m 644 MPI_Reduce.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Reduce.3 /usr/bin/install -c -m 644 MPI_Reduce_local.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Reduce_local.3 /usr/bin/install -c -m 644 MPI_Reduce_scatter.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Reduce_scatter.3 /usr/bin/install -c -m 644 MPI_Reduce_scatter_block.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Reduce_scatter_block.3 /usr/bin/install -c -m 644 MPI_Register_datarep.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Register_datarep.3 /usr/bin/install -c -m 644 MPI_Request_free.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Request_free.3 /usr/bin/install -c -m 644 MPI_Request_get_status.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Request_get_status.3 /usr/bin/install -c -m 644 MPI_Rget.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Rget.3 /usr/bin/install -c -m 644 MPI_Rget_accumulate.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Rget_accumulate.3 /usr/bin/install -c -m 644 MPI_Rput.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Rput.3 /usr/bin/install -c -m 644 MPI_Rsend.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Rsend.3 /usr/bin/install -c -m 644 MPI_Rsend_init.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Rsend_init.3 /usr/bin/install -c -m 644 MPIR_Type_commit.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPIR_Type_commit.3 /usr/bin/install -c -m 644 MPIR_Type_contiguous.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPIR_Type_contiguous.3 /usr/bin/install -c -m 644 MPIR_Type_dup.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPIR_Type_dup.3 /usr/bin/install -c -m 644 MPIR_Type_get_contents.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPIR_Type_get_contents.3 /usr/bin/install -c -m 644 MPIR_Type_indexed.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPIR_Type_indexed.3 /usr/bin/install -c -m 644 MPIR_Type_struct.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPIR_Type_struct.3 /usr/bin/install -c -m 644 MPIR_Type_vector.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPIR_Type_vector.3 /usr/bin/install -c -m 644 MPI_Scan.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Scan.3 /usr/bin/install -c -m 644 MPI_Scatter.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Scatter.3 /usr/bin/install -c -m 644 MPI_Scatterv.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Scatterv.3 /usr/bin/install -c -m 644 MPI_Send.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Send.3 /usr/bin/install -c -m 644 MPI_Send_init.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Send_init.3 /usr/bin/install -c -m 644 MPI_Sendrecv.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Sendrecv.3 /usr/bin/install -c -m 644 MPI_Sendrecv_replace.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Sendrecv_replace.3 /usr/bin/install -c -m 644 MPI_Ssend.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Ssend.3 /usr/bin/install -c -m 644 MPI_Ssend_init.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Ssend_init.3 /usr/bin/install -c -m 644 MPI_Start.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Start.3 /usr/bin/install -c -m 644 MPI_Startall.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Startall.3 /usr/bin/install -c -m 644 MPI_Status_set_cancelled.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Status_set_cancelled.3 /usr/bin/install -c -m 644 MPI_Status_set_elements.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Status_set_elements.3 /usr/bin/install -c -m 644 MPI_Status_set_elements_x.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_Status_set_elements_x.3 /usr/bin/install -c -m 644 MPI_T_category_changed.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_T_category_changed.3 /usr/bin/install -c -m 644 MPI_T_category_get_categories.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_T_category_get_categories.3 /usr/bin/install -c -m 644 MPI_T_category_get_cvars.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_T_category_get_cvars.3 /usr/bin/install -c -m 644 MPI_T_category_get_index.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_T_category_get_index.3 /usr/bin/install -c -m 644 MPI_T_category_get_info.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_T_category_get_info.3 /usr/bin/install -c -m 644 MPI_T_category_get_num.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/MPI_T_category_get_num.3 /usr/bin/install -c -m 644 MPI_T_category_get_pvars.3 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/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPI_Wtick.html /usr/bin/install -c -m 644 MPI_Wtime.html /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPI_Wtime.html /usr/bin/install -c -m 644 MPI_WTIME_IS_GLOBAL.htm /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPI_WTIME_IS_GLOBAL.htm /usr/bin/install -c -m 644 MPIX_Comm_agree.html /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPIX_Comm_agree.html /usr/bin/install -c -m 644 MPIX_Comm_failure_ack.html /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPIX_Comm_failure_ack.html /usr/bin/install -c -m 644 MPIX_Comm_failure_get_acked.html /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPIX_Comm_failure_get_acked.html /usr/bin/install -c -m 644 MPIX_Comm_revoke.html /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPIX_Comm_revoke.html /usr/bin/install -c -m 644 MPIX_Comm_shrink.html /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/www3/MPIX_Comm_shrink.html if [ ! -e /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich ] ; then mkdir -p /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich ; fi if [ -s ./doc/userguide/user.pdf ] ; then /usr/bin/install -c -m 644 ./doc/userguide/user.pdf /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/user.pdf ; fi if [ -s ./doc/installguide/install.pdf ] ; then /usr/bin/install -c -m 644 ./doc/installguide/install.pdf /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/install.pdf ; fi if [ -s ./doc/logging/logging.pdf ] ; then /usr/bin/install -c -m 644 ./doc/logging/logging.pdf /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/doc/mpich/logging.pdf ; fi mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include' /usr/bin/install -c -m 644 src/binding/fortran/use_mpi/mpi.mod src/binding/fortran/use_mpi/mpi_sizeofs.mod src/binding/fortran/use_mpi/mpi_constants.mod src/binding/fortran/use_mpi/mpi_base.mod '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include' mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include' /usr/bin/install -c -m 644 src/binding/cxx/mpicxx.h src/binding/fortran/mpif_h/mpif.h src/include/mpi.h '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include' mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/pkgconfig' /usr/bin/install -c -m 644 src/packaging/pkgconfig/mpich.pc '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/pkgconfig' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2' Making install in examples make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/examples' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/examples' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/examples' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2/examples' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/mpich-3.3.2'libtool: warning: relinking 'lib/libmpifort.la' libtool: warning: relinking 'lib/libmpicxx.la' ********End of Output of running make on MPICH ******* Deleting "CC" Deleting "CXX" Deleting "FC" ================================================================================ TEST printEnvVariables from config.setCompilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/setCompilers.py:1725) TESTING: printEnvVariables from config.setCompilers(config/BuildSystem/config/setCompilers.py:1725) **** printenv **** DBUS_SESSION_BUS_ADDRESS=unix:abstract=/tmp/dbus-20rbE1TPsi,guid=98f816bfd25e41050e2226e85ed67fef SHELL=/bin/bash XDG_RUNTIME_DIR=/run/user/1001 SESSION_MANAGER=local/andromeda:@/tmp/.ICE-unix/60355,unix/andromeda:/tmp/.ICE-unix/60355 LESSOPEN=| /usr/bin/lesspipe %s LANGUAGE=en_CA:en USER=dsu SSH_CONNECTION=216.232.220.213 50127 137.82.22.143 22 QT_GRAPHICSSYSTEM=native STARTUP=/usr/bin/im-launch /usr/bin/env LD_LIBRARY_PATH= mate-session GTK_MODULES=gail:atk-bridge:gail:atk-bridge COLORTERM=mate-terminal MATE_DESKTOP_SESSION_ID=this-is-deprecated TERM=xterm GTK2_MODULES=overlay-scrollbar PETSC_DIR=/home/dsu/Soft/PETSc/petsc-3.13.2 XSESSION_EXEC=mate-session SHLVL=4 _=./configure XDG_DATA_DIRS=/usr/local/share:/usr/share:/var/lib/snapd/desktop:/var/lib/snapd/desktop LESSCLOSE=/usr/bin/lesspipe %s %s PWD=/home/dsu/Soft/PETSc/petsc-3.13.2 PATH=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin:/home/dsu/Soft/PETSc/petsc-3.10.5/linux-gnu-opt/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/home/dsu/Soft/Paraview/ParaView-5.5.0/bin:/home/dsu/Soft/VisIt/visit2_13_0.linux-x86_64/bin:/home/dsu/Soft/Intel/parallel_studio_2019/bin:/home/dsu/Soft/Paraview/ParaView-5.5.0/bin:/home/dsu/Soft/VisIt/visit2_13_0.linux-x86_64/bin:/home/dsu/Soft/Intel/parallel_studio_2019/bin HOME=/home/dsu WINDOWID=37767173 LIS_DIR=/home/dsu/Soft/lis/lis-2.0.11 LIS_ARCH=lis-openmp LS_COLORS=rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=00:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=00;36:*.au=00;36:*.flac=00;36:*.m4a=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.oga=00;36:*.opus=00;36:*.spx=00;36:*.xspf=00;36: QT_LINUX_ACCESSIBILITY_ALWAYS_ON=1 XDG_CURRENT_DESKTOP=MATE X2GO_SESSION=dsu-50-1591115755_stDMATE_dp32 XAUTHORITY=/home/dsu/.Xauthority MAIL=/var/mail/dsu QT_ACCESSIBILITY=1 SSH_CLIENT=216.232.220.213 50127 22 SSH_AUTH_SOCK=/run/user/1001/keyring/ssh LANG=en_US.UTF-8 DISPLAY=:50 LD_LIBRARY_PATH=:/home/dsu/Soft/Intel/parallel_studio_2019/lib/intel64:/home/dsu/Soft/Intel/parallel_studio_2019/lib/intel64:/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib PETSC_ARCH=linux-gnu-opt PULSE_CLIENTCONFIG=/home/dsu/.x2go/C-dsu-50-1591115755_stDMATE_dp32/.pulse-client.conf GTK_OVERLAY_SCROLLING=0 LOGNAME=dsu X2GO_AGENT_PID=60144 VTE_VERSION=4205 XDG_SESSION_ID=11979 QT_QPA_PLATFORMTHEME=appmenu-qt5 OLDPWD=/home/dsu/Soft/PETSc ================================================================================ TEST resetEnvCompilers from config.setCompilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/setCompilers.py:1732) TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1732) ================================================================================ TEST checkEnvCompilers from config.setCompilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/setCompilers.py:1762) TESTING: checkEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1762) ================================================================================ TEST checkMPICompilerOverride from config.setCompilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/setCompilers.py:1695) TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:1695) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ================================================================================ TEST requireMpiLdPath from config.setCompilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/setCompilers.py:1716) TESTING: requireMpiLdPath from config.setCompilers(config/BuildSystem/config/setCompilers.py:1716) OpenMPI wrappers require LD_LIBRARY_PATH set ================================================================================ TEST checkInitialFlags from config.setCompilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/setCompilers.py:460) TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:460) Initialize the compiler and linker flags Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Initialized CPPFLAGS to Initialized FPPFLAGS to Initialized CUDAPPFLAGS to -Wno-deprecated-gpu-targets Initialized CXXPPFLAGS to Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ================================================================================ TEST checkCCompiler from config.setCompilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/setCompilers.py:635) TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:635) Locate a functional C compiler Checking for program /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc...found Defined make macro "CC" to "/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc" Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -o /tmp/petsc-oluu3nld/config.setCompilers/conftest /tmp/petsc-oluu3nld/config.setCompilers/conftest.o Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -o /tmp/petsc-oluu3nld/config.setCompilers/conftest /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -o /tmp/petsc-oluu3nld/config.setCompilers/conftest /tmp/petsc-oluu3nld/config.setCompilers/conftest.o Testing executable /tmp/petsc-oluu3nld/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-oluu3nld/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-oluu3nld/config.setCompilers/conftest Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc --version stdout: gcc (Ubuntu 5.4.0-6ubuntu1~16.04.12) 5.4.0 20160609 Copyright (C) 2015 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Since MPI c compiler starts with mpi, force searches for other compilers to only look for MPI compilers ================================================================================ TEST checkCPreprocessor from config.setCompilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/setCompilers.py:674) TESTING: checkCPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:674) Locate a functional C preprocessor Checking for program /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc...found Defined make macro "CPP" to "/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -E -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: ================================================================================ TEST checkCUDACompiler from config.setCompilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/setCompilers.py:710) TESTING: checkCUDACompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:710) Locate a functional CUDA compiler Checking for program /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/nvcc...not found Checking for program /home/dsu/Soft/PETSc/petsc-3.10.5/linux-gnu-opt/bin/nvcc...not found Checking for program /usr/local/sbin/nvcc...not found Checking for program /usr/local/bin/nvcc...not found Checking for program /usr/sbin/nvcc...not found Checking for program /usr/bin/nvcc...not found Checking for program /sbin/nvcc...not found Checking for program /bin/nvcc...not found Checking for program /usr/games/nvcc...not found Checking for program /usr/local/games/nvcc...not found Checking for program /snap/bin/nvcc...not found Checking for program /home/dsu/Soft/Paraview/ParaView-5.5.0/bin/nvcc...not found Checking for program /home/dsu/Soft/VisIt/visit2_13_0.linux-x86_64/bin/nvcc...not found Checking for program /home/dsu/Soft/Intel/parallel_studio_2019/bin/nvcc...not found Checking for program /home/dsu/Soft/Paraview/ParaView-5.5.0/bin/nvcc...not found Checking for program /home/dsu/Soft/VisIt/visit2_13_0.linux-x86_64/bin/nvcc...not found Checking for program /home/dsu/Soft/Intel/parallel_studio_2019/bin/nvcc...not found Checking for program /home/dsu/Soft/PETSc/petsc-3.13.2/lib/petsc/bin/win32fe/nvcc...not found Unable to find programs ['nvcc'] providing listing of each search directory to help debug Path provided in Python program Path provided by default path ['mpichversion', 'mpic++', 'mpiexec', 'mpirun', 'hydra_nameserver', 'mpicxx', 'mpif90', 'mpivars', 'mpifort', 'mpif77', 'parkill', 'mpiexec.hydra', 'hydra_persist', 'hydra_pmi_proxy', 'mpicc'] ['mpichversion', 'h5unjam', 'h5perf', 'h5dump', 'mpic++', 'h5copy', 'mpiexec', 'h5import', 'mpirun', 'h5debug', 'gif2h5', 'h5repart', 'h5ls', 'hydra_nameserver', 'mpicxx', 'h5jam', 'ph5diff', 'h5redeploy', 'mpif90', 'h5mkgrp', 'h5pcc', 'h5perf_serial', 'h52gif', 'h5repack', 'mpivars', 'mpifort', 'mpif77', 'parkill', 'h5diff', 'mpiexec.hydra', 'hydra_persist', 'h5pfc', 'h5stat', 'hydra_pmi_proxy', 'mpicc'] [] ['mcc', 'cmpfillin', 'cgal_make_macosx_app', 'cgal_create_CMakeLists', 'ndmetis', 'gpmetis', 'deploytool', 'matlab', 'cgal_create_cmake_script', 'mbuild', 'm2gmetis', 'mex', 'mpmetis', 'graphchk'] ['grpconv', 'rpc.mountd', 'x2gocleansessions', 'su-to-root', 'cupsfilter', 'lpadmin', 'safe_finger', 'grpunconv', 'deluser', 'iconvconfig', 'update-passwd', 'rsyslogd', 'grub-mkconfig', 'tor-instance-create', 'dmidecode', 'dnsmasq', 'install-sgmlcatalog', 'dkms', 'NetworkManager', 'rtcwake', 'rpc.svcgssd', 'install-menu', 'update-icon-caches', 'nfsidmap', 'hddtemp', 'pppoeconf', 'nfnl_osf', 'update-alternatives', 'fdformat', 'laptop-detect', 'popcon-largest-unused', 'dpkg-preconfigure', 'logrotate', 'groupmod', 'invoke-rc.d', 'update-pciids', 'update-default-aspell', 'filefrag', 'create-cracklib-dict', 'kerneloops', 'cupsaccept', 'setvesablank', 'pwconv', 'zic', 'newusers', 'dpkg-reconfigure', 'ownership', 'pam_timestamp_check', 'dpkg-divert', 'useradd', 'popularity-contest', 'xfce4-kiosk-query', 'tcpdump', 'blkmapd', 'cupsctl', 'pppdump', 'pm-suspend-hybrid', 'sensors-detect', 'update-default-wordlist', 'nfsstat', 'saned', 'readprofile', 'cppw', 'update-java-alternatives', 'pppd', 'update-grub-gfxpayload', 'ModemManager', 'pam-auth-update', 'update-dictcommon-hunspell', 'cupsaddsmb', 'e4defrag', 'update-rc.d', 'update-info-dir', 'acpid', 'chpasswd', 'arp', 'usb_modeswitch', 'update-inetd', 'paperconfig', 'isadump', 'vigr', 'lpc', 'thermald', 'delgroup', 'vbetool', 'remove-default-ispell', 'tcpdchk', 'cpgr', 'select-default-ispell', 'rpcdebug', 'tarcat', 'getweb', 'usb_modeswitch_dispatcher', 'pwck', 'pm-hibernate', 'remove-shell', 'update-fonts-alias', 'service', 'alsa-info.sh', 'gss_clnt_send_err', 'rpc.idmapd', 'remove-default-wordlist', 'ippusbxd', 'cracklib-check', 'cracklib-format', 'tor', 'cups-genppdupdate', 'grub-probe', 'guest-account', 'irqbalance', 'avahi-daemon', 'cron', 'sshd', 'unity-greeter', 'rmt-dump', 'update-usbids', 'pwunconv', 'gss_destroy_creds', 'nrpe', 'addgnupghome', 'pm-powersave', 'apparmor_status', 'chat', 'nfsdcltrack', 'install-docs', 'update-gsfontmap', 'groupadd', 'cracklib-unpacker', 'visudo', 'update-grub2', 'exportfs', 'mklost+found', 'ip6tables-apply', 'add-shell', 'update-binfmts', 'rmt', 'locale-gen', 'select-default-wordlist', 'pptpsetup', 'update-default-ispell', 'grpck', 'rmt-tar', 'x2goshowblocks', 'nfsiostat', 'mkinitramfs', 'lpinfo', 'tcpd', 'ispell-autobuildhash', 'update-cracklib', 'gnome-menus-blacklist', 'x2golistsessions_root', 'update-ca-certificates', 'ufw', 'cupsd', 'aa-exec', 'cupsenable', 'lpmove', 'bluetoothd', 'aptd', 'aspell-autobuildhash', 'update-mime', 'start-statd', 'gconf-schemas', 'reject', 'grub-bios-setup', 'nologin', 'make-ssl-cert', 'update-grub', 'grub-macbless', 'usermod', 'ldattach', 'addgroup', 'alsactl', 'rpc.nfsd', 'pam_getenv', 'update-icon-caches.gtk2', 'uuidd', 'upgrade-from-grub-legacy', 'rtkitctl', 'mate-power-backlight-helper', 'update-dictcommon-aspell', 'vcstime', 'pppstats', 'applygnupgdefaults', 'pptp', 'update-xmlcatalog', 'aa-remove-unknown', 'grub-install', 'rpcinfo', 'vpddecode', 'validlocale', 'gparted', 'iucode_tool', 'adduser', 'tcpdmatch', 'accept', 'try-from', 'usbmuxd', 'grub-mkdevicemap', 'isaset', 'iio-sensor-proxy', 'tunelp', 'arpd', 'aa-status', 'rpc.gssd', 'mate-display-properties-install-systemwide', 'update-locale', 'and', 'dpkg-statoverride', 'cupsreject', 'tzconfig', 'gpartedbin', 'update-initramfs', 'update-mate-menu-x2go', 'grub-set-default', 'chgpasswd', 'update-fonts-dir', 'update-catalog', 'iptables-apply', 'anacron', 'toshsat1800-irdasetup', 'realm', 'update-fonts-scale', 'x2godbadmin', 'accessdb', 'vipw', 'cups-browsed', 'pppoe-discovery', 'userdel', 'e2freefrag', 'rfkill', 'grub-reboot', 'cracklib-packer', 'lightdm-session', 'pm-suspend', 'pppconfig', 'mountstats', 'genl', 'lightdm', 'chroot', 'cupsdisable', 'biosdecode', 'iucode-tool', 'avahi-autoipd', 'groupdel'] ['rcp', 'gem2.3', 'mate-session-inhibit', 'asan_symbolize-3.9', 'llvm-mc-3.8', 'foo2xqx', 'x2goruncommand', 'flipdiff', 'cinnamon-session-cinnamon2d', 'elfedit', 'c_rehash', 'monitor-sensor', 'host', 'pon', 'dbus-monitor', 'qdoc', 'hp-doctor', 'mclasserase', 'mkfontdir', 'dh_installmodules', 'x86_64-linux-gnu-ld', 'pbmtext', 'check-language-support', 'wall', 'flock', 'foo2hbpl2-wrapper', 'unzipsfx', 'qmlplugindump', 'etags', 'ld.bfd', 'sha384sum', 'rtstat', 'pilfile', 'arm2hpdl', 'llvm-dis-3.9', 'telnet.netkit', 'mpirun.openmpi', 'mlocate', 'syslinux-legacy', 'dh_suidregister', 'llvm-extract', 'llvm-nm', '7z', 'su-to-root', 'llvm-mc-3.9', 'scanimage', 'vi', 'pdfunite', 'ngettext', 'pnmpsnr', 'hp-scan', 'xfconf-query', 'updatedb.mlocate', 'pdftops', 'llvm-symbolizer-3.9', 'lowriter', 'mdeltree', 'lsb_release', 'hp-info', 'grub-mkrescue', 'busctl', 'foo2zjs-wrapper', 'nm-connection-editor', 'orte-dvm', 'setleds', 'x86_64-linux-gnu-readelf', 'last', 'pbmclean', 'gawk', 'xdg-open', 'ubuntu-support-status', 'ranlib', 'ruby', 'cpp-5', 'mdir', 'pdfimages', 'fitstopnm', 'icontopbm', 'dh_auto_test', 'po2debconf', 'intel_display_crc', 'gucharmap', 'gnome-calculator', 'activity-log-manager', 'compare', 'pnmtoxwd', 'mdel', 'min12xxw', 'system-config-printer-applet', 'routel', 'gfortran', 'cinnamon-session', 'pkcheck', 'w.procps', 'msd-locate-pointer', 'ppmflash', 'pbmtonokia', 'word-list-compress', 'qmlprofiler', 'mmd', 'brushtopbm', 'msgunfmt', 'gpg-zip', 'intel_panel_fitter', 'cinnamon-extension-tool', 'cups-calibrate', 'pcxtoppm', 'lsdiff', 'uic3', 'deja-dup', 'amuFormat.sh', 'ppmchange', 'gnome-terminal.wrapper', 'qmleasing', 'java', 'obj2yaml', 'pbmtoppa', 'tracepath6', 'dgscat-int32', 'whoopsie-preferences', 'rawtoppm', 'splitfont', 'hwloc-gather-topology', 'nmtui', 'showrgb', 'gkbd-keyboard-display', 'unexpand', 'caja-connect-server', 'emacs24-x', 'llvm-mc', 'apport-unpack', 'view', 'gsdj500', 'ompi-top', 'ppmtoyuvsplit', 'clang-apply-replacements-3.9', 'mate-volume-control-applet', 'grog', 'x86_64-linux-gnu-gcc-ar', 'rpmverify', 'pnmsmooth', 'intel_framebuffer_dump', 'ld.gold', 'mate-appearance-properties', 'llvm-c-test-3.8', 'msgfmt', 'dh_icons', 'msggrep', 'yelp', 'apt-cache', 'llvm-nm-3.9', 'ppmspread', 'llvm-readobj-3.9', 'hcitool', 'llvm-dsymutil-3.9', 'unattended-upgrades', 'dropbox', 'mate-session', 'ppmfade', 'mate-search-tool', 'whereis', 'aplay', 'llc', 'pbmto10x', 'ftp', 'pnmcat', 'pnmtotiff', 'systemd-cat', 'grub-mklayout', 'lnstat', 'pbmtoatk', 'hp-pkservice', 'cinnamon-session-cinnamon', 'pg', 'deja-dup-preferences', 'csplit', 'llvm-dwarfdump', 'users', 'llvm-bcanalyzer-3.9', 'lwp-request', 'write', 'rlogin', 'pdf2dsc', 'intel_lid', 'dbus-run-session', 'gvfs-ls', 'pwgen', 'pgmtopbm', 'udisksctl', 'msgfilter', 'env', 'pstruct', 'gslj', 'glxinfo', 'bluetooth-sendto', 'xedid', 'intel-gen4disasm', 'ppmtopcx', 'mate-about', 'renice', 'rpmspec', 'hp-clean', 'pgmnorm', 'msginit', 'unity-webapps-runner', 'fail2ban-server', 'install-menu', 'f77', 'x2gofm', 'xlsfonts', 'snapctl', 'gsnd', 'xfce4-panel', 'gettext.sh', 'pgmtoppm', 'ppmtotga', 'xedit', 'mpiexec.openmpi', 'x86_64-linux-gnu-ld.bfd', 'rpcgen', 'lzcat', 'wpa_passphrase', 'dh_installppp', 'dpkg-source', 'ppmhist', 'google-chrome', 'llvm-config-3.8', 'pacat', 'mmount', 'verify-uselistorder-3.8', 'x86_64-linux-gnu-cpp', 'gpasswd', 'gst-device-monitor-1.0', 'bmptoppm', 'dgscat', 'obj2yaml-3.9', 'updatedb', 'x86_64-linux-gnu-gcov', 'xditview', 'pbmtopi3', 'printerbanner', 'recountdiff', 'gcc', 'shuf', 'llvm-lib-3.8', 'dh_testroot', 'ppmdist', 'localectl', 'cinnamon-file-dialog', 'from', 'intel_display_poller', 'xfwm4-settings', 'lpr', 'mate-mouse-properties', 'hp-plugin-ubuntu', 'iptables-xml', 'x86_64-linux-gnu-elfedit', 'dh_builddeb', 'eqn', 'resize', 'cinnamon-looking-glass', 'pamoil', 'x86_64-linux-gnu-c++filt', 'opt-3.9', 'update-alternatives', 'gnome-screenshot', 'anytopnm', 'alsabat', 'tap2rpm', 'arecord', 'lzfgrep', 'psfstriptable', 'llvm-size', 'dbus-cleanup-sockets', 'gatttool', 'pbmpscale', 'clhsdb', 'llvm-ranlib', 'llvm-tblgen', 'test', 'svnauthz-validate', 'libwacom-list-local-devices', 'ms_print', 'orbd', 'thunar', 'llvm-cxxdump-3.9', 'pnmpad', 'gtbl', 'llvm-link-3.9', 'ibus-daemon', 'savelog', 'llvm-cov-3.9', 'dpkg-gencontrol', 'cupstestdsc', 'clear_console', 'grub-mkrelpath', 'dehtmldiff', 'mkfontscale', 'c-index-test-3.9', 'nemo-connect-server', 'llc-3.8', 'mate-wm', 'engrampa', 'mate-system-monitor', 'infotocap', 'pbmtog3', 'pamon', 'pnmtojpeg', 'speech-dispatcher', 'lpoptions', 'thunar-volman', 'dgmap', 'xfontsel', 'xconsole', 'yes', 'x2gocmdexitmessage', 'atril-previewer', 'lessfile', 'x2goversion', 'conjure-im6', 'apt-key', 'gnome-system-log-pkexec', 'mate-keyboard-properties', 'nvidia-cuda-mps-server', 'grub-mount', 'bdftruncate', 'intel_gpu_top', 'aplaymidi', 'mtype', 'ssh-import-id-gh', 'x2goumount-session', 'opt-3.8', 'jedit', 'intel_stepping', 'lzgrep', 'addpart', 'flex', 'gs', 'xscreensaver-getimage-video', 'grepdiff', 'xwud', 'xdg-screensaver', 'lupdate', 'mate-font-viewer', 'thunar-volman-settings', 'xdg-desktop-icon', 'gapplication', 'dgscat-int64', 'getent', 'apt-ftparchive', 'xzdiff', 'sane-find-scanner', 'cinnamon-slideshow', 'gcalccmd', 'update-desktop-database', 'apport-bug', 'foo2zjs', 'svn', 'ompi-ps', 'ppmtoilbm', 'ppmquant', 'piconv', 'unshare', 'kerneloops-submit', 'vstp', 'browse', 'rpmkeys', 'foo2hp', 'ubuntu-webapps-update-index', 'mpiexec', 'gvfs-move', 'gist-paste', 'pygettext2.7', 'esc-m', 'whois', 'fakeroot', 'clang-3.9', 'ompi-server', 'setterm', 'linux-version', 'bootctl', 'fc-validate', 'pnmtosgi', 'msgcmp', 'clang-query-3.9', 'x2golistdesktops', 'pasuspender', 'ico', 'nvidia-xconfig', 'resizecons', 'foo2hbpl2', 'debconf-apt-progress', 'pilconvert', 'pnmtotiffcmyk', 'mbadblocks', 'xfsinfo', 'systemd-analyze', 'aspell', 'gnome-keyring', 'sotruss', 'dh_makeshlibs', 'pinentry-x11', 'convert', 'intel_backlight', 'llvm-ar-3.9', 'transset', 'intel_watermark', 'cg_annotate', 'apport-collect', 'wish', 'pluma', 'xflock4', 'gnome-software', 'uuidgen', 'mate-session-properties', 'unity-settings-daemon', 'git-upload-archive', 'xscreensaver-getimage-file', 'g++-5', 't1disasm', 'groups', 'gprof', 'ppmtompeg', 'xfce4-appfinder', 'pic', 'tail', 'pycompile', 'vino-preferences', 'apropos', 'dh_installchangelogs', 'conch', 'ssh-agent', 'lastlog', 'pnmdepth', 'eject', 'libnetcfg', 'lscpu', 'cmpfillin', 'qmlmin', 'sensible-editor', 'hp-align', 'mate-window-properties', 'systemd-stdio-bridge', 'display-im6', 'startxfce4', 'lwp-download', 'irb', 'qmltestrunner', 'qhelpconverter', 'ppmdither', 'scp', 'llvm-extract-3.9', 'llvm-nm-3.8', 'gst-install', 'mkmanifest', 'pilfile.py', 'orca-dm-wrapper', 'pydoc2.7', 'md5sum.textutils', 'hostnamectl', 'prezip', 'rdoc2.3', 'marco-window-demo', 'pnmsplit', 'pdb3.5', 'fonttosfnt', 'smproxy', 'x86_64-linux-gnu-addr2line', 'mpirun', 'atobm', 'ispell-wrapper', 'foo2hiperc', 'git', 'vino-passwd', 'zeitgeist-datahub', 'bioradtopgm', 'dpkg-buildpackage', 'cpan5.22-x86_64-linux-gnu', 'mpartition', 'pvrenderserver', 'prove', 'ppmlabel', 'fix-qdf', 'setfacl', 'initctl2dot', 'erb2.3', 'gpgsplit', 'cs2cs', 'metacity-window-demo', 'nemo-desktop', 'nautilus-autorun-software', 'dgmap-long', 'mate-terminal.wrapper', 'xfce4-mime-settings', 'avahi-publish-service', 'combinediff', 'cinnamon-control-center', 'ppmtomitsu', 'usbhid-dump', 'dpkg-divert', 'ps2pdfwr', 'mkpasswd', 'aconnect', 'nawk', 'debconf-set-selections', 'vtk6python', 'dh_link', 'mmove', 'cinnamon-session-quit', 'foo2xqx-wrapper', 'ppmnorm', 'hp-query', 'kbdinfo', 'clang-include-fixer-3.9', 'top', 'x2gogetapps', 'awk', 'pildriver', 'msd-datetime-mechanism', 'which', 'rfcomm', 'desktop-file-edit', 'dgmap-int64', 'openssl', 'hwloc-ps', 'llvm-ranlib-3.9', 'convert-im6', 'infobrowser', 'Thunar', 'lprm', 'llvm-as-3.9', 'dpkg-checkbuilddeps', 'bccmd', 'grub-kbdcomp', 'mcd', 'dh_installcatalogs', 'orte-clean', 'gtk-launch', 'xkbvleds', 'paste', 'display', 'cg_merge', 'pnmtopalm', 'dgpart', 'man', 'x86_64-pc-linux-gnu-pkg-config', 'djpeg', 'lp', 'bugpoint-3.8', 'xscreensaver-text', 'find-all-symbols-3.9', 'volname', 'leaftoppm', 'gnome-session-quit', 'ctest', 'gpg-connect-agent', 'nemo-autorun-software', 'orage', 'gemtopnm', 'ar', 'grub-glue-efi', 'gtk-builder-tool', 'llvm-ranlib-3.8', 'llvm-dwarfdump-3.9', 'appres', 'rename.ul', 'mkfifo', 'pi1toppm', 'mesg', 'printenv', 'rstart', 'chcon', 'fc-cache', 'c99', 'xfrun4', 'pbmtobbnbg', 'xzmore', 'nslookup', 'x2gosetkeyboard', 'od', 'x86_64', 'splain', 'mate-dictionary', 'xkbcomp', 'trust', 'dh_autotools-dev_updateconfig', 'chardet', 'cheese', 'ppmtoleaf', 'xlsclients', 'pbmupc', 'xzcmp', 'mmcli', 'tr', 'synclient', 'thunar-settings', 'edit', 'a11y-profile-manager-indicator', 'lldb-server-3.9.1-3.9', 'make', 'system-config-printer', 'x2goagent', 'pilprint.py', 'gconf-merge-tree', 'ocat', 'dh_installcron', 'tificc', 'gsbj', 'composite-im6', 'pbmtopgm', 'caja-autorun-software', 'pbmmask', 'ghostscript', 'uz', 'gnome-session-inhibit', 'pnmtosir', 'cpan', 'yuvsplittoppm', 'qtchooser', 'dh_desktop', 'systemd-delta', 'ciptool', 'on_ac_power', 'passwd', 'qmlbundle', 'nroff', 'mshortname', 'fstopgm', 'git-shell', 'gvfs-monitor-file', 'ptar', 'alsamixer', 'install-info', 'svnsync', 'gcc-ar-5', 'glxheads', 'x86_64-linux-gnu-g++', 'cupstestppd', 'xfdesktop', 'acpi_listen', 'ps2ps2', 'psidtopgm', 'msgcat', 'xwdtopnm', 'colrm', 'llvm-tblgen-3.8', 'tput', 'dc', 'xdg-user-dir', 'foo2hiperc-wrapper', 'ppmtoyuv', 'winicontoppm', 'pbmreduce', 'nvidia-smi', 'nsenter', 'sensors', 'namei', 'nmtui-connect', 'slxdecode', 'sum', 'geod', 'x86_64-linux-gnu-gfortran', 'clang++-3.9', 'ipcs', 'x86_64-linux-gnu-gcov-tool', 'pnmtoplainpnm', 'rpmdb', 'gcov', 'svnserve', 'json_pp', 'llvm-lto-3.9', 'opldecode', 'qml', 'pgmedge', 'sbigtopgm', 'skill', 'desktop-file-install', 'pnmtoddif', 'foo2lava', 'pnmcrop', 'poff', 'pdb', 'slogin', 'ubuntu-software', 'ppmdim', 'ibus-setup', 'gst-discoverer-1.0', 'xfce4-notifyd-config', 'apt-get', 'bluetoothctl', 'zip', 'ctags.emacs24', 'gst-launch-1.0', 'chardet3', 'baobab', 'avahi-publish', 'npm', 'fallocate', 'pnmhisteq', 'eyuvtoppm', 'pgmbentley', 'atril-thumbnailer', 'tclsh', 'llvm-pdbdump-3.9', 'base32', 'mate-panel-screenshot', 'viewres', 'fc-match', 'xfwm4', 'ucf', 'stat', 'nvidia-debugdump', 'seq', 'parec', 'lodraw', 'sbkeysync', 'koi8rxterm', 'gvfs-monitor-dir', 'xfd', 'llvm-dwarfdump-3.8', 'remmina', 'ppmforge', 'gsettings-data-convert', 'gst-play-1.0', 'xdg-mime', 'ppmqvga', 'speaker-test', 'add-apt-repository', 'x2goterminate-session', 'sha256sum', 'dh_gencontrol', 'htop', 'x86_64-linux-gnu-gcc-ar-5', 'unity-webapps-qml-launcher', 'gpgv', 'dh_installxmlcatalogs', 'pgmkernel', 'xvminitoppm', 'pdfseparate', 'h2ph', 'dpkg-scansources', 'hp-colorcal', 'orte-server', 'p11-kit', 'xzegrep', 'llvm-dwp-3.8', 'pybuild', 'mate-settings-daemon', 'amidi', 'uxterm', 'cinnamon-screensaver-command', 'llvm-dwp-3.9', 'psicc', 'dpkg-query', 'dgtst-int32', 'xbiff', 'xrotate', 'ps2pdf14', 'llvm-objdump-3.8', 'eom', 'fail2ban-testcases', 'loadkeys', 'dgord-long', 'xdg-email', 'dh_shlibdeps', 'pbmtogo', 'gold', 'tic', 'ppmtoxpm', 'avahi-browse', 'xmlpatterns', 'svnrdump', 'orte-top', 'cpufreq-info', 'gendiff', 'dh_installemacsen', 'comm', 'mdu', 'bison', 'gnome-thumbnail-font', 'systemd-resolve', 'node', 'gpg', 'xsetpointer', 'nxagent', 'notify-send', 'bsd-from', 'hydra_nameserver', 'cd-fix-profile', 'xinit', 'rpm', 'xfce4-session', 'clang-rename-3.9', '2to3-3.5', 'ckeygen', 'gnome-settings-daemon', 'qpdf', 'cjpeg', 'grub-mkpasswd-pbkdf2', 'orte-ps', 'xfce4-popup-directorymenu', 'valgrind-di-server', 'orterun', 'inxi', 'xload', 'session-migration', 'hp-timedate', 'readelf', 'ppmquantall', 'qml1plugindump', 'python', 'gdbtui', 'whatis', 'lpq', 'lsusb', 'podebconf-display-po', 'xrdb', 'tzselect', 'pnminterp-gen', 'x86_64-linux-gnu-gcc-nm-5', 'gpgparsemail', 'l2ping', 'lldb-mi-3.9', 'st4topgm', 'composite', 'apport-cli', 'nodejs', 'qrttoppm', 'opt', 'xfsettingsd', 'compiz', 'linkicc', 'debugedit', 'llvm-size-3.8', 'mattrib', 'animate-im6', 'mpirun.mpich', 'factor', 'llvm-extract-3.8', 'gpg2', 'ppmtoacad', 'assistant', 'pbmtozinc', 'alien', 'routef', 'aseqdump', 'rpm2archive', 'thinkjettopbm', 'rsync', 'debconf-gettextize', 'cpufreq-set', 'pilfont.py', 'pldd', 'file-roller', 'cancel', 'svnauthz', 'xgamma', 'dircolors', 'ipcmk', 'cg_diff', 'servertool', 'rev', 'lsof', 'glxgears', 'grub-mkimage', 'xfce4-volumed', 'gcore', 'py3versions', 'xlsatoms', 'debconf-show', 'grub-render-label', 'llvm-bcanalyzer', 'x2gomountdirs', 'yaml2obj-3.9', 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'llvm-mcmarkup-3.8', 'gst-inspect-1.0', 'x86_64-linux-gnu-ranlib', 'peekfd', 'dpkg-vendor', 'tz_convert', 'Xorg', 'gtk-update-icon-cache-3.0', 'gnome-www-browser', 'pdftocairo', 'msgexec', 'pnmnlfilt', 'rawtopgm', 'nm', 'pnmmontage', 'seahorse', 'update-manager', 'dh_lintian', 'llvm-diff-3.9', 'pkill', 'llvm-split-3.9', 'llvm-size-3.9', 'sudo', 'troff', 'python3m', 'pstopnm', 'pngtopnm', 'x86_64-linux-gnu-gprof', 'pgmenhance', 'erb', 'gvfs-rename', 'gnome-control-center', 'vtkWrapPython-6.2', 'column', 'mate-about-me', 'X', 'hwloc-info', 'id', 'mate-system-log', 'dh_installudev', 'printer-profile', 'x2gofeature', 'mk_modmap', 'startx', 'lldb-server-3.9', 'file2brl', 'strip', 'dh_autotools-dev_restoreconfig', 'lastb', 'gvfs-cat', 'pinentry', 'gksu', 'ppmtopuzz', 'pnmconvol', 'ssh-import-id-lp', 'pilprint', 'pnmtofiasco', 'dpkg-statoverride', 'llvm-cov-3.8', 'pbmmake', 'software-properties-gtk', 'intel-gpu-overlay', 'compiz-decorator', 'enchant-lsmod', 'i686-linux-gnu-pkg-config', 'syndaemon', 'dh_prep', 'psfxtable', 'libreoffice', 'flex++', 'apt', 'caja-file-management-properties', 'intel-gen4asm', 'emacs24', 'py3clean', 'btattach', 'systemd-cgls', 'signond', 'prlimit', 'setarch', 'lorder', 'gvfs-less', 'lldb-3.9.1-3.9', 'sg', 'cautious-launcher', 'policytool', 'prime-supported', 'qpdldecode', 'pygettext3.5', 'onboard-settings', 'pamfile', 'setsid', 'crc32', 'x86_64-linux-gnu-gcc-ranlib', 'whoami', 'mawk', 'llvm-profdata-3.9', 'ompi_info', 'im-launch', 'ubuntu-drivers', 'gparted-pkexec', 'install', 'unattended-upgrade', 'dgmap-int32', 'dpkg-buildflags', 'dh_movefiles', 'pnminterp', 'google-chrome-stable', 'print', 'pl2pm', 'xscreensaver-demo', 'llvm-as-3.8', 'hipstopgm', 'svnfsfs', 'pbmtoybm', 'encguess', 'svnmucc', 'x2gocaja', 'getfacl', 'llvm-lib-3.9', 'mzip', 'ppmtogif', 'upload-system-info', 'mscompress', 'qmlimportscanner', 'intel_l3_parity', 'shred', 'lintian', 'ompi-clean', 'lp_solve', 'update-notifier', 'dh_clean', 'dh_auto_configure', 'mate-thumbnail-font', 'dh_strip_nondeterminism', 'time', 'vglgenkey', 'firefox', 'grub-menulst2cfg', 'identify', 'snap', 'pnmremap', 'gcat', 'mimeopen', 'metacity-message', 'dh_installmime', 'ppmtopgm', 'c89-gcc', 'gvfs-mkdir', 'isovfy', 'xauth', 'lsinitramfs', 'preunzip', 'pamdice', 'webapp-container', 'yaml2obj', 'zeisstopnm', 'invgeod', 'mate-invest-chart', 'msgcomm', 'asciitopgm', 'xfce4-about', 'ipod-read-sysinfo-extended', 'pygettext', 'dgtst-int64', 'pico', 'systemd-cgtop', 'avahi-browse-domains', 'mcat', 'graphchk', 'zenity', 'hd', 'eps2eps', 'pvserver', 'pgmoil', 'pcimodules', 'xlet-settings', 'nmtui-edit', 'sensible-pager', 'pnmtofits', 'pdftotext', 'marco', 'parkill', 'pphs', 'nmtui-hostname', 'less', 'animate', 'tkconch', 'ptargrep', 'dgord-int64', 'faked-tcp', 'intel_aubdump', 'lli-child-target-3.9', 'zipnote', 'createfontdatachunk', 'run-mailcap', 'enchant', 'xterm', 'nm-online', 'partx', 'nmcli', 'setmetamode', 'systemd-run', 'pod2usage', 'rgrep', 'tabs', 'xkbwatch', 'gvfs-open', 'stdbuf', 'paraview', 'dpkg-name', 'caja', 'x86_64-linux-gnu-gcc-nm', 'session-installer', 'foo2slx-wrapper', 'alsaloop', 'nvidia-persistenced', 'ischroot', 'xprop', 'sessreg', 'realpath', 'xfdesktop-settings', 'f2py', 'symcryptrun', 'pdfinfo', 'setlogcons', 'transmission-gtk', 'bmptopnm', 'sudoedit', 'torify', 'pbmtoxbm', 'mpiexec.hydra', 'fail2ban-client', 'reset', 'mate-control-center', 'sudoreplay', 'desktop-file-validate', 'xpci', 'file-rename', 'hp-config_usb_printer', 'nsupdate', 'pbmtoplot', 'x11perfcomp', 'fc-cat', 'rendercheck', 'xkbbell', 'gnome-file-share-properties', 'dh_installinfo', 'xfce4-popup-windowmenu', 'gnome-system-monitor', 'mtools', 'cmp', 'qlalr', 'ntfsdecrypt', 'foo2oak', 'ppmtv', 'ppmcie', 'dh_installmenu', 'lofromtemplate', 'codepage', 'tifftopnm', 'lconvert', 'lspgpot', 'hsdb', 'intel_opregion_decode', 'llvm-rtdyld', 'ssh-add', 'x86_64-linux-gnu-gcc-5', 'mate-keybinding-properties', 'rediff', 'hydra_persist', 'ibus', 't1asm', 'hwloc-annotate', 'ppmtolj', 'pamdeinterlace', 'intel_gpu_time', 'xfhelp4', 'etags.emacs24', 'ps2ascii', 'ncal', 'mate-default-applications-properties', 'deallocvt', 'twistd', 'rmiregistry', 'igawk', 'dh_gconf', 'tee', 'intel_forcewaked', 'hwloc-distrib', 'gsettings-schema-convert', 'bashbug', 'mcomp', 'linguist', 'tracepath', 'oclock', 'dh_installman', 'glib-compile-resources', 'padsp', 'deb-systemd-invoke', 'pi3topbm', 'gdbserver', 'dh_python3', 'sancov-3.9', 'pnmpaste', 'taskset', 'imgtoppm', 'igt_stats', '411toppm', 'bsd-write', 'scp-dbus-service', 'mpaste', 'x-terminal-emulator', 'gpgconf', 'intel-virtual-output', 'rmid', 'evince-thumbnailer', 'llvm-as', 'lz', 'wc', 'ppmcolormask', 'ssh-argv0', 'split', 'dotlockfile', 'install-printerdriver', 'mate-network-properties', 'fixcvsdiff', 'xscreensaver-command', 'globaltime', 'watchgnupg', 'col', 'i386', 'catman', 'shasum', 'dh_installexamples', 'eog', 'sha512sum', 'pnmnoraw', 'dh_perl', 'dh_installxfonts', 'dh_installmanpages', 'xrefresh', 'pyclean', 'debconf-copydb', 'fc-list', 'loffice', 'dh_installifupdown', 'atktopbm', 'cinnamon-desktop-editor', 'chardetect3', 'gnome-language-selector', 'dpkg-gensymbols', 'sgitopnm', 'gcc-ar', 'script', 'xmlpatternsvalidator', 'verify-uselistorder-3.9', 'bluemoon', 'btmgmt', 'lli', 'hwloc-distances', 'update-mime-database.real', 'llvm-dis-3.8', 'free', '2to3', 'wish8.6', 'dconf', 'xzfgrep', 'qdoc3', 'POST', 'pathchk', 'vim.tiny', 'x2gostartagent', 'proj', 'x86_64-linux-gnu-g++-5', 'x86_64-linux-gnu-nm', 'netkit-ftp', 'qmake', 'gnome-open', 'dh_strip', 'c89', 'pinky', 'dbiproxy', 'xrandr-tool', 'pf2afm', 'x2goresume-session', 'pgmslice', 'sputoppm', 'sbverify', 'mate-power-manager', 'pdftohtml', 'rpmquery', 'deb-systemd-helper', 'rhythmbox-client', 'apt-add-repository', 'pamstack', 'nvidia-cuda-mps-control', 'intel_dump_decode', 'python2', 'lli-3.8', 'pnmtorast', 'gdbus', 'ps2txt', 'enhancer', 'ppmshadow', 'qcollectiongenerator', 'strings', 'neqn', 'pkexec', 'cut', 'pnmgamma', 'dh_dkms', 'gtf', 'bitmap', 'hydra_pmi_proxy', 'chage', 'viewer.py', 'ppdpo', 'pydoc3.5', 'locate', 'chrt', 'gcov-tool', 'x2goumount_session', 'spellintian', 'newgrp', 'gnome-power-statistics', 'pstree.x11', 'invproj', 'foo2lava-wrapper', 'sdptool', 'getkeycodes', 'HEAD', 'bugpoint', 'grub-syslinux2cfg', 'atril', 'python3.5m', 'pamstretch', 'gconftool-2', 'ttfread', 'py3compile', 'pastebin', 'xgc', 'zipgrep', 'lispmtopgm', 'rgb3toppm', 'intel_reg_checker', 'ppmtopict', 'gpu-manager', 'lrelease', 'pgmcrater', 'dh_install', 'infocmp', 'scan-view-3.9', 'hbpldecode', 'fail2ban-regex', 'usb_printerid', 'gcc-nm', 'nad2bin', 'ppmtopj', 'qtdiag', 'gcr-viewer', 'x2goumount-session-mate', 'x86_64-linux-gnu-pkg-config', 'unity-control-center', 'mogrify-im6', 'pbmpage', 'ebrowse', 'dh_update_autotools_config', 'dh_auto_install', 'pdfdetach', 'xfce4-keyboard-settings', 'dbus-uuidgen', 'compose', 'ppmtoicr', 'hwloc-calc', 'ex'] ['dosfslabel', 'dumpe2fs', 'ntfsundelete', 'upstart-event-bridge', 'mkfs.bfs', 'iwspy', 'fsfreeze', 'apparmor_parser', 'ip6tables-save', 'findfs', 'mount.ntfs', 'telinit', 'restore', 'apm_available', 'reload', 'start', 'pccardctl', 'getpcaps', 'chcpu', 'stop', 'ntfslabel', 'killall5', 'upstart', 'get-quirk-options', 'udevadm', 'start-stop-daemon', 'key.dns_resolver', 'tune2fs', 'regdbdump', 'rtacct', 'halt', 'fsck.msdos', 'ifup', 'zramctl', 'rdump', 'swapoff', 'mkntfs', 'rtmon', 'installkernel', 'upstart-local-bridge', 'swapon', 'getcap', 'mntctl', 'mii-tool', 'getty', 'setvtrgb', 'fsck.nfs', 'runlevel', 'sfdisk', 'ntfscp', 'iptables-save', 'umount.udisks2', 'lsmod', 'e2fsck', 'mkfs.ntfs', 'on_ac_power', 'mkfs', 'fatlabel', 'e2undo', 'iwconfig', 'pivot_root', 'iptables-restore', 'hwclock', 'unix_chkpwd', 'mount.nfs4', 'sgdisk', 'poweroff', 'fixparts', 'mount.nfs', 'umount.nfs', 'logsave', 'tipc', 'rpc.statd', 'e2label', 'ifdown', 'isosize', 'wpa_action', 'swaplabel', 'reboot', 'partprobe', 'hdparm', 'fstrim', 'wpa_cli', 'pam_tally', 'ntfsresize', 'bridge', 'fsck.vfat', 'brltty-setup', 'mkfs.vfat', 'rmmod', 'pam_extrausers_update', 'insmod', 'ip6tables-restore', 'dump', 'mkswap', 'mount.fuse', 'mkfs.fat', 'lspcmcia', 'ifquery', 'ipmaddr', 'prime-switch', 'mke2fs', 'resolvconf', 'rarp', 'cgdisk', 'tc', 'capsh', 'rrestore', 'iwlist', 'iwevent', 'ntfsclone', 'dhclient-script', 'fsck.ext4', 'mkhomedir_helper', 'alsa', 'modprobe', 'mountall', 'xtables-multi', 'upstart-udev-bridge', 'iptunnel', 'crda', 'brltty', 'fsck.ext3', 'pam_extrausers_chkpwd', 'request-key', 'acpi_available', 'init', 'ldconfig.real', 'blkid', 'sm-notify', 'mkfs.cramfs', 'depmod', 'debugfs', 'restart', 'sulogin', 'upstart-file-bridge', 'gdisk', 'plymouthd', 'cfdisk', 'resize2fs', 'fsck.fat', 'ethtool', 'ip6tables', 'fdisk', 'showmount', 'sysctl', 'iptables', 'shutdown', 'modinfo', 'iw', 'switch_root', 'iwpriv', 'ldconfig', 'route', 'ctrlaltdel', 'upstart-dbus-bridge', 'losetup', 'fsck.ext2', 'fsck', 'mkdosfs', 'blkdiscard', 'fsck.cramfs', 'ureadahead', 'dhclient', 'badblocks', 'kbdrate', 'mkfs.ext3', 'initctl', 'mkfs.minix', 'prime-offload', 'rpcbind', 'osd_login', 'MAKEDEV', 'mkfs.ext4dev', 'create-uvm-dev-node', 'mount.ntfs-3g', 'fsck.ext4dev', 'fstab-decode', 'parted', 'mount.lowntfs-3g', 'iwgetid', 'mkfs.ext4', 'nameif', 'ip', 'wpa_supplicant', 'raw', 'setcap', 'shadowconfig', 'agetty', 'blockdev', 'upstart-socket-bridge', 'plipconfig', 'status', 'unix_update', 'u-d-c-print-pci-ids', 'pam_tally2', 'wipefs', 'fsck.minix', 'mkfs.msdos', 'ifconfig', 'slattach', 'umount.nfs4', 'runuser', 'dosfsck', 'e2image', 'mkfs.ext2'] ['ntfscmp', 'echo', 'tempfile', 'kmod', 'sync', 'sh', 'login', 'fgconsole', 'gunzip', 'mount', 'udevadm', 'sleep', 'gzip', 'lessfile', 'bzmore', 'ping6', 'open', 'bzcmp', 'ntfscluster', 'kbd_mode', 'df', 'fusermount', 'tailf', 'chown', 'mt', 'busybox', 'setfacl', 'ypdomainname', 'openvt', 'whiptail', 'which', 'zmore', 'bzip2recover', 'lsmod', 'setupcon', 'pwd', 'systemd-machine-id-setup', 'gzexe', 'findmnt', 'systemd-notify', 'fgrep', 'ntfsinfo', 'fuser', 'lowntfs-3g', 'loadkeys', 'setfont', 'netcat', 'run-parts', 'sh.distrib', 'efibootmgr', 'ntfsfallocate', 'date', 'zgrep', 'bzgrep', 'ed', 'bzcat', 'chacl', 'nc', 'netstat', 'ntfswipe', 'pidof', 'false', 'dnsdomainname', 'ntfs-3g.probe', 'cp', 'ntfs-3g', 'dash', 'bash', 'ntfs-3g.secaudit', 'keyctl', 'egrep', 'chmod', 'loginctl', 'ntfsmove', 'nano', 'lessecho', 'mountpoint', 'rnano', 'cat', 'systemd', 'hciconfig', 'mt-gnu', 'uname', 'ps', 'stty', 'zegrep', 'bzfgrep', 'ntfs-3g.usermap', 'systemctl', 'rbash', 'plymouth', 'bzegrep', 'more', 'su', 'lesspipe', 'ntfsls', 'rm', 'systemd-escape', 'static-sh', 'mv', 'kill', 'dumpkeys', 'bzless', 'vdir', 'systemd-tty-ask-password-agent', 'zfgrep', 'rmdir', 'tar', 'sed', 'zdiff', 'readlink', 'chgrp', 'touch', 'mkdir', 'ulockmgr_server', 'red', 'ln', 'journalctl', 'lesskey', 'systemd-tmpfiles', 'zcat', 'bunzip2', 'cpio', 'dir', 'networkctl', 'systemd-hwdb', 'nisdomainname', 'bzip2', 'zless', 'mktemp', 'systemd-inhibit', 'zcmp', 'unicode_start', 'systemd-ask-password', 'bzexe', 'hostname', 'grep', 'getfacl', 'ntfscat', 'znew', 'ip', 'less', 'ls', 'dd', 'zforce', 'ping', 'true', 'lsblk', 'ss', 'ntfstruncate', 'umount', 'bzdiff', 'domainname', 'wdctl', 'ntfsfix', 'uncompress', 'mknod', 'nc.openbsd', 'chvt', 'dmesg'] ['espdiff', 'gnome-mines', 'gnome-mahjongg', 'sol', 'gnome-sudoku'] [] Warning accessing /snap/bin gives errors: [Errno 2] No such file or directory: '/snap/bin' Warning accessing /home/dsu/Soft/Paraview/ParaView-5.5.0/bin gives errors: [Errno 2] No such file or directory: '/home/dsu/Soft/Paraview/ParaView-5.5.0/bin' ['mpeg2encode', 'visitprotocol', 'xml2cmake', 'makemili', 'text2polys', 'run_doxygen', 'frontendlauncher', 'xml2window', 'surfcomp', 'Doxyfile', 'xmltest', 'visit0000.session', 'time_annotation', 'visit_plugin', 'xmledit', 'xml2atts', 'curv3dprep', 'visit_transition', 'regen-ajp', 'visit_composite', 'visit', 'xml2plugin', 'xml2python', 'frontendlauncher.py', 'visitconvert', 'xml2avt', 'mkgrdbl', 'xml2info', 'xml2java', 'visit0000.session.gui'] ['codecov', 'tselect', 'icpc', 'compilervars.csh', 'xild', 'map_opts', 'gdb-ia', 'ifortvars.sh', 'ifortvars.csh', 'profdcg', 'ifort', 'proforder', 'compilervars.sh', 'gcore-ia', 'iccvars.sh', 'xiar', 'icc', 'iccvars.csh', 'profmerge', 'fpp'] Warning accessing /home/dsu/Soft/Paraview/ParaView-5.5.0/bin gives errors: [Errno 2] No such file or directory: '/home/dsu/Soft/Paraview/ParaView-5.5.0/bin' ['mpeg2encode', 'visitprotocol', 'xml2cmake', 'makemili', 'text2polys', 'run_doxygen', 'frontendlauncher', 'xml2window', 'surfcomp', 'Doxyfile', 'xmltest', 'visit0000.session', 'time_annotation', 'visit_plugin', 'xmledit', 'xml2atts', 'curv3dprep', 'visit_transition', 'regen-ajp', 'visit_composite', 'visit', 'xml2plugin', 'xml2python', 'frontendlauncher.py', 'visitconvert', 'xml2avt', 'mkgrdbl', 'xml2info', 'xml2java', 'visit0000.session.gui'] ['codecov', 'tselect', 'icpc', 'compilervars.csh', 'xild', 'map_opts', 'gdb-ia', 'ifortvars.sh', 'ifortvars.csh', 'profdcg', 'ifort', 'proforder', 'compilervars.sh', 'gcore-ia', 'iccvars.sh', 'xiar', 'icc', 'iccvars.csh', 'profmerge', 'fpp'] Path provided by --with-executables-search-path ['win32feutils.dll', 'win32fe.exe'] Checking for program /Developer/NVIDIA/CUDA-6.5/bin/nvcc...not found Checking for program /home/dsu/Soft/PETSc/petsc-3.13.2/lib/petsc/bin/win32fe/nvcc...not found Unable to find programs ['nvcc'] providing listing of each search directory to help debug Path provided in Python program Warning accessing /Developer/NVIDIA/CUDA-6.5/bin gives errors: [Errno 2] No such file or directory: '/Developer/NVIDIA/CUDA-6.5/bin' Path provided by --with-executables-search-path ['win32feutils.dll', 'win32fe.exe'] Checking for program /usr/local/cuda/bin/nvcc...not found Checking for program /home/dsu/Soft/PETSc/petsc-3.13.2/lib/petsc/bin/win32fe/nvcc...not found Unable to find programs ['nvcc'] providing listing of each search directory to help debug Path provided in Python program Warning accessing /usr/local/cuda/bin gives errors: [Errno 2] No such file or directory: '/usr/local/cuda/bin' Path provided by --with-executables-search-path ['win32feutils.dll', 'win32fe.exe'] ================================================================================ TEST checkCUDAPreprocessor from config.setCompilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/setCompilers.py:750) TESTING: checkCUDAPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:750) Locate a functional CUDA preprocessor ================================================================================ TEST checkCxxCompiler from config.setCompilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/setCompilers.py:849) TESTING: checkCxxCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:849) Locate a functional Cxx compiler Checking for program /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx...found Defined make macro "CXX" to "/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx" Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.utilities.missing /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.utilities.missing /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx -o /tmp/petsc-oluu3nld/config.setCompilers/conftest /tmp/petsc-oluu3nld/config.setCompilers/conftest.o Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.utilities.missing /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx -o /tmp/petsc-oluu3nld/config.setCompilers/conftest /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.utilities.missing /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx -o /tmp/petsc-oluu3nld/config.setCompilers/conftest /tmp/petsc-oluu3nld/config.setCompilers/conftest.o Testing executable /tmp/petsc-oluu3nld/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-oluu3nld/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-oluu3nld/config.setCompilers/conftest Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx --version stdout: g++ (Ubuntu 5.4.0-6ubuntu1~16.04.12) 5.4.0 20160609 Copyright (C) 2015 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. ================================================================================ TEST checkCxxPreprocessor from config.setCompilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/setCompilers.py:890) TESTING: checkCxxPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:890) Locate a functional Cxx preprocessor Checking for program /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx...found Defined make macro "CXXPP" to "/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx -E -I/tmp/petsc-oluu3nld/config.setCompilers /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc Preprocess stderr before filtering:: Preprocess stderr after filtering:: ================================================================================ TEST checkFortranCompiler from config.setCompilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/setCompilers.py:991) TESTING: checkFortranCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:991) Locate a functional Fortran compiler Checking for program /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90...found Defined make macro "FC" to "/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90" Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.libraries /tmp/petsc-oluu3nld/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.libraries /tmp/petsc-oluu3nld/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -o /tmp/petsc-oluu3nld/config.setCompilers/conftest /tmp/petsc-oluu3nld/config.setCompilers/conftest.o Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.libraries /tmp/petsc-oluu3nld/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -o /tmp/petsc-oluu3nld/config.setCompilers/conftest /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.libraries /tmp/petsc-oluu3nld/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -o /tmp/petsc-oluu3nld/config.setCompilers/conftest /tmp/petsc-oluu3nld/config.setCompilers/conftest.o Testing executable /tmp/petsc-oluu3nld/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-oluu3nld/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-oluu3nld/config.setCompilers/conftest Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 --version stdout: GNU Fortran (Ubuntu 5.4.0-6ubuntu1~16.04.12) 5.4.0 20160609 Copyright (C) 2015 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING ================================================================================ TEST checkFortranPreprocessor from config.setCompilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/setCompilers.py:1028) TESTING: checkFortranPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:1028) Locate a functional Fortran preprocessor Checking for program /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90...found Defined make macro "FPP" to "/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -E" Deleting "FPP" Checking for program /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90...found Defined make macro "FPP" to "/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 --use cpp32" Deleting "FPP" ================================================================================ TEST checkFortranComments from config.setCompilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/setCompilers.py:1050) TESTING: checkFortranComments from config.setCompilers(config/BuildSystem/config/setCompilers.py:1050) Make sure fortran comment "!" works Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.libraries /tmp/petsc-oluu3nld/config.setCompilers/conftest.F90 Successful compile: Source: program main ! comment end Fortran comments can use ! in column 1 ================================================================================ TEST checkLargeFileIO from config.setCompilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/setCompilers.py:1181) TESTING: checkLargeFileIO from config.setCompilers(config/BuildSystem/config/setCompilers.py:1181) ================================================================================ TEST checkArchiver from config.setCompilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/setCompilers.py:1280) TESTING: checkArchiver from config.setCompilers(config/BuildSystem/config/setCompilers.py:1280) Check that the archiver exists and can make a library usable by the compiler Running Executable WITHOUT threads to time it out Executing: ar -V stdout: GNU ar (GNU Binutils for Ubuntu) 2.26.1 Copyright (C) 2015 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Running Executable WITHOUT threads to time it out Executing: ar -V stdout: GNU ar (GNU Binutils for Ubuntu) 2.26.1 Copyright (C) 2015 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/ar...not found Checking for program /home/dsu/Soft/PETSc/petsc-3.10.5/linux-gnu-opt/bin/ar...not found Checking for program /usr/local/sbin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/sbin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/ranlib...not found Checking for program /home/dsu/Soft/PETSc/petsc-3.10.5/linux-gnu-opt/bin/ranlib...not found Checking for program /usr/local/sbin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/sbin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" Running Executable WITHOUT threads to time it out Executing: /usr/bin/ar cr /tmp/petsc-oluu3nld/config.setCompilers/libconf1.a /tmp/petsc-oluu3nld/config.setCompilers/conf1.o Running Executable WITHOUT threads to time it out Executing: /usr/bin/ranlib -c /tmp/petsc-oluu3nld/config.setCompilers/libconf1.a Possible ERROR while running ranlib: stderr: /usr/bin/ranlib: invalid option -- 'c' Ranlib is not functional with your archiver. Try --with-ranlib=true if ranlib is unnecessary. Running Executable WITHOUT threads to time it out Executing: ar -V stdout: GNU ar (GNU Binutils for Ubuntu) 2.26.1 Copyright (C) 2015 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Running Executable WITHOUT threads to time it out Executing: ar -V stdout: GNU ar (GNU Binutils for Ubuntu) 2.26.1 Copyright (C) 2015 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/ar...not found Checking for program /home/dsu/Soft/PETSc/petsc-3.10.5/linux-gnu-opt/bin/ar...not found Checking for program /usr/local/sbin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/sbin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/ranlib...not found Checking for program /home/dsu/Soft/PETSc/petsc-3.10.5/linux-gnu-opt/bin/ranlib...not found Checking for program /usr/local/sbin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/sbin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib" Running Executable WITHOUT threads to time it out Executing: /usr/bin/ar cr /tmp/petsc-oluu3nld/config.setCompilers/libconf1.a /tmp/petsc-oluu3nld/config.setCompilers/conf1.o Running Executable WITHOUT threads to time it out Executing: /usr/bin/ranlib /tmp/petsc-oluu3nld/config.setCompilers/libconf1.a Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -o /tmp/petsc-oluu3nld/config.setCompilers/conftest /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -L/tmp/petsc-oluu3nld/config.setCompilers -lconf1 Defined make macro "AR_FLAGS" to "cr" Defined make macro "AR_LIB_SUFFIX" to "a" ================================================================================ TEST checkSharedLinker from config.setCompilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/setCompilers.py:1394) TESTING: checkSharedLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1394) Check that the linker can produce shared libraries Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Checking shared linker /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc using flags ['-shared'] Checking for program /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc...found Defined make macro "LD_SHARED" to "/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc" Trying C compiler flag Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -o /tmp/petsc-oluu3nld/config.setCompilers/conftest -shared /tmp/petsc-oluu3nld/config.setCompilers/conftest.o Valid C linker flag -shared Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -o /tmp/petsc-oluu3nld/config.setCompilers/libconftest.so -shared /tmp/petsc-oluu3nld/config.setCompilers/conftest.o Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(void); int main() { int ret = foo(); if (ret) {} ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -o /tmp/petsc-oluu3nld/config.setCompilers/conftest /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -L/tmp/petsc-oluu3nld/config.setCompilers -lconftest Using shared linker /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc with flags ['-shared'] and library extension so Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux ================================================================================ TEST checkPIC from config.setCompilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/setCompilers.py:1128) TESTING: checkPIC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1128) Determine the PIC option for each compiler Trying Cxx for PIC code without any compiler flag Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.utilities.missing /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.utilities.missing /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -o /tmp/petsc-oluu3nld/config.setCompilers/libconftest.so -shared /tmp/petsc-oluu3nld/config.setCompilers/conftest.o Accepted Cxx PIC code without compiler flag Trying FC for PIC code without any compiler flag Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.libraries /tmp/petsc-oluu3nld/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.libraries /tmp/petsc-oluu3nld/config.setCompilers/conftest.F90 Successful compile: Source: function foo(a) real:: a,x,bar common /xx/ x x=a foo = bar(x) end Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -o /tmp/petsc-oluu3nld/config.setCompilers/libconftest.so -shared /tmp/petsc-oluu3nld/config.setCompilers/conftest.o Accepted FC PIC code without compiler flag ================================================================================ TEST checkSharedLinkerPaths from config.setCompilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/setCompilers.py:1506) TESTING: checkSharedLinkerPaths from config.setCompilers(config/BuildSystem/config/setCompilers.py:1506) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -V Trying C linker flag -Wl,-rpath, Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -o /tmp/petsc-oluu3nld/config.setCompilers/conftest -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2 /tmp/petsc-oluu3nld/config.setCompilers/conftest.o Valid C linker flag -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2 Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -V Trying Cxx linker flag -Wl,-rpath, Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.utilities.missing /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx -o /tmp/petsc-oluu3nld/config.setCompilers/conftest -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2 /tmp/petsc-oluu3nld/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2 Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -V Trying FC linker flag -Wl,-rpath, Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.libraries /tmp/petsc-oluu3nld/config.setCompilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -o /tmp/petsc-oluu3nld/config.setCompilers/conftest -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2 /tmp/petsc-oluu3nld/config.setCompilers/conftest.o Valid FC linker flag -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2 ================================================================================ TEST checkLibC from config.setCompilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/setCompilers.py:1541) TESTING: checkLibC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1541) Test whether we need to explicitly include libc in shared linking - Mac OSX requires an explicit reference to libc for shared linking Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {void *chunk = malloc(31); free(chunk); return 0;} Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -o /tmp/petsc-oluu3nld/config.setCompilers/libconftest.so -shared /tmp/petsc-oluu3nld/config.setCompilers/conftest.o Shared linking does not require an explicit libc reference ================================================================================ TEST checkDynamicLinker from config.setCompilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/setCompilers.py:1587) TESTING: checkDynamicLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1587) Check that the linker can dynamicaly load shared libraries Checking for header: dlfcn.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -E -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers /tmp/petsc-oluu3nld/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_DLFCN_H" to "1" Checking for functions [dlopen dlsym dlclose] in library ['dl'] [] Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.libraries/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries /tmp/petsc-oluu3nld/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } char dlsym(); static void _check_dlsym() { dlsym(); } char dlclose(); static void _check_dlclose() { dlclose(); } int main() { _check_dlopen(); _check_dlsym(); _check_dlclose();; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -o /tmp/petsc-oluu3nld/config.libraries/conftest /tmp/petsc-oluu3nld/config.libraries/conftest.o -ldl Defined "HAVE_LIBDL" to "1" Adding ['dl'] to LIBS Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Checking dynamic linker /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc using flags ['-shared'] Checking for program /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc...found Defined make macro "DYNAMICLINKER" to "/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc" Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -o /tmp/petsc-oluu3nld/config.setCompilers/conftest -shared /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -ldl Valid C linker flag -shared Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("test");return 0;} Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -o /tmp/petsc-oluu3nld/config.setCompilers/libconftest.so -shared /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -ldl Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { void *handle = dlopen("/tmp/petsc-oluu3nld/config.setCompilers/libconftest.so", 0); int (*foo)(void) = (int (*)(void)) dlsym(handle, "foo"); if (!foo) { printf("Could not load symbol\n"); return -1; } if ((*foo)()) { printf("Invalid return from foo()\n"); return -1; } if (dlclose(handle)) { printf("Could not close library\n"); return -1; } ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -o /tmp/petsc-oluu3nld/config.setCompilers/conftest /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -ldl Using dynamic linker /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc with flags ['-shared'] and library extension so ================================================================================ TEST output from config.setCompilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/setCompilers.py:1636) TESTING: output from config.setCompilers(config/BuildSystem/config/setCompilers.py:1636) Output module data as defines and substitutions Substituting "CC" with "/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc" Substituting "CFLAGS" with "" Defined make macro "CC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "CPP" with "/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -E" Substituting "CPPFLAGS" with "" Substituting "CXX" with "/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx" Substituting "CXX_CXXFLAGS" with "" Substituting "CXXFLAGS" with "" Substituting "CXX_LINKER_SLFLAG" with "-Wl,-rpath," Substituting "CXXPP" with "/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx -E" Substituting "CXXPPFLAGS" with "" Substituting "FC" with "/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90" Substituting "FFLAGS" with "" Defined make macro "FC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "LDFLAGS" with "" Substituting "LIBS" with "-ldl " Substituting "SHARED_LIBRARY_FLAG" with "-shared" Defined make macro "C_VERSION" to "gcc (Ubuntu 5.4.0-6ubuntu1~16.04.12) 5.4.0 20160609" Defined make macro "MPICC_SHOW" to "gcc -fPIC -fstack-protector -O3 -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -Wl,--enable-new-dtags -lmpi" Defined make macro "Cxx_VERSION" to "g++ (Ubuntu 5.4.0-6ubuntu1~16.04.12) 5.4.0 20160609" Defined make macro "MPICXX_SHOW" to "g++ -fstack-protector -O3 -fPIC -std=gnu++11 -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lmpicxx -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -Wl,--enable-new-dtags -lmpi" Defined make macro "FC_VERSION" to "GNU Fortran (Ubuntu 5.4.0-6ubuntu1~16.04.12) 5.4.0 20160609" Defined make macro "MPIFC_SHOW" to "gfortran -fPIC -ffree-line-length-0 -O3 -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lmpifort -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -Wl,--enable-new-dtags -lmpi" ================================================================================ TEST configureCompilerFlags from config.compilerFlags(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/compilerFlags.py:72) TESTING: configureCompilerFlags from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:72) Get the default compiler flags Trying C compiler flag -Wall Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries -Wall /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wall Trying C compiler flag -Wwrite-strings Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries -Wall -Wwrite-strings /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wwrite-strings Trying C compiler flag -Wno-strict-aliasing Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wno-strict-aliasing Trying C compiler flag -Wno-unknown-pragmas Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wno-unknown-pragmas Trying C compiler flag -fstack-protector Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fstack-protector Trying C compiler flag -mfp16-format=ieee Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -mfp16-format=ieee /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 1 stderr: gcc: error: unrecognized command line option ‘-mfp16-format=ieee’ Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -mfp16-format=ieee due to nonzero status from link Rejecting compiler flag -mfp16-format=ieee due to gcc: error: unrecognized command line option ‘-mfp16-format=ieee’ PETSc Error: No output file produced Rejected C compiler flag -mfp16-format=ieee Trying C compiler flag -fvisibility=hidden Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fvisibility=hidden Trying C compiler flag -O3 Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -O3 Trying Cxx compiler flag -Wall Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.utilities.missing -Wall /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wall Trying Cxx compiler flag -Wwrite-strings Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.utilities.missing -Wall -Wwrite-strings /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wwrite-strings Trying Cxx compiler flag -Wno-strict-aliasing Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wno-strict-aliasing Trying Cxx compiler flag -Wno-unknown-pragmas Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wno-unknown-pragmas Trying Cxx compiler flag -fstack-protector Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -fstack-protector Trying Cxx compiler flag -fvisibility=hidden Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -fvisibility=hidden Trying Cxx compiler flag -O3 Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -O3 Trying FC compiler flag -Wall Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.libraries -Wall /tmp/petsc-oluu3nld/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag -Wall Trying FC compiler flag -ffree-line-length-0 Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.libraries -Wall -ffree-line-length-0 /tmp/petsc-oluu3nld/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag -ffree-line-length-0 Trying FC compiler flag -Wno-unused-dummy-argument Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.libraries -Wall -ffree-line-length-0 -Wno-unused-dummy-argument /tmp/petsc-oluu3nld/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag -Wno-unused-dummy-argument Trying FC compiler flag -O3 Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.libraries -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-oluu3nld/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag -O3 Defined make macro "C_DEPFLAGS" to "-MMD -MP" Defined make macro "CXX_DEPFLAGS" to "-MMD -MP" Accepted C99 compile flag: Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc --help | head -n 20 stdout: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and ================================================================================ TEST checkRestrict from config.compilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/compilers.py:150) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:150) Check for the C/CXX restrict keyword Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -V Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.compilers/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-oluu3nld/config.compilers/conftest.c: In function ‘main’: /tmp/petsc-oluu3nld/config.compilers/conftest.c:5:20: warning: unused variable ‘x’ [-Wunused-variable] float * __restrict x;; ^ Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set C restrict keyword to __restrict Defined "C_RESTRICT" to "__restrict" ================================================================================ TEST checkCFormatting from config.compilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/compilers.py:405) TESTING: checkCFormatting from config.compilers(config/BuildSystem/config/compilers.py:405) Activate format string checking if using the GNU compilers ================================================================================ TEST checkCInline from config.compilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/compilers.py:120) TESTING: checkCInline from config.compilers(config/BuildSystem/config/compilers.py:120) Check for C inline keyword Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.compilers/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set C Inline keyword to inline Defined "C_INLINE" to "inline" ================================================================================ TEST checkDynamicLoadFlag from config.compilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/compilers.py:416) TESTING: checkDynamicLoadFlag from config.compilers(config/BuildSystem/config/compilers.py:416) Checks that dlopen() takes RTLD_XXX, and defines PETSC_HAVE_RTLD_XXX if it does Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.compilers/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LAZY);dlopen(libname, RTLD_NOW);dlopen(libname, RTLD_LOCAL);dlopen(libname, RTLD_GLOBAL); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -o /tmp/petsc-oluu3nld/config.compilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_LAZY" to "1" Defined "HAVE_RTLD_NOW" to "1" Defined "HAVE_RTLD_LOCAL" to "1" Defined "HAVE_RTLD_GLOBAL" to "1" ================================================================================ TEST checkCLibraries from config.compilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/compilers.py:214) TESTING: checkCLibraries from config.compilers(config/BuildSystem/config/compilers.py:214) Determines the libraries needed to link with C compiled code Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.compilers/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void asub(void) {char s[16];printf("testing %s",s);} Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -c -o /tmp/petsc-oluu3nld/config.compilers/conftest.o -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.F90 Successful compile: Source: program main print*,'testing' stop end Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -o /tmp/petsc-oluu3nld/config.compilers/conftest -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.o /tmp/petsc-oluu3nld/config.compilers/confc.o -ldl C libraries are not needed when using Fortran linker Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.compilers/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void asub(void) {char s[16];printf("testing %s",s);} Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx -c -o /tmp/petsc-oluu3nld/config.compilers/conftest.o -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx -o /tmp/petsc-oluu3nld/config.compilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.o /tmp/petsc-oluu3nld/config.compilers/confc.o -ldl C libraries are not needed when using C++ linker ================================================================================ TEST checkDependencyGenerationFlag from config.compilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/compilers.py:1363) TESTING: checkDependencyGenerationFlag from config.compilers(config/BuildSystem/config/compilers.py:1363) Check if -MMD works for dependency generation, and add it if it does Trying C compiler flag -MMD -MP Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -MMD -MP /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Trying Cxx compiler flag -MMD -MP Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -MMD -MP /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ================================================================================ TEST checkC99Flag from config.compilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/compilers.py:1408) TESTING: checkC99Flag from config.compilers(config/BuildSystem/config/compilers.py:1408) Check for -std=c99 or equivalent flag Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-oluu3nld/config.setCompilers/conftest.c: In function ‘main’: /tmp/petsc-oluu3nld/config.setCompilers/conftest.c:7:11: warning: variable ‘x’ set but not used [-Wunused-but-set-variable] float x[2],y; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { float x[2],y; y = FLT_ROUNDS; // c++ comment int j = 2; for (int i=0; i<2; i++){ x[i] = i*j*y; } ; return 0; } Defined "HAVE_C99" to "1" Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx --help | head -n 20 stdout: Usage: g++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and ================================================================================ TEST checkRestrict from config.compilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/compilers.py:150) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:150) Check for the C/CXX restrict keyword Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -V Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx -c -o /tmp/petsc-oluu3nld/config.compilers/conftest.o -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.cc Possible ERROR while running compiler: stderr: /tmp/petsc-oluu3nld/config.compilers/conftest.cc: In function ‘int main()’: /tmp/petsc-oluu3nld/config.compilers/conftest.cc:5:20: warning: unused variable ‘x’ [-Wunused-variable] float * __restrict x;; ^ Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set Cxx restrict keyword to __restrict Defined "CXX_RESTRICT" to "__restrict" ================================================================================ TEST checkCxxOptionalExtensions from config.compilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/compilers.py:435) TESTING: checkCxxOptionalExtensions from config.compilers(config/BuildSystem/config/compilers.py:435) Check whether the C++ compiler (IBM xlC, OSF5) need special flag for .c files which contain C++ Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } ================================================================================ TEST checkCxxInline from config.compilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/compilers.py:135) TESTING: checkCxxInline from config.compilers(config/BuildSystem/config/compilers.py:135) Check for C++ inline keyword Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx -c -o /tmp/petsc-oluu3nld/config.compilers/conftest.o -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set Cxx Inline keyword to inline Defined "CXX_INLINE" to "inline" ================================================================================ TEST checkCxxLibraries from config.compilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/compilers.py:547) TESTING: checkCxxLibraries from config.compilers(config/BuildSystem/config/compilers.py:547) Determines the libraries needed to link with C++ from C and Fortran Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx -c -o /tmp/petsc-oluu3nld/config.compilers/conftest.o -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.compilers/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -o /tmp/petsc-oluu3nld/config.compilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.o /tmp/petsc-oluu3nld/config.compilers/confc.o -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-oluu3nld/config.compilers/confc.o: In function `asub()': conftest.cc:(.text+0x7): undefined reference to `__cxa_allocate_exception' conftest.cc:(.text+0xe): undefined reference to `typeinfo for int' conftest.cc:(.text+0x1e): undefined reference to `__cxa_throw' conftest.cc:(.text+0x2c): undefined reference to `__cxa_begin_catch' conftest.cc:(.text+0x33): undefined reference to `std::cout' conftest.cc:(.text+0x3f): undefined reference to `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)' conftest.cc:(.text+0x4d): undefined reference to `__cxa_end_catch' conftest.cc:(.text+0x45): undefined reference to `__cxa_end_catch' /tmp/petsc-oluu3nld/config.compilers/confc.o: In function `_GLOBAL__sub_I_conftest.cc': conftest.cc:(.text.startup+0xc): undefined reference to `std::ios_base::Init::Init()' conftest.cc:(.text.startup+0x13): undefined reference to `std::ios_base::Init::~Init()' /tmp/petsc-oluu3nld/config.compilers/confc.o:(.data.DW.ref._ZTIi[DW.ref._ZTIi]+0x0): undefined reference to `typeinfo for int' /tmp/petsc-oluu3nld/config.compilers/confc.o:(.data.DW.ref.__gxx_personality_v0[DW.ref.__gxx_personality_v0]+0x0): undefined reference to `__gxx_personality_v0' collect2: error: ld returned 1 exit status Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx -c -o /tmp/petsc-oluu3nld/config.compilers/conftest.o -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.compilers/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -o /tmp/petsc-oluu3nld/config.compilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.o /tmp/petsc-oluu3nld/config.compilers/confc.o -lstdc++ -ldl compilers: C++ requires -lstdc++ to link with C compiler Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx -c -o /tmp/petsc-oluu3nld/config.compilers/conftest.o -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -c -o /tmp/petsc-oluu3nld/config.compilers/conftest.o -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.F90 Successful compile: Source: program main print*,'testing' stop end Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -o /tmp/petsc-oluu3nld/config.compilers/conftest -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.o /tmp/petsc-oluu3nld/config.compilers/confc.o -lstdc++ -ldl C++ libraries are not needed when using FC linker ================================================================================ TEST checkCxxDialect from config.compilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/compilers.py:463) TESTING: checkCxxDialect from config.compilers(config/BuildSystem/config/compilers.py:463) Determine the Cxx dialect supported by the compiler [and correspoding compiler option - if any]. -with-cxx-dialect can take options: auto: use highest dialect configure can determine cxx17: [future?] cxx14: gnu++14 or c++14 cxx11: gnu++11 or c++11 0: disable CxxDialect check and use compiler default checkCxxDialect: checking CXX11 with flag: Defined "HAVE_CXX_DIALECT_CXX11" to "1" Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include template constexpr T Cubed( T x ) { return x*x*x; } int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); std::cout << x; ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx -V ================================================================================ TEST checkFortranNameMangling from config.compilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/compilers.py:854) TESTING: checkFortranNameMangling from config.compilers(config/BuildSystem/config/compilers.py:854) Checks Fortran name mangling, and defines HAVE_FORTRAN_UNDERSCORE, HAVE_FORTRAN_NOUNDERSCORE, HAVE_FORTRAN_CAPS Testing Fortran mangling type underscore with code void d1chk_(void){return;} Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.compilers/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1chk_(void){return;} Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -c -o /tmp/petsc-oluu3nld/config.compilers/conftest.o -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.F90 Successful compile: Source: program main call d1chk() end Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -o /tmp/petsc-oluu3nld/config.compilers/conftest -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.o /tmp/petsc-oluu3nld/config.compilers/confc.o -lstdc++ -ldl compilers: Fortran name mangling is underscore Defined "HAVE_FORTRAN_UNDERSCORE" to "1" Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 --version stdout: GNU Fortran (Ubuntu 5.4.0-6ubuntu1~16.04.12) 5.4.0 20160609 Copyright (C) 2015 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING Defined "FORTRAN_CHARLEN_T" to "int" ================================================================================ TEST checkFortranNameManglingDouble from config.compilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/compilers.py:892) TESTING: checkFortranNameManglingDouble from config.compilers(config/BuildSystem/config/compilers.py:892) Checks if symbols containing an underscore append an extra underscore, and defines HAVE_FORTRAN_UNDERSCORE_UNDERSCORE if necessary Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.compilers/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1_chk__(void){return;} Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -c -o /tmp/petsc-oluu3nld/config.compilers/conftest.o -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.F90 Successful compile: Source: program main call d1_chk() end Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -o /tmp/petsc-oluu3nld/config.compilers/conftest -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.o /tmp/petsc-oluu3nld/config.compilers/confc.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-oluu3nld/config.compilers/conftest.o: In function `main': conftest.F90:(.text.startup+0x1d): undefined reference to `d1_chk_' collect2: error: ld returned 1 exit status ================================================================================ TEST checkFortranLibraries from config.compilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/compilers.py:902) TESTING: checkFortranLibraries from config.compilers(config/BuildSystem/config/compilers.py:902) Substitutes for FLIBS the libraries needed to link with Fortran This macro is intended to be used in those situations when it is necessary to mix, e.g. C++ and Fortran 77, source code into a single program or shared library. For example, if object files from a C++ and Fortran 77 compiler must be linked together, then the C++ compiler/linker must be used for linking (since special C++-ish things need to happen at link time like calling global constructors, instantiating templates, enabling exception support, etc.). However, the Fortran 77 intrinsic and run-time libraries must be linked in as well, but the C++ compiler/linker does not know how to add these Fortran 77 libraries. This code was translated from the autoconf macro which was packaged in its current form by Matthew D. Langston . However, nearly all of this macro came from the OCTAVE_FLIBS macro in octave-2.0.13/aclocal.m4, and full credit should go to John W. Eaton for writing this extremely useful macro. Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -c -o /tmp/petsc-oluu3nld/config.compilers/conftest.o -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.F90 Successful compile: Source: program main #include call MPI_Allreduce() end Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -o /tmp/petsc-oluu3nld/config.compilers/conftest -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.o -lstdc++ -ldl Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -c -o /tmp/petsc-oluu3nld/config.compilers/conftest.o -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.F90 Successful compile: Source: subroutine asub() print*,'testing' call MPI_Allreduce() return end Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.compilers/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern void asub_(void); int main(int argc,char **args) { asub_(); return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -o /tmp/petsc-oluu3nld/config.compilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.o /tmp/petsc-oluu3nld/config.compilers/confc.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-oluu3nld/config.compilers/confc.o: In function `asub_': conftest.F90:(.text+0x2f): undefined reference to `_gfortran_st_write' conftest.F90:(.text+0x43): undefined reference to `_gfortran_transfer_character_write' conftest.F90:(.text+0x4b): undefined reference to `_gfortran_st_write_done' conftest.F90:(.text+0x5a): undefined reference to `mpi_allreduce_' collect2: error: ld returned 1 exit status Fortran code cannot directly be linked with C linker, therefore will determine needed Fortran libraries Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -c -o /tmp/petsc-oluu3nld/config.compilers/conftest.o -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.F90 Successful compile: Source: program main end Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -o /tmp/petsc-oluu3nld/config.compilers/conftest -v -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.o -lstdc++ -ldl stdout: mpifort for MPICH version 3.3.2 Possible ERROR while running linker: stdout: mpifort for MPICH version 3.3.2stderr: Driving: gfortran -fPIC -ffree-line-length-0 -O3 -o /tmp/petsc-oluu3nld/config.compilers/conftest -v -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.o -lstdc++ -ldl -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lmpifort -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -Wl,--enable-new-dtags -lmpi -l gfortran -l m -shared-libgcc Using built-in specs. COLLECT_GCC=gfortran COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/5/lto-wrapper Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 5.4.0-6ubuntu1~16.04.12' --with-bugurl=file:///usr/share/doc/gcc-5/README.Bugs --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-5 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx --enable-plugin --with-system-zlib --disable-browser-plugin --enable-java-awt=gtk --enable-gtk-cairo --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-5-amd64/jre --enable-java-home --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-5-amd64 --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-5-amd64 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --enable-objc-gc --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 5.4.0 20160609 (Ubuntu 5.4.0-6ubuntu1~16.04.12) Reading specs from /usr/lib/gcc/x86_64-linux-gnu/5/libgfortran.spec rename spec lib to liborig COLLECT_GCC_OPTIONS='-fPIC' '-ffree-line-length-0' '-O3' '-o' '/tmp/petsc-oluu3nld/config.compilers/conftest' '-v' '-Wall' '-ffree-line-length-0' '-Wno-unused-dummy-argument' '-O3' '-I' '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include' '-I' '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include' '-L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib' '-shared-libgcc' '-mtune=generic' '-march=x86-64' COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/5/:/usr/lib/gcc/x86_64-linux-gnu/5/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/5/:/usr/lib/gcc/x86_64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/5/:/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/5/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/5/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-fPIC' '-ffree-line-length-0' '-O3' '-o' '/tmp/petsc-oluu3nld/config.compilers/conftest' '-v' '-Wall' '-ffree-line-length-0' '-Wno-unused-dummy-argument' '-O3' '-I' '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include' '-I' '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include' '-L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib' '-shared-libgcc' '-mtune=generic' '-march=x86-64' /usr/lib/gcc/x86_64-linux-gnu/5/collect2 -plugin /usr/lib/gcc/x86_64-linux-gnu/5/liblto_plugin.so -plugin-opt=/usr/lib/gcc/x86_64-linux-gnu/5/lto-wrapper -plugin-opt=-fresolution=/tmp/ccETTmac.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lquadmath -plugin-opt=-pass-through=-lm -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --sysroot=/ --build-id --eh-frame-hdr -m elf_x86_64 --hash-style=gnu --as-needed -dynamic-linker /lib64/ld-linux-x86-64.so.2 -z relro -o /tmp/petsc-oluu3nld/config.compilers/conftest /usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/crt1.o /usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/5/crtbegin.o -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/5/../../.. /tmp/petsc-oluu3nld/config.compilers/conftest.o -lstdc++ -ldl -lmpifort -rpath /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib --enable-new-dtags -lmpi -lgfortran -lm -lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-linux-gnu/5/crtend.o /usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/crtn.o compilers: Checking arg mpifort compilers: Unknown arg mpifort compilers: Checking arg for compilers: Unknown arg for compilers: Checking arg MPICH compilers: Unknown arg MPICH compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 3.3.2 compilers: Unknown arg 3.3.2 compilers: Checking arg Driving: compilers: Unknown arg Driving: compilers: Checking arg gfortran compilers: Unknown arg gfortran compilers: Checking arg -fPIC compilers: Unknown arg -fPIC compilers: Checking arg -ffree-line-length-0 compilers: Unknown arg -ffree-line-length-0 compilers: Checking arg -O3 compilers: Unknown arg -O3 compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/petsc-oluu3nld/config.compilers/conftest compilers: Unknown arg /tmp/petsc-oluu3nld/config.compilers/conftest compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg -Wall compilers: Unknown arg -Wall compilers: Checking arg -ffree-line-length-0 compilers: Unknown arg -ffree-line-length-0 compilers: Checking arg -Wno-unused-dummy-argument compilers: Unknown arg -Wno-unused-dummy-argument compilers: Checking arg -O3 compilers: Unknown arg -O3 compilers: Checking arg /tmp/petsc-oluu3nld/config.compilers/conftest.o compilers: Unknown arg /tmp/petsc-oluu3nld/config.compilers/conftest.o compilers: Checking arg -lstdc++ compilers: Found library: -lstdc++ compilers: Checking arg -ldl compilers: Found library: -ldl compilers: Checking arg -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include compilers: Found include directory: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include compilers: Checking arg -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include compilers: Found include directory: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include compilers: Checking arg -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib compilers: Found library directory: -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib compilers: Checking arg -lmpifort compilers: Found library: -lmpifort compilers: Checking arg -Wl,-rpath compilers: Unknown arg -Wl,-rpath compilers: Checking arg -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib compilers: Unknown arg -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib compilers: Checking arg -Wl,--enable-new-dtags compilers: Unknown arg -Wl,--enable-new-dtags compilers: Checking arg -lmpi compilers: Found library: -lmpi compilers: Checking arg -l compilers: Found canonical library: -lgfortran compilers: Checking arg -l compilers: Found canonical library: -lm compilers: Checking arg -shared-libgcc compilers: Unknown arg -shared-libgcc compilers: Checking arg Using compilers: Unknown arg Using compilers: Checking arg built-in compilers: Unknown arg built-in compilers: Checking arg specs. compilers: Unknown arg specs. compilers: Checking arg COLLECT_GCC=gfortran compilers: Unknown arg COLLECT_GCC=gfortran compilers: Checking arg COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/5/lto-wrapper compilers: Unknown arg COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/5/lto-wrapper compilers: Checking arg Target: compilers: Unknown arg Target: compilers: Checking arg x86_64-linux-gnu compilers: Unknown arg x86_64-linux-gnu compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg ../src/configure compilers: Unknown arg ../src/configure compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg --with-pkgversion= compilers: Unknown arg --with-pkgversion= compilers: Checking arg --with-bugurl=file:///usr/share/doc/gcc-5/README.Bugs compilers: Unknown arg --with-bugurl=file:///usr/share/doc/gcc-5/README.Bugs compilers: Checking arg --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ compilers: Unknown arg --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ compilers: Checking arg --prefix=/usr compilers: Unknown arg --prefix=/usr compilers: Checking arg --program-suffix=-5 compilers: Unknown arg --program-suffix=-5 compilers: Checking arg --enable-shared compilers: Unknown arg --enable-shared compilers: Checking arg --enable-linker-build-id compilers: Unknown arg --enable-linker-build-id compilers: Checking arg --libexecdir=/usr/lib compilers: Unknown arg --libexecdir=/usr/lib compilers: Checking arg --without-included-gettext compilers: Unknown arg --without-included-gettext compilers: Checking arg --enable-threads=posix compilers: Unknown arg --enable-threads=posix compilers: Checking arg --libdir=/usr/lib compilers: Unknown arg --libdir=/usr/lib compilers: Checking arg --enable-nls compilers: Unknown arg --enable-nls compilers: Checking arg --with-sysroot=/ compilers: Unknown arg --with-sysroot=/ compilers: Checking arg --enable-clocale=gnu compilers: Unknown arg --enable-clocale=gnu compilers: Checking arg --enable-libstdcxx-debug compilers: Unknown arg --enable-libstdcxx-debug compilers: Checking arg --enable-libstdcxx-time=yes compilers: Unknown arg --enable-libstdcxx-time=yes compilers: Checking arg --with-default-libstdcxx-abi=new compilers: Unknown arg --with-default-libstdcxx-abi=new compilers: Checking arg --enable-gnu-unique-object compilers: Unknown arg --enable-gnu-unique-object compilers: Checking arg --disable-vtable-verify compilers: Unknown arg --disable-vtable-verify compilers: Checking arg --enable-libmpx compilers: Unknown arg --enable-libmpx compilers: Checking arg --enable-plugin compilers: Unknown arg --enable-plugin compilers: Checking arg --with-system-zlib compilers: Unknown arg --with-system-zlib compilers: Checking arg --disable-browser-plugin compilers: Unknown arg --disable-browser-plugin compilers: Checking arg --enable-java-awt=gtk compilers: Unknown arg --enable-java-awt=gtk compilers: Checking arg --enable-gtk-cairo compilers: Unknown arg --enable-gtk-cairo compilers: Checking arg --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-5-amd64/jre compilers: Unknown arg --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-5-amd64/jre compilers: Checking arg --enable-java-home compilers: Unknown arg --enable-java-home compilers: Checking arg --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-5-amd64 compilers: Unknown arg --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-5-amd64 compilers: Checking arg --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-5-amd64 compilers: Unknown arg --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-5-amd64 compilers: Checking arg --with-arch-directory=amd64 compilers: Unknown arg --with-arch-directory=amd64 compilers: Checking arg --with-ecj-jar=/usr/share/java/eclipse-ecj.jar compilers: Unknown arg --with-ecj-jar=/usr/share/java/eclipse-ecj.jar compilers: Checking arg --enable-objc-gc compilers: Unknown arg --enable-objc-gc compilers: Checking arg --enable-multiarch compilers: Unknown arg --enable-multiarch compilers: Checking arg --disable-werror compilers: Unknown arg --disable-werror compilers: Checking arg --with-arch-32=i686 compilers: Unknown arg --with-arch-32=i686 compilers: Checking arg --with-abi=m64 compilers: Unknown arg --with-abi=m64 compilers: Checking arg --with-multilib-list=m32,m64,mx32 compilers: Unknown arg --with-multilib-list=m32,m64,mx32 compilers: Checking arg --enable-multilib compilers: Unknown arg --enable-multilib compilers: Checking arg --with-tune=generic compilers: Unknown arg --with-tune=generic compilers: Checking arg --enable-checking=release compilers: Unknown arg --enable-checking=release compilers: Checking arg --build=x86_64-linux-gnu compilers: Unknown arg --build=x86_64-linux-gnu compilers: Checking arg --host=x86_64-linux-gnu compilers: Unknown arg --host=x86_64-linux-gnu compilers: Checking arg --target=x86_64-linux-gnu compilers: Unknown arg --target=x86_64-linux-gnu compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 5.4.0 compilers: Unknown arg 5.4.0 compilers: Checking arg 20160609 compilers: Unknown arg 20160609 compilers: Checking arg (Ubuntu compilers: Unknown arg (Ubuntu compilers: Checking arg 5.4.0-6ubuntu1~16.04.12) compilers: Unknown arg 5.4.0-6ubuntu1~16.04.12) compilers: Checking arg Reading compilers: Unknown arg Reading compilers: Checking arg specs compilers: Unknown arg specs compilers: Checking arg from compilers: Unknown arg from compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/5/libgfortran.spec compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/5/libgfortran.spec compilers: Checking arg rename compilers: Unknown arg rename compilers: Checking arg spec compilers: Unknown arg spec compilers: Checking arg lib compilers: Unknown arg lib compilers: Checking arg to compilers: Unknown arg to compilers: Checking arg liborig compilers: Unknown arg liborig compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/5/:/usr/lib/gcc/x86_64-linux-gnu/5/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/5/:/usr/lib/gcc/x86_64-linux-gnu/ compilers: Skipping arg COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/5/:/usr/lib/gcc/x86_64-linux-gnu/5/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/5/:/usr/lib/gcc/x86_64-linux-gnu/ compilers: Checking arg LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/5/:/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/5/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/5/../../../:/lib/:/usr/lib/ compilers: Skipping arg LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/5/:/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/5/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/5/../../../:/lib/:/usr/lib/ compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/5/collect2 compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/5/collect2 compilers: Checking arg -plugin compilers: Unknown arg -plugin compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/5/liblto_plugin.so compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/5/liblto_plugin.so compilers: Checking arg -plugin-opt=/usr/lib/gcc/x86_64-linux-gnu/5/lto-wrapper compilers: Unknown arg -plugin-opt=/usr/lib/gcc/x86_64-linux-gnu/5/lto-wrapper compilers: Checking arg -plugin-opt=-fresolution=/tmp/ccETTmac.res compilers: Unknown arg -plugin-opt=-fresolution=/tmp/ccETTmac.res compilers: Checking arg -plugin-opt=-pass-through=-lgcc_s compilers: Unknown arg -plugin-opt=-pass-through=-lgcc_s compilers: Checking arg -plugin-opt=-pass-through=-lgcc compilers: Unknown arg -plugin-opt=-pass-through=-lgcc compilers: Checking arg -plugin-opt=-pass-through=-lquadmath compilers: Unknown arg -plugin-opt=-pass-through=-lquadmath compilers: Checking arg -plugin-opt=-pass-through=-lm compilers: Unknown arg -plugin-opt=-pass-through=-lm compilers: Checking arg -plugin-opt=-pass-through=-lgcc_s compilers: Unknown arg -plugin-opt=-pass-through=-lgcc_s compilers: Checking arg -plugin-opt=-pass-through=-lgcc compilers: Unknown arg -plugin-opt=-pass-through=-lgcc compilers: Checking arg -plugin-opt=-pass-through=-lc compilers: Unknown arg -plugin-opt=-pass-through=-lc compilers: Checking arg -plugin-opt=-pass-through=-lgcc_s compilers: Unknown arg -plugin-opt=-pass-through=-lgcc_s compilers: Checking arg -plugin-opt=-pass-through=-lgcc compilers: Unknown arg -plugin-opt=-pass-through=-lgcc compilers: Checking arg --sysroot=/ compilers: Unknown arg --sysroot=/ compilers: Checking arg --build-id compilers: Unknown arg --build-id compilers: Checking arg --eh-frame-hdr compilers: Unknown arg --eh-frame-hdr compilers: Checking arg -m compilers: Unknown arg -m compilers: Checking arg elf_x86_64 compilers: Unknown arg elf_x86_64 compilers: Checking arg --hash-style=gnu compilers: Unknown arg --hash-style=gnu compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -dynamic-linker compilers: Unknown arg -dynamic-linker compilers: Checking arg /lib64/ld-linux-x86-64.so.2 compilers: Unknown arg /lib64/ld-linux-x86-64.so.2 compilers: Checking arg -z compilers: Unknown arg -z compilers: Checking arg relro compilers: Unknown arg relro compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/petsc-oluu3nld/config.compilers/conftest compilers: Unknown arg /tmp/petsc-oluu3nld/config.compilers/conftest compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/crt1.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/crt1.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/crti.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/crti.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/5/crtbegin.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/5/crtbegin.o compilers: Checking arg -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib compilers: Already in lflags so skipping: -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/5 compilers: Found library directory: -L/usr/lib/gcc/x86_64-linux-gnu/5 compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu compilers: Found library directory: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../../lib compilers: Checking arg -L/lib/x86_64-linux-gnu compilers: Found library directory: -L/lib/x86_64-linux-gnu compilers: Checking arg -L/lib/../lib compilers: Checking arg -L/usr/lib/x86_64-linux-gnu compilers: Already in lflags so skipping: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/../lib compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/5/../../.. compilers: Checking arg /tmp/petsc-oluu3nld/config.compilers/conftest.o compilers: Unknown arg /tmp/petsc-oluu3nld/config.compilers/conftest.o compilers: Checking arg -lstdc++ compilers: Already in lflags: -lstdc++ compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -lmpifort compilers: Already in lflags: -lmpifort compilers: Checking arg -rpath compilers: Found -rpath library: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib compilers: Checking arg --enable-new-dtags compilers: Unknown arg --enable-new-dtags compilers: Checking arg -lmpi compilers: Already in lflags: -lmpi compilers: Checking arg -lgfortran compilers: Found library: -lgfortran compilers: Checking arg -lm compilers: Found library: -lm compilers: Checking arg -lgcc_s compilers: Found library: -lgcc_s compilers: Checking arg -lgcc compilers: Found system library therefore skipping: -lgcc compilers: Checking arg -lquadmath compilers: Found library: -lquadmath compilers: Checking arg -lm compilers: Already in lflags: -lm compilers: Checking arg -lgcc_s compilers: Already in lflags: -lgcc_s compilers: Checking arg -lgcc compilers: Found system library therefore skipping: -lgcc compilers: Checking arg -lc compilers: Found system library therefore skipping: -lc compilers: Checking arg -lgcc_s compilers: Already in lflags: -lgcc_s compilers: Checking arg -lgcc compilers: Found system library therefore skipping: -lgcc compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/5/crtend.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/5/crtend.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/crtn.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/crtn.o compilers: Libraries needed to link Fortran code with the C linker: ['-lstdc++', '-ldl', '-Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib', '-L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib', '-lmpifort', '-lmpi', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/5', '-L/usr/lib/gcc/x86_64-linux-gnu/5', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib', '-lgfortran', '-lm', '-lgcc_s', '-lquadmath'] compilers: Libraries needed to link Fortran main with the C linker: [] compilers: Check that Fortran libraries can be used with C as the linker Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -o /tmp/petsc-oluu3nld/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -lstdc++ -ldl -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lmpifort -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -ldl Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -o /tmp/petsc-oluu3nld/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -lstdc++ -ldl -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lmpifort -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -o /tmp/petsc-oluu3nld/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -lstdc++ -ldl -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lmpifort -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -ldl Testing executable /tmp/petsc-oluu3nld/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-oluu3nld/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-oluu3nld/config.setCompilers/conftest compilers: Check that Fortran libraries can be used with C++ as linker compilers: Fortran libraries can be used from C++ Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx -o /tmp/petsc-oluu3nld/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -lstdc++ -ldl -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lmpifort -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -ldl Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx -o /tmp/petsc-oluu3nld/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -lstdc++ -ldl -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lmpifort -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx -c -o /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx -o /tmp/petsc-oluu3nld/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.setCompilers/conftest.o -lstdc++ -ldl -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lmpifort -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -ldl Testing executable /tmp/petsc-oluu3nld/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-oluu3nld/config.setCompilers/conftest Running Executable with threads to time it out at 60 Executing: /tmp/petsc-oluu3nld/config.setCompilers/conftest ================================================================================ TEST checkFortranLinkingCxx from config.compilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/compilers.py:1328) TESTING: checkFortranLinkingCxx from config.compilers(config/BuildSystem/config/compilers.py:1328) Check that Fortran can link C++ libraries Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx -c -o /tmp/petsc-oluu3nld/config.compilers/conftest.o -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void foo(void){d1chk_();} Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx -c -o /tmp/petsc-oluu3nld/config.compilers/conftest.o -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void d1chk_(void){return;} Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -c -o /tmp/petsc-oluu3nld/config.compilers/conftest.o -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.F90 Successful compile: Source: program main call d1chk() end Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -o /tmp/petsc-oluu3nld/config.compilers/conftest -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-oluu3nld/config.compilers/conftest.o /tmp/petsc-oluu3nld/config.compilers/cxxobj.o /tmp/petsc-oluu3nld/config.compilers/confc.o -lstdc++ -ldl compilers: Fortran can link C++ functions ================================================================================ TEST setupFrameworkCompilers from config.compilers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/compilers.py:1473) TESTING: setupFrameworkCompilers from config.compilers(config/BuildSystem/config/compilers.py:1473) Not checking for library in Download MPICH: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for optional headers [] in Download MPICH: ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] ================================================================================ TEST checkInclude from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] Found header files [] in ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] Checking for headers [] in Download MPICH: ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] ================================================================================ TEST checkVersion from config.packages.MPICH(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:992) TESTING: checkVersion from config.packages.MPICH(config/BuildSystem/config/package.py:992) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ================================================================================ TEST checkSharedLibrary from config.packages.MPICH(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:926) TESTING: checkSharedLibrary from config.packages.MPICH(config/BuildSystem/config/package.py:926) By default we don't care about checking if the library is shared child config.packages.MPICH 255.506582 ================================================================================ TEST checkDependencies from config.packages.MPI(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:843) TESTING: checkDependencies from config.packages.MPI(config/BuildSystem/config/package.py:843) ================================================================================ TEST configureLibrary from config.packages.MPI(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/packages/MPI.py:617) TESTING: configureLibrary from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:617) ================================================================================== Checking for a functional MPI Checking for library in Package specific search directory MPI: [] Contents: ['share', 'lib', 'externalpackages', 'include', 'bin'] ================================================================================ TEST check from config.libraries(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library [] [] Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.libraries/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -o /tmp/petsc-oluu3nld/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.o -lstdc++ -ldl Checking for optional headers [] in Package specific search directory MPI: ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] ================================================================================ TEST checkInclude from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] Found header files [] in ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] Checking for headers ['mpi.h'] in Package specific search directory MPI: ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] ================================================================================ TEST checkInclude from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['mpi.h'] in ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] Checking include with compiler flags var CPPFLAGS ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -E -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include /tmp/petsc-oluu3nld/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Found header files ['mpi.h'] in ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] ================================================================================ TEST checkMPIDistro from config.packages.MPI(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/packages/MPI.py:478) TESTING: checkMPIDistro from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:478) Determine if MPICH_NUMVERSION, OMPI_MAJOR_VERSION or MSMPI_VER exist in mpi.h Used for consistency checking of MPI installation at compile time All intermediate test results are stored in /tmp/petsc-oluu3nld/config.packages.MPI Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.packages.MPI/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include /tmp/petsc-oluu3nld/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-oluu3nld/config.packages.MPI/conftest.c:4:25: error: ‘I_MPI_VERSION’ undeclared here (not in a function) const char *mpich_ver = I_MPI_VERSION; ^ Source: #include "confdefs.h" #include "conffix.h" #include const char *mpich_ver = I_MPI_VERSION; int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.packages.MPI/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include /tmp/petsc-oluu3nld/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-oluu3nld/config.packages.MPI/conftest.c:4:17: error: ‘I_MPI_NUMVERSION’ undeclared here (not in a function) int mpich_ver = I_MPI_NUMVERSION; ^ Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = I_MPI_NUMVERSION; int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.packages.MPI/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include /tmp/petsc-oluu3nld/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-oluu3nld/config.packages.MPI/conftest.c:4:17: error: ‘MVAPICH2_NUMVERSION’ undeclared here (not in a function) int mpich_ver = MVAPICH2_NUMVERSION; ^ Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MVAPICH2_NUMVERSION; int main() { ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.packages.MPI/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include /tmp/petsc-oluu3nld/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MPICH_NUMVERSION; int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MPICH_NUMVERSION; Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -E -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.packages.MPI -I/tmp/petsc-oluu3nld/config.headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include /tmp/petsc-oluu3nld/config.packages.MPI/conftest.c Defined "HAVE_MPICH_NUMVERSION" to "30302300" Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux ================================================================================ TEST configureMPI2 from config.packages.MPI(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/packages/MPI.py:253) TESTING: configureMPI2 from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:253) Check for functions added to the interface in MPI-2 Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.packages.MPI/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include /tmp/petsc-oluu3nld/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int flag;if (MPI_Finalized(&flag)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -o /tmp/petsc-oluu3nld/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_FINALIZED" to "1" Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.packages.MPI/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include /tmp/petsc-oluu3nld/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Allreduce(MPI_IN_PLACE,0, 1, MPI_INT, MPI_SUM, MPI_COMM_SELF)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -o /tmp/petsc-oluu3nld/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_IN_PLACE" to "1" Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.packages.MPI/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include /tmp/petsc-oluu3nld/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int count=2; int blocklens[2]={0,1}; MPI_Aint indices[2]={0,1}; MPI_Datatype old_types[2]={0,1}; MPI_Datatype *newtype = 0; if (MPI_Type_create_struct(count, blocklens, indices, old_types, newtype)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -o /tmp/petsc-oluu3nld/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.packages.MPI/conftest.o -lstdc++ -ldl Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.packages.MPI/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include /tmp/petsc-oluu3nld/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm_errhandler_fn * p_err_fun = 0; MPI_Errhandler * p_errhandler = 0; if (MPI_Comm_create_errhandler(p_err_fun,p_errhandler)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -o /tmp/petsc-oluu3nld/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.packages.MPI/conftest.o -lstdc++ -ldl Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.packages.MPI/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include /tmp/petsc-oluu3nld/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_set_errhandler(MPI_COMM_WORLD,MPI_ERRORS_RETURN)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -o /tmp/petsc-oluu3nld/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.packages.MPI/conftest.o -lstdc++ -ldl Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.packages.MPI/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include /tmp/petsc-oluu3nld/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Reduce_local(0, 0, 0, MPI_INT, MPI_SUM));; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -o /tmp/petsc-oluu3nld/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_REDUCE_LOCAL" to "1" Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.packages.MPI/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include /tmp/petsc-oluu3nld/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { char version[MPI_MAX_LIBRARY_VERSION_STRING];int verlen;if (MPI_Get_library_version(version,&verlen)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -o /tmp/petsc-oluu3nld/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_GET_LIBRARY_VERSION" to "1" Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.packages.MPI/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include /tmp/petsc-oluu3nld/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int base[100]; MPI_Win win; if (MPI_Win_create(base,100,4,MPI_INFO_NULL,MPI_COMM_WORLD,&win)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -o /tmp/petsc-oluu3nld/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_WIN_CREATE" to "1" Defined "HAVE_MPI_ONE_SIDED" to "1" ================================================================================ TEST configureMPI3 from config.packages.MPI(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/packages/MPI.py:298) TESTING: configureMPI3 from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:298) Check for functions added to the interface in MPI-3 Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.packages.MPI/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include /tmp/petsc-oluu3nld/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm scomm; MPI_Aint size=128; int disp_unit=8,*baseptr; MPI_Win win; if (MPI_Comm_split_type(MPI_COMM_WORLD, MPI_COMM_TYPE_SHARED, 0, MPI_INFO_NULL, &scomm)); if (MPI_Win_allocate_shared(size,disp_unit,MPI_INFO_NULL,MPI_COMM_WORLD,&baseptr,&win)); if (MPI_Win_shared_query(win,0,&size,&disp_unit,&baseptr)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -o /tmp/petsc-oluu3nld/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_PROCESS_SHARED_MEMORY" to "1" Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.packages.MPI/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include /tmp/petsc-oluu3nld/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int send=0,recv,counts[2]={1,1},displs[2]={1,2}; MPI_Request req; if (MPI_Iscatter(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Iscatterv(&send,counts,displs,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Igather(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Igatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Iallgather(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); if (MPI_Iallgatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,MPI_COMM_WORLD,&req)); if (MPI_Ialltoall(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -o /tmp/petsc-oluu3nld/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_NONBLOCKING_COLLECTIVES" to "1" Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.packages.MPI/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include /tmp/petsc-oluu3nld/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm distcomm; MPI_Request req; if (MPI_Dist_graph_create_adjacent(MPI_COMM_WORLD,0,0,MPI_WEIGHTS_EMPTY,0,0,MPI_WEIGHTS_EMPTY,MPI_INFO_NULL,0,&distcomm)); if (MPI_Neighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm)); if (MPI_Ineighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm,&req)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -o /tmp/petsc-oluu3nld/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_NEIGHBORHOOD_COLLECTIVES" to "1" Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.packages.MPI/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include /tmp/petsc-oluu3nld/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-oluu3nld/config.packages.MPI/conftest.c: In function ‘main’: /tmp/petsc-oluu3nld/config.packages.MPI/conftest.c:6:30: warning: ‘win’ is used uninitialized in this function [-Wuninitialized] int ptr[1]; MPI_Win win; if (MPI_Get_accumulate(ptr,1,MPI_INT,ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_SUM,win)); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ptr[1]; MPI_Win win; if (MPI_Get_accumulate(ptr,1,MPI_INT,ptr,1,MPI_INT,0,0,1,MPI_INT,MPI_SUM,win)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -o /tmp/petsc-oluu3nld/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_GET_ACCUMULATE" to "1" Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.packages.MPI/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include /tmp/petsc-oluu3nld/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-oluu3nld/config.packages.MPI/conftest.c: In function ‘main’: /tmp/petsc-oluu3nld/config.packages.MPI/conftest.c:6:47: warning: ‘win’ is used uninitialized in this function [-Wuninitialized] int ptr[1]; MPI_Win win; MPI_Request req; if (MPI_Rget(ptr,1,MPI_INT,0,1,1,MPI_INT,win,&req)); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ptr[1]; MPI_Win win; MPI_Request req; if (MPI_Rget(ptr,1,MPI_INT,0,1,1,MPI_INT,win,&req)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -o /tmp/petsc-oluu3nld/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_RGET" to "1" ================================================================================ TEST configureMPIEXEC from config.packages.MPI(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/packages/MPI.py:175) TESTING: configureMPIEXEC from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:175) Checking for location of mpiexec Checking for program /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpiexec...found Running Executable with threads to time it out at 60 Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpiexec -n 1 printenv stdout: LESSOPEN=| /usr/bin/lesspipe %s PULSE_CLIENTCONFIG=/home/dsu/.x2go/C-dsu-50-1591115755_stDMATE_dp32/.pulse-client.conf MAIL=/var/mail/dsu SSH_CLIENT=216.232.220.213 50127 22 USER=dsu LANGUAGE=en_CA:en LD_LIBRARY_PATH=:/home/dsu/Soft/Intel/parallel_studio_2019/lib/intel64:/home/dsu/Soft/Intel/parallel_studio_2019/lib/intel64:/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib SHLVL=4 OLDPWD=/home/dsu/Soft/PETSc HOME=/home/dsu QT_LINUX_ACCESSIBILITY_ALWAYS_ON=1 GTK_MODULES=gail:atk-bridge:gail:atk-bridge LIS_DIR=/home/dsu/Soft/lis/lis-2.0.11 DBUS_SESSION_BUS_ADDRESS=unix:abstract=/tmp/dbus-20rbE1TPsi,guid=98f816bfd25e41050e2226e85ed67fef COLORTERM=mate-terminal QT_QPA_PLATFORMTHEME=appmenu-qt5 XSESSION_EXEC=mate-session LOGNAME=dsu PETSC_ARCH=linux-gnu-opt WINDOWID=37767173 _=./configure X2GO_AGENT_PID=60144 XDG_SESSION_ID=11979 TERM=xterm GTK_OVERLAY_SCROLLING=0 COLUMNS=107 STARTUP=/usr/bin/im-launch /usr/bin/env LD_LIBRARY_PATH= mate-session GTK2_MODULES=overlay-scrollbar PATH=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin:/home/dsu/Soft/PETSc/petsc-3.10.5/linux-gnu-opt/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/home/dsu/Soft/Paraview/ParaView-5.5.0/bin:/home/dsu/Soft/VisIt/visit2_13_0.linux-x86_64/bin:/home/dsu/Soft/Intel/parallel_studio_2019/bin:/home/dsu/Soft/Paraview/ParaView-5.5.0/bin:/home/dsu/Soft/VisIt/visit2_13_0.linux-x86_64/bin:/home/dsu/Soft/Intel/parallel_studio_2019/bin SESSION_MANAGER=local/andromeda:@/tmp/.ICE-unix/60355,unix/andromeda:/tmp/.ICE-unix/60355 QT_GRAPHICSSYSTEM=native XDG_RUNTIME_DIR=/run/user/1001 DISPLAY=:50 LANG=en_US.UTF-8 XDG_CURRENT_DESKTOP=MATE LS_COLORS=rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=00:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=00;36:*.au=00;36:*.flac=00;36:*.m4a=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.oga=00;36:*.opus=00;36:*.spx=00;36:*.xspf=00;36: XAUTHORITY=/home/dsu/.Xauthority SSH_AUTH_SOCK=/run/user/1001/keyring/ssh SHELL=/bin/bash QT_ACCESSIBILITY=1 LESSCLOSE=/usr/bin/lesspipe %s %s PETSC_DIR=/home/dsu/Soft/PETSc/petsc-3.13.2 PWD=/home/dsu/Soft/PETSc/petsc-3.13.2 XDG_DATA_DIRS=/usr/local/share:/usr/share:/var/lib/snapd/desktop:/var/lib/snapd/desktop SSH_CONNECTION=216.232.220.213 50127 137.82.22.143 22 LIS_ARCH=lis-openmp LINES=27 MATE_DESKTOP_SESSION_ID=this-is-deprecated VTE_VERSION=4205 X2GO_SESSION=dsu-50-1591115755_stDMATE_dp32 HYDI_CONTROL_FD=7 GFORTRAN_UNBUFFERED_PRECONNECTED=y MPIR_CVAR_CH3_INTERFACE_HOSTNAME=andromeda MPI_LOCALNRANKS=1 MPI_LOCALRANKID=0 PMI_RANK=0 PMI_FD=6 PMI_SIZE=1 Defined "HAVE_MPIEXEC_ENVIRONMENTAL_VARIABLE" to "MPIR_CVAR_CH3" Defined make macro "MPIEXEC" to "/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpiexec" Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.packages.MPI/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Init(0,0); MPI_Finalize(); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -o /tmp/petsc-oluu3nld/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.packages.MPI/conftest.o -lstdc++ -ldl Testing executable /tmp/petsc-oluu3nld/config.packages.MPI/conftest to see if it can be run Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpiexec -n 1 /tmp/petsc-oluu3nld/config.packages.MPI/conftest Running Executable with threads to time it out at 60 Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpiexec -n 1 /tmp/petsc-oluu3nld/config.packages.MPI/conftest ================================================================================ TEST configureMPITypes from config.packages.MPI(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/packages/MPI.py:345) TESTING: configureMPITypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:345) Checking for MPI Datatype handles Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.packages.MPI/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include /tmp/petsc-oluu3nld/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_LONG_DOUBLE, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.packages.MPI/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include /tmp/petsc-oluu3nld/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_LONG_DOUBLE, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -o /tmp/petsc-oluu3nld/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.packages.MPI/conftest.o -lstdc++ -ldl Testing executable /tmp/petsc-oluu3nld/config.packages.MPI/conftest to see if it can be run Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpiexec -n 1 /tmp/petsc-oluu3nld/config.packages.MPI/conftest Running Executable with threads to time it out at 60 Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpiexec -n 1 /tmp/petsc-oluu3nld/config.packages.MPI/conftest Defined "HAVE_MPI_LONG_DOUBLE" to "1" Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.packages.MPI/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include /tmp/petsc-oluu3nld/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_INT64_T, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.packages.MPI/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include /tmp/petsc-oluu3nld/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_INT64_T, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -o /tmp/petsc-oluu3nld/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.packages.MPI/conftest.o -lstdc++ -ldl Testing executable /tmp/petsc-oluu3nld/config.packages.MPI/conftest to see if it can be run Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpiexec -n 1 /tmp/petsc-oluu3nld/config.packages.MPI/conftest Running Executable with threads to time it out at 60 Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpiexec -n 1 /tmp/petsc-oluu3nld/config.packages.MPI/conftest Defined "HAVE_MPI_INT64_T" to "1" Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.packages.MPI/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include /tmp/petsc-oluu3nld/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_C_DOUBLE_COMPLEX, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.packages.MPI/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include /tmp/petsc-oluu3nld/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_C_DOUBLE_COMPLEX, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -o /tmp/petsc-oluu3nld/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.packages.MPI/conftest.o -lstdc++ -ldl Testing executable /tmp/petsc-oluu3nld/config.packages.MPI/conftest to see if it can be run Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpiexec -n 1 /tmp/petsc-oluu3nld/config.packages.MPI/conftest Running Executable with threads to time it out at 60 Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpiexec -n 1 /tmp/petsc-oluu3nld/config.packages.MPI/conftest Defined "HAVE_MPI_C_DOUBLE_COMPLEX" to "1" ================================================================================ TEST SGIMPICheck from config.packages.MPI(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/packages/MPI.py:406) TESTING: SGIMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:406) Returns true if SGI MPI is used Checking for functions [MPI_SGI_barrier] in library [] [] Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.libraries/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_SGI_barrier(); static void _check_MPI_SGI_barrier() { MPI_SGI_barrier(); } int main() { _check_MPI_SGI_barrier();; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -o /tmp/petsc-oluu3nld/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-oluu3nld/config.libraries/conftest.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `MPI_SGI_barrier' collect2: error: ld returned 1 exit status SGI MPI test failure ================================================================================ TEST CxxMPICheck from config.packages.MPI(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/packages/MPI.py:416) TESTING: CxxMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:416) Make sure C++ can compile and link Checking for header mpi.h Checking for C++ MPI_Finalize() Checking for functions [MPI_Finalize] in library [] [] Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx -c -o /tmp/petsc-oluu3nld/config.libraries/conftest.o -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include /tmp/petsc-oluu3nld/config.libraries/conftest.cc Possible ERROR while running compiler: stderr: /tmp/petsc-oluu3nld/config.libraries/conftest.cc: In function ‘void _check_MPI_Finalize()’: /tmp/petsc-oluu3nld/config.libraries/conftest.cc:5:41: warning: variable ‘ierr’ set but not used [-Wunused-but-set-variable] static void _check_MPI_Finalize() { int ierr; ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_MPI_Finalize() { int ierr; ierr = MPI_Finalize();; } int main() { _check_MPI_Finalize();; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx -o /tmp/petsc-oluu3nld/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.o -lstdc++ -ldl ================================================================================ TEST FortranMPICheck from config.packages.MPI(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/packages/MPI.py:432) TESTING: FortranMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:432) Make sure fortran include [mpif.h] and library symbols are found Checking for fortran mpi_init() Checking for functions [] in library [] [] Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -c -o /tmp/petsc-oluu3nld/config.libraries/conftest.o -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include /tmp/petsc-oluu3nld/config.libraries/conftest.F90 Successful compile: Source: program main #include "mpif.h" integer ierr call mpi_init(ierr) end Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -o /tmp/petsc-oluu3nld/config.libraries/conftest -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.o -lstdc++ -ldl Checking for mpi.mod Checking for functions [] in library [] [] Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -c -o /tmp/petsc-oluu3nld/config.libraries/conftest.o -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include /tmp/petsc-oluu3nld/config.libraries/conftest.F90 Successful compile: Source: program main use mpi integer ierr,rank call mpi_init(ierr) call mpi_comm_rank(MPI_COMM_WORLD,rank,ierr) end Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -o /tmp/petsc-oluu3nld/config.libraries/conftest -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_F90MODULE" to "1" ================================================================================ TEST configureIO from config.packages.MPI(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/packages/MPI.py:454) TESTING: configureIO from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:454) Check for the functions in MPI/IO - Define HAVE_MPIIO if they are present - Some older MPI 1 implementations are missing these Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.packages.MPI/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include /tmp/petsc-oluu3nld/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-oluu3nld/config.packages.MPI/conftest.c: In function ‘main’: /tmp/petsc-oluu3nld/config.packages.MPI/conftest.c:12:5: warning: ‘buf’ is used uninitialized in this function [-Wuninitialized] if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); ^ /tmp/petsc-oluu3nld/config.packages.MPI/conftest.c:18:5: warning: ‘disp’ is used uninitialized in this function [-Wuninitialized] if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); ^ /tmp/petsc-oluu3nld/config.packages.MPI/conftest.c:18:5: warning: ‘info’ is used uninitialized in this function [-Wuninitialized] Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Aint lb, extent; if (MPI_Type_get_extent(MPI_INT, &lb, &extent)); MPI_File fh; void *buf; MPI_Status status; if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)); MPI_Offset disp; MPI_Info info; if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); if (MPI_File_open(MPI_COMM_SELF, "", 0, info, &fh)); if (MPI_File_close(&fh)); ; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -o /tmp/petsc-oluu3nld/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPIIO" to "1" ================================================================================ TEST findMPIInc from config.packages.MPI(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/packages/MPI.py:558) TESTING: findMPIInc from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:558) Find MPI include paths from "mpicc -show" and use with CUDAC_FLAGS ================================================================================ TEST PetscArchMPICheck from config.packages.MPI(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/packages/MPI.py:592) TESTING: PetscArchMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:592) mpi.h found in build dir! Checking if its a bad copy. Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -E -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.packages.MPI -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include /tmp/petsc-oluu3nld/config.packages.MPI/conftest.c mpi_h_line: # 1 "/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include/mpi.h" 1 Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -E -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.packages.MPI -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include /tmp/petsc-oluu3nld/config.packages.MPI/conftest.c mpi_h_line: # 1 "/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include/mpi.h" 1 Checking for functions [MPI_Type_get_envelope MPI_Type_dup MPI_Init_thread MPI_Iallreduce MPI_Ibarrier MPI_Finalized MPI_Exscan MPI_Reduce_scatter MPI_Reduce_scatter_block] in library [] [] Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.libraries/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Type_get_envelope(); static void _check_MPI_Type_get_envelope() { MPI_Type_get_envelope(); } char MPI_Type_dup(); static void _check_MPI_Type_dup() { MPI_Type_dup(); } char MPI_Init_thread(); static void _check_MPI_Init_thread() { MPI_Init_thread(); } char MPI_Iallreduce(); static void _check_MPI_Iallreduce() { MPI_Iallreduce(); } char MPI_Ibarrier(); static void _check_MPI_Ibarrier() { MPI_Ibarrier(); } char MPI_Finalized(); static void _check_MPI_Finalized() { MPI_Finalized(); } char MPI_Exscan(); static void _check_MPI_Exscan() { MPI_Exscan(); } char MPI_Reduce_scatter(); static void _check_MPI_Reduce_scatter() { MPI_Reduce_scatter(); } char MPI_Reduce_scatter_block(); static void _check_MPI_Reduce_scatter_block() { MPI_Reduce_scatter_block(); } int main() { _check_MPI_Type_get_envelope(); _check_MPI_Type_dup(); _check_MPI_Init_thread(); _check_MPI_Iallreduce(); _check_MPI_Ibarrier(); _check_MPI_Finalized(); _check_MPI_Exscan(); _check_MPI_Reduce_scatter(); _check_MPI_Reduce_scatter_block();; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -o /tmp/petsc-oluu3nld/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_TYPE_GET_ENVELOPE" to "1" Defined "HAVE_MPI_TYPE_DUP" to "1" Defined "HAVE_MPI_INIT_THREAD" to "1" Defined "HAVE_MPI_IALLREDUCE" to "1" Defined "HAVE_MPI_IBARRIER" to "1" Defined "HAVE_MPI_FINALIZED" to "1" Defined "HAVE_MPI_EXSCAN" to "1" Defined "HAVE_MPI_REDUCE_SCATTER" to "1" Defined "HAVE_MPI_REDUCE_SCATTER_BLOCK" to "1" Checking for functions [MPIX_Iallreduce] in library [] [] Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.libraries/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIX_Iallreduce(); static void _check_MPIX_Iallreduce() { MPIX_Iallreduce(); } int main() { _check_MPIX_Iallreduce();; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -o /tmp/petsc-oluu3nld/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-oluu3nld/config.libraries/conftest.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `MPIX_Iallreduce' collect2: error: ld returned 1 exit status Checking for functions [MPIX_Ibarrier] in library [] [] Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.libraries/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIX_Ibarrier(); static void _check_MPIX_Ibarrier() { MPIX_Ibarrier(); } int main() { _check_MPIX_Ibarrier();; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -o /tmp/petsc-oluu3nld/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-oluu3nld/config.libraries/conftest.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `MPIX_Ibarrier' collect2: error: ld returned 1 exit status Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.packages.MPI/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include /tmp/petsc-oluu3nld/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-oluu3nld/config.packages.MPI/conftest.c: In function ‘main’: /tmp/petsc-oluu3nld/config.packages.MPI/conftest.c:6:5: warning: unused variable ‘combiner’ [-Wunused-variable] int combiner = MPI_COMBINER_DUP;; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_DUP;; return 0; } Defined "HAVE_MPI_COMBINER_DUP" to "1" Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.packages.MPI/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include /tmp/petsc-oluu3nld/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-oluu3nld/config.packages.MPI/conftest.c: In function ‘main’: /tmp/petsc-oluu3nld/config.packages.MPI/conftest.c:6:5: warning: unused variable ‘combiner’ [-Wunused-variable] int combiner = MPI_COMBINER_CONTIGUOUS;; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_CONTIGUOUS;; return 0; } Defined "HAVE_MPI_COMBINER_CONTIGUOUS" to "1" Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.packages.MPI/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include /tmp/petsc-oluu3nld/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-oluu3nld/config.packages.MPI/conftest.c: In function ‘main’: /tmp/petsc-oluu3nld/config.packages.MPI/conftest.c:6:5: warning: unused variable ‘combiner’ [-Wunused-variable] int combiner = MPI_COMBINER_NAMED;; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_NAMED;; return 0; } Defined "HAVE_MPI_COMBINER_NAMED" to "1" ================================================================================ TEST checkVersion from config.packages.MPI(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:992) TESTING: checkVersion from config.packages.MPI(config/BuildSystem/config/package.py:992) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "mpi.h" ;petscpkgver(MPI_VERSION); Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -E -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.packages.MPI -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include /tmp/petsc-oluu3nld/config.packages.MPI/conftest.c For mpi need 2 <= 3 <= ================================================================================ TEST checkSharedLibrary from config.packages.MPI(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:926) TESTING: checkSharedLibrary from config.packages.MPI(config/BuildSystem/config/package.py:926) By default we don't care about checking if the library is shared child config.packages.MPI 6.145101 ================================================================================ TEST alternateConfigureLibrary from config.packages.zstd(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.zstd(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.zstd 0.001092 ================================================================================ TEST alternateConfigureLibrary from config.packages.yaml(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.yaml(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.yaml 0.000645 ================================================================================ TEST configureLibrary from config.packages.valgrind(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:868) TESTING: configureLibrary from config.packages.valgrind(config/BuildSystem/config/package.py:868) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional valgrind Not checking for library in Compiler specific search VALGRIND: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for optional headers [] in Compiler specific search VALGRIND: ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] ================================================================================ TEST checkInclude from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] Found header files [] in ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] Checking for headers ['valgrind/valgrind.h'] in Compiler specific search VALGRIND: ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] ================================================================================ TEST checkInclude from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] Checking include with compiler flags var CPPFLAGS ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -E -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.packages.MPI -I/tmp/petsc-oluu3nld/config.headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include /tmp/petsc-oluu3nld/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Found header files ['valgrind/valgrind.h'] in ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] All intermediate test results are stored in /tmp/petsc-oluu3nld/config.packages.valgrind Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.packages.valgrind/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.libraries -I/tmp/petsc-oluu3nld/config.packages.valgrind -I/tmp/petsc-oluu3nld/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.packages.valgrind/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { RUNNING_ON_VALGRIND; ; return 0; } Defined "HAVE_VALGRIND" to "1" child config.packages.valgrind 0.140651 ================================================================================ TEST alternateConfigureLibrary from config.packages.ssl(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.ssl(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.ssl 0.001945 ================================================================================ TEST alternateConfigureLibrary from config.packages.sprng(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.sprng(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.sprng 0.001230 Not a clone of PETSc or no Fortran compiler or fortran-bindings disabled, don't need Sowing child config.packages.sowing 0.000491 ================================================================================ TEST alternateConfigureLibrary from config.packages.revolve(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.revolve(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.revolve 0.001218 ================================================================================ TEST alternateConfigureLibrary from config.packages.radau5(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.radau5(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.radau5 0.001187 ================================================================================ TEST alternateConfigureLibrary from config.packages.pami(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.pami(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.pami 0.001041 ================================================================================ TEST alternateConfigureLibrary from config.packages.opengles(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.opengles(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.opengles 0.001040 ================================================================================ TEST alternateConfigureLibrary from config.packages.opencl(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.opencl(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.opencl 0.001025 ================================================================================ TEST alternateConfigureLibrary from config.packages.muparser(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.muparser(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.muparser 0.001177 Defined "PYTHON_EXE" to ""/usr/bin/python3"" Running Executable WITHOUT threads to time it out Executing: /usr/bin/python3 -c "import Cython" Running Executable WITHOUT threads to time it out Executing: /usr/bin/python3 -c "import numpy" child config.packages.python 0.209586 ================================================================================ TEST alternateConfigureLibrary from config.packages.petsc4py(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/packages/petsc4py.py:97) TESTING: alternateConfigureLibrary from config.packages.petsc4py(config/BuildSystem/config/packages/petsc4py.py:97) Defined make rule "petsc4py-build" with dependencies "" and code [] Defined make rule "petsc4py-install" with dependencies "" and code [] child config.packages.petsc4py 0.003695 ================================================================================ TEST alternateConfigureLibrary from config.packages.mpi4py(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/packages/mpi4py.py:74) TESTING: alternateConfigureLibrary from config.packages.mpi4py(config/BuildSystem/config/packages/mpi4py.py:74) Defined make rule "mpi4py-build" with dependencies "" and code [] Defined make rule "mpi4py-install" with dependencies "" and code [] child config.packages.mpi4py 0.002300 ================================================================================ TEST alternateConfigureLibrary from config.packages.mpe(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.mpe(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.mpe 0.001651 ================================================================================ TEST alternateConfigureLibrary from config.packages.memkind(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.memkind(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.memkind 0.001421 ================================================================================ TEST alternateConfigureLibrary from config.packages.libmesh(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/packages/libmesh.py:76) TESTING: alternateConfigureLibrary from config.packages.libmesh(config/BuildSystem/config/packages/libmesh.py:76) Defined make rule "libmesh-build" with dependencies "" and code [] Defined make rule "libmesh-install" with dependencies "" and code [] child config.packages.libmesh 0.002220 ================================================================================ TEST alternateConfigureLibrary from config.packages.moose(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.moose(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.moose 0.001539 ================================================================================ TEST alternateConfigureLibrary from config.packages.libjpeg(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.libjpeg(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.libjpeg 0.001660 ================================================================================ TEST alternateConfigureLibrary from config.packages.libceed(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.libceed(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.libceed 0.000752 Not a clone of PETSc, don't need Lgrind child config.packages.lgrind 0.000179 ================================================================================ TEST alternateConfigureLibrary from config.packages.slepc(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/packages/slepc.py:88) TESTING: alternateConfigureLibrary from config.packages.slepc(config/BuildSystem/config/packages/slepc.py:88) Defined make rule "slepc-build" with dependencies "" and code [] Defined make rule "slepc-install" with dependencies "" and code [] child config.packages.slepc 0.000903 ================================================================================ TEST alternateConfigureLibrary from config.packages.gmp(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.gmp(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.gmp 0.000670 ================================================================================ TEST alternateConfigureLibrary from config.packages.mpfr(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.mpfr(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.mpfr 0.000627 ================================================================================ TEST alternateConfigureLibrary from config.packages.giflib(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.giflib(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.giflib 0.000640 ================================================================================ TEST alternateConfigureLibrary from config.packages.egads(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.egads(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.egads 0.000643 ================================================================================ TEST checkDependencies from config.packages.ctetgen(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:843) TESTING: checkDependencies from config.packages.ctetgen(config/BuildSystem/config/package.py:843) ================================================================================ TEST configureLibrary from config.packages.ctetgen(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/packages/ctetgen.py:23) TESTING: configureLibrary from config.packages.ctetgen(config/BuildSystem/config/packages/ctetgen.py:23) Since ctergen cannot be built until after PETSc configure is complete we need to just assume the downloaded library will work Looking for CTETGEN at git.ctetgen, hg.ctetgen or a directory starting with ['ctetgen'] Could not locate an existing copy of CTETGEN: ['mpich-3.3.2'] Downloading ctetgen =============================================================================== Trying to download git://https://bitbucket.org/petsc/ctetgen.git for CTETGEN =============================================================================== Running Executable WITHOUT threads to time it out Executing: git clone https://bitbucket.org/petsc/ctetgen.git /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.ctetgen Looking for CTETGEN at git.ctetgen, hg.ctetgen or a directory starting with ['ctetgen'] Found a copy of CTETGEN in git.ctetgen Running Executable WITHOUT threads to time it out Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Running Executable WITHOUT threads to time it out Executing: ['git', 'cat-file', '-e', 'ctetgen-0.5^{commit}'] Running Executable WITHOUT threads to time it out Executing: ['git', 'rev-parse', 'ctetgen-0.5'] stdout: 082144edbc9e2c51e0a246b825c2a005a9fc9907 Running Executable WITHOUT threads to time it out Executing: ['git', '-c', 'user.name=petsc-configure', '-c', 'user.email=petsc@configure', 'stash'] stdout: No local changes to save Running Executable WITHOUT threads to time it out Executing: ['git', 'clean', '-f', '-d', '-x'] Running Executable WITHOUT threads to time it out Executing: ['git', 'checkout', '-f', '082144edbc9e2c51e0a246b825c2a005a9fc9907'] ================================================================================ TEST checkVersion from config.packages.ctetgen(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:992) TESTING: checkVersion from config.packages.ctetgen(config/BuildSystem/config/package.py:992) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ================================================================================ TEST checkSharedLibrary from config.packages.ctetgen(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:926) TESTING: checkSharedLibrary from config.packages.ctetgen(config/BuildSystem/config/package.py:926) By default we don't care about checking if the library is shared child config.packages.ctetgen 2.065301 ================================================================================ TEST alternateConfigureLibrary from config.packages.concurrencykit(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.concurrencykit(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.concurrencykit 0.001744 ================================================================================ TEST locateC2html from config.packages.c2html(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/packages/c2html.py:33) TESTING: locateC2html from config.packages.c2html(config/BuildSystem/config/packages/c2html.py:33) Looking for default C2html executable Checking for program /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/c2html...not found Checking for program /home/dsu/Soft/PETSc/petsc-3.10.5/linux-gnu-opt/bin/c2html...not found Checking for program /usr/local/sbin/c2html...not found Checking for program /usr/local/bin/c2html...not found Checking for program /usr/sbin/c2html...not found Checking for program /usr/bin/c2html...not found Checking for program /sbin/c2html...not found Checking for program /bin/c2html...not found Checking for program /usr/games/c2html...not found Checking for program /usr/local/games/c2html...not found Checking for program /snap/bin/c2html...not found Checking for program /home/dsu/Soft/Paraview/ParaView-5.5.0/bin/c2html...not found Checking for program /home/dsu/Soft/VisIt/visit2_13_0.linux-x86_64/bin/c2html...not found Checking for program /home/dsu/Soft/Intel/parallel_studio_2019/bin/c2html...not found Checking for program /home/dsu/Soft/Paraview/ParaView-5.5.0/bin/c2html...not found Checking for program /home/dsu/Soft/VisIt/visit2_13_0.linux-x86_64/bin/c2html...not found Checking for program /home/dsu/Soft/Intel/parallel_studio_2019/bin/c2html...not found Checking for program /home/dsu/Soft/PETSc/petsc-3.13.2/lib/petsc/bin/win32fe/c2html...not found Unable to find programs ['c2html'] providing listing of each search directory to help debug Path provided in Python program Path provided by default path ['mpichversion', 'mpic++', 'mpiexec', 'mpirun', 'hydra_nameserver', 'mpicxx', 'mpif90', 'mpivars', 'mpifort', 'mpif77', 'parkill', 'mpiexec.hydra', 'hydra_persist', 'hydra_pmi_proxy', 'mpicc'] ['mpichversion', 'h5unjam', 'h5perf', 'h5dump', 'mpic++', 'h5copy', 'mpiexec', 'h5import', 'mpirun', 'h5debug', 'gif2h5', 'h5repart', 'h5ls', 'hydra_nameserver', 'mpicxx', 'h5jam', 'ph5diff', 'h5redeploy', 'mpif90', 'h5mkgrp', 'h5pcc', 'h5perf_serial', 'h52gif', 'h5repack', 'mpivars', 'mpifort', 'mpif77', 'parkill', 'h5diff', 'mpiexec.hydra', 'hydra_persist', 'h5pfc', 'h5stat', 'hydra_pmi_proxy', 'mpicc'] [] ['mcc', 'cmpfillin', 'cgal_make_macosx_app', 'cgal_create_CMakeLists', 'ndmetis', 'gpmetis', 'deploytool', 'matlab', 'cgal_create_cmake_script', 'mbuild', 'm2gmetis', 'mex', 'mpmetis', 'graphchk'] ['grpconv', 'rpc.mountd', 'x2gocleansessions', 'su-to-root', 'cupsfilter', 'lpadmin', 'safe_finger', 'grpunconv', 'deluser', 'iconvconfig', 'update-passwd', 'rsyslogd', 'grub-mkconfig', 'tor-instance-create', 'dmidecode', 'dnsmasq', 'install-sgmlcatalog', 'dkms', 'NetworkManager', 'rtcwake', 'rpc.svcgssd', 'install-menu', 'update-icon-caches', 'nfsidmap', 'hddtemp', 'pppoeconf', 'nfnl_osf', 'update-alternatives', 'fdformat', 'laptop-detect', 'popcon-largest-unused', 'dpkg-preconfigure', 'logrotate', 'groupmod', 'invoke-rc.d', 'update-pciids', 'update-default-aspell', 'filefrag', 'create-cracklib-dict', 'kerneloops', 'cupsaccept', 'setvesablank', 'pwconv', 'zic', 'newusers', 'dpkg-reconfigure', 'ownership', 'pam_timestamp_check', 'dpkg-divert', 'useradd', 'popularity-contest', 'xfce4-kiosk-query', 'tcpdump', 'blkmapd', 'cupsctl', 'pppdump', 'pm-suspend-hybrid', 'sensors-detect', 'update-default-wordlist', 'nfsstat', 'saned', 'readprofile', 'cppw', 'update-java-alternatives', 'pppd', 'update-grub-gfxpayload', 'ModemManager', 'pam-auth-update', 'update-dictcommon-hunspell', 'cupsaddsmb', 'e4defrag', 'update-rc.d', 'update-info-dir', 'acpid', 'chpasswd', 'arp', 'usb_modeswitch', 'update-inetd', 'paperconfig', 'isadump', 'vigr', 'lpc', 'thermald', 'delgroup', 'vbetool', 'remove-default-ispell', 'tcpdchk', 'cpgr', 'select-default-ispell', 'rpcdebug', 'tarcat', 'getweb', 'usb_modeswitch_dispatcher', 'pwck', 'pm-hibernate', 'remove-shell', 'update-fonts-alias', 'service', 'alsa-info.sh', 'gss_clnt_send_err', 'rpc.idmapd', 'remove-default-wordlist', 'ippusbxd', 'cracklib-check', 'cracklib-format', 'tor', 'cups-genppdupdate', 'grub-probe', 'guest-account', 'irqbalance', 'avahi-daemon', 'cron', 'sshd', 'unity-greeter', 'rmt-dump', 'update-usbids', 'pwunconv', 'gss_destroy_creds', 'nrpe', 'addgnupghome', 'pm-powersave', 'apparmor_status', 'chat', 'nfsdcltrack', 'install-docs', 'update-gsfontmap', 'groupadd', 'cracklib-unpacker', 'visudo', 'update-grub2', 'exportfs', 'mklost+found', 'ip6tables-apply', 'add-shell', 'update-binfmts', 'rmt', 'locale-gen', 'select-default-wordlist', 'pptpsetup', 'update-default-ispell', 'grpck', 'rmt-tar', 'x2goshowblocks', 'nfsiostat', 'mkinitramfs', 'lpinfo', 'tcpd', 'ispell-autobuildhash', 'update-cracklib', 'gnome-menus-blacklist', 'x2golistsessions_root', 'update-ca-certificates', 'ufw', 'cupsd', 'aa-exec', 'cupsenable', 'lpmove', 'bluetoothd', 'aptd', 'aspell-autobuildhash', 'update-mime', 'start-statd', 'gconf-schemas', 'reject', 'grub-bios-setup', 'nologin', 'make-ssl-cert', 'update-grub', 'grub-macbless', 'usermod', 'ldattach', 'addgroup', 'alsactl', 'rpc.nfsd', 'pam_getenv', 'update-icon-caches.gtk2', 'uuidd', 'upgrade-from-grub-legacy', 'rtkitctl', 'mate-power-backlight-helper', 'update-dictcommon-aspell', 'vcstime', 'pppstats', 'applygnupgdefaults', 'pptp', 'update-xmlcatalog', 'aa-remove-unknown', 'grub-install', 'rpcinfo', 'vpddecode', 'validlocale', 'gparted', 'iucode_tool', 'adduser', 'tcpdmatch', 'accept', 'try-from', 'usbmuxd', 'grub-mkdevicemap', 'isaset', 'iio-sensor-proxy', 'tunelp', 'arpd', 'aa-status', 'rpc.gssd', 'mate-display-properties-install-systemwide', 'update-locale', 'and', 'dpkg-statoverride', 'cupsreject', 'tzconfig', 'gpartedbin', 'update-initramfs', 'update-mate-menu-x2go', 'grub-set-default', 'chgpasswd', 'update-fonts-dir', 'update-catalog', 'iptables-apply', 'anacron', 'toshsat1800-irdasetup', 'realm', 'update-fonts-scale', 'x2godbadmin', 'accessdb', 'vipw', 'cups-browsed', 'pppoe-discovery', 'userdel', 'e2freefrag', 'rfkill', 'grub-reboot', 'cracklib-packer', 'lightdm-session', 'pm-suspend', 'pppconfig', 'mountstats', 'genl', 'lightdm', 'chroot', 'cupsdisable', 'biosdecode', 'iucode-tool', 'avahi-autoipd', 'groupdel'] ['rcp', 'gem2.3', 'mate-session-inhibit', 'asan_symbolize-3.9', 'llvm-mc-3.8', 'foo2xqx', 'x2goruncommand', 'flipdiff', 'cinnamon-session-cinnamon2d', 'elfedit', 'c_rehash', 'monitor-sensor', 'host', 'pon', 'dbus-monitor', 'qdoc', 'hp-doctor', 'mclasserase', 'mkfontdir', 'dh_installmodules', 'x86_64-linux-gnu-ld', 'pbmtext', 'check-language-support', 'wall', 'flock', 'foo2hbpl2-wrapper', 'unzipsfx', 'qmlplugindump', 'etags', 'ld.bfd', 'sha384sum', 'rtstat', 'pilfile', 'arm2hpdl', 'llvm-dis-3.9', 'telnet.netkit', 'mpirun.openmpi', 'mlocate', 'syslinux-legacy', 'dh_suidregister', 'llvm-extract', 'llvm-nm', '7z', 'su-to-root', 'llvm-mc-3.9', 'scanimage', 'vi', 'pdfunite', 'ngettext', 'pnmpsnr', 'hp-scan', 'xfconf-query', 'updatedb.mlocate', 'pdftops', 'llvm-symbolizer-3.9', 'lowriter', 'mdeltree', 'lsb_release', 'hp-info', 'grub-mkrescue', 'busctl', 'foo2zjs-wrapper', 'nm-connection-editor', 'orte-dvm', 'setleds', 'x86_64-linux-gnu-readelf', 'last', 'pbmclean', 'gawk', 'xdg-open', 'ubuntu-support-status', 'ranlib', 'ruby', 'cpp-5', 'mdir', 'pdfimages', 'fitstopnm', 'icontopbm', 'dh_auto_test', 'po2debconf', 'intel_display_crc', 'gucharmap', 'gnome-calculator', 'activity-log-manager', 'compare', 'pnmtoxwd', 'mdel', 'min12xxw', 'system-config-printer-applet', 'routel', 'gfortran', 'cinnamon-session', 'pkcheck', 'w.procps', 'msd-locate-pointer', 'ppmflash', 'pbmtonokia', 'word-list-compress', 'qmlprofiler', 'mmd', 'brushtopbm', 'msgunfmt', 'gpg-zip', 'intel_panel_fitter', 'cinnamon-extension-tool', 'cups-calibrate', 'pcxtoppm', 'lsdiff', 'uic3', 'deja-dup', 'amuFormat.sh', 'ppmchange', 'gnome-terminal.wrapper', 'qmleasing', 'java', 'obj2yaml', 'pbmtoppa', 'tracepath6', 'dgscat-int32', 'whoopsie-preferences', 'rawtoppm', 'splitfont', 'hwloc-gather-topology', 'nmtui', 'showrgb', 'gkbd-keyboard-display', 'unexpand', 'caja-connect-server', 'emacs24-x', 'llvm-mc', 'apport-unpack', 'view', 'gsdj500', 'ompi-top', 'ppmtoyuvsplit', 'clang-apply-replacements-3.9', 'mate-volume-control-applet', 'grog', 'x86_64-linux-gnu-gcc-ar', 'rpmverify', 'pnmsmooth', 'intel_framebuffer_dump', 'ld.gold', 'mate-appearance-properties', 'llvm-c-test-3.8', 'msgfmt', 'dh_icons', 'msggrep', 'yelp', 'apt-cache', 'llvm-nm-3.9', 'ppmspread', 'llvm-readobj-3.9', 'hcitool', 'llvm-dsymutil-3.9', 'unattended-upgrades', 'dropbox', 'mate-session', 'ppmfade', 'mate-search-tool', 'whereis', 'aplay', 'llc', 'pbmto10x', 'ftp', 'pnmcat', 'pnmtotiff', 'systemd-cat', 'grub-mklayout', 'lnstat', 'pbmtoatk', 'hp-pkservice', 'cinnamon-session-cinnamon', 'pg', 'deja-dup-preferences', 'csplit', 'llvm-dwarfdump', 'users', 'llvm-bcanalyzer-3.9', 'lwp-request', 'write', 'rlogin', 'pdf2dsc', 'intel_lid', 'dbus-run-session', 'gvfs-ls', 'pwgen', 'pgmtopbm', 'udisksctl', 'msgfilter', 'env', 'pstruct', 'gslj', 'glxinfo', 'bluetooth-sendto', 'xedid', 'intel-gen4disasm', 'ppmtopcx', 'mate-about', 'renice', 'rpmspec', 'hp-clean', 'pgmnorm', 'msginit', 'unity-webapps-runner', 'fail2ban-server', 'install-menu', 'f77', 'x2gofm', 'xlsfonts', 'snapctl', 'gsnd', 'xfce4-panel', 'gettext.sh', 'pgmtoppm', 'ppmtotga', 'xedit', 'mpiexec.openmpi', 'x86_64-linux-gnu-ld.bfd', 'rpcgen', 'lzcat', 'wpa_passphrase', 'dh_installppp', 'dpkg-source', 'ppmhist', 'google-chrome', 'llvm-config-3.8', 'pacat', 'mmount', 'verify-uselistorder-3.8', 'x86_64-linux-gnu-cpp', 'gpasswd', 'gst-device-monitor-1.0', 'bmptoppm', 'dgscat', 'obj2yaml-3.9', 'updatedb', 'x86_64-linux-gnu-gcov', 'xditview', 'pbmtopi3', 'printerbanner', 'recountdiff', 'gcc', 'shuf', 'llvm-lib-3.8', 'dh_testroot', 'ppmdist', 'localectl', 'cinnamon-file-dialog', 'from', 'intel_display_poller', 'xfwm4-settings', 'lpr', 'mate-mouse-properties', 'hp-plugin-ubuntu', 'iptables-xml', 'x86_64-linux-gnu-elfedit', 'dh_builddeb', 'eqn', 'resize', 'cinnamon-looking-glass', 'pamoil', 'x86_64-linux-gnu-c++filt', 'opt-3.9', 'update-alternatives', 'gnome-screenshot', 'anytopnm', 'alsabat', 'tap2rpm', 'arecord', 'lzfgrep', 'psfstriptable', 'llvm-size', 'dbus-cleanup-sockets', 'gatttool', 'pbmpscale', 'clhsdb', 'llvm-ranlib', 'llvm-tblgen', 'test', 'svnauthz-validate', 'libwacom-list-local-devices', 'ms_print', 'orbd', 'thunar', 'llvm-cxxdump-3.9', 'pnmpad', 'gtbl', 'llvm-link-3.9', 'ibus-daemon', 'savelog', 'llvm-cov-3.9', 'dpkg-gencontrol', 'cupstestdsc', 'clear_console', 'grub-mkrelpath', 'dehtmldiff', 'mkfontscale', 'c-index-test-3.9', 'nemo-connect-server', 'llc-3.8', 'mate-wm', 'engrampa', 'mate-system-monitor', 'infotocap', 'pbmtog3', 'pamon', 'pnmtojpeg', 'speech-dispatcher', 'lpoptions', 'thunar-volman', 'dgmap', 'xfontsel', 'xconsole', 'yes', 'x2gocmdexitmessage', 'atril-previewer', 'lessfile', 'x2goversion', 'conjure-im6', 'apt-key', 'gnome-system-log-pkexec', 'mate-keyboard-properties', 'nvidia-cuda-mps-server', 'grub-mount', 'bdftruncate', 'intel_gpu_top', 'aplaymidi', 'mtype', 'ssh-import-id-gh', 'x2goumount-session', 'opt-3.8', 'jedit', 'intel_stepping', 'lzgrep', 'addpart', 'flex', 'gs', 'xscreensaver-getimage-video', 'grepdiff', 'xwud', 'xdg-screensaver', 'lupdate', 'mate-font-viewer', 'thunar-volman-settings', 'xdg-desktop-icon', 'gapplication', 'dgscat-int64', 'getent', 'apt-ftparchive', 'xzdiff', 'sane-find-scanner', 'cinnamon-slideshow', 'gcalccmd', 'update-desktop-database', 'apport-bug', 'foo2zjs', 'svn', 'ompi-ps', 'ppmtoilbm', 'ppmquant', 'piconv', 'unshare', 'kerneloops-submit', 'vstp', 'browse', 'rpmkeys', 'foo2hp', 'ubuntu-webapps-update-index', 'mpiexec', 'gvfs-move', 'gist-paste', 'pygettext2.7', 'esc-m', 'whois', 'fakeroot', 'clang-3.9', 'ompi-server', 'setterm', 'linux-version', 'bootctl', 'fc-validate', 'pnmtosgi', 'msgcmp', 'clang-query-3.9', 'x2golistdesktops', 'pasuspender', 'ico', 'nvidia-xconfig', 'resizecons', 'foo2hbpl2', 'debconf-apt-progress', 'pilconvert', 'pnmtotiffcmyk', 'mbadblocks', 'xfsinfo', 'systemd-analyze', 'aspell', 'gnome-keyring', 'sotruss', 'dh_makeshlibs', 'pinentry-x11', 'convert', 'intel_backlight', 'llvm-ar-3.9', 'transset', 'intel_watermark', 'cg_annotate', 'apport-collect', 'wish', 'pluma', 'xflock4', 'gnome-software', 'uuidgen', 'mate-session-properties', 'unity-settings-daemon', 'git-upload-archive', 'xscreensaver-getimage-file', 'g++-5', 't1disasm', 'groups', 'gprof', 'ppmtompeg', 'xfce4-appfinder', 'pic', 'tail', 'pycompile', 'vino-preferences', 'apropos', 'dh_installchangelogs', 'conch', 'ssh-agent', 'lastlog', 'pnmdepth', 'eject', 'libnetcfg', 'lscpu', 'cmpfillin', 'qmlmin', 'sensible-editor', 'hp-align', 'mate-window-properties', 'systemd-stdio-bridge', 'display-im6', 'startxfce4', 'lwp-download', 'irb', 'qmltestrunner', 'qhelpconverter', 'ppmdither', 'scp', 'llvm-extract-3.9', 'llvm-nm-3.8', 'gst-install', 'mkmanifest', 'pilfile.py', 'orca-dm-wrapper', 'pydoc2.7', 'md5sum.textutils', 'hostnamectl', 'prezip', 'rdoc2.3', 'marco-window-demo', 'pnmsplit', 'pdb3.5', 'fonttosfnt', 'smproxy', 'x86_64-linux-gnu-addr2line', 'mpirun', 'atobm', 'ispell-wrapper', 'foo2hiperc', 'git', 'vino-passwd', 'zeitgeist-datahub', 'bioradtopgm', 'dpkg-buildpackage', 'cpan5.22-x86_64-linux-gnu', 'mpartition', 'pvrenderserver', 'prove', 'ppmlabel', 'fix-qdf', 'setfacl', 'initctl2dot', 'erb2.3', 'gpgsplit', 'cs2cs', 'metacity-window-demo', 'nemo-desktop', 'nautilus-autorun-software', 'dgmap-long', 'mate-terminal.wrapper', 'xfce4-mime-settings', 'avahi-publish-service', 'combinediff', 'cinnamon-control-center', 'ppmtomitsu', 'usbhid-dump', 'dpkg-divert', 'ps2pdfwr', 'mkpasswd', 'aconnect', 'nawk', 'debconf-set-selections', 'vtk6python', 'dh_link', 'mmove', 'cinnamon-session-quit', 'foo2xqx-wrapper', 'ppmnorm', 'hp-query', 'kbdinfo', 'clang-include-fixer-3.9', 'top', 'x2gogetapps', 'awk', 'pildriver', 'msd-datetime-mechanism', 'which', 'rfcomm', 'desktop-file-edit', 'dgmap-int64', 'openssl', 'hwloc-ps', 'llvm-ranlib-3.9', 'convert-im6', 'infobrowser', 'Thunar', 'lprm', 'llvm-as-3.9', 'dpkg-checkbuilddeps', 'bccmd', 'grub-kbdcomp', 'mcd', 'dh_installcatalogs', 'orte-clean', 'gtk-launch', 'xkbvleds', 'paste', 'display', 'cg_merge', 'pnmtopalm', 'dgpart', 'man', 'x86_64-pc-linux-gnu-pkg-config', 'djpeg', 'lp', 'bugpoint-3.8', 'xscreensaver-text', 'find-all-symbols-3.9', 'volname', 'leaftoppm', 'gnome-session-quit', 'ctest', 'gpg-connect-agent', 'nemo-autorun-software', 'orage', 'gemtopnm', 'ar', 'grub-glue-efi', 'gtk-builder-tool', 'llvm-ranlib-3.8', 'llvm-dwarfdump-3.9', 'appres', 'rename.ul', 'mkfifo', 'pi1toppm', 'mesg', 'printenv', 'rstart', 'chcon', 'fc-cache', 'c99', 'xfrun4', 'pbmtobbnbg', 'xzmore', 'nslookup', 'x2gosetkeyboard', 'od', 'x86_64', 'splain', 'mate-dictionary', 'xkbcomp', 'trust', 'dh_autotools-dev_updateconfig', 'chardet', 'cheese', 'ppmtoleaf', 'xlsclients', 'pbmupc', 'xzcmp', 'mmcli', 'tr', 'synclient', 'thunar-settings', 'edit', 'a11y-profile-manager-indicator', 'lldb-server-3.9.1-3.9', 'make', 'system-config-printer', 'x2goagent', 'pilprint.py', 'gconf-merge-tree', 'ocat', 'dh_installcron', 'tificc', 'gsbj', 'composite-im6', 'pbmtopgm', 'caja-autorun-software', 'pbmmask', 'ghostscript', 'uz', 'gnome-session-inhibit', 'pnmtosir', 'cpan', 'yuvsplittoppm', 'qtchooser', 'dh_desktop', 'systemd-delta', 'ciptool', 'on_ac_power', 'passwd', 'qmlbundle', 'nroff', 'mshortname', 'fstopgm', 'git-shell', 'gvfs-monitor-file', 'ptar', 'alsamixer', 'install-info', 'svnsync', 'gcc-ar-5', 'glxheads', 'x86_64-linux-gnu-g++', 'cupstestppd', 'xfdesktop', 'acpi_listen', 'ps2ps2', 'psidtopgm', 'msgcat', 'xwdtopnm', 'colrm', 'llvm-tblgen-3.8', 'tput', 'dc', 'xdg-user-dir', 'foo2hiperc-wrapper', 'ppmtoyuv', 'winicontoppm', 'pbmreduce', 'nvidia-smi', 'nsenter', 'sensors', 'namei', 'nmtui-connect', 'slxdecode', 'sum', 'geod', 'x86_64-linux-gnu-gfortran', 'clang++-3.9', 'ipcs', 'x86_64-linux-gnu-gcov-tool', 'pnmtoplainpnm', 'rpmdb', 'gcov', 'svnserve', 'json_pp', 'llvm-lto-3.9', 'opldecode', 'qml', 'pgmedge', 'sbigtopgm', 'skill', 'desktop-file-install', 'pnmtoddif', 'foo2lava', 'pnmcrop', 'poff', 'pdb', 'slogin', 'ubuntu-software', 'ppmdim', 'ibus-setup', 'gst-discoverer-1.0', 'xfce4-notifyd-config', 'apt-get', 'bluetoothctl', 'zip', 'ctags.emacs24', 'gst-launch-1.0', 'chardet3', 'baobab', 'avahi-publish', 'npm', 'fallocate', 'pnmhisteq', 'eyuvtoppm', 'pgmbentley', 'atril-thumbnailer', 'tclsh', 'llvm-pdbdump-3.9', 'base32', 'mate-panel-screenshot', 'viewres', 'fc-match', 'xfwm4', 'ucf', 'stat', 'nvidia-debugdump', 'seq', 'parec', 'lodraw', 'sbkeysync', 'koi8rxterm', 'gvfs-monitor-dir', 'xfd', 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'xfce4-session-logout', 'editdiff', 'pvtkpython', 'lstopo', 'llvm-ar-3.8', 'pftp', 'xkeystone', 'dpkg-maintscript-helper', 'zipcloak', 'dbus-send', 'hp-probe', 'plog', 'rctest', 'gpic', 'transicc', 'vglconfig', 'kmodsign', 'llvm-dis', 'llvm-ar', 'tsort', 'update-menus', 'gnome-terminal.real', 'llvm-profdata-3.8', 'pkttyagent', 'gsettings', 'streamer', 'lzma', 'podebconf-report-po', 'see', 'hp-setup', 'linux-check-removal', 'join', 'pnmindex', 'vgdb', 'ppmtopi1', 'crontab', 'mousetweaks', 'giftopnm', 'qmlscene', 'umax_pp', 'orte-submit', 'tbl', 'pstree', 'hardening-check', 'pod2html', 'grub-script-check', 'addr2line', 'cd-create-profile', 'btmon', 'dpkg-parsechangelog', 'logger', 'mtrace', 'uniq', 'gdb-add-index', 'compare-im6', 'ppmcolors', 'avahi-set-host-name', 'xdiagnose-pkexec', 'dh_compress', 'ppmtowinicon', 'llvm-mcmarkup-3.9', 'pager', 'simple-scan', 'rview', 'pfbtopfa', 'rasttopnm', 'pnmscalefixed', 'webapp-container-hook', 'cinnamon-settings', 'tload', 'gnome-keyring-3', 'gslp', 'torsocks', 'glxdemo', 'helpztags', 'designer', 'dh_installwm', 'ffmpegthumbnailer', 'plainbox-qml-shell', 'dirname', 'amixer', 'mpmetis', 'gnome-disk-image-mounter', 'fc-scan', 'mdatopbm', 'dh_auto_clean', 'paplay', 'gnome-session-properties', 'pgmtolispm', 'file', 'yuvtoppm', 'hwloc-assembler', 'dh_auto_build', 'llvm-symbolizer-3.8', 'isdv4-serial-debugger', 'xpmtoppm', 'xsubpp', 'plainbox-trusted-launcher-1', 'xclipboard', 'unsquashfs', 'xdg-user-dirs-update', 'f95', 'qdbuscpp2xml', 'gnome-calendar', 'dgpart-int32', 'cinnamon-settings-daemon', 'pdb3', 'intel_gtt', 'usb-devices', 'ssh-keyscan', 'modularize-3.9', 'mate-screensaver', 'nproc', 'editres', 'spctoppm', 'cinnamon-settings-users', 'paperconf', 'pygettext3', 'gvfs-tree', 'printf', 'avahi-resolve-host-name', 'charmap', 'manhole', 'x86_64-linux-gnu-ld.gold', 'xvidtune', 'msgconv', 'x-www-browser', 'runcon', 'lslogins', 't1mac', 'kbxutil', 'gvfs-trash', 'cinnamon-screensaver-lock-dialog', 'x86_64-linux-gnu-strip', 'xfce4-appearance-settings', 'luit', 'linux-update-symlinks', 'zipdetails', 'llvm-diff', 'foo2qpdl', 'dgpart-int64', 'qmlviewer', 'debconf-escape', 'unlzma', 'rletopnm', 'llvm-bcanalyzer-3.8', 'xsetmode', 'llvm-mcmarkup-3.8', 'gst-inspect-1.0', 'x86_64-linux-gnu-ranlib', 'peekfd', 'dpkg-vendor', 'tz_convert', 'Xorg', 'gtk-update-icon-cache-3.0', 'gnome-www-browser', 'pdftocairo', 'msgexec', 'pnmnlfilt', 'rawtopgm', 'nm', 'pnmmontage', 'seahorse', 'update-manager', 'dh_lintian', 'llvm-diff-3.9', 'pkill', 'llvm-split-3.9', 'llvm-size-3.9', 'sudo', 'troff', 'python3m', 'pstopnm', 'pngtopnm', 'x86_64-linux-gnu-gprof', 'pgmenhance', 'erb', 'gvfs-rename', 'gnome-control-center', 'vtkWrapPython-6.2', 'column', 'mate-about-me', 'X', 'hwloc-info', 'id', 'mate-system-log', 'dh_installudev', 'printer-profile', 'x2gofeature', 'mk_modmap', 'startx', 'lldb-server-3.9', 'file2brl', 'strip', 'dh_autotools-dev_restoreconfig', 'lastb', 'gvfs-cat', 'pinentry', 'gksu', 'ppmtopuzz', 'pnmconvol', 'ssh-import-id-lp', 'pilprint', 'pnmtofiasco', 'dpkg-statoverride', 'llvm-cov-3.8', 'pbmmake', 'software-properties-gtk', 'intel-gpu-overlay', 'compiz-decorator', 'enchant-lsmod', 'i686-linux-gnu-pkg-config', 'syndaemon', 'dh_prep', 'psfxtable', 'libreoffice', 'flex++', 'apt', 'caja-file-management-properties', 'intel-gen4asm', 'emacs24', 'py3clean', 'btattach', 'systemd-cgls', 'signond', 'prlimit', 'setarch', 'lorder', 'gvfs-less', 'lldb-3.9.1-3.9', 'sg', 'cautious-launcher', 'policytool', 'prime-supported', 'qpdldecode', 'pygettext3.5', 'onboard-settings', 'pamfile', 'setsid', 'crc32', 'x86_64-linux-gnu-gcc-ranlib', 'whoami', 'mawk', 'llvm-profdata-3.9', 'ompi_info', 'im-launch', 'ubuntu-drivers', 'gparted-pkexec', 'install', 'unattended-upgrade', 'dgmap-int32', 'dpkg-buildflags', 'dh_movefiles', 'pnminterp', 'google-chrome-stable', 'print', 'pl2pm', 'xscreensaver-demo', 'llvm-as-3.8', 'hipstopgm', 'svnfsfs', 'pbmtoybm', 'encguess', 'svnmucc', 'x2gocaja', 'getfacl', 'llvm-lib-3.9', 'mzip', 'ppmtogif', 'upload-system-info', 'mscompress', 'qmlimportscanner', 'intel_l3_parity', 'shred', 'lintian', 'ompi-clean', 'lp_solve', 'update-notifier', 'dh_clean', 'dh_auto_configure', 'mate-thumbnail-font', 'dh_strip_nondeterminism', 'time', 'vglgenkey', 'firefox', 'grub-menulst2cfg', 'identify', 'snap', 'pnmremap', 'gcat', 'mimeopen', 'metacity-message', 'dh_installmime', 'ppmtopgm', 'c89-gcc', 'gvfs-mkdir', 'isovfy', 'xauth', 'lsinitramfs', 'preunzip', 'pamdice', 'webapp-container', 'yaml2obj', 'zeisstopnm', 'invgeod', 'mate-invest-chart', 'msgcomm', 'asciitopgm', 'xfce4-about', 'ipod-read-sysinfo-extended', 'pygettext', 'dgtst-int64', 'pico', 'systemd-cgtop', 'avahi-browse-domains', 'mcat', 'graphchk', 'zenity', 'hd', 'eps2eps', 'pvserver', 'pgmoil', 'pcimodules', 'xlet-settings', 'nmtui-edit', 'sensible-pager', 'pnmtofits', 'pdftotext', 'marco', 'parkill', 'pphs', 'nmtui-hostname', 'less', 'animate', 'tkconch', 'ptargrep', 'dgord-int64', 'faked-tcp', 'intel_aubdump', 'lli-child-target-3.9', 'zipnote', 'createfontdatachunk', 'run-mailcap', 'enchant', 'xterm', 'nm-online', 'partx', 'nmcli', 'setmetamode', 'systemd-run', 'pod2usage', 'rgrep', 'tabs', 'xkbwatch', 'gvfs-open', 'stdbuf', 'paraview', 'dpkg-name', 'caja', 'x86_64-linux-gnu-gcc-nm', 'session-installer', 'foo2slx-wrapper', 'alsaloop', 'nvidia-persistenced', 'ischroot', 'xprop', 'sessreg', 'realpath', 'xfdesktop-settings', 'f2py', 'symcryptrun', 'pdfinfo', 'setlogcons', 'transmission-gtk', 'bmptopnm', 'sudoedit', 'torify', 'pbmtoxbm', 'mpiexec.hydra', 'fail2ban-client', 'reset', 'mate-control-center', 'sudoreplay', 'desktop-file-validate', 'xpci', 'file-rename', 'hp-config_usb_printer', 'nsupdate', 'pbmtoplot', 'x11perfcomp', 'fc-cat', 'rendercheck', 'xkbbell', 'gnome-file-share-properties', 'dh_installinfo', 'xfce4-popup-windowmenu', 'gnome-system-monitor', 'mtools', 'cmp', 'qlalr', 'ntfsdecrypt', 'foo2oak', 'ppmtv', 'ppmcie', 'dh_installmenu', 'lofromtemplate', 'codepage', 'tifftopnm', 'lconvert', 'lspgpot', 'hsdb', 'intel_opregion_decode', 'llvm-rtdyld', 'ssh-add', 'x86_64-linux-gnu-gcc-5', 'mate-keybinding-properties', 'rediff', 'hydra_persist', 'ibus', 't1asm', 'hwloc-annotate', 'ppmtolj', 'pamdeinterlace', 'intel_gpu_time', 'xfhelp4', 'etags.emacs24', 'ps2ascii', 'ncal', 'mate-default-applications-properties', 'deallocvt', 'twistd', 'rmiregistry', 'igawk', 'dh_gconf', 'tee', 'intel_forcewaked', 'hwloc-distrib', 'gsettings-schema-convert', 'bashbug', 'mcomp', 'linguist', 'tracepath', 'oclock', 'dh_installman', 'glib-compile-resources', 'padsp', 'deb-systemd-invoke', 'pi3topbm', 'gdbserver', 'dh_python3', 'sancov-3.9', 'pnmpaste', 'taskset', 'imgtoppm', 'igt_stats', '411toppm', 'bsd-write', 'scp-dbus-service', 'mpaste', 'x-terminal-emulator', 'gpgconf', 'intel-virtual-output', 'rmid', 'evince-thumbnailer', 'llvm-as', 'lz', 'wc', 'ppmcolormask', 'ssh-argv0', 'split', 'dotlockfile', 'install-printerdriver', 'mate-network-properties', 'fixcvsdiff', 'xscreensaver-command', 'globaltime', 'watchgnupg', 'col', 'i386', 'catman', 'shasum', 'dh_installexamples', 'eog', 'sha512sum', 'pnmnoraw', 'dh_perl', 'dh_installxfonts', 'dh_installmanpages', 'xrefresh', 'pyclean', 'debconf-copydb', 'fc-list', 'loffice', 'dh_installifupdown', 'atktopbm', 'cinnamon-desktop-editor', 'chardetect3', 'gnome-language-selector', 'dpkg-gensymbols', 'sgitopnm', 'gcc-ar', 'script', 'xmlpatternsvalidator', 'verify-uselistorder-3.9', 'bluemoon', 'btmgmt', 'lli', 'hwloc-distances', 'update-mime-database.real', 'llvm-dis-3.8', 'free', '2to3', 'wish8.6', 'dconf', 'xzfgrep', 'qdoc3', 'POST', 'pathchk', 'vim.tiny', 'x2gostartagent', 'proj', 'x86_64-linux-gnu-g++-5', 'x86_64-linux-gnu-nm', 'netkit-ftp', 'qmake', 'gnome-open', 'dh_strip', 'c89', 'pinky', 'dbiproxy', 'xrandr-tool', 'pf2afm', 'x2goresume-session', 'pgmslice', 'sputoppm', 'sbverify', 'mate-power-manager', 'pdftohtml', 'rpmquery', 'deb-systemd-helper', 'rhythmbox-client', 'apt-add-repository', 'pamstack', 'nvidia-cuda-mps-control', 'intel_dump_decode', 'python2', 'lli-3.8', 'pnmtorast', 'gdbus', 'ps2txt', 'enhancer', 'ppmshadow', 'qcollectiongenerator', 'strings', 'neqn', 'pkexec', 'cut', 'pnmgamma', 'dh_dkms', 'gtf', 'bitmap', 'hydra_pmi_proxy', 'chage', 'viewer.py', 'ppdpo', 'pydoc3.5', 'locate', 'chrt', 'gcov-tool', 'x2goumount_session', 'spellintian', 'newgrp', 'gnome-power-statistics', 'pstree.x11', 'invproj', 'foo2lava-wrapper', 'sdptool', 'getkeycodes', 'HEAD', 'bugpoint', 'grub-syslinux2cfg', 'atril', 'python3.5m', 'pamstretch', 'gconftool-2', 'ttfread', 'py3compile', 'pastebin', 'xgc', 'zipgrep', 'lispmtopgm', 'rgb3toppm', 'intel_reg_checker', 'ppmtopict', 'gpu-manager', 'lrelease', 'pgmcrater', 'dh_install', 'infocmp', 'scan-view-3.9', 'hbpldecode', 'fail2ban-regex', 'usb_printerid', 'gcc-nm', 'nad2bin', 'ppmtopj', 'qtdiag', 'gcr-viewer', 'x2goumount-session-mate', 'x86_64-linux-gnu-pkg-config', 'unity-control-center', 'mogrify-im6', 'pbmpage', 'ebrowse', 'dh_update_autotools_config', 'dh_auto_install', 'pdfdetach', 'xfce4-keyboard-settings', 'dbus-uuidgen', 'compose', 'ppmtoicr', 'hwloc-calc', 'ex'] ['dosfslabel', 'dumpe2fs', 'ntfsundelete', 'upstart-event-bridge', 'mkfs.bfs', 'iwspy', 'fsfreeze', 'apparmor_parser', 'ip6tables-save', 'findfs', 'mount.ntfs', 'telinit', 'restore', 'apm_available', 'reload', 'start', 'pccardctl', 'getpcaps', 'chcpu', 'stop', 'ntfslabel', 'killall5', 'upstart', 'get-quirk-options', 'udevadm', 'start-stop-daemon', 'key.dns_resolver', 'tune2fs', 'regdbdump', 'rtacct', 'halt', 'fsck.msdos', 'ifup', 'zramctl', 'rdump', 'swapoff', 'mkntfs', 'rtmon', 'installkernel', 'upstart-local-bridge', 'swapon', 'getcap', 'mntctl', 'mii-tool', 'getty', 'setvtrgb', 'fsck.nfs', 'runlevel', 'sfdisk', 'ntfscp', 'iptables-save', 'umount.udisks2', 'lsmod', 'e2fsck', 'mkfs.ntfs', 'on_ac_power', 'mkfs', 'fatlabel', 'e2undo', 'iwconfig', 'pivot_root', 'iptables-restore', 'hwclock', 'unix_chkpwd', 'mount.nfs4', 'sgdisk', 'poweroff', 'fixparts', 'mount.nfs', 'umount.nfs', 'logsave', 'tipc', 'rpc.statd', 'e2label', 'ifdown', 'isosize', 'wpa_action', 'swaplabel', 'reboot', 'partprobe', 'hdparm', 'fstrim', 'wpa_cli', 'pam_tally', 'ntfsresize', 'bridge', 'fsck.vfat', 'brltty-setup', 'mkfs.vfat', 'rmmod', 'pam_extrausers_update', 'insmod', 'ip6tables-restore', 'dump', 'mkswap', 'mount.fuse', 'mkfs.fat', 'lspcmcia', 'ifquery', 'ipmaddr', 'prime-switch', 'mke2fs', 'resolvconf', 'rarp', 'cgdisk', 'tc', 'capsh', 'rrestore', 'iwlist', 'iwevent', 'ntfsclone', 'dhclient-script', 'fsck.ext4', 'mkhomedir_helper', 'alsa', 'modprobe', 'mountall', 'xtables-multi', 'upstart-udev-bridge', 'iptunnel', 'crda', 'brltty', 'fsck.ext3', 'pam_extrausers_chkpwd', 'request-key', 'acpi_available', 'init', 'ldconfig.real', 'blkid', 'sm-notify', 'mkfs.cramfs', 'depmod', 'debugfs', 'restart', 'sulogin', 'upstart-file-bridge', 'gdisk', 'plymouthd', 'cfdisk', 'resize2fs', 'fsck.fat', 'ethtool', 'ip6tables', 'fdisk', 'showmount', 'sysctl', 'iptables', 'shutdown', 'modinfo', 'iw', 'switch_root', 'iwpriv', 'ldconfig', 'route', 'ctrlaltdel', 'upstart-dbus-bridge', 'losetup', 'fsck.ext2', 'fsck', 'mkdosfs', 'blkdiscard', 'fsck.cramfs', 'ureadahead', 'dhclient', 'badblocks', 'kbdrate', 'mkfs.ext3', 'initctl', 'mkfs.minix', 'prime-offload', 'rpcbind', 'osd_login', 'MAKEDEV', 'mkfs.ext4dev', 'create-uvm-dev-node', 'mount.ntfs-3g', 'fsck.ext4dev', 'fstab-decode', 'parted', 'mount.lowntfs-3g', 'iwgetid', 'mkfs.ext4', 'nameif', 'ip', 'wpa_supplicant', 'raw', 'setcap', 'shadowconfig', 'agetty', 'blockdev', 'upstart-socket-bridge', 'plipconfig', 'status', 'unix_update', 'u-d-c-print-pci-ids', 'pam_tally2', 'wipefs', 'fsck.minix', 'mkfs.msdos', 'ifconfig', 'slattach', 'umount.nfs4', 'runuser', 'dosfsck', 'e2image', 'mkfs.ext2'] ['ntfscmp', 'echo', 'tempfile', 'kmod', 'sync', 'sh', 'login', 'fgconsole', 'gunzip', 'mount', 'udevadm', 'sleep', 'gzip', 'lessfile', 'bzmore', 'ping6', 'open', 'bzcmp', 'ntfscluster', 'kbd_mode', 'df', 'fusermount', 'tailf', 'chown', 'mt', 'busybox', 'setfacl', 'ypdomainname', 'openvt', 'whiptail', 'which', 'zmore', 'bzip2recover', 'lsmod', 'setupcon', 'pwd', 'systemd-machine-id-setup', 'gzexe', 'findmnt', 'systemd-notify', 'fgrep', 'ntfsinfo', 'fuser', 'lowntfs-3g', 'loadkeys', 'setfont', 'netcat', 'run-parts', 'sh.distrib', 'efibootmgr', 'ntfsfallocate', 'date', 'zgrep', 'bzgrep', 'ed', 'bzcat', 'chacl', 'nc', 'netstat', 'ntfswipe', 'pidof', 'false', 'dnsdomainname', 'ntfs-3g.probe', 'cp', 'ntfs-3g', 'dash', 'bash', 'ntfs-3g.secaudit', 'keyctl', 'egrep', 'chmod', 'loginctl', 'ntfsmove', 'nano', 'lessecho', 'mountpoint', 'rnano', 'cat', 'systemd', 'hciconfig', 'mt-gnu', 'uname', 'ps', 'stty', 'zegrep', 'bzfgrep', 'ntfs-3g.usermap', 'systemctl', 'rbash', 'plymouth', 'bzegrep', 'more', 'su', 'lesspipe', 'ntfsls', 'rm', 'systemd-escape', 'static-sh', 'mv', 'kill', 'dumpkeys', 'bzless', 'vdir', 'systemd-tty-ask-password-agent', 'zfgrep', 'rmdir', 'tar', 'sed', 'zdiff', 'readlink', 'chgrp', 'touch', 'mkdir', 'ulockmgr_server', 'red', 'ln', 'journalctl', 'lesskey', 'systemd-tmpfiles', 'zcat', 'bunzip2', 'cpio', 'dir', 'networkctl', 'systemd-hwdb', 'nisdomainname', 'bzip2', 'zless', 'mktemp', 'systemd-inhibit', 'zcmp', 'unicode_start', 'systemd-ask-password', 'bzexe', 'hostname', 'grep', 'getfacl', 'ntfscat', 'znew', 'ip', 'less', 'ls', 'dd', 'zforce', 'ping', 'true', 'lsblk', 'ss', 'ntfstruncate', 'umount', 'bzdiff', 'domainname', 'wdctl', 'ntfsfix', 'uncompress', 'mknod', 'nc.openbsd', 'chvt', 'dmesg'] ['espdiff', 'gnome-mines', 'gnome-mahjongg', 'sol', 'gnome-sudoku'] [] Warning accessing /snap/bin gives errors: [Errno 2] No such file or directory: '/snap/bin' Warning accessing /home/dsu/Soft/Paraview/ParaView-5.5.0/bin gives errors: [Errno 2] No such file or directory: '/home/dsu/Soft/Paraview/ParaView-5.5.0/bin' ['mpeg2encode', 'visitprotocol', 'xml2cmake', 'makemili', 'text2polys', 'run_doxygen', 'frontendlauncher', 'xml2window', 'surfcomp', 'Doxyfile', 'xmltest', 'visit0000.session', 'time_annotation', 'visit_plugin', 'xmledit', 'xml2atts', 'curv3dprep', 'visit_transition', 'regen-ajp', 'visit_composite', 'visit', 'xml2plugin', 'xml2python', 'frontendlauncher.py', 'visitconvert', 'xml2avt', 'mkgrdbl', 'xml2info', 'xml2java', 'visit0000.session.gui'] ['codecov', 'tselect', 'icpc', 'compilervars.csh', 'xild', 'map_opts', 'gdb-ia', 'ifortvars.sh', 'ifortvars.csh', 'profdcg', 'ifort', 'proforder', 'compilervars.sh', 'gcore-ia', 'iccvars.sh', 'xiar', 'icc', 'iccvars.csh', 'profmerge', 'fpp'] Warning accessing /home/dsu/Soft/Paraview/ParaView-5.5.0/bin gives errors: [Errno 2] No such file or directory: '/home/dsu/Soft/Paraview/ParaView-5.5.0/bin' ['mpeg2encode', 'visitprotocol', 'xml2cmake', 'makemili', 'text2polys', 'run_doxygen', 'frontendlauncher', 'xml2window', 'surfcomp', 'Doxyfile', 'xmltest', 'visit0000.session', 'time_annotation', 'visit_plugin', 'xmledit', 'xml2atts', 'curv3dprep', 'visit_transition', 'regen-ajp', 'visit_composite', 'visit', 'xml2plugin', 'xml2python', 'frontendlauncher.py', 'visitconvert', 'xml2avt', 'mkgrdbl', 'xml2info', 'xml2java', 'visit0000.session.gui'] ['codecov', 'tselect', 'icpc', 'compilervars.csh', 'xild', 'map_opts', 'gdb-ia', 'ifortvars.sh', 'ifortvars.csh', 'profdcg', 'ifort', 'proforder', 'compilervars.sh', 'gcore-ia', 'iccvars.sh', 'xiar', 'icc', 'iccvars.csh', 'profmerge', 'fpp'] Path provided by --with-executables-search-path ['win32feutils.dll', 'win32fe.exe'] child config.packages.c2html 0.011327 ================================================================================ TEST alternateConfigureLibrary from config.packages.boost(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.boost(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.boost 0.001716 ================================================================================ TEST alternateConfigureLibrary from config.packages.silo(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.silo(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.silo 0.001706 ================================================================================ TEST alternateConfigureLibrary from config.packages.Random123(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.Random123(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.Random123 0.000950 ================================================================================ TEST alternateConfigureLibrary from config.packages.PARTY(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.PARTY(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.PARTY 0.000627 ================================================================================ TEST alternateConfigureLibrary from config.packages.Matlab(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.Matlab(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.Matlab 0.000538 ================================================================================ TEST alternateConfigureLibrary from config.packages.MatlabEngine(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.MatlabEngine(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.MatlabEngine 0.000554 ================================================================================ TEST alternateConfigureLibrary from config.packages.Mathematica(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.Mathematica(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.Mathematica 0.000552 ================================================================================ TEST checkDependencies from config.packages.regex(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:843) TESTING: checkDependencies from config.packages.regex(config/BuildSystem/config/package.py:843) ================================================================================ TEST configureLibrary from config.packages.regex(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:868) TESTING: configureLibrary from config.packages.regex(config/BuildSystem/config/package.py:868) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional regex Checking for library in Compiler specific search REGEX: [] ================================================================================ TEST check from config.libraries(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [regexec regcomp regfree] in library [] [] Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.libraries/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.packages.valgrind -I/tmp/petsc-oluu3nld/config.packages.MPI -I/tmp/petsc-oluu3nld/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char regexec(); static void _check_regexec() { regexec(); } char regcomp(); static void _check_regcomp() { regcomp(); } char regfree(); static void _check_regfree() { regfree(); } int main() { _check_regexec(); _check_regcomp(); _check_regfree();; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -o /tmp/petsc-oluu3nld/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.o -lstdc++ -ldl Checking for optional headers [] in Compiler specific search REGEX: ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] ================================================================================ TEST checkInclude from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] Found header files [] in ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] Checking for headers ['regex.h'] in Compiler specific search REGEX: ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] ================================================================================ TEST checkInclude from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['regex.h'] in ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] Checking include with compiler flags var CPPFLAGS ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -E -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.packages.MPI -I/tmp/petsc-oluu3nld/config.headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include /tmp/petsc-oluu3nld/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Found header files ['regex.h'] in ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] ================================================================================ TEST checkVersion from config.packages.regex(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:992) TESTING: checkVersion from config.packages.regex(config/BuildSystem/config/package.py:992) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ================================================================================ TEST checkSharedLibrary from config.packages.regex(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:926) TESTING: checkSharedLibrary from config.packages.regex(config/BuildSystem/config/package.py:926) By default we don't care about checking if the library is shared child config.packages.regex 0.210999 ================================================================================ TEST alternateConfigureLibrary from config.packages.opengl(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.opengl(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.opengl 0.002232 ================================================================================ TEST alternateConfigureLibrary from config.packages.glut(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.glut(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.glut 0.001461 ================================================================================ TEST alternateConfigureLibrary from config.packages.CoDiPack(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.CoDiPack(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.CoDiPack 0.001606 ================================================================================ TEST alternateConfigureLibrary from config.packages.adblaslapack(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.adblaslapack(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.adblaslapack 0.001601 ================================================================================ TEST alternateConfigureLibrary from config.packages.cuda(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.cuda(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.cuda 0.001482 child config.packages.cxxlibs 0.000041 ================================================================================ TEST alternateConfigureLibrary from config.packages.ADOLC(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.ADOLC(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.ADOLC 0.000754 ================================================================================ TEST locateCMake from config.packages.cmake(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/packages/cmake.py:42) TESTING: locateCMake from config.packages.cmake(config/BuildSystem/config/packages/cmake.py:42) Looking for default CMake executable Checking for program /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/cmake...not found Checking for program /home/dsu/Soft/PETSc/petsc-3.10.5/linux-gnu-opt/bin/cmake...not found Checking for program /usr/local/sbin/cmake...not found Checking for program /usr/local/bin/cmake...not found Checking for program /usr/sbin/cmake...not found Checking for program /usr/bin/cmake...found Defined make macro "CMAKE" to "/usr/bin/cmake" Looking for default CTest executable Checking for program /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/ctest...not found Checking for program /home/dsu/Soft/PETSc/petsc-3.10.5/linux-gnu-opt/bin/ctest...not found Checking for program /usr/local/sbin/ctest...not found Checking for program /usr/local/bin/ctest...not found Checking for program /usr/sbin/ctest...not found Checking for program /usr/bin/ctest...found Defined make macro "CTEST" to "/usr/bin/ctest" Running Executable WITHOUT threads to time it out Executing: /usr/bin/cmake --version stdout: cmake version 3.5.1 CMake suite maintained and supported by Kitware (kitware.com/cmake). cmake version found 3.5.1 child config.packages.cmake 0.021564 ================================================================================ TEST alternateConfigureLibrary from config.packages.googletest(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.googletest(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.googletest 0.002438 ================================================================================ TEST alternateConfigureLibrary from config.packages.unittestcpp(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.unittestcpp(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.unittestcpp 0.001651 ================================================================================ TEST alternateConfigureLibrary from config.packages.eigen(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.eigen(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.eigen 0.001600 ================================================================================ TEST alternateConfigureLibrary from config.packages.szlib(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.szlib(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.szlib 0.001701 ================================================================================ TEST checkDependencies from config.packages.zlib(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:843) TESTING: checkDependencies from config.packages.zlib(config/BuildSystem/config/package.py:843) ================================================================================ TEST configureLibrary from config.packages.zlib(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:868) TESTING: configureLibrary from config.packages.zlib(config/BuildSystem/config/package.py:868) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional zlib Looking for ZLIB at git.zlib, hg.zlib or a directory starting with ['zlib'] Could not locate an existing copy of ZLIB: ['mpich-3.3.2', 'git.ctetgen'] Downloading zlib =============================================================================== Trying to download http://www.zlib.net/zlib-1.2.11.tar.gz for ZLIB =============================================================================== Downloading http://www.zlib.net/zlib-1.2.11.tar.gz to /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/_d_zlib-1.2.11.tar.gz Extracting /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/_d_zlib-1.2.11.tar.gz Running Executable WITHOUT threads to time it out Executing: cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages; chmod -R a+r zlib-1.2.11;find zlib-1.2.11 -type d -name "*" -exec chmod a+rx {} \; Looking for ZLIB at git.zlib, hg.zlib or a directory starting with ['zlib'] Found a copy of ZLIB in zlib-1.2.11 ZLIB was just downloaded, forcing a rebuild because cannot determine if package has changed zlibDir = /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/zlib-1.2.11 installDir /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt =============================================================================== Building and installing zlib, this may take several minutes =============================================================================== Running Executable WITHOUT threads to time it out Executing: cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/zlib-1.2.11 && CC="/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc" CFLAGS="-fstack-protector -O3" prefix="/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt" ./configure && /usr/bin/make -j40 -l96.0 && /usr/bin/make install stdout: Checking for shared library support... Building shared library libz.so.1.2.11 with /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc. Checking for size_t... Yes. Checking for off64_t... Yes. Checking for fseeko... Yes. Checking for strerror... Yes. Checking for unistd.h... Yes. Checking for stdarg.h... Yes. Checking whether to use vs[n]printf() or s[n]printf()... using vs[n]printf(). Checking for vsnprintf() in stdio.h... Yes. Checking for return value of vsnprintf()... Yes. Checking for attribute(visibility) support... Yes. /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -I. -c -o example.o test/example.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o adler32.o adler32.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o crc32.o crc32.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o deflate.o deflate.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o infback.o infback.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o inffast.o inffast.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o inflate.o inflate.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o inftrees.o inftrees.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o trees.o trees.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o zutil.o zutil.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o compress.o compress.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o uncompr.o uncompr.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o gzclose.o gzclose.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o gzlib.o gzlib.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o gzread.o gzread.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o gzwrite.o gzwrite.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -I. -c -o minigzip.o test/minigzip.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DPIC -c -o objs/crc32.o crc32.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DPIC -c -o objs/adler32.o adler32.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -I. -D_FILE_OFFSET_BITS=64 -c -o example64.o test/example.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DPIC -c -o objs/inffast.o inffast.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DPIC -c -o objs/deflate.o deflate.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DPIC -c -o objs/inftrees.o inftrees.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -I. -D_FILE_OFFSET_BITS=64 -c -o minigzip64.o test/minigzip.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DPIC -c -o objs/infback.o infback.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DPIC -c -o objs/inflate.o inflate.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DPIC -c -o objs/trees.o trees.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DPIC -c -o objs/zutil.o zutil.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DPIC -c -o objs/compress.o compress.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DPIC -c -o objs/uncompr.o uncompr.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DPIC -c -o objs/gzlib.o gzlib.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DPIC -c -o objs/gzclose.o gzclose.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DPIC -c -o objs/gzread.o gzread.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DPIC -c -o objs/gzwrite.o gzwrite.c ar rc libz.a adler32.o crc32.o deflate.o infback.o inffast.o inflate.o inftrees.o trees.o zutil.o compress.o uncompr.o gzclose.o gzlib.o gzread.o gzwrite.o /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -o example example.o -L. libz.a /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -o minigzip minigzip.o -L. libz.a /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -o example64 example64.o -L. libz.a /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -o minigzip64 minigzip64.o -L. libz.a /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -shared -Wl,-soname,libz.so.1,--version-script,zlib.map -fstack-protector -O3 -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -o libz.so.1.2.11 adler32.lo crc32.lo deflate.lo infback.lo inffast.lo inflate.lo inftrees.lo trees.lo zutil.lo compress.lo uncompr.lo gzclose.lo gzlib.lo gzread.lo gzwrite.lo -lc rm -f libz.so libz.so.1 ln -s libz.so.1.2.11 libz.so ln -s libz.so.1.2.11 libz.so.1 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -o examplesh example.o -L. libz.so.1.2.11 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -o minigzipsh minigzip.o -L. libz.so.1.2.11 rm -f /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libz.a cp libz.a /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib chmod 644 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libz.a cp libz.so.1.2.11 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib chmod 755 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libz.so.1.2.11 rm -f /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/zlib.3 cp zlib.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3 chmod 644 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/zlib.3 rm -f /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/pkgconfig/zlib.pc cp zlib.pc /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/pkgconfig chmod 644 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/pkgconfig/zlib.pc rm -f /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include/zlib.h /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include/zconf.h cp zlib.h zconf.h /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include chmod 644 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include/zlib.h /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include/zconf.h ********Output of running make on ZLIB follows ******* Checking for shared library support... Building shared library libz.so.1.2.11 with /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc. Checking for size_t... Yes. Checking for off64_t... Yes. Checking for fseeko... Yes. Checking for strerror... Yes. Checking for unistd.h... Yes. Checking for stdarg.h... Yes. Checking whether to use vs[n]printf() or s[n]printf()... using vs[n]printf(). Checking for vsnprintf() in stdio.h... Yes. Checking for return value of vsnprintf()... Yes. Checking for attribute(visibility) support... Yes. /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -I. -c -o example.o test/example.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o adler32.o adler32.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o crc32.o crc32.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o deflate.o deflate.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o infback.o infback.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o inffast.o inffast.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o inflate.o inflate.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o inftrees.o inftrees.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o trees.o trees.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o zutil.o zutil.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o compress.o compress.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o uncompr.o uncompr.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o gzclose.o gzclose.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o gzlib.o gzlib.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o gzread.o gzread.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o gzwrite.o gzwrite.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -I. -c -o minigzip.o test/minigzip.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DPIC -c -o objs/crc32.o crc32.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DPIC -c -o objs/adler32.o adler32.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -I. -D_FILE_OFFSET_BITS=64 -c -o example64.o test/example.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DPIC -c -o objs/inffast.o inffast.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DPIC -c -o objs/deflate.o deflate.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DPIC -c -o objs/inftrees.o inftrees.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -I. -D_FILE_OFFSET_BITS=64 -c -o minigzip64.o test/minigzip.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DPIC -c -o objs/infback.o infback.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DPIC -c -o objs/inflate.o inflate.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DPIC -c -o objs/trees.o trees.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DPIC -c -o objs/zutil.o zutil.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DPIC -c -o objs/compress.o compress.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DPIC -c -o objs/uncompr.o uncompr.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DPIC -c -o objs/gzlib.o gzlib.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DPIC -c -o objs/gzclose.o gzclose.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DPIC -c -o objs/gzread.o gzread.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DPIC -c -o objs/gzwrite.o gzwrite.c ar rc libz.a adler32.o crc32.o deflate.o infback.o inffast.o inflate.o inftrees.o trees.o zutil.o compress.o uncompr.o gzclose.o gzlib.o gzread.o gzwrite.o /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -o example example.o -L. libz.a /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -o minigzip minigzip.o -L. libz.a /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -o example64 example64.o -L. libz.a /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -o minigzip64 minigzip64.o -L. libz.a /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -shared -Wl,-soname,libz.so.1,--version-script,zlib.map -fstack-protector -O3 -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -o libz.so.1.2.11 adler32.lo crc32.lo deflate.lo infback.lo inffast.lo inflate.lo inftrees.lo trees.lo zutil.lo compress.lo uncompr.lo gzclose.lo gzlib.lo gzread.lo gzwrite.lo -lc rm -f libz.so libz.so.1 ln -s libz.so.1.2.11 libz.so ln -s libz.so.1.2.11 libz.so.1 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -o examplesh example.o -L. libz.so.1.2.11 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -o minigzipsh minigzip.o -L. libz.so.1.2.11 rm -f /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libz.a cp libz.a /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib chmod 644 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libz.a cp libz.so.1.2.11 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib chmod 755 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libz.so.1.2.11 rm -f /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/zlib.3 cp zlib.3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3 chmod 644 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3/zlib.3 rm -f /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/pkgconfig/zlib.pc cp zlib.pc /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/pkgconfig chmod 644 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/pkgconfig/zlib.pc rm -f /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include/zlib.h /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include/zconf.h cp zlib.h zconf.h /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include chmod 644 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include/zlib.h /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include/zconf.h********End of Output of running make on ZLIB ******* Checking for library in Download ZLIB: ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libz.a'] Contents: ['share', 'lib', 'externalpackages', 'include', 'bin'] ================================================================================ TEST check from config.libraries(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [compress uncompress] in library ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libz.a'] [] Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.libraries/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.packages.valgrind -I/tmp/petsc-oluu3nld/config.packages.MPI -I/tmp/petsc-oluu3nld/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char compress(); static void _check_compress() { compress(); } char uncompress(); static void _check_uncompress() { uncompress(); } int main() { _check_compress(); _check_uncompress();; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -o /tmp/petsc-oluu3nld/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.o -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lz -lstdc++ -ldl Defined "HAVE_LIBZ" to "1" Checking for optional headers [] in Download ZLIB: ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] ================================================================================ TEST checkInclude from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] Found header files [] in ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] Checking for headers ['zlib.h'] in Download ZLIB: ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] ================================================================================ TEST checkInclude from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['zlib.h'] in ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] Checking include with compiler flags var CPPFLAGS ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -E -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.packages.MPI -I/tmp/petsc-oluu3nld/config.headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include /tmp/petsc-oluu3nld/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Found header files ['zlib.h'] in ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] ================================================================================ TEST checkVersion from config.packages.zlib(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:992) TESTING: checkVersion from config.packages.zlib(config/BuildSystem/config/package.py:992) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ================================================================================ TEST checkSharedLibrary from config.packages.zlib(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:926) TESTING: checkSharedLibrary from config.packages.zlib(config/BuildSystem/config/package.py:926) By default we don't care about checking if the library is shared child config.packages.zlib 2.985955 child config.packages.mathlib 0.000087 ================================================================================ TEST alternateConfigureLibrary from config.packages.tetgen(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.tetgen(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.tetgen 0.002318 ================================================================================ TEST alternateConfigureLibrary from config.packages.tchem(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.tchem(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.tchem 0.001587 ================================================================================ TEST alternateConfigureLibrary from config.packages.saws(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.saws(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.saws 0.001593 ================================================================================ TEST alternateConfigureLibrary from config.packages.libpng(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.libpng(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.libpng 0.001614 ================================================================================ TEST alternateConfigureLibrary from config.packages.combblas(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.combblas(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.combblas 0.001617 ================================================================================ TEST checkDependencies from config.packages.metis(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:843) TESTING: checkDependencies from config.packages.metis(config/BuildSystem/config/package.py:843) ================================================================================ TEST configureLibrary from config.packages.metis(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/packages/metis.py:49) TESTING: configureLibrary from config.packages.metis(config/BuildSystem/config/packages/metis.py:49) ================================================================================== Checking for a functional metis Looking for METIS at git.metis, hg.metis or a directory starting with ['petsc-pkg-metis'] Could not locate an existing copy of METIS: ['mpich-3.3.2', 'git.ctetgen', 'zlib-1.2.11'] Downloading metis =============================================================================== Trying to download git://https://bitbucket.org/petsc/pkg-metis.git for METIS =============================================================================== Running Executable WITHOUT threads to time it out Executing: git clone https://bitbucket.org/petsc/pkg-metis.git /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis Looking for METIS at git.metis, hg.metis or a directory starting with ['petsc-pkg-metis'] Found a copy of METIS in git.metis Running Executable WITHOUT threads to time it out Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Running Executable WITHOUT threads to time it out Executing: ['git', 'cat-file', '-e', 'v5.1.0-p8^{commit}'] Running Executable WITHOUT threads to time it out Executing: ['git', 'rev-parse', 'v5.1.0-p8'] stdout: ca7a59e6283f608d3e0d8a9d500838afb7f4339a Running Executable WITHOUT threads to time it out Executing: ['git', '-c', 'user.name=petsc-configure', '-c', 'user.email=petsc@configure', 'stash'] stdout: No local changes to save Running Executable WITHOUT threads to time it out Executing: ['git', 'clean', '-f', '-d', '-x'] Running Executable WITHOUT threads to time it out Executing: ['git', 'checkout', '-f', 'ca7a59e6283f608d3e0d8a9d500838afb7f4339a'] METIS was just downloaded, forcing a rebuild because cannot determine if package has changed =============================================================================== Configuring METIS with cmake, this may take several minutes =============================================================================== Running Executable WITHOUT threads to time it out Executing: /usr/bin/cmake .. -DCMAKE_INSTALL_PREFIX=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt -DCMAKE_VERBOSE_MAKEFILE=1 -DCMAKE_C_COMPILER="/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc" -DCMAKE_AR=/usr/bin/ar -DCMAKE_RANLIB=/usr/bin/ranlib -DCMAKE_C_FLAGS:STRING="-fstack-protector -O3" -DCMAKE_C_FLAGS_DEBUG:STRING="-fstack-protector -O3" -DCMAKE_C_FLAGS_RELEASE:STRING="-fstack-protector -O3" -DCMAKE_CXX_COMPILER="/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx" -DCMAKE_CXX_FLAGS:STRING="-fstack-protector -O3" -DCMAKE_CXX_FLAGS_DEBUG:STRING="-fstack-protector -O3" -DCMAKE_CXX_FLAGS_RELEASE:STRING="-fstack-protector -O3" -DCMAKE_Fortran_COMPILER="/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90" -DCMAKE_Fortran_FLAGS:STRING="-ffree-line-length-0 -O3" -DCMAKE_Fortran_FLAGS_DEBUG:STRING="-ffree-line-length-0 -O3" -DCMAKE_Fortran_FLAGS_RELEASE:STRING="-ffree-line-length-0 -O3" -DBUILD_SHARED_LIBS=on -DGKLIB_PATH=../GKlib -DGKRAND=1 -DSHARED=1 -DMATH_LIB="-lm" stdout: -- The C compiler identification is GNU 5.4.0 -- Check for working C compiler: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -- Check for working C compiler: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Looking for execinfo.h -- Looking for execinfo.h - found -- Looking for getline -- Looking for getline - found -- Configuring done -- Generating done -- Build files have been written to: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build =============================================================================== Compiling and installing METIS; this may take several minutes =============================================================================== Running Executable WITHOUT threads to time it out Executing: /usr/bin/make -j40 -l96.0 stdout: /usr/bin/cmake -H/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis -B/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/CMakeFiles /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory 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-DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/__/GKlib/seq.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib/seq.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/initpart.c.o -c 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/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/__/GKlib/fkvkselect.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib/fkvkselect.c [ 58%] Building C object libmetis/CMakeFiles/metis.dir/checkgraph.c.o cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/__/GKlib/fs.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib/fs.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/kwayfm.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/kwayfm.c [ 59%] Building C object libmetis/CMakeFiles/metis.dir/auxapi.c.o [ 61%] Building C object libmetis/CMakeFiles/metis.dir/kwayrefine.c.o [ 62%] Building C object libmetis/CMakeFiles/metis.dir/util.c.o cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/debug.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/debug.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/timing.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/timing.c [ 64%] Building C object libmetis/CMakeFiles/metis.dir/sfm.c.o cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/checkgraph.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/checkgraph.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/gklib.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/gklib.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/refine.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/refine.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/parmetis.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/parmetis.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/auxapi.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/auxapi.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/util.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/util.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/sfm.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/sfm.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/kwayrefine.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/kwayrefine.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/coarsen.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/coarsen.c [ 66%] Building C object libmetis/CMakeFiles/metis.dir/fm.c.o cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/fm.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/fm.c [ 69%] Building C object libmetis/CMakeFiles/metis.dir/frename.c.o [ 69%] Building C object libmetis/CMakeFiles/metis.dir/options.c.o cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/frename.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/frename.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/options.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/options.c [ 70%] Building C object libmetis/CMakeFiles/metis.dir/mesh.c.o cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/mesh.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/mesh.c [ 72%] Building C object libmetis/CMakeFiles/metis.dir/graph.c.o cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/graph.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/graph.c [ 74%] Building C object libmetis/CMakeFiles/metis.dir/fortran.c.o cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/fortran.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/fortran.c [ 75%] Building C object libmetis/CMakeFiles/metis.dir/mmd.c.o [ 77%] Building C object libmetis/CMakeFiles/metis.dir/compress.c.o cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/mmd.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/mmd.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/compress.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/compress.c [ 80%] Building C object libmetis/CMakeFiles/metis.dir/srefine.c.o [ 80%] Building C object libmetis/CMakeFiles/metis.dir/kmetis.c.o cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/kmetis.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/kmetis.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/srefine.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/srefine.c [ 82%] Building C object libmetis/CMakeFiles/metis.dir/minconn.c.o cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib 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-I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/ometis.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/ometis.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/contig.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/contig.c [ 87%] Building C object libmetis/CMakeFiles/metis.dir/mcutil.c.o cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/mcutil.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/mcutil.c [ 88%] Building C object libmetis/CMakeFiles/metis.dir/mincover.c.o cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/mincover.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/mincover.c [ 90%] Building C object libmetis/CMakeFiles/metis.dir/separator.c.o cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/separator.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/separator.c [ 91%] Building C object libmetis/CMakeFiles/metis.dir/bucketsort.c.o cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/bucketsort.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/bucketsort.c [ 93%] Building C object libmetis/CMakeFiles/metis.dir/balance.c.o cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/balance.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/balance.c [ 95%] Building C object libmetis/CMakeFiles/metis.dir/wspace.c.o cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/wspace.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/wspace.c [ 96%] Building C object libmetis/CMakeFiles/metis.dir/meshpart.c.o [ 98%] Building C object libmetis/CMakeFiles/metis.dir/pmetis.c.o cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/meshpart.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/meshpart.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/pmetis.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/pmetis.c [100%] Linking C shared library libmetis.so cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /usr/bin/cmake -E cmake_link_script CMakeFiles/metis.dir/link.txt --verbose=1 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fPIC -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC 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CMakeFiles/metis.dir/kmetis.c.o CMakeFiles/metis.dir/minconn.c.o CMakeFiles/metis.dir/contig.c.o CMakeFiles/metis.dir/ometis.c.o CMakeFiles/metis.dir/mcutil.c.o CMakeFiles/metis.dir/mincover.c.o CMakeFiles/metis.dir/separator.c.o CMakeFiles/metis.dir/bucketsort.c.o CMakeFiles/metis.dir/balance.c.o CMakeFiles/metis.dir/wspace.c.o CMakeFiles/metis.dir/meshpart.c.o CMakeFiles/metis.dir/pmetis.c.o -lm make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build' [100%] Built target metis make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build' /usr/bin/cmake -E cmake_progress_start /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/CMakeFiles 0 Running Executable WITHOUT threads to time it out Executing: /usr/bin/make install stdout: /usr/bin/cmake -H/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis 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/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis/CMakeFiles/metis.dir/DependInfo.cmake --color= make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build' /usr/bin/make -f libmetis/CMakeFiles/metis.dir/build.make libmetis/CMakeFiles/metis.dir/build make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build' make[2]: Nothing to be done for 'libmetis/CMakeFiles/metis.dir/build'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build' [100%] Built target metis make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build' /usr/bin/cmake -E cmake_progress_start /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "" -- Installing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include/metis.h -- Installing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include/gklib_tls.h -- Installing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmetis.so -- Installing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include/gklib_defs.h -- Installing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include/gklib_rename.h ********Output of running make on METIS follows ******* -- The C compiler identification is GNU 5.4.0 -- Check for working C compiler: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -- Check for working C compiler: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Looking for execinfo.h -- Looking for execinfo.h - found -- Looking for getline -- Looking for getline - found -- Configuring done -- Generating done -- Build files have been written to: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-buildCMake Warning: Manually-specified variables were not used by the project: CMAKE_CXX_COMPILER CMAKE_CXX_FLAGS CMAKE_CXX_FLAGS_DEBUG CMAKE_CXX_FLAGS_RELEASE CMAKE_C_FLAGS_DEBUG CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_COMPILER CMAKE_Fortran_FLAGS CMAKE_Fortran_FLAGS_DEBUG CMAKE_Fortran_FLAGS_RELEASE /usr/bin/cmake -H/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis -B/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/CMakeFiles /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build' /usr/bin/make -f libmetis/CMakeFiles/metis.dir/build.make libmetis/CMakeFiles/metis.dir/depend make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build' cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis/CMakeFiles/metis.dir/DependInfo.cmake --color= Scanning dependencies of target metis make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build' /usr/bin/make -f libmetis/CMakeFiles/metis.dir/build.make libmetis/CMakeFiles/metis.dir/build make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build' [ 3%] 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-Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/__/GKlib/timers.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib/timers.c [ 16%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/blas.c.o [ 19%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/pqueue.c.o [ 19%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/error.c.o cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector 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-I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/__/GKlib/seq.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib/seq.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 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/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/__/GKlib/fkvkselect.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib/fkvkselect.c [ 58%] Building C object libmetis/CMakeFiles/metis.dir/checkgraph.c.o cd 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/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/kwayfm.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/kwayfm.c [ 59%] Building C object libmetis/CMakeFiles/metis.dir/auxapi.c.o [ 61%] Building C object libmetis/CMakeFiles/metis.dir/kwayrefine.c.o [ 62%] Building C object libmetis/CMakeFiles/metis.dir/util.c.o cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/debug.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/debug.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && 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-Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/checkgraph.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/checkgraph.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/gklib.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/gklib.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/refine.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/refine.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/parmetis.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/parmetis.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/auxapi.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/auxapi.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/util.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/util.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/sfm.c.o -c 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/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/coarsen.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/coarsen.c [ 66%] Building C object libmetis/CMakeFiles/metis.dir/fm.c.o cd 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cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/frename.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/frename.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/options.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/options.c [ 70%] Building C object libmetis/CMakeFiles/metis.dir/mesh.c.o cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/mesh.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/mesh.c [ 72%] Building C object libmetis/CMakeFiles/metis.dir/graph.c.o cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/graph.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/graph.c [ 74%] Building C object libmetis/CMakeFiles/metis.dir/fortran.c.o cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS 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-Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/mmd.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/mmd.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib 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-I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/kmetis.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/kmetis.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/srefine.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/srefine.c [ 82%] Building C object libmetis/CMakeFiles/metis.dir/minconn.c.o cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib 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-I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/ometis.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/ometis.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/contig.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/contig.c [ 87%] Building C object libmetis/CMakeFiles/metis.dir/mcutil.c.o cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/mcutil.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/mcutil.c [ 88%] Building C object libmetis/CMakeFiles/metis.dir/mincover.c.o cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/mincover.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/mincover.c [ 90%] Building C object libmetis/CMakeFiles/metis.dir/separator.c.o cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/separator.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/separator.c [ 91%] Building C object libmetis/CMakeFiles/metis.dir/bucketsort.c.o cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/bucketsort.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/bucketsort.c [ 93%] Building C object libmetis/CMakeFiles/metis.dir/balance.c.o cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/balance.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/balance.c [ 95%] Building C object libmetis/CMakeFiles/metis.dir/wspace.c.o cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/wspace.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/wspace.c [ 96%] Building C object libmetis/CMakeFiles/metis.dir/meshpart.c.o [ 98%] Building C object libmetis/CMakeFiles/metis.dir/pmetis.c.o cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/meshpart.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/meshpart.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/. -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/include -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -fPIC -o CMakeFiles/metis.dir/pmetis.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/pmetis.c [100%] Linking C shared library libmetis.so cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis && /usr/bin/cmake -E cmake_link_script CMakeFiles/metis.dir/link.txt --verbose=1 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fPIC -fstack-protector -O3 -DLINUX -D_FILE_OFFSET_BITS=64 -std=c99 -fno-strict-aliasing -fPIC -Wall -pedantic -Wno-unused-variable -Wno-unknown-pragmas -DNDEBUG -DNDEBUG2 -DUSE_GKRAND -DHAVE_EXECINFO_H -DHAVE_GETLINE -shared -Wl,-soname,libmetis.so -o libmetis.so CMakeFiles/metis.dir/__/GKlib/tokenizer.c.o CMakeFiles/metis.dir/__/GKlib/b64.c.o CMakeFiles/metis.dir/__/GKlib/rw.c.o CMakeFiles/metis.dir/__/GKlib/memory.c.o CMakeFiles/metis.dir/__/GKlib/pdb.c.o CMakeFiles/metis.dir/__/GKlib/util.c.o CMakeFiles/metis.dir/__/GKlib/pqueue.c.o CMakeFiles/metis.dir/__/GKlib/timers.c.o CMakeFiles/metis.dir/__/GKlib/io.c.o CMakeFiles/metis.dir/__/GKlib/omp.c.o CMakeFiles/metis.dir/__/GKlib/graph.c.o CMakeFiles/metis.dir/__/GKlib/string.c.o CMakeFiles/metis.dir/__/GKlib/csr.c.o CMakeFiles/metis.dir/__/GKlib/error.c.o CMakeFiles/metis.dir/__/GKlib/mcore.c.o CMakeFiles/metis.dir/__/GKlib/gkregex.c.o CMakeFiles/metis.dir/__/GKlib/evaluate.c.o CMakeFiles/metis.dir/__/GKlib/random.c.o CMakeFiles/metis.dir/__/GKlib/sort.c.o CMakeFiles/metis.dir/__/GKlib/blas.c.o CMakeFiles/metis.dir/__/GKlib/seq.c.o CMakeFiles/metis.dir/__/GKlib/htable.c.o CMakeFiles/metis.dir/__/GKlib/itemsets.c.o CMakeFiles/metis.dir/__/GKlib/getopt.c.o CMakeFiles/metis.dir/__/GKlib/fkvkselect.c.o CMakeFiles/metis.dir/__/GKlib/fs.c.o CMakeFiles/metis.dir/stat.c.o CMakeFiles/metis.dir/timing.c.o CMakeFiles/metis.dir/kwayfm.c.o CMakeFiles/metis.dir/checkgraph.c.o CMakeFiles/metis.dir/gklib.c.o CMakeFiles/metis.dir/initpart.c.o CMakeFiles/metis.dir/debug.c.o CMakeFiles/metis.dir/refine.c.o CMakeFiles/metis.dir/util.c.o CMakeFiles/metis.dir/parmetis.c.o CMakeFiles/metis.dir/sfm.c.o CMakeFiles/metis.dir/auxapi.c.o CMakeFiles/metis.dir/kwayrefine.c.o CMakeFiles/metis.dir/coarsen.c.o CMakeFiles/metis.dir/fm.c.o CMakeFiles/metis.dir/options.c.o CMakeFiles/metis.dir/frename.c.o CMakeFiles/metis.dir/mesh.c.o CMakeFiles/metis.dir/graph.c.o CMakeFiles/metis.dir/fortran.c.o CMakeFiles/metis.dir/compress.c.o CMakeFiles/metis.dir/mmd.c.o CMakeFiles/metis.dir/srefine.c.o CMakeFiles/metis.dir/kmetis.c.o CMakeFiles/metis.dir/minconn.c.o CMakeFiles/metis.dir/contig.c.o CMakeFiles/metis.dir/ometis.c.o CMakeFiles/metis.dir/mcutil.c.o CMakeFiles/metis.dir/mincover.c.o CMakeFiles/metis.dir/separator.c.o CMakeFiles/metis.dir/bucketsort.c.o CMakeFiles/metis.dir/balance.c.o CMakeFiles/metis.dir/wspace.c.o CMakeFiles/metis.dir/meshpart.c.o CMakeFiles/metis.dir/pmetis.c.o -lm make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build' [100%] Built target metis make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build' /usr/bin/cmake -E cmake_progress_start /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/CMakeFiles 0In file included from /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib/GKlib.h:74:0, from /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib/pqueue.c:12: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib/pqueue.c: In function ‘gk_ipqCheckHeap’: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib/gk_mkpqueue.h:386:8: warning: variable ‘heap’ set but not used [-Wunused-but-set-variable] KVT *heap;\ ^ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib/pqueue.c:19:1: note: in expansion of macro ‘GK_MKPQUEUE’ GK_MKPQUEUE(gk_ipq, gk_ipq_t, gk_ikv_t, int, gk_idx_t, gk_ikvmalloc, INT_MAX, key_gt) ^ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib/pqueue.c: In function ‘gk_i32pqCheckHeap’: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib/gk_mkpqueue.h:386:8: warning: variable ‘heap’ set but not used [-Wunused-but-set-variable] KVT *heap;\ ^ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib/pqueue.c:20:1: note: in expansion of macro ‘GK_MKPQUEUE’ GK_MKPQUEUE(gk_i32pq, gk_i32pq_t, gk_i32kv_t, int32_t, gk_idx_t, gk_i32kvmalloc, INT32_MAX, key_gt) ^ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib/pqueue.c: In function ‘gk_i64pqCheckHeap’: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib/gk_mkpqueue.h:386:8: warning: variable ‘heap’ set but not used [-Wunused-but-set-variable] KVT *heap;\ ^ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib/pqueue.c:21:1: note: in expansion of macro ‘GK_MKPQUEUE’ GK_MKPQUEUE(gk_i64pq, gk_i64pq_t, gk_i64kv_t, int64_t, gk_idx_t, gk_i64kvmalloc, INT64_MAX, key_gt) ^ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib/pqueue.c: In function ‘gk_fpqCheckHeap’: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib/gk_mkpqueue.h:386:8: warning: variable ‘heap’ set but not used [-Wunused-but-set-variable] KVT *heap;\ ^ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib/pqueue.c:22:1: note: in expansion of macro ‘GK_MKPQUEUE’ GK_MKPQUEUE(gk_fpq, gk_fpq_t, gk_fkv_t, float, gk_idx_t, gk_fkvmalloc, FLT_MAX, key_gt) ^ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib/pqueue.c: In function ‘gk_dpqCheckHeap’: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib/gk_mkpqueue.h:386:8: warning: variable ‘heap’ set but not used [-Wunused-but-set-variable] KVT *heap;\ ^ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib/pqueue.c:23:1: note: in expansion of macro ‘GK_MKPQUEUE’ GK_MKPQUEUE(gk_dpq, gk_dpq_t, gk_dkv_t, double, gk_idx_t, gk_dkvmalloc, DBL_MAX, key_gt) ^ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib/pqueue.c: In function ‘gk_idxpqCheckHeap’: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib/gk_mkpqueue.h:386:8: warning: variable ‘heap’ set but not used [-Wunused-but-set-variable] KVT *heap;\ ^ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib/pqueue.c:24:1: note: in expansion of macro ‘GK_MKPQUEUE’ GK_MKPQUEUE(gk_idxpq, gk_idxpq_t, gk_idxkv_t, gk_idx_t, gk_idx_t, gk_idxkvmalloc, GK_IDX_MAX, key_gt) ^ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib/error.c: In function ‘gk_strerror’: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib/error.c:183:3: warning: implicit declaration of function ‘strerror_r’ [-Wimplicit-function-declaration] strerror_r(errnum, buf, 1024); ^ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/initpart.c: In function ‘libmetis__RandomBisection’: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/initpart.c:119:33: warning: variable ‘adjwgt’ set but not used [-Wunused-but-set-variable] idx_t *xadj, *vwgt, *adjncy, *adjwgt, *where; ^ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/initpart.c:119:24: warning: variable ‘adjncy’ set but not used [-Wunused-but-set-variable] idx_t *xadj, *vwgt, *adjncy, *adjwgt, *where; ^ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/initpart.c:119:10: warning: variable ‘xadj’ set but not used [-Wunused-but-set-variable] idx_t *xadj, *vwgt, *adjncy, *adjwgt, *where; ^ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/initpart.c: In function ‘libmetis__GrowBisection’: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/initpart.c:195:33: warning: variable ‘adjwgt’ set but not used [-Wunused-but-set-variable] idx_t *xadj, *vwgt, *adjncy, *adjwgt, *where; ^ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/initpart.c: In function ‘libmetis__GrowBisectionNode’: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/initpart.c:438:33: warning: variable ‘adjwgt’ set but not used [-Wunused-but-set-variable] idx_t *xadj, *vwgt, *adjncy, *adjwgt, *where, *bndind; ^ In file included from /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib/GKlib.h:74:0, from /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/metislib.h:17, from /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/gklib.c:12: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/gklib.c: In function ‘libmetis__ipqCheckHeap’: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib/gk_mkpqueue.h:386:8: warning: variable ‘heap’ set but not used [-Wunused-but-set-variable] KVT *heap;\ ^ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/gklib.c:33:1: note: in expansion of macro ‘GK_MKPQUEUE’ GK_MKPQUEUE(ipq, ipq_t, ikv_t, idx_t, idx_t, ikvmalloc, IDX_MAX, key_gt) ^ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/debug.c: In function ‘libmetis__CheckBnd’: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/debug.c:124:43: warning: variable ‘bndind’ set but not used [-Wunused-but-set-variable] idx_t *xadj, *adjncy, *where, *bndptr, *bndind; ^ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/gklib.c: In function ‘libmetis__rpqCheckHeap’: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/debug.c:124:34: warning: variable ‘bndptr’ set but not used [-Wunused-but-set-variable] idx_t *xadj, *adjncy, *where, *bndptr, *bndind; ^ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/GKlib/gk_mkpqueue.h:386:8: warning: variable ‘heap’ set but not used [-Wunused-but-set-variable] KVT *heap;\ ^ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/gklib.c:34:1: note: in expansion of macro ‘GK_MKPQUEUE’ GK_MKPQUEUE(rpq, rpq_t, rkv_t, real_t, idx_t, rkvmalloc, REAL_MAX, key_gt) ^ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/debug.c: In function ‘libmetis__CheckBnd2’: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/debug.c:161:43: warning: variable ‘bndind’ set but not used [-Wunused-but-set-variable] idx_t *xadj, *adjncy, *where, *bndptr, *bndind; ^ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/debug.c:161:34: warning: variable ‘bndptr’ set but not used [-Wunused-but-set-variable] idx_t *xadj, *adjncy, *where, *bndptr, *bndind; ^ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/debug.c: In function ‘libmetis__CheckNodeBnd’: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/debug.c:198:43: warning: variable ‘bndind’ set but not used [-Wunused-but-set-variable] idx_t *xadj, *adjncy, *where, *bndptr, *bndind; ^ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/debug.c:198:34: warning: variable ‘bndptr’ set but not used [-Wunused-but-set-variable] idx_t *xadj, *adjncy, *where, *bndptr, *bndind; ^ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/debug.c:198:17: warning: variable ‘adjncy’ set but not used [-Wunused-but-set-variable] idx_t *xadj, *adjncy, *where, *bndptr, *bndind; ^ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/debug.c:198:10: warning: variable ‘xadj’ set but not used [-Wunused-but-set-variable] idx_t *xadj, *adjncy, *where, *bndptr, *bndind; ^ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/debug.c: In function ‘libmetis__CheckRInfo’: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/debug.c:235:11: warning: variable ‘nbrs’ set but not used [-Wunused-but-set-variable] cnbr_t *nbrs; ^ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/debug.c: In function ‘libmetis__CheckNodePartitionParams’: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/debug.c:258:26: warning: variable ‘adjwgt’ set but not used [-Wunused-but-set-variable] idx_t *xadj, *adjncy, *adjwgt, *vwgt, *where; ^ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/debug.c: In function ‘libmetis__IsSeparable’: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/debug.c:312:17: warning: variable ‘adjncy’ set but not used [-Wunused-but-set-variable] idx_t *xadj, *adjncy, *where; ^ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/debug.c:311:22: warning: variable ‘other’ set but not used [-Wunused-but-set-variable] idx_t i, j, nvtxs, other; ^ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/coarsen.c: In function ‘libmetis__Match_RM’: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/coarsen.c:152:33: warning: variable ‘adjwgt’ set but not used [-Wunused-but-set-variable] idx_t *xadj, *vwgt, *adjncy, *adjwgt, *maxvwgt; ^ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/kwayrefine.c: In function ‘libmetis__ComputeKWayVolGains’: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/kwayrefine.c:565:34: warning: variable ‘adjwgt’ set but not used [-Wunused-but-set-variable] idx_t *xadj, *vsize, *adjncy, *adjwgt, *where, ^ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/kwayfm.c: In function ‘libmetis__Greedy_KWayCutOptimize’: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/kwayfm.c:69:74: warning: variable ‘adwgts’ set but not used [-Wunused-but-set-variable] idx_t maxndoms, *safetos=NULL, *nads=NULL, *doms=NULL, **adids=NULL, **adwgts=NULL; ^ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/kwayfm.c: In function ‘libmetis__Greedy_KWayVolOptimize’: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/kwayfm.c:382:74: warning: variable ‘adwgts’ set but not used [-Wunused-but-set-variable] idx_t maxndoms, *safetos=NULL, *nads=NULL, *doms=NULL, **adids=NULL, **adwgts=NULL; ^ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/kwayfm.c:380:33: warning: variable ‘bndptr’ set but not used [-Wunused-but-set-variable] idx_t *where, *pwgts, *perm, *bndptr, *bndind, *minwgt, *maxwgt, *itpwgts; ^ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/kwayfm.c: In function ‘libmetis__Greedy_McKWayCutOptimize’: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/kwayfm.c:696:74: warning: variable ‘adwgts’ set but not used [-Wunused-but-set-variable] idx_t maxndoms, *safetos=NULL, *nads=NULL, *doms=NULL, **adids=NULL, **adwgts=NULL; ^ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/kwayfm.c: In function ‘libmetis__Greedy_McKWayVolOptimize’: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/kwayfm.c:1038:74: warning: variable ‘adwgts’ set but not used [-Wunused-but-set-variable] idx_t maxndoms, *safetos=NULL, *nads=NULL, *doms=NULL, **adids=NULL, **adwgts=NULL; ^ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/kwayfm.c:1036:33: warning: variable ‘bndptr’ set but not used [-Wunused-but-set-variable] idx_t *where, *pwgts, *perm, *bndptr, *bndind, *minwgt, *maxwgt; ^ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/minconn.c: In function ‘libmetis__ComputeSubDomainGraph’: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/minconn.c:21:26: warning: variable ‘adjwgt’ set but not used [-Wunused-but-set-variable] idx_t *xadj, *adjncy, *adjwgt, *where; ^ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/minconn.c:21:17: warning: variable ‘adjncy’ set but not used [-Wunused-but-set-variable] idx_t *xadj, *adjncy, *adjwgt, *where; ^ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/minconn.c:21:10: warning: variable ‘xadj’ set but not used [-Wunused-but-set-variable] idx_t *xadj, *adjncy, *adjwgt, *where; ^ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/minconn.c: In function ‘libmetis__MoveGroupMinConnForCut’: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/minconn.c:480:29: warning: variable ‘nvtxs’ set but not used [-Wunused-but-set-variable] idx_t i, ii, j, jj, k, l, nvtxs, nbnd, from, me; ^ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/minconn.c: In function ‘libmetis__MoveGroupMinConnForVol’: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/minconn.c:564:29: warning: variable ‘nvtxs’ set but not used [-Wunused-but-set-variable] idx_t i, ii, j, jj, k, l, nvtxs, from, me, other, xgain, ewgt; ^ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/ometis.c: In function ‘libmetis__MlevelNestedDissection’: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/ometis.c:186:15: warning: variable ‘nvtxs’ set but not used [-Wunused-but-set-variable] idx_t i, j, nvtxs, nbnd; ^ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/ometis.c: In function ‘libmetis__SplitGraphOrder’: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/ometis.c:426:33: warning: variable ‘adjwgt’ set but not used [-Wunused-but-set-variable] idx_t *xadj, *vwgt, *adjncy, *adjwgt, *label, *where, *bndptr, *bndind; ^ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/ometis.c: In function ‘libmetis__SplitGraphOrderCC’: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/ometis.c:556:33: warning: variable ‘adjwgt’ set but not used [-Wunused-but-set-variable] idx_t *xadj, *vwgt, *adjncy, *adjwgt, *label, *where, *bndptr, *bndind; ^ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/contig.c: In function ‘libmetis__EliminateComponents’: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/contig.c:345:11: warning: variable ‘tpwgts’ set but not used [-Wunused-but-set-variable] real_t *tpwgts; ^ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/contig.c: In function ‘libmetis__MoveGroupContigForCut’: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/contig.c:534:34: warning: variable ‘nvtxs’ set but not used [-Wunused-but-set-variable] idx_t i, ii, iii, j, jj, k, l, nvtxs, nbnd, from, me; ^ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/contig.c: In function ‘libmetis__MoveGroupContigForVol’: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/contig.c:605:34: warning: variable ‘nvtxs’ set but not used [-Wunused-but-set-variable] idx_t i, ii, iii, j, jj, k, l, nvtxs, from, me, other, xgain; ^ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/separator.c: In function ‘libmetis__ConstructMinCoverSeparator’: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis/separator.c:73:27: warning: variable ‘bndptr’ set but not used [-Wunused-but-set-variable] idx_t *where, *bndind, *bndptr, *vmap, *ivmap, *cover; ^ /usr/bin/cmake -H/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis -B/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/CMakeFiles /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build' /usr/bin/make -f libmetis/CMakeFiles/metis.dir/build.make libmetis/CMakeFiles/metis.dir/depend make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build' cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/libmetis /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/libmetis/CMakeFiles/metis.dir/DependInfo.cmake --color= make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build' /usr/bin/make -f libmetis/CMakeFiles/metis.dir/build.make libmetis/CMakeFiles/metis.dir/build make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build' make[2]: Nothing to be done for 'libmetis/CMakeFiles/metis.dir/build'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build' [100%] Built target metis make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build' /usr/bin/cmake -E cmake_progress_start /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.metis/petsc-build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "" -- Installing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include/metis.h -- Installing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include/gklib_tls.h -- Installing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmetis.so -- Installing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include/gklib_defs.h -- Installing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include/gklib_rename.h********End of Output of running make on METIS ******* Checking for library in Download METIS: ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmetis.a'] Contents: ['share', 'lib', 'externalpackages', 'include', 'bin'] ================================================================================ TEST check from config.libraries(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [METIS_PartGraphKway] in library ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmetis.a'] ['libm.a'] Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.libraries/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.packages.valgrind -I/tmp/petsc-oluu3nld/config.packages.MPI -I/tmp/petsc-oluu3nld/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char METIS_PartGraphKway(); static void _check_METIS_PartGraphKway() { METIS_PartGraphKway(); } int main() { _check_METIS_PartGraphKway();; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -o /tmp/petsc-oluu3nld/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.o -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lmetis -lm -lstdc++ -ldl Defined "HAVE_LIBMETIS" to "1" Checking for optional headers [] in Download METIS: ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] ================================================================================ TEST checkInclude from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] Found header files [] in ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] Checking for headers ['metis.h'] in Download METIS: ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] ================================================================================ TEST checkInclude from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['metis.h'] in ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] Checking include with compiler flags var CPPFLAGS ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -E -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.packages.MPI -I/tmp/petsc-oluu3nld/config.headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include /tmp/petsc-oluu3nld/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Found header files ['metis.h'] in ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] All intermediate test results are stored in /tmp/petsc-oluu3nld/config.packages.metis Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.packages.metis/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.packages.valgrind -I/tmp/petsc-oluu3nld/config.packages.MPI -I/tmp/petsc-oluu3nld/config.packages.metis -I/tmp/petsc-oluu3nld/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include /tmp/petsc-oluu3nld/config.packages.metis/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-oluu3nld/config.packages.metis/conftest.c: In function ‘main’: /tmp/petsc-oluu3nld/config.packages.metis/conftest.c:8:7: warning: extra tokens at end of #endif directive [-Wendif-labels] #endif; ^ Source: #include "confdefs.h" #include "conffix.h" #include "metis.h" int main() { #if (IDXTYPEWIDTH != 32) #error incompatible IDXTYPEWIDTH #endif; return 0; } ================================================================================ TEST checkVersion from config.packages.metis(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:992) TESTING: checkVersion from config.packages.metis(config/BuildSystem/config/package.py:992) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "metis.h" ;petscpkgver(METIS_VER_MAJOR.METIS_VER_MINOR.METIS_VER_SUBMINOR); Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -E -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.packages.metis -I/tmp/petsc-oluu3nld/config.packages.MPI -I/tmp/petsc-oluu3nld/config.headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include /tmp/petsc-oluu3nld/config.packages.metis/conftest.c For metis need <= 5.1.0 <= ================================================================================ TEST checkSharedLibrary from config.packages.metis(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:926) TESTING: checkSharedLibrary from config.packages.metis(config/BuildSystem/config/package.py:926) By default we don't care about checking if the library is shared child config.packages.metis 4.924960 ================================================================================ TEST alternateConfigureLibrary from config.packages.pragmatic(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.pragmatic(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.pragmatic 0.002314 ================================================================================ TEST checkDependencies from config.packages.parmetis(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:843) TESTING: checkDependencies from config.packages.parmetis(config/BuildSystem/config/package.py:843) ================================================================================ TEST configureLibrary from config.packages.parmetis(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/packages/parmetis.py:41) TESTING: configureLibrary from config.packages.parmetis(config/BuildSystem/config/packages/parmetis.py:41) ================================================================================== Checking for a functional parmetis Looking for PARMETIS at git.parmetis, hg.parmetis or a directory starting with ['petsc-pkg-parmetis'] Could not locate an existing copy of PARMETIS: ['mpich-3.3.2', 'git.ctetgen', 'zlib-1.2.11', 'git.metis'] Downloading parmetis =============================================================================== Trying to download git://https://bitbucket.org/petsc/pkg-parmetis.git for PARMETIS =============================================================================== Running Executable WITHOUT threads to time it out Executing: git clone https://bitbucket.org/petsc/pkg-parmetis.git /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis Looking for PARMETIS at git.parmetis, hg.parmetis or a directory starting with ['petsc-pkg-parmetis'] Found a copy of PARMETIS in git.parmetis Running Executable WITHOUT threads to time it out Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Running Executable WITHOUT threads to time it out Executing: ['git', 'cat-file', '-e', 'v4.0.3-p6^{commit}'] Running Executable WITHOUT threads to time it out Executing: ['git', 'rev-parse', 'v4.0.3-p6'] stdout: 475d8facbb324527c205f1f78a7c90bd160bddcd Running Executable WITHOUT threads to time it out Executing: ['git', '-c', 'user.name=petsc-configure', '-c', 'user.email=petsc@configure', 'stash'] stdout: No local changes to save Running Executable WITHOUT threads to time it out Executing: ['git', 'clean', '-f', '-d', '-x'] Running Executable WITHOUT threads to time it out Executing: ['git', 'checkout', '-f', '475d8facbb324527c205f1f78a7c90bd160bddcd'] PARMETIS was just downloaded, forcing a rebuild because cannot determine if package has changed =============================================================================== Configuring PARMETIS with cmake, this may take several minutes =============================================================================== Running Executable WITHOUT threads to time it out Executing: /usr/bin/cmake .. -DCMAKE_INSTALL_PREFIX=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt -DCMAKE_VERBOSE_MAKEFILE=1 -DCMAKE_C_COMPILER="/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc" -DCMAKE_AR=/usr/bin/ar -DCMAKE_RANLIB=/usr/bin/ranlib -DCMAKE_C_FLAGS:STRING="-fstack-protector -O3" -DCMAKE_C_FLAGS_DEBUG:STRING="-fstack-protector -O3" -DCMAKE_C_FLAGS_RELEASE:STRING="-fstack-protector -O3" -DCMAKE_CXX_COMPILER="/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx" -DCMAKE_CXX_FLAGS:STRING="-fstack-protector -O3" -DCMAKE_CXX_FLAGS_DEBUG:STRING="-fstack-protector -O3" -DCMAKE_CXX_FLAGS_RELEASE:STRING="-fstack-protector -O3" -DCMAKE_Fortran_COMPILER="/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90" -DCMAKE_Fortran_FLAGS:STRING="-ffree-line-length-0 -O3" -DCMAKE_Fortran_FLAGS_DEBUG:STRING="-ffree-line-length-0 -O3" -DCMAKE_Fortran_FLAGS_RELEASE:STRING="-ffree-line-length-0 -O3" -DBUILD_SHARED_LIBS=on -DGKLIB_PATH=../headers -DMETIS_PATH=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt -DMPI_INCLUDE_PATH="/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include" -DSHARED=1 -DCMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=ON stdout: -- The C compiler identification is GNU 5.4.0 -- Check for working C compiler: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -- Check for working C compiler: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Configuring done -- Generating done -- Build files have been written to: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build =============================================================================== Compiling and installing PARMETIS; this may take several minutes =============================================================================== Running Executable WITHOUT threads to time it out Executing: /usr/bin/make -j40 -l96.0 stdout: /usr/bin/cmake -H/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis -B/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/CMakeFiles /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build' /usr/bin/make -f libparmetis/CMakeFiles/parmetis.dir/build.make libparmetis/CMakeFiles/parmetis.dir/depend make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build' cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis/CMakeFiles/parmetis.dir/DependInfo.cmake --color= Scanning dependencies of target parmetis make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build' /usr/bin/make -f libparmetis/CMakeFiles/parmetis.dir/build.make libparmetis/CMakeFiles/parmetis.dir/build make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build' [ 2%] Building C object libparmetis/CMakeFiles/parmetis.dir/node_refine.c.o [ 4%] Building C object libparmetis/CMakeFiles/parmetis.dir/util.c.o [ 7%] Building C object libparmetis/CMakeFiles/parmetis.dir/wave.c.o cd 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-Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/ametis.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/ametis.c [ 60%] Building C object libparmetis/CMakeFiles/parmetis.dir/weird.c.o [ 60%] Building C object libparmetis/CMakeFiles/parmetis.dir/csrmatch.c.o [ 63%] Building C object libparmetis/CMakeFiles/parmetis.dir/kmetis.c.o cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/xyzpart.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/xyzpart.c [ 65%] Building C object libparmetis/CMakeFiles/parmetis.dir/msetup.c.o cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers 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/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/kwayrefine.c [ 87%] Building C object libparmetis/CMakeFiles/parmetis.dir/rmetis.c.o cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/mdiffusion.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/mdiffusion.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/ComputeVertexSeparator.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/ComputeVertexSeparator.c [ 92%] Building C object libparmetis/CMakeFiles/parmetis.dir/initmsection.c.o [ 95%] Building C object libparmetis/CMakeFiles/parmetis.dir/balancemylink.c.o cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/renumber.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/renumber.c [ 95%] Building C object libparmetis/CMakeFiles/parmetis.dir/wspace.c.o cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/frename.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/frename.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/mesh.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/mesh.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/serial.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/serial.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/move.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/move.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/graph.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/graph.c [ 97%] Building C object libparmetis/CMakeFiles/parmetis.dir/mmetis.c.o cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/akwayfm.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/akwayfm.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/msetup.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/msetup.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/initbalance.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/initbalance.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/kmetis.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/kmetis.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/gkmpi.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/gkmpi.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/csrmatch.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/csrmatch.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/match.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/match.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/selectq.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/selectq.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/ometis.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/ometis.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/balancemylink.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/balancemylink.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/gkmetis.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/gkmetis.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/rmetis.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/rmetis.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/initmsection.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/initmsection.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/wspace.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/wspace.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/mmetis.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/mmetis.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/weird.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/weird.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/timer.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/timer.c [100%] Linking C shared library libparmetis.so cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /usr/bin/cmake -E cmake_link_script CMakeFiles/parmetis.dir/link.txt --verbose=1 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fPIC -fstack-protector -O3 -shared -Wl,-soname,libparmetis.so -o libparmetis.so CMakeFiles/parmetis.dir/remap.c.o CMakeFiles/parmetis.dir/wave.c.o CMakeFiles/parmetis.dir/node_refine.c.o CMakeFiles/parmetis.dir/stat.c.o CMakeFiles/parmetis.dir/comm.c.o CMakeFiles/parmetis.dir/xyzpart.c.o CMakeFiles/parmetis.dir/initpart.c.o CMakeFiles/parmetis.dir/debug.c.o CMakeFiles/parmetis.dir/diffutil.c.o CMakeFiles/parmetis.dir/pspases.c.o CMakeFiles/parmetis.dir/util.c.o CMakeFiles/parmetis.dir/redomylink.c.o CMakeFiles/parmetis.dir/ctrl.c.o CMakeFiles/parmetis.dir/kwayrefine.c.o CMakeFiles/parmetis.dir/mdiffusion.c.o CMakeFiles/parmetis.dir/ametis.c.o CMakeFiles/parmetis.dir/ComputeVertexSeparator.c.o CMakeFiles/parmetis.dir/renumber.c.o CMakeFiles/parmetis.dir/frename.c.o CMakeFiles/parmetis.dir/mesh.c.o CMakeFiles/parmetis.dir/serial.c.o CMakeFiles/parmetis.dir/move.c.o CMakeFiles/parmetis.dir/graph.c.o CMakeFiles/parmetis.dir/akwayfm.c.o CMakeFiles/parmetis.dir/msetup.c.o CMakeFiles/parmetis.dir/initbalance.c.o CMakeFiles/parmetis.dir/kmetis.c.o CMakeFiles/parmetis.dir/gkmpi.c.o CMakeFiles/parmetis.dir/csrmatch.c.o CMakeFiles/parmetis.dir/match.c.o CMakeFiles/parmetis.dir/selectq.c.o CMakeFiles/parmetis.dir/ometis.c.o CMakeFiles/parmetis.dir/balancemylink.c.o CMakeFiles/parmetis.dir/gkmetis.c.o CMakeFiles/parmetis.dir/rmetis.c.o CMakeFiles/parmetis.dir/initmsection.c.o CMakeFiles/parmetis.dir/wspace.c.o CMakeFiles/parmetis.dir/mmetis.c.o CMakeFiles/parmetis.dir/weird.c.o CMakeFiles/parmetis.dir/timer.c.o -lmetis make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build' [100%] Built target parmetis make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build' /usr/bin/cmake -E cmake_progress_start /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/CMakeFiles 0 Running Executable WITHOUT threads to time it out Executing: /usr/bin/make install stdout: /usr/bin/cmake -H/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis -B/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/CMakeFiles /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build' /usr/bin/make -f libparmetis/CMakeFiles/parmetis.dir/build.make libparmetis/CMakeFiles/parmetis.dir/depend make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build' cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis/CMakeFiles/parmetis.dir/DependInfo.cmake --color= make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build' /usr/bin/make -f libparmetis/CMakeFiles/parmetis.dir/build.make libparmetis/CMakeFiles/parmetis.dir/build make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build' make[2]: Nothing to be done for 'libparmetis/CMakeFiles/parmetis.dir/build'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build' [100%] Built target parmetis make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build' /usr/bin/cmake -E cmake_progress_start /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "" -- Installing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include/parmetis.h -- Installing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libparmetis.so ********Output of running make on PARMETIS follows ******* -- The C compiler identification is GNU 5.4.0 -- Check for working C compiler: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -- Check for working C compiler: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Configuring done -- Generating done -- Build files have been written to: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-buildCMake Warning: Manually-specified variables were not used by the project: CMAKE_CXX_COMPILER CMAKE_CXX_FLAGS CMAKE_CXX_FLAGS_DEBUG CMAKE_CXX_FLAGS_RELEASE CMAKE_C_FLAGS_DEBUG CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_COMPILER CMAKE_Fortran_FLAGS CMAKE_Fortran_FLAGS_DEBUG CMAKE_Fortran_FLAGS_RELEASE /usr/bin/cmake -H/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis -B/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/CMakeFiles /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build' /usr/bin/make -f libparmetis/CMakeFiles/parmetis.dir/build.make libparmetis/CMakeFiles/parmetis.dir/depend make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build' cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis/CMakeFiles/parmetis.dir/DependInfo.cmake --color= Scanning dependencies of target parmetis make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build' /usr/bin/make -f libparmetis/CMakeFiles/parmetis.dir/build.make libparmetis/CMakeFiles/parmetis.dir/build make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build' [ 2%] Building C object libparmetis/CMakeFiles/parmetis.dir/node_refine.c.o [ 4%] Building C object libparmetis/CMakeFiles/parmetis.dir/util.c.o [ 7%] Building C object libparmetis/CMakeFiles/parmetis.dir/wave.c.o cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/node_refine.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/node_refine.c [ 9%] Building C object libparmetis/CMakeFiles/parmetis.dir/remap.c.o [ 12%] Building C object libparmetis/CMakeFiles/parmetis.dir/stat.c.o [ 14%] Building C object libparmetis/CMakeFiles/parmetis.dir/redomylink.c.o cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/util.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/util.c [ 19%] Building C object libparmetis/CMakeFiles/parmetis.dir/serial.c.o [ 19%] Building C object libparmetis/CMakeFiles/parmetis.dir/comm.c.o [ 21%] Building C object libparmetis/CMakeFiles/parmetis.dir/initpart.c.o cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/wave.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/wave.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/redomylink.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/redomylink.c [ 26%] Building C object libparmetis/CMakeFiles/parmetis.dir/diffutil.c.o [ 26%] Building C object libparmetis/CMakeFiles/parmetis.dir/ametis.c.o cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/remap.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/remap.c [ 29%] Building C object libparmetis/CMakeFiles/parmetis.dir/ctrl.c.o [ 41%] Building C object libparmetis/CMakeFiles/parmetis.dir/ComputeVertexSeparator.c.o [ 41%] Building C object libparmetis/CMakeFiles/parmetis.dir/debug.c.o [ 41%] Building C object libparmetis/CMakeFiles/parmetis.dir/mdiffusion.c.o [ 41%] Building C object libparmetis/CMakeFiles/parmetis.dir/kwayrefine.c.o [ 41%] Building C object libparmetis/CMakeFiles/parmetis.dir/frename.c.o cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/stat.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/stat.c [ 43%] Building C object libparmetis/CMakeFiles/parmetis.dir/xyzpart.c.o cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/comm.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/comm.c [ 48%] Building C object libparmetis/CMakeFiles/parmetis.dir/akwayfm.c.o [ 48%] Building C object libparmetis/CMakeFiles/parmetis.dir/pspases.c.o [ 51%] Building C object libparmetis/CMakeFiles/parmetis.dir/move.c.o [ 56%] Building C object libparmetis/CMakeFiles/parmetis.dir/mesh.c.o [ 56%] Building C object libparmetis/CMakeFiles/parmetis.dir/renumber.c.o cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/initpart.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/initpart.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && 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-I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/ametis.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/ametis.c [ 60%] Building C object libparmetis/CMakeFiles/parmetis.dir/weird.c.o [ 60%] Building C object libparmetis/CMakeFiles/parmetis.dir/csrmatch.c.o [ 63%] Building C object libparmetis/CMakeFiles/parmetis.dir/kmetis.c.o cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/xyzpart.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/xyzpart.c [ 65%] Building C object libparmetis/CMakeFiles/parmetis.dir/msetup.c.o cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/debug.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/debug.c [ 68%] Building C object libparmetis/CMakeFiles/parmetis.dir/graph.c.o [ 75%] Building C object libparmetis/CMakeFiles/parmetis.dir/ometis.c.o [ 75%] Building C object libparmetis/CMakeFiles/parmetis.dir/initbalance.c.o [ 75%] Building C object libparmetis/CMakeFiles/parmetis.dir/gkmpi.c.o cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/pspases.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/pspases.c [ 78%] Building C object libparmetis/CMakeFiles/parmetis.dir/match.c.o cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/ctrl.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/ctrl.c [ 80%] Building C object libparmetis/CMakeFiles/parmetis.dir/gkmetis.c.o [ 85%] Building C object libparmetis/CMakeFiles/parmetis.dir/selectq.c.o [ 85%] Building C object libparmetis/CMakeFiles/parmetis.dir/timer.c.o cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/kwayrefine.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/kwayrefine.c [ 87%] Building C object libparmetis/CMakeFiles/parmetis.dir/rmetis.c.o cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/mdiffusion.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/mdiffusion.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/ComputeVertexSeparator.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/ComputeVertexSeparator.c [ 92%] Building C object libparmetis/CMakeFiles/parmetis.dir/initmsection.c.o [ 95%] Building C object libparmetis/CMakeFiles/parmetis.dir/balancemylink.c.o cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/renumber.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/renumber.c [ 95%] Building C object libparmetis/CMakeFiles/parmetis.dir/wspace.c.o cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/frename.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/frename.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/mesh.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/mesh.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/serial.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/serial.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/move.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/move.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/graph.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/graph.c [ 97%] Building C object libparmetis/CMakeFiles/parmetis.dir/mmetis.c.o cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/akwayfm.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/akwayfm.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/msetup.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/msetup.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/initbalance.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/initbalance.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/kmetis.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/kmetis.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/gkmpi.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/gkmpi.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/csrmatch.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/csrmatch.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/match.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/match.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/selectq.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/selectq.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/ometis.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/ometis.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/balancemylink.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/balancemylink.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/gkmetis.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/gkmetis.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/rmetis.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/rmetis.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/initmsection.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/initmsection.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/wspace.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/wspace.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/mmetis.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/mmetis.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/weird.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/weird.c cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -Dparmetis_EXPORTS -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/. -fstack-protector -O3 -fPIC -o CMakeFiles/parmetis.dir/timer.c.o -c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis/timer.c [100%] Linking C shared library libparmetis.so cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis && /usr/bin/cmake -E cmake_link_script CMakeFiles/parmetis.dir/link.txt --verbose=1 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fPIC -fstack-protector -O3 -shared -Wl,-soname,libparmetis.so -o libparmetis.so CMakeFiles/parmetis.dir/remap.c.o CMakeFiles/parmetis.dir/wave.c.o CMakeFiles/parmetis.dir/node_refine.c.o CMakeFiles/parmetis.dir/stat.c.o CMakeFiles/parmetis.dir/comm.c.o CMakeFiles/parmetis.dir/xyzpart.c.o CMakeFiles/parmetis.dir/initpart.c.o CMakeFiles/parmetis.dir/debug.c.o CMakeFiles/parmetis.dir/diffutil.c.o CMakeFiles/parmetis.dir/pspases.c.o CMakeFiles/parmetis.dir/util.c.o CMakeFiles/parmetis.dir/redomylink.c.o CMakeFiles/parmetis.dir/ctrl.c.o CMakeFiles/parmetis.dir/kwayrefine.c.o CMakeFiles/parmetis.dir/mdiffusion.c.o CMakeFiles/parmetis.dir/ametis.c.o CMakeFiles/parmetis.dir/ComputeVertexSeparator.c.o CMakeFiles/parmetis.dir/renumber.c.o CMakeFiles/parmetis.dir/frename.c.o CMakeFiles/parmetis.dir/mesh.c.o CMakeFiles/parmetis.dir/serial.c.o CMakeFiles/parmetis.dir/move.c.o CMakeFiles/parmetis.dir/graph.c.o CMakeFiles/parmetis.dir/akwayfm.c.o CMakeFiles/parmetis.dir/msetup.c.o CMakeFiles/parmetis.dir/initbalance.c.o CMakeFiles/parmetis.dir/kmetis.c.o CMakeFiles/parmetis.dir/gkmpi.c.o CMakeFiles/parmetis.dir/csrmatch.c.o CMakeFiles/parmetis.dir/match.c.o CMakeFiles/parmetis.dir/selectq.c.o CMakeFiles/parmetis.dir/ometis.c.o CMakeFiles/parmetis.dir/balancemylink.c.o CMakeFiles/parmetis.dir/gkmetis.c.o CMakeFiles/parmetis.dir/rmetis.c.o CMakeFiles/parmetis.dir/initmsection.c.o CMakeFiles/parmetis.dir/wspace.c.o CMakeFiles/parmetis.dir/mmetis.c.o CMakeFiles/parmetis.dir/weird.c.o CMakeFiles/parmetis.dir/timer.c.o -lmetis make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build' [100%] Built target parmetis make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build' /usr/bin/cmake -E cmake_progress_start /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/CMakeFiles 0/usr/bin/cmake -H/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis -B/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/CMakeFiles /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build' /usr/bin/make -f libparmetis/CMakeFiles/parmetis.dir/build.make libparmetis/CMakeFiles/parmetis.dir/depend make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build' cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/libparmetis /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/libparmetis/CMakeFiles/parmetis.dir/DependInfo.cmake --color= make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build' /usr/bin/make -f libparmetis/CMakeFiles/parmetis.dir/build.make libparmetis/CMakeFiles/parmetis.dir/build make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build' make[2]: Nothing to be done for 'libparmetis/CMakeFiles/parmetis.dir/build'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build' [100%] Built target parmetis make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build' /usr/bin/cmake -E cmake_progress_start /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.parmetis/petsc-build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "" -- Installing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include/parmetis.h -- Installing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libparmetis.so********End of Output of running make on PARMETIS ******* Checking for library in Download PARMETIS: ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libparmetis.a'] Contents: ['share', 'lib', 'externalpackages', 'include', 'bin'] ================================================================================ TEST check from config.libraries(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [ParMETIS_V3_PartKway] in library ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libparmetis.a'] ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmetis.a', 'libm.a'] Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.libraries/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.packages.valgrind -I/tmp/petsc-oluu3nld/config.packages.MPI -I/tmp/petsc-oluu3nld/config.packages.metis -I/tmp/petsc-oluu3nld/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ParMETIS_V3_PartKway(); static void _check_ParMETIS_V3_PartKway() { ParMETIS_V3_PartKway(); } int main() { _check_ParMETIS_V3_PartKway();; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -o /tmp/petsc-oluu3nld/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.o -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lparmetis -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lmetis -lm -lstdc++ -ldl Defined "HAVE_LIBPARMETIS" to "1" Checking for optional headers [] in Download PARMETIS: ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] ================================================================================ TEST checkInclude from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] Found header files [] in ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] Checking for headers ['parmetis.h'] in Download PARMETIS: ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] ================================================================================ TEST checkInclude from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['parmetis.h'] in ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] Checking include with compiler flags var CPPFLAGS ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include', '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include', '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -E -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.packages.metis -I/tmp/petsc-oluu3nld/config.packages.MPI -I/tmp/petsc-oluu3nld/config.headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include /tmp/petsc-oluu3nld/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Found header files ['parmetis.h'] in ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] Checking for functions [ParMETIS_ComputeVertexSeparator] in library ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libparmetis.a'] ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmetis.a', 'libm.a'] Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.libraries/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.packages.valgrind -I/tmp/petsc-oluu3nld/config.packages.MPI -I/tmp/petsc-oluu3nld/config.packages.metis -I/tmp/petsc-oluu3nld/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ParMETIS_ComputeVertexSeparator(); static void _check_ParMETIS_ComputeVertexSeparator() { ParMETIS_ComputeVertexSeparator(); } int main() { _check_ParMETIS_ComputeVertexSeparator();; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -o /tmp/petsc-oluu3nld/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.o -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lparmetis -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lmetis -lm -lstdc++ -ldl Defined "HAVE_LIBPARMETIS" to "1" ================================================================================ TEST checkVersion from config.packages.parmetis(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:992) TESTING: checkVersion from config.packages.parmetis(config/BuildSystem/config/package.py:992) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version All intermediate test results are stored in /tmp/petsc-oluu3nld/config.packages.parmetis Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "parmetis.h" ;petscpkgver(PARMETIS_MAJOR_VERSION.PARMETIS_MINOR_VERSION.PARMETIS_SUBMINOR_VERSION); Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -E -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.packages.metis -I/tmp/petsc-oluu3nld/config.packages.MPI -I/tmp/petsc-oluu3nld/config.packages.parmetis -I/tmp/petsc-oluu3nld/config.headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include /tmp/petsc-oluu3nld/config.packages.parmetis/conftest.c For parmetis need <= 4.0.3 <= ================================================================================ TEST checkSharedLibrary from config.packages.parmetis(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:926) TESTING: checkSharedLibrary from config.packages.parmetis(config/BuildSystem/config/package.py:926) By default we don't care about checking if the library is shared child config.packages.parmetis 4.314661 ================================================================================ TEST checkDependencies from config.packages.Chaco(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:843) TESTING: checkDependencies from config.packages.Chaco(config/BuildSystem/config/package.py:843) ================================================================================ TEST configureLibrary from config.packages.Chaco(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/packages/Chaco.py:54) TESTING: configureLibrary from config.packages.Chaco(config/BuildSystem/config/packages/Chaco.py:54) ================================================================================== Checking for a functional Chaco ************************************************************************************************** Please register to use Chaco at http://www.cs.sandia.gov/web1400/1400_download.html ************************************************************************************************** Looking for CHACO at git.chaco, hg.chaco or a directory starting with ['Chaco'] Could not locate an existing copy of CHACO: ['git.parmetis', 'mpich-3.3.2', 'git.ctetgen', 'zlib-1.2.11', 'git.metis'] Downloading Chaco =============================================================================== Trying to download http://ftp.mcs.anl.gov/pub/petsc/externalpackages/Chaco-2.2-p2.tar.gz for CHACO =============================================================================== Downloading http://ftp.mcs.anl.gov/pub/petsc/externalpackages/Chaco-2.2-p2.tar.gz to /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/_d_Chaco-2.2-p2.tar.gz Extracting /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/_d_Chaco-2.2-p2.tar.gz Running Executable WITHOUT threads to time it out Executing: cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages; chmod -R a+r Chaco-2.2-p2;find Chaco-2.2-p2 -type d -name "*" -exec chmod a+rx {} \; Looking for CHACO at git.chaco, hg.chaco or a directory starting with ['Chaco'] Found a copy of CHACO in Chaco-2.2-p2 chacoDir = /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/Chaco-2.2-p2 installDir /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt CHACO was just downloaded, forcing a rebuild because cannot determine if package has changed =============================================================================== Compiling and installing chaco; this may take several minutes =============================================================================== Running Executable WITHOUT threads to time it out Executing: make clean Executing: make Executing: /usr/bin/ar cr libchaco.a `ls */*.o |grep -v main/main.o` Executing: /usr/bin/ranlib libchaco.a Executing: mkdir -p /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib Executing: cp libchaco.a /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib stdout: rm -f */*.o ../exec/core /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o main/user_params.o main/user_params.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o main/interface.o main/interface.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o main/main.o main/main.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o submain/balance.o submain/balance.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o submain/divide.o submain/divide.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o submain/submain.o submain/submain.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o input/input_assign.o input/input_assign.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o input/check_input.o input/check_input.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o input/input.o input/input.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o input/input_geom.o input/input_geom.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o input/input_graph.o input/input_graph.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o input/read_params.o input/read_params.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o input/reflect_input.o input/reflect_input.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o input/read_val.o input/read_val.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o graph/check_graph.o graph/check_graph.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o graph/free_graph.o graph/free_graph.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o graph/reformat.o graph/reformat.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o graph/subgraph.o graph/subgraph.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o graph/graph_out.o graph/graph_out.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o inertial/eigenvec2.o inertial/eigenvec2.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o inertial/eigenvec3.o inertial/eigenvec3.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o inertial/inertial.o inertial/inertial.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o inertial/inertial1d.o inertial/inertial1d.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o inertial/inertial2d.o inertial/inertial2d.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o inertial/inertial3d.o inertial/inertial3d.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o inertial/make_subgeom.o inertial/make_subgeom.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o klspiff/buckets.o klspiff/buckets.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o klspiff/buckets_bi.o klspiff/buckets_bi.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o klspiff/buckets1.o klspiff/buckets1.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o klspiff/bilistops.o klspiff/bilistops.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o klspiff/coarsen_kl.o klspiff/coarsen_kl.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o klspiff/count_weights.o klspiff/count_weights.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o klspiff/compress_ewgts.o klspiff/compress_ewgts.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o klspiff/kl_init.o klspiff/kl_init.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o klspiff/kl_output.o klspiff/kl_output.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o klspiff/klspiff.o klspiff/klspiff.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o klspiff/make_bndy_list.o klspiff/make_bndy_list.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o klspiff/make_kl_list.o klspiff/make_kl_list.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o klspiff/nway_kl.o klspiff/nway_kl.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o klvspiff/bpm_improve.o klvspiff/bpm_improve.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o klvspiff/bucketsv.o klvspiff/bucketsv.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o klvspiff/clear_dvals.o klvspiff/clear_dvals.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o klvspiff/coarsen_klv.o klvspiff/coarsen_klv.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o klvspiff/countup_vtx_sep.o klvspiff/countup_vtx_sep.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o klvspiff/find_bndy.o klvspiff/find_bndy.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o klvspiff/flow.o klvspiff/flow.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o klvspiff/klv_init.o klvspiff/klv_init.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o klvspiff/klvspiff.o klvspiff/klvspiff.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o klvspiff/make_bpgraph.o klvspiff/make_bpgraph.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o klvspiff/make_sep_list.o klvspiff/make_sep_list.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o klvspiff/matching.o klvspiff/matching.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o klvspiff/nway_klv.o klvspiff/nway_klv.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o klvspiff/flatten.o klvspiff/flatten.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o coarsen/coarsen.o coarsen/coarsen.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o coarsen/interpolate.o coarsen/interpolate.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o coarsen/makefgraph.o coarsen/makefgraph.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o coarsen/makeccoords.o coarsen/makeccoords.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o coarsen/coarsen1.o coarsen/coarsen1.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o coarsen/makev2cv.o coarsen/makev2cv.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o coarsen/maxmatch.o coarsen/maxmatch.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o coarsen/maxmatch1.o coarsen/maxmatch1.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o coarsen/maxmatch2.o coarsen/maxmatch2.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o coarsen/maxmatch3.o coarsen/maxmatch3.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o coarsen/maxmatch4.o coarsen/maxmatch4.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o coarsen/maxmatch5.o coarsen/maxmatch5.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o connect/add_edges.o connect/add_edges.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o connect/connected.o connect/connected.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o connect/find_edges.o connect/find_edges.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/bidir.o eigen/bidir.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/bisect.o eigen/bisect.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/checkeig.o eigen/checkeig.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/checkeig_ext.o eigen/checkeig_ext.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/checkorth.o eigen/checkorth.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/cksturmcnt.o eigen/cksturmcnt.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/mkeigvecs.o eigen/mkeigvecs.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/eigensolve.o eigen/eigensolve.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/get_extval.o eigen/get_extval.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/get_ritzvals.o eigen/get_ritzvals.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/lanczos_FO.o eigen/lanczos_FO.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/lanczos_SO.o eigen/lanczos_SO.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/lanczos_SO_float.o eigen/lanczos_SO_float.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/lanczos_ext.o eigen/lanczos_ext.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/lanczos_ext_float.o eigen/lanczos_ext_float.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/lanc_seconds.o eigen/lanc_seconds.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/lanpause.o eigen/lanpause.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/makeorthlnk.o eigen/makeorthlnk.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/mkscanlist.o eigen/mkscanlist.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/orthog1.o eigen/orthog1.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/orthogonalize.o eigen/orthogonalize.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/orthogvec.o eigen/orthogvec.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/ql.o eigen/ql.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/rqi.o eigen/rqi.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/rqi_ext.o eigen/rqi_ext.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/scale_diag.o eigen/scale_diag.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/scanmax.o eigen/scanmax.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/scanmin.o eigen/scanmin.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/solistout.o eigen/solistout.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/sorthog.o eigen/sorthog.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/splarax.o eigen/splarax.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/sturmcnt.o eigen/sturmcnt.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/Tevec.o eigen/Tevec.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/tri_solve.o eigen/tri_solve.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/warnings.o eigen/warnings.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o symmlq/aprod.o symmlq/aprod.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o symmlq/msolve.o symmlq/msolve.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o symmlq/pow_dd.o symmlq/pow_dd.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o symmlq/symmlq.o symmlq/symmlq.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o symmlq/symmlqblas.o symmlq/symmlqblas.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o tinvit/tinvit.o tinvit/tinvit.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o tinvit/pythag.o tinvit/pythag.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o tinvit/epslon.o tinvit/epslon.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o optimize/determinant.o optimize/determinant.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o optimize/func2d.o optimize/func2d.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o optimize/func3d.o optimize/func3d.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o optimize/opt2d.o optimize/opt2d.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o optimize/opt3d.o optimize/opt3d.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o assign/assign.o assign/assign.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o assign/assign_out.o assign/assign_out.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o assign/mapper.o assign/mapper.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o assign/median.o assign/median.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o assign/merge_assign.o assign/merge_assign.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o assign/rec_median.o assign/rec_median.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o assign/rotate.o assign/rotate.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o assign/y2x.o assign/y2x.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o bpmatch/checkbp.o bpmatch/checkbp.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o bpmatch/inits2d.o bpmatch/inits2d.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o bpmatch/inits3d.o bpmatch/inits3d.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o bpmatch/genvals2d.o bpmatch/genvals2d.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o bpmatch/genvals3d.o bpmatch/genvals3d.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o bpmatch/map2d.o bpmatch/map2d.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o bpmatch/map3d.o bpmatch/map3d.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o bpmatch/movevtxs.o bpmatch/movevtxs.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o bpmatch/sorts2d.o bpmatch/sorts2d.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o bpmatch/sorts3d.o bpmatch/sorts3d.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o refine_map/compute_cube_edata.o refine_map/compute_cube_edata.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o refine_map/compute_cube_vdata.o refine_map/compute_cube_vdata.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o refine_map/refine_cube.o refine_map/refine_cube.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o refine_map/update_cube_edata.o refine_map/update_cube_edata.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o refine_map/update_cube_vdata.o refine_map/update_cube_vdata.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o refine_map/find_edge_cube.o refine_map/find_edge_cube.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o refine_map/init_cube_edata.o refine_map/init_cube_edata.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o refine_map/compute_mesh_edata.o refine_map/compute_mesh_edata.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o refine_map/compute_mesh_vdata.o refine_map/compute_mesh_vdata.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o refine_map/find_edge_mesh.o refine_map/find_edge_mesh.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o refine_map/init_mesh_edata.o refine_map/init_mesh_edata.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o refine_map/refine_mesh.o refine_map/refine_mesh.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o refine_map/update_mesh_edata.o refine_map/update_mesh_edata.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o refine_map/update_mesh_vdata.o refine_map/update_mesh_vdata.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o refine_map/refine_map.o refine_map/refine_map.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o refine_map/make_comm_graph.o refine_map/make_comm_graph.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o refine_part/refine_part.o refine_part/refine_part.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o refine_part/kl_refine.o refine_part/kl_refine.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o refine_part/make_maps_ref.o refine_part/make_maps_ref.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o refine_part/make_terms_ref.o refine_part/make_terms_ref.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o internal/force_internal.o internal/force_internal.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o internal/improve_internal.o internal/improve_internal.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o internal/check_internal.o internal/check_internal.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o misc/define_subcubes.o misc/define_subcubes.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o misc/define_submeshes.o misc/define_submeshes.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o misc/divide_procs.o misc/divide_procs.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o misc/merge_goals.o misc/merge_goals.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o misc/make_term_props.o misc/make_term_props.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o misc/count.o misc/count.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o misc/countup.o misc/countup.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o misc/countup_cube.o misc/countup_cube.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o misc/countup_mesh.o misc/countup_mesh.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o misc/make_subgoal.o misc/make_subgoal.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o misc/find_maxdeg.o misc/find_maxdeg.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o misc/make_maps.o misc/make_maps.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o misc/make_setlists.o misc/make_setlists.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o misc/sequence.o misc/sequence.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o misc/perturb.o misc/perturb.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o misc/simple_part.o misc/simple_part.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o misc/time_kernels.o misc/time_kernels.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o misc/timing.o misc/timing.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o util/affirm.o util/affirm.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o util/array_alloc_2D.o util/array_alloc_2D.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o util/bit_reverse.o util/bit_reverse.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o util/checkpnt.o util/checkpnt.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o util/cpvec.o util/cpvec.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o util/dot.o util/dot.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o util/doubleout.o util/doubleout.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o util/input_int.o util/input_int.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o util/gray.o util/gray.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o util/machine_params.o util/machine_params.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o util/makevwsqrt.o util/makevwsqrt.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o util/mkvec.o util/mkvec.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o util/norm.o util/norm.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o util/normalize.o util/normalize.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o util/mergesort.o util/mergesort.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o util/randomize.o util/randomize.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o util/smalloc.o util/smalloc.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o util/bail.o util/bail.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o util/scadd.o util/scadd.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o util/seconds.o util/seconds.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o util/setvec.o util/setvec.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o util/shell_sort.o util/shell_sort.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o util/strout.o util/strout.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o util/tri_prod.o util/tri_prod.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o util/true_or_false.o util/true_or_false.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o util/update.o util/update.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o util/vecout.o util/vecout.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o util/vecran.o util/vecran.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o util/vecscale.o util/vecscale.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 main/user_params.o main/interface.o main/main.o submain/balance.o submain/divide.o submain/submain.o input/input_assign.o input/check_input.o input/input.o input/input_geom.o input/input_graph.o input/read_params.o input/reflect_input.o input/read_val.o graph/check_graph.o graph/free_graph.o graph/reformat.o graph/subgraph.o graph/graph_out.o inertial/eigenvec2.o inertial/eigenvec3.o inertial/inertial.o inertial/inertial1d.o inertial/inertial2d.o inertial/inertial3d.o inertial/make_subgeom.o klspiff/buckets.o klspiff/buckets_bi.o klspiff/buckets1.o klspiff/bilistops.o klspiff/coarsen_kl.o klspiff/count_weights.o klspiff/compress_ewgts.o klspiff/kl_init.o klspiff/kl_output.o klspiff/klspiff.o klspiff/make_bndy_list.o klspiff/make_kl_list.o klspiff/nway_kl.o klvspiff/bpm_improve.o klvspiff/bucketsv.o klvspiff/clear_dvals.o klvspiff/coarsen_klv.o klvspiff/countup_vtx_sep.o klvspiff/find_bndy.o klvspiff/flow.o klvspiff/klv_init.o klvspiff/klvspiff.o klvspiff/make_bpgraph.o klvspiff/make_sep_list.o klvspiff/matching.o klvspiff/nway_klv.o klvspiff/flatten.o coarsen/coarsen.o coarsen/interpolate.o coarsen/makefgraph.o coarsen/makeccoords.o coarsen/coarsen1.o coarsen/makev2cv.o coarsen/maxmatch.o coarsen/maxmatch1.o coarsen/maxmatch2.o coarsen/maxmatch3.o coarsen/maxmatch4.o coarsen/maxmatch5.o connect/add_edges.o connect/connected.o connect/find_edges.o eigen/bidir.o eigen/bisect.o eigen/checkeig.o eigen/checkeig_ext.o eigen/checkorth.o eigen/cksturmcnt.o eigen/mkeigvecs.o eigen/eigensolve.o eigen/get_extval.o eigen/get_ritzvals.o eigen/lanczos_FO.o eigen/lanczos_SO.o eigen/lanczos_SO_float.o eigen/lanczos_ext.o eigen/lanczos_ext_float.o eigen/lanc_seconds.o eigen/lanpause.o eigen/makeorthlnk.o eigen/mkscanlist.o eigen/orthog1.o eigen/orthogonalize.o eigen/orthogvec.o eigen/ql.o eigen/rqi.o eigen/rqi_ext.o eigen/scale_diag.o eigen/scanmax.o eigen/scanmin.o eigen/solistout.o eigen/sorthog.o eigen/splarax.o eigen/sturmcnt.o eigen/Tevec.o eigen/tri_solve.o eigen/warnings.o symmlq/aprod.o symmlq/msolve.o symmlq/pow_dd.o symmlq/symmlq.o symmlq/symmlqblas.o tinvit/tinvit.o tinvit/pythag.o tinvit/epslon.o optimize/determinant.o optimize/func2d.o optimize/func3d.o optimize/opt2d.o optimize/opt3d.o assign/assign.o assign/assign_out.o assign/mapper.o assign/median.o assign/merge_assign.o assign/rec_median.o assign/rotate.o assign/y2x.o bpmatch/checkbp.o bpmatch/inits2d.o bpmatch/inits3d.o bpmatch/genvals2d.o bpmatch/genvals3d.o bpmatch/map2d.o bpmatch/map3d.o bpmatch/movevtxs.o bpmatch/sorts2d.o bpmatch/sorts3d.o refine_map/compute_cube_edata.o refine_map/compute_cube_vdata.o refine_map/refine_cube.o refine_map/update_cube_edata.o refine_map/update_cube_vdata.o refine_map/find_edge_cube.o refine_map/init_cube_edata.o refine_map/compute_mesh_edata.o refine_map/compute_mesh_vdata.o refine_map/find_edge_mesh.o refine_map/init_mesh_edata.o refine_map/refine_mesh.o refine_map/update_mesh_edata.o refine_map/update_mesh_vdata.o refine_map/refine_map.o refine_map/make_comm_graph.o refine_part/refine_part.o refine_part/kl_refine.o refine_part/make_maps_ref.o refine_part/make_terms_ref.o internal/force_internal.o internal/improve_internal.o internal/check_internal.o misc/define_subcubes.o misc/define_submeshes.o misc/divide_procs.o misc/merge_goals.o misc/make_term_props.o misc/count.o misc/countup.o misc/countup_cube.o misc/countup_mesh.o misc/make_subgoal.o misc/find_maxdeg.o misc/make_maps.o misc/make_setlists.o misc/sequence.o misc/perturb.o misc/simple_part.o misc/time_kernels.o misc/timing.o util/affirm.o util/array_alloc_2D.o util/bit_reverse.o util/checkpnt.o util/cpvec.o util/dot.o util/doubleout.o util/input_int.o util/gray.o util/machine_params.o util/makevwsqrt.o util/mkvec.o util/norm.o util/normalize.o util/mergesort.o util/randomize.o util/smalloc.o util/bail.o util/scadd.o util/seconds.o util/setvec.o util/shell_sort.o util/strout.o util/tri_prod.o util/true_or_false.o util/update.o util/vecout.o util/vecran.o util/vecscale.o -lm -o ../exec/chaco ********Output of running make on CHACO follows ******* rm -f */*.o ../exec/core /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o main/user_params.o main/user_params.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o main/interface.o main/interface.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o main/main.o main/main.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o submain/balance.o submain/balance.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o submain/divide.o submain/divide.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o submain/submain.o submain/submain.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o input/input_assign.o input/input_assign.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o input/check_input.o input/check_input.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o input/input.o input/input.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o input/input_geom.o input/input_geom.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o input/input_graph.o input/input_graph.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o input/read_params.o input/read_params.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o input/reflect_input.o input/reflect_input.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o input/read_val.o input/read_val.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o graph/check_graph.o graph/check_graph.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o graph/free_graph.o graph/free_graph.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o graph/reformat.o graph/reformat.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o graph/subgraph.o graph/subgraph.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o graph/graph_out.o graph/graph_out.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o inertial/eigenvec2.o inertial/eigenvec2.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o inertial/eigenvec3.o inertial/eigenvec3.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o inertial/inertial.o inertial/inertial.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o inertial/inertial1d.o inertial/inertial1d.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o inertial/inertial2d.o inertial/inertial2d.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o inertial/inertial3d.o inertial/inertial3d.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o inertial/make_subgeom.o inertial/make_subgeom.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o klspiff/buckets.o klspiff/buckets.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o klspiff/buckets_bi.o klspiff/buckets_bi.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o klspiff/buckets1.o klspiff/buckets1.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o klspiff/bilistops.o klspiff/bilistops.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o klspiff/coarsen_kl.o klspiff/coarsen_kl.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o klspiff/count_weights.o klspiff/count_weights.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o klspiff/compress_ewgts.o klspiff/compress_ewgts.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o klspiff/kl_init.o klspiff/kl_init.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o klspiff/kl_output.o klspiff/kl_output.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o klspiff/klspiff.o klspiff/klspiff.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o klspiff/make_bndy_list.o klspiff/make_bndy_list.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o klspiff/make_kl_list.o klspiff/make_kl_list.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o klspiff/nway_kl.o klspiff/nway_kl.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o klvspiff/bpm_improve.o klvspiff/bpm_improve.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o klvspiff/bucketsv.o klvspiff/bucketsv.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o klvspiff/clear_dvals.o klvspiff/clear_dvals.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o klvspiff/coarsen_klv.o klvspiff/coarsen_klv.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o klvspiff/countup_vtx_sep.o klvspiff/countup_vtx_sep.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o klvspiff/find_bndy.o klvspiff/find_bndy.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o klvspiff/flow.o klvspiff/flow.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o klvspiff/klv_init.o klvspiff/klv_init.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o klvspiff/klvspiff.o klvspiff/klvspiff.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o klvspiff/make_bpgraph.o klvspiff/make_bpgraph.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o klvspiff/make_sep_list.o klvspiff/make_sep_list.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o klvspiff/matching.o klvspiff/matching.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o klvspiff/nway_klv.o klvspiff/nway_klv.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o klvspiff/flatten.o klvspiff/flatten.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o coarsen/coarsen.o coarsen/coarsen.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o coarsen/interpolate.o coarsen/interpolate.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o coarsen/makefgraph.o coarsen/makefgraph.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o coarsen/makeccoords.o coarsen/makeccoords.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o coarsen/coarsen1.o coarsen/coarsen1.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o coarsen/makev2cv.o coarsen/makev2cv.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o coarsen/maxmatch.o coarsen/maxmatch.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o coarsen/maxmatch1.o coarsen/maxmatch1.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o coarsen/maxmatch2.o coarsen/maxmatch2.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o coarsen/maxmatch3.o coarsen/maxmatch3.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o coarsen/maxmatch4.o coarsen/maxmatch4.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o coarsen/maxmatch5.o coarsen/maxmatch5.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o connect/add_edges.o connect/add_edges.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o connect/connected.o connect/connected.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o connect/find_edges.o connect/find_edges.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/bidir.o eigen/bidir.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/bisect.o eigen/bisect.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/checkeig.o eigen/checkeig.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/checkeig_ext.o eigen/checkeig_ext.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/checkorth.o eigen/checkorth.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/cksturmcnt.o eigen/cksturmcnt.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/mkeigvecs.o eigen/mkeigvecs.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/eigensolve.o eigen/eigensolve.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/get_extval.o eigen/get_extval.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/get_ritzvals.o eigen/get_ritzvals.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/lanczos_FO.o eigen/lanczos_FO.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/lanczos_SO.o eigen/lanczos_SO.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/lanczos_SO_float.o eigen/lanczos_SO_float.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/lanczos_ext.o eigen/lanczos_ext.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/lanczos_ext_float.o eigen/lanczos_ext_float.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/lanc_seconds.o eigen/lanc_seconds.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/lanpause.o eigen/lanpause.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/makeorthlnk.o eigen/makeorthlnk.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/mkscanlist.o eigen/mkscanlist.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/orthog1.o eigen/orthog1.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/orthogonalize.o eigen/orthogonalize.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/orthogvec.o eigen/orthogvec.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/ql.o eigen/ql.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/rqi.o eigen/rqi.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/rqi_ext.o eigen/rqi_ext.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/scale_diag.o eigen/scale_diag.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/scanmax.o eigen/scanmax.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/scanmin.o eigen/scanmin.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/solistout.o eigen/solistout.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/sorthog.o eigen/sorthog.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/splarax.o eigen/splarax.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/sturmcnt.o eigen/sturmcnt.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/Tevec.o eigen/Tevec.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/tri_solve.o eigen/tri_solve.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o eigen/warnings.o eigen/warnings.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o symmlq/aprod.o symmlq/aprod.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o symmlq/msolve.o symmlq/msolve.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o symmlq/pow_dd.o symmlq/pow_dd.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o symmlq/symmlq.o symmlq/symmlq.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o symmlq/symmlqblas.o symmlq/symmlqblas.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o tinvit/tinvit.o tinvit/tinvit.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o tinvit/pythag.o tinvit/pythag.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o tinvit/epslon.o tinvit/epslon.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o optimize/determinant.o optimize/determinant.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o optimize/func2d.o optimize/func2d.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o optimize/func3d.o optimize/func3d.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o optimize/opt2d.o optimize/opt2d.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o optimize/opt3d.o optimize/opt3d.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o assign/assign.o assign/assign.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o assign/assign_out.o assign/assign_out.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o assign/mapper.o assign/mapper.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o assign/median.o assign/median.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o assign/merge_assign.o assign/merge_assign.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o assign/rec_median.o assign/rec_median.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o assign/rotate.o assign/rotate.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o assign/y2x.o assign/y2x.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o bpmatch/checkbp.o bpmatch/checkbp.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o bpmatch/inits2d.o bpmatch/inits2d.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o bpmatch/inits3d.o bpmatch/inits3d.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o bpmatch/genvals2d.o bpmatch/genvals2d.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o bpmatch/genvals3d.o bpmatch/genvals3d.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o bpmatch/map2d.o bpmatch/map2d.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o bpmatch/map3d.o bpmatch/map3d.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o bpmatch/movevtxs.o bpmatch/movevtxs.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o bpmatch/sorts2d.o bpmatch/sorts2d.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o bpmatch/sorts3d.o bpmatch/sorts3d.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o refine_map/compute_cube_edata.o refine_map/compute_cube_edata.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o refine_map/compute_cube_vdata.o refine_map/compute_cube_vdata.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o refine_map/refine_cube.o refine_map/refine_cube.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o refine_map/update_cube_edata.o refine_map/update_cube_edata.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o refine_map/update_cube_vdata.o refine_map/update_cube_vdata.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o refine_map/find_edge_cube.o refine_map/find_edge_cube.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o refine_map/init_cube_edata.o refine_map/init_cube_edata.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o refine_map/compute_mesh_edata.o refine_map/compute_mesh_edata.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o refine_map/compute_mesh_vdata.o refine_map/compute_mesh_vdata.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o refine_map/find_edge_mesh.o refine_map/find_edge_mesh.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o refine_map/init_mesh_edata.o refine_map/init_mesh_edata.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o refine_map/refine_mesh.o refine_map/refine_mesh.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o refine_map/update_mesh_edata.o refine_map/update_mesh_edata.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o refine_map/update_mesh_vdata.o refine_map/update_mesh_vdata.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o refine_map/refine_map.o refine_map/refine_map.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o refine_map/make_comm_graph.o refine_map/make_comm_graph.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o refine_part/refine_part.o refine_part/refine_part.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o refine_part/kl_refine.o refine_part/kl_refine.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o refine_part/make_maps_ref.o refine_part/make_maps_ref.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o refine_part/make_terms_ref.o refine_part/make_terms_ref.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o internal/force_internal.o internal/force_internal.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o internal/improve_internal.o internal/improve_internal.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o internal/check_internal.o internal/check_internal.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o misc/define_subcubes.o misc/define_subcubes.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o misc/define_submeshes.o misc/define_submeshes.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o misc/divide_procs.o misc/divide_procs.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o misc/merge_goals.o misc/merge_goals.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o misc/make_term_props.o misc/make_term_props.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o misc/count.o misc/count.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o misc/countup.o misc/countup.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o misc/countup_cube.o misc/countup_cube.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o misc/countup_mesh.o misc/countup_mesh.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o misc/make_subgoal.o misc/make_subgoal.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o misc/find_maxdeg.o misc/find_maxdeg.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o misc/make_maps.o misc/make_maps.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o misc/make_setlists.o misc/make_setlists.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o misc/sequence.o misc/sequence.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o misc/perturb.o misc/perturb.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o misc/simple_part.o misc/simple_part.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o misc/time_kernels.o misc/time_kernels.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o misc/timing.o misc/timing.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o util/affirm.o util/affirm.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o util/array_alloc_2D.o util/array_alloc_2D.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o util/bit_reverse.o util/bit_reverse.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o util/checkpnt.o util/checkpnt.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o util/cpvec.o util/cpvec.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o util/dot.o util/dot.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o util/doubleout.o util/doubleout.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o util/input_int.o util/input_int.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o util/gray.o util/gray.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o util/machine_params.o util/machine_params.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o util/makevwsqrt.o util/makevwsqrt.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o util/mkvec.o util/mkvec.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o util/norm.o util/norm.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o util/normalize.o util/normalize.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o util/mergesort.o util/mergesort.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o util/randomize.o util/randomize.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o util/smalloc.o util/smalloc.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o util/bail.o util/bail.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o util/scadd.o util/scadd.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o util/seconds.o util/seconds.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o util/setvec.o util/setvec.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o util/shell_sort.o util/shell_sort.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o util/strout.o util/strout.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o util/tri_prod.o util/tri_prod.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o util/true_or_false.o util/true_or_false.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o util/update.o util/update.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o util/vecout.o util/vecout.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o util/vecran.o util/vecran.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -Imain -fstack-protector -O3 -o util/vecscale.o util/vecscale.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 main/user_params.o main/interface.o main/main.o submain/balance.o submain/divide.o submain/submain.o input/input_assign.o input/check_input.o input/input.o input/input_geom.o input/input_graph.o input/read_params.o input/reflect_input.o input/read_val.o graph/check_graph.o graph/free_graph.o graph/reformat.o graph/subgraph.o graph/graph_out.o inertial/eigenvec2.o inertial/eigenvec3.o inertial/inertial.o inertial/inertial1d.o inertial/inertial2d.o inertial/inertial3d.o inertial/make_subgeom.o klspiff/buckets.o klspiff/buckets_bi.o klspiff/buckets1.o klspiff/bilistops.o klspiff/coarsen_kl.o klspiff/count_weights.o klspiff/compress_ewgts.o klspiff/kl_init.o klspiff/kl_output.o klspiff/klspiff.o klspiff/make_bndy_list.o klspiff/make_kl_list.o klspiff/nway_kl.o klvspiff/bpm_improve.o klvspiff/bucketsv.o klvspiff/clear_dvals.o klvspiff/coarsen_klv.o klvspiff/countup_vtx_sep.o klvspiff/find_bndy.o klvspiff/flow.o klvspiff/klv_init.o klvspiff/klvspiff.o klvspiff/make_bpgraph.o klvspiff/make_sep_list.o klvspiff/matching.o klvspiff/nway_klv.o klvspiff/flatten.o coarsen/coarsen.o coarsen/interpolate.o coarsen/makefgraph.o coarsen/makeccoords.o coarsen/coarsen1.o coarsen/makev2cv.o coarsen/maxmatch.o coarsen/maxmatch1.o coarsen/maxmatch2.o coarsen/maxmatch3.o coarsen/maxmatch4.o coarsen/maxmatch5.o connect/add_edges.o connect/connected.o connect/find_edges.o eigen/bidir.o eigen/bisect.o eigen/checkeig.o eigen/checkeig_ext.o eigen/checkorth.o eigen/cksturmcnt.o eigen/mkeigvecs.o eigen/eigensolve.o eigen/get_extval.o eigen/get_ritzvals.o eigen/lanczos_FO.o eigen/lanczos_SO.o eigen/lanczos_SO_float.o eigen/lanczos_ext.o eigen/lanczos_ext_float.o eigen/lanc_seconds.o eigen/lanpause.o eigen/makeorthlnk.o eigen/mkscanlist.o eigen/orthog1.o eigen/orthogonalize.o eigen/orthogvec.o eigen/ql.o eigen/rqi.o eigen/rqi_ext.o eigen/scale_diag.o eigen/scanmax.o eigen/scanmin.o eigen/solistout.o eigen/sorthog.o eigen/splarax.o eigen/sturmcnt.o eigen/Tevec.o eigen/tri_solve.o eigen/warnings.o symmlq/aprod.o symmlq/msolve.o symmlq/pow_dd.o symmlq/symmlq.o symmlq/symmlqblas.o tinvit/tinvit.o tinvit/pythag.o tinvit/epslon.o optimize/determinant.o optimize/func2d.o optimize/func3d.o optimize/opt2d.o optimize/opt3d.o assign/assign.o assign/assign_out.o assign/mapper.o assign/median.o assign/merge_assign.o assign/rec_median.o assign/rotate.o assign/y2x.o bpmatch/checkbp.o bpmatch/inits2d.o bpmatch/inits3d.o bpmatch/genvals2d.o bpmatch/genvals3d.o bpmatch/map2d.o bpmatch/map3d.o bpmatch/movevtxs.o bpmatch/sorts2d.o bpmatch/sorts3d.o refine_map/compute_cube_edata.o refine_map/compute_cube_vdata.o refine_map/refine_cube.o refine_map/update_cube_edata.o refine_map/update_cube_vdata.o refine_map/find_edge_cube.o refine_map/init_cube_edata.o refine_map/compute_mesh_edata.o refine_map/compute_mesh_vdata.o refine_map/find_edge_mesh.o refine_map/init_mesh_edata.o refine_map/refine_mesh.o refine_map/update_mesh_edata.o refine_map/update_mesh_vdata.o refine_map/refine_map.o refine_map/make_comm_graph.o refine_part/refine_part.o refine_part/kl_refine.o refine_part/make_maps_ref.o refine_part/make_terms_ref.o internal/force_internal.o internal/improve_internal.o internal/check_internal.o misc/define_subcubes.o misc/define_submeshes.o misc/divide_procs.o misc/merge_goals.o misc/make_term_props.o misc/count.o misc/countup.o misc/countup_cube.o misc/countup_mesh.o misc/make_subgoal.o misc/find_maxdeg.o misc/make_maps.o misc/make_setlists.o misc/sequence.o misc/perturb.o misc/simple_part.o misc/time_kernels.o misc/timing.o util/affirm.o util/array_alloc_2D.o util/bit_reverse.o util/checkpnt.o util/cpvec.o util/dot.o util/doubleout.o util/input_int.o util/gray.o util/machine_params.o util/makevwsqrt.o util/mkvec.o util/norm.o util/normalize.o util/mergesort.o util/randomize.o util/smalloc.o util/bail.o util/scadd.o util/seconds.o util/setvec.o util/shell_sort.o util/strout.o util/tri_prod.o util/true_or_false.o util/update.o util/vecout.o util/vecran.o util/vecscale.o -lm -o ../exec/chacoinput/check_input.c: In function ‘check_assignment’: input/check_input.c:472:12: warning: type of ‘ndims’ defaults to ‘int’ [-Wimplicit-int] static int check_assignment(assignment, nvtxs, nsets_tot, ndims, local_method) ^ input/check_input.c:472:12: warning: type of ‘local_method’ defaults to ‘int’ [-Wimplicit-int] input/input.c: In function ‘input_queries’: input/input.c:55:2: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%s", inname); ^ input/input.c:67:2: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%s", outassignname); ^ input/input.c:74:2: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%s", outfilename); ^ input/input.c:107:6: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%s", inassignname); ^ input/input.c:120:6: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%s", geomname); ^ input/input.c:143:21: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%s", geomname); ^ input/input.c:165:17: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result] scanf("%s", geomname); ^ inertial/inertial1d.c: In function ‘inertial1d’: inertial/inertial1d.c:10:11: warning: type of ‘nsets’ defaults to ‘int’ [-Wimplicit-int] void inertial1d(graph, nvtxs, cube_or_mesh, nsets, x, sets, goal, ^ klspiff/nway_kl.c: In function ‘nway_kl’: klspiff/nway_kl.c:410:22: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] bestptr->prev = (struct bilist *) bestto; ^ klspiff/nway_kl.c:466:12: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] bestto = (int) bptr->prev; ^ klvspiff/coarsen_klv.c: In function ‘coarsen_klv’: klvspiff/coarsen_klv.c:240:9: warning: implicit declaration of function ‘simple_part’ [-Wimplicit-function-declaration] simple_part(graph, nvtxs, assignment, nsets, 1, real_goal); ^ klvspiff/flatten.c: In function ‘find_flat’: klvspiff/flatten.c:113:5: warning: implicit declaration of function ‘sfree’ [-Wimplicit-function-declaration] sfree((char *) scatter); ^ klvspiff/flatten.c:30:15: note: previous declaration of ‘sfree’ was here int sfree(); ^ coarsen/maxmatch4.c: In function ‘maxmatch4’: coarsen/maxmatch4.c:16:11: warning: type of ‘using_ewgts’ defaults to ‘int’ [-Wimplicit-int] int maxmatch4(graph, nvtxs, nedges, mflag, using_ewgts) ^ ********End of Output of running make on CHACO ******* Checking for library in Download CHACO: ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libchaco.a'] Contents: ['share', 'lib', 'externalpackages', 'include', 'bin'] ================================================================================ TEST check from config.libraries(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [interface] in library ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libchaco.a'] ['libm.a'] Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.libraries/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.packages.valgrind -I/tmp/petsc-oluu3nld/config.packages.MPI -I/tmp/petsc-oluu3nld/config.packages.metis -I/tmp/petsc-oluu3nld/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char interface(); static void _check_interface() { interface(); } int main() { _check_interface();; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -o /tmp/petsc-oluu3nld/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.o -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lchaco -lm -lstdc++ -ldl Defined "HAVE_LIBCHACO" to "1" Checking for optional headers [] in Download CHACO: ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] ================================================================================ TEST checkInclude from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] Found header files [] in ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] Checking for headers [] in Download CHACO: ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] Checking for functions [ddot_chaco] in library ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libchaco.a'] ['libm.a'] Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.libraries/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.packages.valgrind -I/tmp/petsc-oluu3nld/config.packages.MPI -I/tmp/petsc-oluu3nld/config.packages.metis -I/tmp/petsc-oluu3nld/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_chaco(); static void _check_ddot_chaco() { ddot_chaco(); } int main() { _check_ddot_chaco();; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -o /tmp/petsc-oluu3nld/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.o -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lchaco -lm -lstdc++ -ldl Defined "HAVE_LIBCHACO" to "1" ================================================================================ TEST checkVersion from config.packages.Chaco(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:992) TESTING: checkVersion from config.packages.Chaco(config/BuildSystem/config/package.py:992) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ================================================================================ TEST checkSharedLibrary from config.packages.Chaco(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:926) TESTING: checkSharedLibrary from config.packages.Chaco(config/BuildSystem/config/package.py:926) By default we don't care about checking if the library is shared child config.packages.Chaco 20.958681 Running Executable WITHOUT threads to time it out Executing: uname -s stdout: Linux ================================================================================ TEST checkDependencies from config.packages.hdf5(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:843) TESTING: checkDependencies from config.packages.hdf5(config/BuildSystem/config/package.py:843) ================================================================================ TEST configureLibrary from config.packages.hdf5(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/packages/hdf5.py:83) TESTING: configureLibrary from config.packages.hdf5(config/BuildSystem/config/packages/hdf5.py:83) ================================================================================== Checking for a functional hdf5 Looking for HDF5 at git.hdf5, hg.hdf5 or a directory starting with ['hdf5'] Could not locate an existing copy of HDF5: ['git.parmetis', 'Chaco-2.2-p2', 'mpich-3.3.2', 'git.ctetgen', 'zlib-1.2.11', 'git.metis'] Downloading hdf5 =============================================================================== Trying to download https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.12/hdf5-1.12.0/src/hdf5-1.12.0.tar.bz2 for HDF5 =============================================================================== Downloading https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.12/hdf5-1.12.0/src/hdf5-1.12.0.tar.bz2 to /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/_d_hdf5-1.12.0.tar.bz2 Extracting /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/_d_hdf5-1.12.0.tar.bz2 Running Executable WITHOUT threads to time it out Executing: cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages; chmod -R a+r hdf5-1.12.0;find hdf5-1.12.0 -type d -name "*" -exec chmod a+rx {} \; Looking for HDF5 at git.hdf5, hg.hdf5 or a directory starting with ['hdf5'] Found a copy of HDF5 in hdf5-1.12.0 All intermediate test results are stored in /tmp/petsc-oluu3nld/config.packages.hdf5 Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -v stdout: mpifort for MPICH version 3.3.2 HDF5 was just downloaded, forcing a rebuild because cannot determine if package has changed =============================================================================== Running configure on HDF5; this may take several minutes =============================================================================== Running Executable WITHOUT threads to time it out Executing: ./configure --prefix=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt MAKE=/usr/bin/make --libdir=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib CC="/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc" CFLAGS="-fstack-protector -O3" AR="/usr/bin/ar" ARFLAGS="cr" CXX="/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx" CXXFLAGS="-fstack-protector -O3" F90="/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90" F90FLAGS="-ffree-line-length-0 -O3" FFLAGS="-ffree-line-length-0 -O3" FC="/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90" F77="/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90" FCFLAGS="-ffree-line-length-0 -O3" --enable-shared --enable-parallel --enable-fortran --with-zlib=yes --with-szlib=no CPPFLAGS="-I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include" LIBS="-Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lz -lm" stdout: checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a 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creating fortran/src/H5config_f.inc config.status: executing pubconf commands creating src/H5pubconf.h Post process src/libhdf5.settings config.status: executing depfiles commands config.status: executing libtool commands config.status: executing .classes commands SUMMARY OF THE HDF5 CONFIGURATION ================================= General Information: ------------------- HDF5 Version: 1.12.0 Configured on: Wed Jun 3 10:25:01 PDT 2020 Configured by: dsu@andromeda Host system: x86_64-unknown-linux-gnu Uname information: Linux andromeda 4.15.0-46-generic #49~16.04.1-Ubuntu SMP Tue Feb 12 17:45:24 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux Byte sex: little-endian Installation point: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt Compiling Options: ------------------ Build Mode: debug Debugging Symbols: yes Asserts: yes Profiling: no Optimization Level: debug Linking Options: ---------------- Libraries: static, shared Statically Linked Executables: LDFLAGS: H5_LDFLAGS: AM_LDFLAGS: Extra libraries: -lz -ldl -lm -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lz -lm Archiver: /usr/bin/ar AR_FLAGS: cr Ranlib: ranlib Languages: ---------- C: yes C Compiler: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc ( MPICH version 3.3.2 Configured with: ../src/configure -v --with-pkgversion='Ubuntu 5.4.0-6ubuntu1~16.04.12' --with-bugurl=file:///usr/share/doc/gcc-5/README.Bugs --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-5 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx --enable-plugin --with-system-zlib --disable-browser-plugin --enable-java-awt=gtk --enable-gtk-cairo --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-5-amd64/jre --enable-java-home --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-5-amd64 --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-5-amd64 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --enable-objc-gc --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu built with gcc version 5.4.0 20160609 (Ubuntu 5.4.0-6ubuntu1~16.04.12)) CPPFLAGS: -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include H5_CPPFLAGS: -D_GNU_SOURCE -D_POSIX_C_SOURCE=200809L -UNDEBUG -DH5AC_DEBUG -DH5B2_DEBUG -DH5CX_DEBUG -DH5D_DEBUG -DH5F_DEBUG -DH5HL_DEBUG -DH5I_DEBUG -DH5O_DEBUG -DH5S_DEBUG -DH5ST_DEBUG -DH5T_DEBUG -DH5Z_DEBUG -DH5_DEBUG_API AM_CPPFLAGS: C Flags: -fstack-protector -O3 H5 C Flags: -std=c99 -Wall -Wcast-qual -Wconversion -Wextra -Wfloat-equal -Wformat=2 -Winit-self -Winvalid-pch -Wmissing-include-dirs -Wno-c++-compat -Wno-format-nonliteral -Wshadow -Wundef -Wwrite-strings -pedantic -Wbad-function-cast -Wcast-align -Wdeclaration-after-statement -Wdisabled-optimization -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wold-style-definition -Wpacked -Wredundant-decls -Wstrict-prototypes -Wswitch-enum -Wswitch-default -Wunused-macros -Wunsafe-loop-optimizations -Wlogical-op -Wlarger-than=2560 -Wsync-nand -Wframe-larger-than=16384 -Wpacked-bitfield-compat -Wstrict-overflow=5 -Wjump-misses-init -Wunsuffixed-float-constants -Wdouble-promotion -Wtrampolines -Wstack-usage=8192 -Wvector-operation-performance -Wdate-time -Warray-bounds=2 -Wc99-c11-compat -ftrapv -fno-common -g -fno-omit-frame-pointer -Wno-aggregate-return -Wno-inline -Wno-missing-format-attribute -Wno-missing-noreturn -Wno-suggest-attribute=const -Wno-suggest-attribute=pure -Wno-suggest-attribute=noreturn -Wno-suggest-attribute=format -Og AM C Flags: Shared C Library: yes Static C Library: yes Fortran: yes Fortran Compiler: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 ( MPICH version 3.3.2 Configured with: ../src/configure -v --with-pkgversion='Ubuntu 5.4.0-6ubuntu1~16.04.12' --with-bugurl=file:///usr/share/doc/gcc-5/README.Bugs --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-5 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx --enable-plugin --with-system-zlib --disable-browser-plugin --enable-java-awt=gtk --enable-gtk-cairo --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-5-amd64/jre --enable-java-home --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-5-amd64 --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-5-amd64 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --enable-objc-gc --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu built with gcc version 5.4.0 20160609 (Ubuntu 5.4.0-6ubuntu1~16.04.12)) Fortran Flags: -ffree-line-length-0 -O3 H5 Fortran Flags: -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og AM Fortran Flags: Shared Fortran Library: yes Static Fortran Library: yes C++: no Java: no Features: --------- Parallel HDF5: yes Parallel Filtered Dataset Writes: yes Large Parallel I/O: yes High-level library: yes Build HDF5 Tests: yes Build HDF5 Tools: yes Threadsafety: no Default API mapping: v112 With deprecated public symbols: yes I/O filters (external): deflate(zlib) MPE: Map (H5M) API: no Direct VFD: no (Read-Only) S3 VFD: no (Read-Only) HDFS VFD: no dmalloc: no Packages w/ extra debug output: AC,B2,CX,D,F,HL,I,O,S,ST,T,Z API tracing: yes Using memory checker: no Memory allocation sanity checks: yes Function stack tracing: no Strict file format checks: yes Optimization instrumentation: yes =============================================================================== Running make on HDF5; this may take several minutes =============================================================================== Running Executable WITHOUT threads to time it out Executing: /usr/bin/make clean stdout: Making clean in src make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/src' test -z "libhdf5.la" || rm -f libhdf5.la rm -f ./so_locations rm -rf .libs _libs rm -f H5detect H5make_libsettings rm -f *.o test -z "H5Tinit.c H5lib_settings.c" || rm -f H5Tinit.c H5lib_settings.c test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/src' Making clean in test make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/test' rm -f testhdf5 cache cache_api cache_image cache_tagging lheap ohdr stab gheap evict_on_close farray earray btree2 fheap pool accum hyperslab istore bittests dt_arith page_buffer dtypes dsets chunk_info cmpd_dset filter_fail extend direct_chunk external efc objcopy objcopy_ref links unlink twriteorder big mtime fillval mount flush1 flush2 app_ref enum set_extent ttsafe enc_dec_plist enc_dec_plist_cross_platform getname vfd ros3 s3comms hdfs ntypes dangle dtransform reserved cross_read freespace mf vds file_image unregister cache_logging cork swmr vol error_test err_compat tcheck_version testmeta accum_swmr_reader atomic_writer atomic_reader external_env links_env filenotclosed del_many_dense_attrs flushrefresh use_append_chunk use_append_mchunks use_disable_mdc_flushes swmr_generator swmr_start_write swmr_reader swmr_writer swmr_remove_reader swmr_remove_writer swmr_addrem_writer swmr_sparse_reader swmr_sparse_writer swmr_check_compat_vfd vds_env vds_swmr_gen vds_swmr_reader vds_swmr_writer filter_plugin vol_plugin rm -rf .libs _libs test -z "libh5test.la libfilter_plugin1_dsets.la libfilter_plugin2_dsets.la libfilter_plugin3_dsets.la libfilter_plugin4_groups.la libnull_vol_connector.la" || rm -f libh5test.la libfilter_plugin1_dsets.la libfilter_plugin2_dsets.la libfilter_plugin3_dsets.la libfilter_plugin4_groups.la libnull_vol_connector.la rm -f ./so_locations rm -f *.o test -z "testhdf5.log cache.log cache_api.log cache_image.log cache_tagging.log lheap.log ohdr.log stab.log gheap.log evict_on_close.log farray.log earray.log btree2.log fheap.log pool.log accum.log hyperslab.log istore.log bittests.log dt_arith.log page_buffer.log dtypes.log dsets.log chunk_info.log cmpd_dset.log filter_fail.log extend.log direct_chunk.log external.log efc.log objcopy.log objcopy_ref.log links.log unlink.log twriteorder.log big.log mtime.log fillval.log mount.log flush1.log flush2.log app_ref.log enum.log set_extent.log ttsafe.log enc_dec_plist.log enc_dec_plist_cross_platform.log getname.log vfd.log ros3.log s3comms.log hdfs.log ntypes.log dangle.log dtransform.log reserved.log cross_read.log freespace.log mf.log vds.log file_image.log unregister.log cache_logging.log cork.log swmr.log vol.log testerror.log testlibinfo.log testcheck_version.log testlinks_env.log testexternal_env.log testswmr.log testvds_env.log testvdsswmr.log testflushrefresh.log test_usecases.log testabort_fail.log test_filter_plugin.log test_vol_plugin.log" || rm -f testhdf5.log cache.log cache_api.log cache_image.log cache_tagging.log lheap.log ohdr.log stab.log gheap.log evict_on_close.log farray.log earray.log btree2.log fheap.log pool.log accum.log hyperslab.log istore.log bittests.log dt_arith.log page_buffer.log dtypes.log dsets.log chunk_info.log cmpd_dset.log filter_fail.log extend.log direct_chunk.log external.log efc.log objcopy.log objcopy_ref.log links.log unlink.log twriteorder.log big.log mtime.log fillval.log mount.log flush1.log flush2.log app_ref.log enum.log set_extent.log ttsafe.log enc_dec_plist.log enc_dec_plist_cross_platform.log getname.log vfd.log ros3.log s3comms.log hdfs.log ntypes.log dangle.log dtransform.log reserved.log cross_read.log freespace.log mf.log vds.log file_image.log unregister.log cache_logging.log cork.log swmr.log vol.log testerror.log testlibinfo.log testcheck_version.log testlinks_env.log testexternal_env.log testswmr.log testvds_env.log testvdsswmr.log testflushrefresh.log test_usecases.log testabort_fail.log test_filter_plugin.log test_vol_plugin.log test -z "testhdf5.trs cache.trs cache_api.trs cache_image.trs cache_tagging.trs lheap.trs ohdr.trs stab.trs gheap.trs evict_on_close.trs farray.trs earray.trs btree2.trs fheap.trs pool.trs accum.trs hyperslab.trs istore.trs bittests.trs dt_arith.trs page_buffer.trs dtypes.trs dsets.trs chunk_info.trs cmpd_dset.trs filter_fail.trs extend.trs direct_chunk.trs external.trs efc.trs objcopy.trs objcopy_ref.trs links.trs unlink.trs twriteorder.trs big.trs mtime.trs fillval.trs mount.trs flush1.trs flush2.trs app_ref.trs enum.trs set_extent.trs ttsafe.trs enc_dec_plist.trs enc_dec_plist_cross_platform.trs getname.trs vfd.trs ros3.trs s3comms.trs hdfs.trs ntypes.trs dangle.trs dtransform.trs reserved.trs cross_read.trs freespace.trs mf.trs vds.trs file_image.trs unregister.trs cache_logging.trs cork.trs swmr.trs vol.trs testerror.trs testlibinfo.trs testcheck_version.trs testlinks_env.trs testexternal_env.trs testswmr.trs testvds_env.trs testvdsswmr.trs testflushrefresh.trs test_usecases.trs testabort_fail.trs test_filter_plugin.trs test_vol_plugin.trs" || rm -f testhdf5.trs cache.trs cache_api.trs cache_image.trs cache_tagging.trs lheap.trs ohdr.trs stab.trs gheap.trs evict_on_close.trs farray.trs earray.trs btree2.trs fheap.trs pool.trs accum.trs hyperslab.trs istore.trs bittests.trs dt_arith.trs page_buffer.trs dtypes.trs dsets.trs chunk_info.trs cmpd_dset.trs filter_fail.trs extend.trs direct_chunk.trs external.trs efc.trs objcopy.trs objcopy_ref.trs links.trs unlink.trs twriteorder.trs big.trs mtime.trs fillval.trs mount.trs flush1.trs flush2.trs app_ref.trs enum.trs set_extent.trs ttsafe.trs enc_dec_plist.trs enc_dec_plist_cross_platform.trs getname.trs vfd.trs ros3.trs s3comms.trs hdfs.trs ntypes.trs dangle.trs dtransform.trs reserved.trs cross_read.trs freespace.trs mf.trs vds.trs file_image.trs unregister.trs cache_logging.trs cork.trs swmr.trs vol.trs testerror.trs testlibinfo.trs testcheck_version.trs testlinks_env.trs testexternal_env.trs testswmr.trs testvds_env.trs testvdsswmr.trs testflushrefresh.trs test_usecases.trs testabort_fail.trs test_filter_plugin.trs test_vol_plugin.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 accum.h5 cmpd_dset.h5 compact_dataset.h5 dataset.h5 dset_offset.h5 max_compact_dataset.h5 simple.h5 set_local.h5 random_chunks.h5 huge_chunks.h5 chunk_cache.h5 big_chunk.h5 chunk_fast.h5 chunk_expand.h5 chunk_fixed.h5 copy_dcpl_newfile.h5 partial_chunks.h5 layout_extend.h5 zero_chunk.h5 chunk_single.h5 swmr_non_latest.h5 earray_hdr_fd.h5 farray_hdr_fd.h5 bt2_hdr_fd.h5 storage_size.h5 dls_01_strings.h5 extend.h5 istore.h5 extlinks*.h5 frspace.h5 links*.h5 sys_file1 tfile[1-7].h5 th5s[1-4].h5 lheap.h5 fheap.h5 ohdr.h5 stab.h5 extern_[1-5].h5 extern_[1-4][rw].raw gheap[0-4].h5 ohdr_min_a.h5 ohdr_min_b.h5 min_dset_ohdr_testfile.h5 dt_arith[1-2] links.h5 links[0-6]*.h5 extlinks[0-15].h5 tmp tmp_links tmp2_links tmp_links_env tmp_vds_env big.data big[0-9][0-9][0-9][0-9][0-9].h5 stdio.h5 sec2.h5 dtypes[0-9].h5 dtypes1[0].h5 dt_arith[1-2].h5 tattr.h5 tselect.h5 mtime.h5 unlink.h5 unicode.h5 coord.h5 fillval_[0-9].h5 fillval.raw mount_[0-9].h5 testmeta.h5 ttime.h5 trefer[1-3].h5 trefer_*.h5 tvltypes.h5 tvlstr.h5 tvlstr2.h5 twriteorder.dat flush.h5 flush-swmr.h5 noflush.h5 noflush-swmr.h5 flush_extend.h5 flush_extend-swmr.h5 noflush_extend.h5 noflush_extend-swmr.h5 enum1.h5 titerate.h5 ttsafe.h5 tarray1.h5 tgenprop.h5 tmisc[0-9]*.h5 set_extent[1-5].h5 ext[12].bin getname.h5 getname[1-3].h5 sec2_file.h5 direct_file.h5 family_file000[0-3][0-9].h5 new_family_v16_000[0-3][0-9].h5 multi_file-[rs].h5 core_file filter_plugin.h5 new_move_[ab].h5 ntypes.h5 dangle.h5 error_test.h5 err_compat.h5 dtransform.h5 test_filters.h5 get_file_name.h5 tstint[1-2].h5 unlink_chunked.h5 btree2.h5 btree2_tmp.h5 objcopy_src.h5 objcopy_dst.h5 objcopy_ext.dat trefer1.h5 trefer2.h5 app_ref.h5 farray.h5 farray_tmp.h5 earray.h5 earray_tmp.h5 efc[0-5].h5 log_vfd_out.log log_ros3_out.log log_s3comms_out.log new_multi_file_v16-r.h5 new_multi_file_v16-s.h5 split_get_file_image_test-m.h5 split_get_file_image_test-r.h5 file_image_core_test.h5.copy unregister_filter_1.h5 unregister_filter_2.h5 vds_virt.h5 vds_dapl.h5 vds_src_[0-1].h5 swmr_data.h5 use_use_append_chunk.h5 use_append_mchunks.h5 use_disable_mdc_flushes.h5 flushrefresh.h5 flushrefresh_VERIFICATION_START flushrefresh_VERIFICATION_CHECKPOINT1 flushrefresh_VERIFICATION_CHECKPOINT2 flushrefresh_VERIFICATION_DONE atomic_data accum_swmr_big.h5 ohdr_swmr.h5 test_swmr*.h5 cache_logging.h5 cache_logging.out vds_swmr.h5 vds_swmr_src_*.h5 swmr[0-2].h5 swmr_writer.out swmr_writer.log.* swmr_reader.out.* swmr_reader.log.* tbogus.h5.copy cache_image_test.h5 direct_chunk.h5 native_vol_test.h5 make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/test' Making clean in testpar make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/testpar' rm -f t_mpi t_bigio testphdf5 t_cache t_cache_image t_pread t_pshutdown t_prestart t_init_term t_shapesame t_filters_parallel t_2Gio t_pflush1 t_pflush2 rm -rf .libs _libs rm -f *.o test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 MPItest.h5 Para*.h5 bigio_test.h5 CacheTestDummy.h5 ShapeSameTest.h5 shutdown.h5 after_mpi_fin.h5 go make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/testpar' Making clean in bin make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/bin' test -z "h5redeploy" || rm -f h5redeploy rm -rf .libs _libs test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/bin' Making clean in tools make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools' Making clean in lib make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/lib' rm -rf .libs _libs test -z "libh5tools.la" || rm -f libh5tools.la rm -f ./so_locations rm -f *.o test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/lib' Making clean in src make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src' Making clean in h5diff make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5diff' rm -f h5diff ph5diff rm -rf .libs _libs rm -f *.o test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5diff' Making clean in h5ls make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5ls' rm -f h5ls rm -rf .libs _libs rm -f *.o test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5ls' Making clean in h5dump make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5dump' rm -f h5dump rm -rf .libs _libs rm -f *.o test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5dump' Making clean in misc make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/misc' rm -f h5debug h5repart h5mkgrp h5clear rm -rf .libs _libs rm -f *.o test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/misc' Making clean in h5import make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5import' rm -f h5import rm -rf .libs _libs rm -f *.o test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5import' Making clean in h5repack make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5repack' rm -f h5repack rm -rf .libs _libs test -z "libh5repack.la" || rm -f libh5repack.la rm -f ./so_locations rm -f *.o test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5repack' Making clean in h5jam make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5jam' rm -f h5jam h5unjam rm -rf .libs _libs rm -f *.o test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5jam' Making clean in h5copy make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5copy' rm -f h5copy rm -rf .libs _libs rm -f *.o test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 *.h5 make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5copy' Making clean in h5format_convert make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5format_convert' rm -f h5format_convert test -z "" || rm -f rm -rf .libs _libs rm -f *.o test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5format_convert' Making clean in h5stat make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5stat' rm -f h5stat test -z "" || rm -f rm -rf .libs _libs rm -f *.o test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5stat' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src' rm -rf .libs _libs test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src' Making clean in test make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test' Making clean in h5diff make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5diff' rm -f h5diffgentest rm -rf .libs _libs test -z "libdynlibdiff.la" || rm -f libdynlibdiff.la rm -f ./so_locations rm -f *.o test -z "h5diffgentest.log testh5diff.log h5diff_plugin.log" || rm -f h5diffgentest.log testh5diff.log h5diff_plugin.log test -z "h5diffgentest.trs testh5diff.trs h5diff_plugin.trs" || rm -f h5diffgentest.trs testh5diff.trs h5diff_plugin.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 *.h5 expect_sorted actual_sorted make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5diff' Making clean in h5ls make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5ls' rm -rf .libs _libs test -z "libdynlibls.la" || rm -f libdynlibls.la rm -f ./so_locations rm -f *.o test -z "testh5ls.log testh5lsvds.log h5ls_plugin.log" || rm -f testh5ls.log testh5lsvds.log h5ls_plugin.log test -z "testh5ls.trs testh5lsvds.trs h5ls_plugin.trs" || rm -f testh5ls.trs testh5lsvds.trs h5ls_plugin.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5ls' Making clean in h5dump make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5dump' rm -f h5dumpgentest binread rm -rf .libs _libs test -z "libdynlibdump.la" || rm -f libdynlibdump.la rm -f ./so_locations rm -f *.o test -z "h5dumpgentest.log testh5dump.log testh5dumppbits.log testh5dumpvds.log testh5dumpxml.log h5dump_plugin.log" || rm -f h5dumpgentest.log testh5dump.log testh5dumppbits.log testh5dumpvds.log testh5dumpxml.log h5dump_plugin.log test -z "h5dumpgentest.trs testh5dump.trs testh5dumppbits.trs testh5dumpvds.trs testh5dumpxml.trs h5dump_plugin.trs" || rm -f h5dumpgentest.trs testh5dump.trs testh5dumppbits.trs testh5dumpvds.trs testh5dumpxml.trs h5dump_plugin.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 *.h5 *.bin make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5dump' Making clean in misc make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/misc' Making clean in vds make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/misc/vds' rm -f UC_1_one_dim_gen UC_2_two_dims_gen UC_3_gaps_gen UC_4_printf_gen UC_5_stride_gen rm -rf .libs _libs rm -f *.o test -z "UC_1_one_dim_gen.log UC_2_two_dims_gen.log UC_3_gaps_gen.log UC_4_printf_gen.log UC_5_stride_gen.log" || rm -f UC_1_one_dim_gen.log UC_2_two_dims_gen.log UC_3_gaps_gen.log UC_4_printf_gen.log UC_5_stride_gen.log test -z "UC_1_one_dim_gen.trs UC_2_two_dims_gen.trs UC_3_gaps_gen.trs UC_4_printf_gen.trs UC_5_stride_gen.trs" || rm -f UC_1_one_dim_gen.trs UC_2_two_dims_gen.trs UC_3_gaps_gen.trs UC_4_printf_gen.trs UC_5_stride_gen.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 *.h5 make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/misc/vds' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/misc' rm -f h5repart_gentest h5clear_gentest talign repart_test clear_open_chk rm -rf .libs _libs rm -f *.o test -z "h5repart_gentest.log h5clear_gentest.log talign.log testh5repart.log testh5mkgrp.log testh5clear.log" || rm -f h5repart_gentest.log h5clear_gentest.log talign.log testh5repart.log testh5mkgrp.log testh5clear.log test -z "h5repart_gentest.trs h5clear_gentest.trs talign.trs testh5repart.trs testh5mkgrp.trs testh5clear.trs" || rm -f h5repart_gentest.trs h5clear_gentest.trs talign.trs testh5repart.trs testh5mkgrp.trs testh5clear.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 *.h5 ../testfiles/fst_family*.h5 ../testfiles/scd_family*.h5 append.log make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/misc' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/misc' Making clean in h5import make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5import' rm -f h5importtest rm -rf .libs _libs rm -f *.o test -z "h5importtest.log h5importtestutil.log" || rm -f h5importtest.log h5importtestutil.log test -z "h5importtest.trs h5importtestutil.trs" || rm -f h5importtest.trs h5importtestutil.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 *.bin make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5import' Making clean in h5repack make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5repack' rm -f h5repackgentest rm -rf .libs _libs test -z "libdynlibadd.la libdynlibvers.la" || rm -f libdynlibadd.la libdynlibvers.la rm -f ./so_locations rm -f h5repacktst testh5repack_detect_szip rm -f *.o test -z "h5repackgentest.log h5repack.log h5repack_plugin.log" || rm -f h5repackgentest.log h5repack.log h5repack_plugin.log test -z "h5repackgentest.trs h5repack.trs h5repack_plugin.trs" || rm -f h5repackgentest.trs h5repack.trs h5repack_plugin.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 *.h5 *.dat *.bin testfiles/h5diff_attr1.h5 testfiles/tfamily*.h5 make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5repack' Making clean in h5jam make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5jam' rm -f tellub h5jamgentest getub rm -rf .libs _libs rm -f *.o test -z "testh5jam.log" || rm -f testh5jam.log test -z "testh5jam.trs" || rm -f testh5jam.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 *.h5 testfiles/h5jam-*-sav testfiles/h5unjam-*-sav make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5jam' Making clean in h5copy make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5copy' rm -f h5copygentest rm -rf .libs _libs rm -f *.o test -z "h5copygentest.log testh5copy.log" || rm -f h5copygentest.log testh5copy.log test -z "h5copygentest.trs testh5copy.trs" || rm -f h5copygentest.trs testh5copy.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 *.h5 make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5copy' Making clean in h5format_convert make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5format_convert' rm -f h5fc_gentest h5fc_chk_idx test -z "" || rm -f rm -rf .libs _libs rm -f *.o test -z "h5fc_gentest.log testh5fc.log" || rm -f h5fc_gentest.log testh5fc.log test -z "h5fc_gentest.trs testh5fc.trs" || rm -f h5fc_gentest.trs testh5fc.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 *.h5 make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5format_convert' Making clean in h5stat make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5stat' rm -f h5stat_gentest test -z "" || rm -f rm -rf .libs _libs rm -f *.o test -z "h5stat_gentest.log testh5stat.log" || rm -f h5stat_gentest.log testh5stat.log test -z "h5stat_gentest.trs testh5stat.trs" || rm -f h5stat_gentest.trs testh5stat.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 *.h5 ../testfiles/fst_family*.h5 ../testfiles/scd_family*.h5 make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5stat' Making clean in perform make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/perform' rm -f h5perf_serial h5perf rm -f iopipe chunk chunk_cache overhead zip_perf perf_meta perf test -z "*.h5 *.raw *.dat x-gnuplot perftest.out" || rm -f *.h5 *.raw *.dat x-gnuplot perftest.out rm -rf .libs _libs rm -f *.o test -z "iopipe.log chunk.log chunk_cache.log overhead.log zip_perf.log perf_meta.log h5perf_serial.log" || rm -f iopipe.log chunk.log chunk_cache.log overhead.log zip_perf.log perf_meta.log h5perf_serial.log test -z "iopipe.trs chunk.trs chunk_cache.trs overhead.trs zip_perf.trs perf_meta.trs h5perf_serial.trs" || rm -f iopipe.trs chunk.trs chunk_cache.trs overhead.trs zip_perf.trs perf_meta.trs h5perf_serial.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/perform' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test' rm -rf .libs _libs test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools' rm -rf .libs _libs test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools' Making clean in . make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0' rm -rf .libs _libs rm -f *.lo if test -d ii_files; then \ rm -f -rf ii_files; \ fi make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0' Making clean in fortran make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran' Making clean in src make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran/src' test -z "libhdf5_fortran.la" || rm -f libhdf5_fortran.la rm -f ./so_locations rm -rf .libs _libs rm -f H5match_types H5_buildiface rm -f *.o test -z "H5fortran_types.F90 H5f90i_gen.h H5_gen.F90" || rm -f H5fortran_types.F90 H5f90i_gen.h H5_gen.F90 test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran/src' Making clean in test make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran/test' rm -f fortranlib_test fflush1 fflush2 fortranlib_test_1_8 fortranlib_test_F03 vol_connector rm -rf .libs _libs test -z "libh5test_fortran.la" || rm -f libh5test_fortran.la rm -f ./so_locations rm -f H5_test_buildiface rm -f *.o test -z "*.tmp" || rm -f *.tmp test -z "fortranlib_test.log fflush1.log fflush2.log fortranlib_test_1_8.log fortranlib_test_F03.log vol_connector.log" || rm -f fortranlib_test.log fflush1.log fflush2.log fortranlib_test_1_8.log fortranlib_test_F03.log vol_connector.log test -z "fortranlib_test.trs fflush1.trs fflush2.trs fortranlib_test_1_8.trs fortranlib_test_F03.trs vol_connector.trs" || rm -f fortranlib_test.trs fflush1.trs fflush2.trs fortranlib_test_1_8.trs fortranlib_test_F03.trs vol_connector.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 *.h5 *.raw make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran/test' Making clean in testpar make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran/testpar' rm -f parallel_test rm -rf .libs _libs rm -f *.o test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 parf[12].h5 make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran/testpar' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran' rm -rf .libs _libs test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran' Making clean in hl make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl' Making clean in src make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/src' test -z "libhdf5_hl.la" || rm -f libhdf5_hl.la rm -f ./so_locations rm -rf .libs _libs rm -f *.o test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/src' Making clean in test make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/test' rm -f test_lite test_image test_file_image test_table test_ds test_packet test_ld test_dset_append test_h5do_compat rm -rf .libs _libs rm -f *.o test -z "test_lite.log test_image.log test_file_image.log test_table.log test_ds.log test_packet.log test_ld.log test_dset_append.log test_h5do_compat.log" || rm -f test_lite.log test_image.log test_file_image.log test_table.log test_ds.log test_packet.log test_ld.log test_dset_append.log test_h5do_compat.log test -z "test_lite.trs test_image.trs test_file_image.trs test_table.trs test_ds.trs test_packet.trs test_ld.trs test_dset_append.trs test_h5do_compat.trs" || rm -f test_lite.trs test_image.trs test_file_image.trs test_table.trs test_ds.trs test_packet.trs test_ld.trs test_dset_append.trs test_h5do_compat.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 combine_tables[1-2].h5 test_ds[1-9].h5 test_ds10.h5 test_image[1-3].h5 file_img[1-2].h5 test_lite[1-4].h5 test_table.h5 test_packet_table.h5 test_packet_compress.h5 test_detach.h5 test_packet_table_vlen.h5 testfl_packet_table_vlen.h5 test_append.h5 h5do_compat.h5 make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/test' Making clean in tools make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/tools' Making clean in gif2h5 make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/tools/gif2h5' rm -f gif2h5 h52gif rm -rf .libs _libs rm -f h52gifgentst rm -f *.o test -z "h52giftest.log" || rm -f h52giftest.log test -z "h52giftest.trs" || rm -f h52giftest.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 *.h5 *.gif make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/tools/gif2h5' Making clean in h5watch make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/tools/h5watch' rm -f h5watch rm -rf .libs _libs rm -f swmr_check_compat_vfd h5watchgentest extend_dset rm -f *.o test -z "testh5watch.log" || rm -f testh5watch.log test -z "testh5watch.trs" || rm -f testh5watch.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 *.h5 make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/tools/h5watch' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/tools' rm -rf .libs _libs test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/tools' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/tools' Making clean in fortran make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran' Making clean in src make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran/src' test -z "libhdf5hl_fortran.la" || rm -f libhdf5hl_fortran.la rm -f ./so_locations rm -rf .libs _libs rm -f H5HL_buildiface rm -f *.o test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran/src' Making clean in test make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran/test' rm -f tstds tstlite tstimage tsttable rm -rf .libs _libs rm -f *.o test -z "tstds.log tstlite.log tstimage.log tsttable.log" || rm -f tstds.log tstlite.log tstimage.log tsttable.log test -z "tstds.trs tstlite.trs tstimage.trs tsttable.trs" || rm -f tstds.trs tstlite.trs tstimage.trs tsttable.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 dsetf[1-5].h5 f1img.h5 f[1-2]tab.h5 tstds.h5 make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran/test' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran' rm -rf .libs _libs test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl' rm -rf .libs _libs test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl' Running Executable WITHOUT threads to time it out Executing: /usr/bin/make -j40 -l96.0 stdout: Making all in src make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/src' /usr/bin/make all-am make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/src' CC H5.lo CC H5checksum.lo CC H5dbg.lo CC H5make_libsettings.o CC H5system.lo CC H5timer.lo CC H5trace.lo CC H5A.lo CC H5Abtree2.lo CC H5Adense.lo CC H5Adeprec.lo CC H5Aint.lo CC H5Atest.lo CC H5AC.lo CC H5ACdbg.lo CC H5Bcache.lo CC H5ACproxy_entry.lo CC H5B.lo CC H5B2.lo CC H5B2cache.lo CC H5Bdbg.lo CC H5B2dbg.lo CC H5B2hdr.lo CC H5B2internal.lo CC H5B2int.lo CC H5B2leaf.lo CC H5Cdbg.lo CC H5B2stat.lo CC H5B2test.lo CC H5C.lo CC H5Cepoch.lo CC H5Cimage.lo CC H5Clog.lo CC H5Clog_trace.lo CC H5Clog_json.lo CC H5Cprefetched.lo CC H5CS.lo CC H5Cquery.lo CC H5Ctag.lo CC H5Ctest.lo CC H5CX.lo CC H5D.lo CC H5Dbtree.lo CC H5Dbtree2.lo CC H5Dchunk.lo CC H5Dcompact.lo CC H5Dcontig.lo CC H5Ddbg.lo CC H5Ddeprec.lo CC H5Dearray.lo CC H5Defl.lo CC H5Dfarray.lo CC H5Dfill.lo CC H5Dint.lo CC H5Dio.lo CC H5Dlayout.lo CC H5Dnone.lo CC H5Doh.lo CC H5Dscatgath.lo CC H5Dselect.lo CC H5Dsingle.lo CC H5Dtest.lo CC H5Dvirtual.lo CC H5E.lo CC H5Edeprec.lo CC H5Eint.lo CC H5EA.lo CC H5EAcache.lo CC H5EAdbg.lo CC H5EAdblkpage.lo CC H5EAdblock.lo CC H5EAhdr.lo CC H5EAiblock.lo CC H5EAint.lo CC H5EAsblock.lo CC H5EAstat.lo CC H5EAtest.lo CC H5F.lo CC H5Faccum.lo CC H5Fcwfs.lo CC H5Fdbg.lo CC H5Fdeprec.lo CC H5Fefc.lo CC H5Ffake.lo CC H5Fint.lo CC H5Fio.lo CC H5Fmount.lo CC H5Fquery.lo CC H5Fsfile.lo CC H5Fspace.lo CC H5Fsuper.lo CC H5Fsuper_cache.lo CC H5Ftest.lo CC H5FA.lo CC H5FAcache.lo CC H5FAdbg.lo CC H5FAdblock.lo CC H5FAdblkpage.lo CC H5FAhdr.lo CC H5FAint.lo CC H5FAstat.lo CC H5FAtest.lo CC H5FD.lo CC H5FDcore.lo CC H5FDfamily.lo CC H5FDhdfs.lo CC H5FDint.lo CC H5FDlog.lo CC H5FDmulti.lo CC H5FDsec2.lo CC H5FDspace.lo CC H5FDstdio.lo CC H5FDtest.lo CC H5FL.lo CC H5FO.lo CC H5FS.lo CC H5FScache.lo CC H5FSdbg.lo CC H5FSint.lo CC H5FSsection.lo CC H5FSstat.lo CC H5FStest.lo CC H5G.lo CC H5Gbtree2.lo CC H5Gcache.lo CC H5Gcompact.lo CC H5Gdense.lo CC H5Gdeprec.lo CC H5Gent.lo CC H5Gint.lo CC H5Glink.lo CC H5Gloc.lo CC H5Gname.lo CC H5Gnode.lo CC H5Gobj.lo CC H5Goh.lo CC H5Groot.lo CC H5Gstab.lo CC H5Gtest.lo CC H5Gtraverse.lo CC H5HF.lo CC H5HFbtree2.lo CC H5HFcache.lo CC H5HFdbg.lo CC H5HFdblock.lo CC H5HFdtable.lo CC H5HFhdr.lo CC H5HFhuge.lo CC H5HFiblock.lo CC H5HFiter.lo CC H5HFman.lo CC H5HFsection.lo CC H5HFspace.lo CC H5HFstat.lo CC H5HFtest.lo CC H5HFtiny.lo CC H5HG.lo CC H5HGcache.lo CC H5HGdbg.lo CC H5HGquery.lo CC H5HL.lo CC H5HLcache.lo CC H5HLdbg.lo CC H5HLint.lo CC H5HLprfx.lo CC H5HLdblk.lo CC H5HP.lo CC H5I.lo CC H5Itest.lo CC H5L.lo CC H5Ldeprec.lo CC H5Lexternal.lo CC H5M.lo CC H5MF.lo CC H5MFaggr.lo CC H5MFdbg.lo CC H5MFsection.lo CC H5MM.lo CC H5MP.lo CC H5MPtest.lo CC H5O.lo CC H5Odeprec.lo CC H5Oainfo.lo CC H5Oalloc.lo CC H5Oattr.lo CC H5Oattribute.lo CC H5Obogus.lo CC H5Obtreek.lo CC H5Ocache.lo CC H5Ocache_image.lo CC H5Ochunk.lo CC H5Ocont.lo CC H5Ocopy.lo CC H5Ocopy_ref.lo CC H5Odbg.lo CC H5Odrvinfo.lo CC H5Odtype.lo CC H5Oefl.lo CC H5Ofill.lo CC H5Oflush.lo CC H5Ofsinfo.lo CC H5Oginfo.lo CC H5Oint.lo CC H5Olayout.lo CC H5Olinfo.lo CC H5Olink.lo CC H5Omessage.lo CC H5Omtime.lo CC H5Oname.lo CC H5Onull.lo CC H5Opline.lo CC H5Orefcount.lo CC H5Osdspace.lo CC H5Oshared.lo CC H5Oshmesg.lo CC H5Ostab.lo CC H5Otest.lo CC H5Ounknown.lo CC H5P.lo CC H5Pacpl.lo CC H5Pdapl.lo CC H5Pdcpl.lo CC H5Pdeprec.lo CC H5Pdxpl.lo CC H5Pencdec.lo CC H5Pfapl.lo CC H5Pfcpl.lo CC H5Pfmpl.lo CC H5Pgcpl.lo CC H5Pint.lo CC H5Plapl.lo CC H5Plcpl.lo CC H5Pmapl.lo CC H5Pmcpl.lo CC H5Pocpl.lo CC H5Pocpypl.lo CC H5Pstrcpl.lo CC H5Ptest.lo CC H5PB.lo CC H5PL.lo CC H5PLint.lo CC H5PLpath.lo CC H5PLplugin_cache.lo CC H5R.lo CC H5Rdeprec.lo CC H5Rint.lo CC H5UC.lo CC H5RS.lo CC H5S.lo CC H5Sall.lo CC H5Sdbg.lo CC H5Sdeprec.lo CC H5Shyper.lo CC H5Snone.lo CC H5Spoint.lo CC H5Sselect.lo CC H5Stest.lo CC H5SL.lo CC H5SM.lo CC H5SMbtree2.lo CC H5SMcache.lo CC H5SMmessage.lo CC H5SMtest.lo CC H5ST.lo CC H5T.lo CC H5Tarray.lo CC H5Tbit.lo CC H5Tcommit.lo CC H5Tcompound.lo CC H5Tconv.lo CC H5Tcset.lo CC H5Tdbg.lo CC H5Tdeprec.lo CC H5Tenum.lo CC H5Tfields.lo CC H5Tfixed.lo CC H5Tfloat.lo CC H5detect.o CC H5Tnative.lo CC H5Toffset.lo CC H5Toh.lo CC H5Topaque.lo CC H5Torder.lo CC H5Tref.lo CC H5Tpad.lo CC H5Tprecis.lo CC H5Tstrpad.lo CC H5Tvisit.lo CC H5Tvlen.lo CC H5TS.lo CC H5VL.lo CC H5VLcallback.lo CC H5VLint.lo CC H5VLnative.lo CC H5VLnative_attr.lo CC H5VLnative_blob.lo CC H5VLnative_dataset.lo CC H5VLnative_datatype.lo CC H5VLnative_file.lo CC H5VLnative_group.lo CC H5VLnative_link.lo CC H5VLnative_introspect.lo CC H5VLnative_object.lo CC H5VLnative_token.lo CC H5VLpassthru.lo CC H5VM.lo CC H5WB.lo CC H5Z.lo CC H5Zdeflate.lo CC H5Zfletcher32.lo CC H5Znbit.lo CC H5Zshuffle.lo CC H5Zscaleoffset.lo CC H5Zszip.lo CC H5Ztrans.lo CC H5mpi.lo CC H5ACmpio.lo CC H5Cmpio.lo CC H5Dmpio.lo CC H5Fmpi.lo CC H5FDmpi.lo CC H5FDmpio.lo CC H5Smpio.lo CCLD H5make_libsettings LD_LIBRARY_PATH="$LD_LIBRARY_PATH`echo | \ sed -e 's/-L/:/g' -e 's/ //g'`" \ ./H5make_libsettings H5lib_settings.c || \ (test $HDF5_Make_Ignore && echo "*** Error ignored") || \ (rm -f H5lib_settings.c ; exit 1) CC H5lib_settings.lo CCLD H5detect LD_LIBRARY_PATH="$LD_LIBRARY_PATH`echo | \ sed -e 's/-L/:/g' -e 's/ //g'`" \ ./H5detect H5Tinit.c || \ (test $HDF5_Make_Ignore && echo "*** Error ignored") || \ (rm -f H5Tinit.c ; exit 1) CC H5Tinit.lo CCLD libhdf5.la make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/src' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/src' Making all in test make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/test' CC h5test.lo CC testframe.lo CC cache_common.lo CC swmr_common.lo CC external_common.lo CC filter_plugin1_dsets.lo CC filter_plugin2_dsets.lo CC filter_plugin3_dsets.lo CC filter_plugin4_groups.lo CC null_vol_connector.lo CC testhdf5.o CC tarray.o CC tchecksum.o CC tattr.o CC tconfig.o CC tfile.o CC tgenprop.o CC th5s.o CC th5o.o CC tcoords.o CC theap.o CC tmisc.o CC tid.o CC titerate.o CC tmeta.o CC trefstr.o CC trefer.o CC trefer_deprec.o CC tsohm.o CC tskiplist.o CC tselect.o CC ttime.o CC ttst.o CC tunicode.o CC tvlstr.o CC cache.o CC tvltypes.o CC cache_image.o CC genall5.o CC cache_api.o CC cache_tagging.o CC lheap.o CC ohdr.o CC stab.o CC gheap.o CC evict_on_close.o CC farray.o CC earray.o CC btree2.o CC fheap.o CC pool.o CC accum.o CC hyperslab.o CC istore.o CC bittests.o CC dt_arith.o CC page_buffer.o CC dtypes.o CC dsets.o CC chunk_info.o CC cmpd_dset.o CC filter_fail.o CC extend.o CC direct_chunk.o CC external.o CC efc.o CC objcopy.o CC objcopy_ref.o CC links.o CC unlink.o CC twriteorder.o CC big.o CC mtime.o CC fillval.o CC mount.o CC flush1.o CC flush2.o CC app_ref.o CC enum.o CC set_extent.o CC ttsafe.o CC ttsafe_dcreate.o CC ttsafe_error.o CC ttsafe_cancel.o CC ttsafe_acreate.o CC enc_dec_plist.o CC enc_dec_plist_cross_platform.o CC getname.o CC vfd.o CC ros3.o CC s3comms.o CC hdfs.o CC ntypes.o CC dangle.o CC dtransform.o CC reserved.o CC cross_read.o CC freespace.o CC mf.o CC vds.o CC file_image.o CC unregister.o CC cache_logging.o CC cork.o CC swmr.o CC vol.o CC error_test.o CC err_compat.o CC tcheck_version.o CC testmeta.o CC accum_swmr_reader.o CC atomic_writer.o CC atomic_reader.o CC external_env.o CC links_env.o CC filenotclosed.o CC del_many_dense_attrs.o CC flushrefresh.o CC use_append_chunk.o CC use_common.o CC use_append_mchunks.o CC use_disable_mdc_flushes.o CC swmr_generator.o CC swmr_start_write.o CC swmr_reader.o CC swmr_writer.o CC swmr_remove_reader.o CC swmr_remove_writer.o CC swmr_addrem_writer.o CC swmr_sparse_reader.o CC swmr_sparse_writer.o CC swmr_check_compat_vfd.o CC vds_env.o CC vds_swmr_gen.o CC vds_swmr_reader.o CC vds_swmr_writer.o CC filter_plugin.o CC vol_plugin.o CCLD libfilter_plugin1_dsets.la CCLD libfilter_plugin2_dsets.la CCLD libfilter_plugin3_dsets.la CCLD libfilter_plugin4_groups.la CCLD libnull_vol_connector.la CCLD libh5test.la CCLD cache_api CCLD cache_image CCLD cache_tagging CCLD ohdr CCLD lheap CCLD stab CCLD gheap CCLD evict_on_close CCLD farray CCLD earray CCLD accum CCLD btree2 CCLD istore CCLD pool CCLD hyperslab CCLD page_buffer CCLD bittests CCLD dt_arith CCLD cmpd_dset CCLD chunk_info CCLD dtypes CCLD filter_fail CCLD direct_chunk CCLD extend CCLD external CCLD big CCLD objcopy_ref CCLD unlink CCLD twriteorder CCLD mtime CCLD fillval CCLD mount CCLD flush1 CCLD flush2 CCLD app_ref CCLD enum CCLD set_extent CCLD ttsafe CCLD enc_dec_plist CCLD enc_dec_plist_cross_platform CCLD getname CCLD vfd CCLD hdfs CCLD s3comms CCLD ros3 CCLD ntypes CCLD dangle CCLD dtransform CCLD reserved CCLD cross_read CCLD freespace CCLD mf CCLD file_image CCLD unregister CCLD cache_logging CCLD cork CCLD swmr CCLD vol CCLD error_test CCLD err_compat CCLD tcheck_version CCLD testmeta CCLD accum_swmr_reader CCLD atomic_writer CCLD atomic_reader CCLD external_env CCLD links_env CCLD filenotclosed CCLD del_many_dense_attrs CCLD flushrefresh CCLD use_append_chunk CCLD use_append_mchunks CCLD use_disable_mdc_flushes CCLD swmr_generator CCLD swmr_start_write CCLD swmr_reader CCLD swmr_writer CCLD swmr_remove_reader CCLD swmr_remove_writer CCLD swmr_addrem_writer CCLD swmr_sparse_reader CCLD swmr_sparse_writer CCLD swmr_check_compat_vfd CCLD vds_env CCLD vds_swmr_gen CCLD vds_swmr_reader CCLD vds_swmr_writer CCLD filter_plugin CCLD vol_plugin CCLD fheap CCLD dsets CCLD efc CCLD objcopy CCLD cache CCLD testhdf5 CCLD links CCLD vds make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/test' Making all in testpar make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/testpar' CC t_mpi.o CC t_bigio.o CC testphdf5.o CC t_file.o CC t_file_image.o CC t_dset.o CC t_mdset.o CC t_ph5basic.o CC t_coll_chunk.o CC t_span_tree.o CC t_chunk_alloc.o CC t_filter_read.o CC t_prop.o CC t_cache.o CC t_coll_md_read.o CC t_cache_image.o CC t_pshutdown.o CC t_prestart.o CC t_pread.o CC t_init_term.o CC t_shapesame.o CC t_filters_parallel.o CC t_2Gio.o CC t_pflush1.o CC t_pflush2.o CCLD t_init_term CCLD t_pflush2 CCLD t_pflush1 CCLD t_pshutdown CCLD t_prestart CCLD t_pread CCLD t_mpi CCLD t_cache_image CCLD t_bigio CCLD t_shapesame CCLD t_cache CCLD testphdf5 CCLD t_2Gio CCLD t_filters_parallel make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/testpar' Making all in bin make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/bin' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/bin' Making all in tools make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools' Making all in lib make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/lib' CC h5tools.lo CC h5tools_dump.lo CC h5tools_str.lo CC h5tools_utils.lo CC h5diff.lo CC h5diff_array.lo CC h5diff_attr.lo CC h5diff_dset.lo CC h5diff_util.lo CC h5trav.lo CC h5tools_filters.lo CC h5tools_ref.lo CC h5tools_type.lo CC io_timer.lo CCLD libh5tools.la make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/lib' Making all in src make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src' Making all in h5diff make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5diff' CC h5diff_main.o CC h5diff_common.o CC ph5diff_main.o CCLD h5diff CCLD ph5diff make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5diff' Making all in h5ls make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5ls' CC h5ls.o CCLD h5ls make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5ls' Making all in h5dump make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5dump' CC h5dump.o CC h5dump_ddl.o CC h5dump_xml.o CCLD h5dump make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5dump' Making all in misc make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/misc' CC h5debug.o CC h5repart.o CC h5mkgrp.o CC h5clear.o CCLD h5mkgrp CCLD h5clear CCLD h5repart CCLD h5debug make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/misc' Making all in h5import make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5import' CC h5import.o CCLD h5import make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5import' Making all in h5repack make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5repack' CC h5repack.lo CC h5repack_copy.lo CC h5repack_filters.lo CC h5repack_opttable.lo CC h5repack_parse.lo CC h5repack_refs.lo CC h5repack_verify.lo CC h5repack_main.o CCLD libh5repack.la CCLD h5repack make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5repack' Making all in h5jam make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5jam' CC h5jam.o CC h5unjam.o CCLD h5unjam CCLD h5jam make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5jam' Making all in h5copy make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5copy' CC h5copy.o CCLD h5copy make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5copy' Making all in h5format_convert make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5format_convert' CC h5format_convert.o CCLD h5format_convert make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5format_convert' Making all in h5stat make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5stat' CC h5stat.o CCLD h5stat make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5stat' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src' Making all in test make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test' Making all in h5diff make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5diff' CC dynlib_diff.lo CC h5diffgentest.o CCLD libdynlibdiff.la CCLD h5diffgentest make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5diff' Making all in h5ls make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5ls' CC dynlib_ls.lo CCLD libdynlibls.la make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5ls' Making all in h5dump make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5dump' CC dynlib_dump.lo CC h5dumpgentest.o CC binread.o CCLD binread CCLD libdynlibdump.la CCLD h5dumpgentest make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5dump' Making all in misc make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/misc' Making all in vds make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/misc/vds' CC UC_1_one_dim_gen.o CC UC_2_two_dims_gen.o CC UC_3_gaps_gen.o CC UC_4_printf_gen.o CC UC_5_stride_gen.o CCLD UC_3_gaps_gen CCLD UC_1_one_dim_gen CCLD UC_4_printf_gen CCLD UC_2_two_dims_gen CCLD UC_5_stride_gen make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/misc/vds' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/misc' CC h5repart_gentest.o CC h5clear_gentest.o CC talign.o CC repart_test.o CC clear_open_chk.o CCLD h5repart_gentest CCLD clear_open_chk CCLD repart_test CCLD talign CCLD h5clear_gentest make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/misc' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/misc' Making all in h5import make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5import' CC h5importtest.o CCLD h5importtest make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5import' Making all in h5repack make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5repack' CC dynlib_rpk.lo CC dynlib_vrpk.lo CC h5repacktst.o CC testh5repack_detect_szip.o CC h5repackgentest.o CCLD testh5repack_detect_szip CCLD h5repackgentest CCLD libdynlibadd.la CCLD libdynlibvers.la CCLD h5repacktst make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5repack' Making all in h5jam make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5jam' CC tellub.o CC h5jamgentest.o CC getub.o CCLD tellub CCLD getub CCLD h5jamgentest make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5jam' Making all in h5copy make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5copy' CC h5copygentest.o CCLD h5copygentest make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5copy' Making all in h5format_convert make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5format_convert' CC h5fc_gentest.o CC h5fc_chk_idx.o CCLD h5fc_chk_idx CCLD h5fc_gentest make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5format_convert' Making all in h5stat make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5stat' CC h5stat_gentest.o CCLD h5stat_gentest make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5stat' Making all in perform make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/perform' CC sio_perf.o CC sio_engine.o CC pio_perf.o CC pio_engine.o CC iopipe.o CC chunk.o CC chunk_cache.o CC overhead.o CC zip_perf.o CC perf.o CC perf_meta.o CCLD iopipe CCLD chunk CCLD overhead CCLD chunk_cache CCLD perf CCLD zip_perf CCLD perf_meta CCLD h5perf_serial CCLD h5perf make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/perform' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools' Making all in . make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0' make[1]: Nothing to be done for 'all-am'. make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0' Making all in fortran make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran' Making all in src make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran/src' CC H5match_types.o CCLD H5match_types ./H5match_types /usr/bin/make all-am make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran/src' /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c -o H5_buildiface.o H5_buildiface.F90 PPFC H5fortran_types.lo PPFC H5fortkit.lo CC H5f90kit.lo CC H5_f.lo CC H5Af.lo CC H5Df.lo CC H5Ef.lo CC H5Ff.lo CC H5Gf.lo CC H5If.lo CC H5Rf.lo CC H5Lf.lo CC H5Of.lo CC H5Pf.lo CC H5Sf.lo CC H5Tf.lo CC H5Zf.lo libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5fortran_types.F90 -fPIC -o .libs/H5fortran_types.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5fortkit.F90 -fPIC -o .libs/H5fortkit.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5fortran_types.F90 -o H5fortran_types.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5fortkit.F90 -o H5fortkit.o >/dev/null 2>&1 PPFC H5f90global.lo libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5f90global.F90 -fPIC -o .libs/H5f90global.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5f90global.F90 -o H5f90global.o >/dev/null 2>&1 PPFC H5Aff.lo PPFC H5Eff.lo PPFC H5Fff.lo PPFC H5Dff.lo PPFC H5Iff.lo PPFC H5Lff.lo PPFC H5Gff.lo PPFC H5Off.lo PPFC H5Pff.lo PPFC H5Sff.lo PPFC H5Rff.lo PPFC H5Tff.lo PPFC H5Zff.lo PPFC H5VLff.lo libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5Tff.F90 -fPIC -o .libs/H5Tff.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5Gff.F90 -fPIC -o .libs/H5Gff.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5Fff.F90 -fPIC -o .libs/H5Fff.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5VLff.F90 -fPIC -o .libs/H5VLff.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5Aff.F90 -fPIC -o .libs/H5Aff.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5Lff.F90 -fPIC -o .libs/H5Lff.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5Zff.F90 -fPIC -o .libs/H5Zff.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5Pff.F90 -fPIC -o .libs/H5Pff.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5Iff.F90 -fPIC -o .libs/H5Iff.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5Rff.F90 -fPIC -o .libs/H5Rff.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5Sff.F90 -fPIC -o .libs/H5Sff.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5Dff.F90 -fPIC -o .libs/H5Dff.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5Eff.F90 -fPIC -o .libs/H5Eff.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5Off.F90 -fPIC -o .libs/H5Off.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5Zff.F90 -o H5Zff.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5Iff.F90 -o H5Iff.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5Eff.F90 -o H5Eff.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5Rff.F90 -o H5Rff.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5Gff.F90 -o H5Gff.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5VLff.F90 -o H5VLff.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5Lff.F90 -o H5Lff.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5Fff.F90 -o H5Fff.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5Off.F90 -o H5Off.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5Aff.F90 -o H5Aff.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5Tff.F90 -o H5Tff.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5Dff.F90 -o H5Dff.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5Sff.F90 -o H5Sff.o >/dev/null 2>&1 PPFC H5_ff.lo libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5_ff.F90 -fPIC -o .libs/H5_ff.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5Pff.F90 -o H5Pff.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5_ff.F90 -o H5_ff.o >/dev/null 2>&1 FCLD H5_buildiface ./H5_buildiface PPFC H5_gen.lo libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5_gen.F90 -fPIC -o .libs/H5_gen.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5_gen.F90 -o H5_gen.o >/dev/null 2>&1 PPFC HDF5.lo libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c HDF5.F90 -fPIC -o .libs/HDF5.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c HDF5.F90 -o HDF5.o >/dev/null 2>&1 FCLD libhdf5_fortran.la make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran/src' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran/src' Making all in test make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran/test' /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o H5_test_buildiface.o H5_test_buildiface.F90 FCLD H5_test_buildiface ./H5_test_buildiface PPFC tf_gen.lo libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c tf_gen.F90 -fPIC -o .libs/tf_gen.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c tf_gen.F90 -o tf_gen.o >/dev/null 2>&1 PPFC tf.lo libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c tf.F90 -fPIC -o .libs/tf.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c tf.F90 -o tf.o >/dev/null 2>&1 CC t.lo FCLD libh5test_fortran.la /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o tH5F.o tH5F.F90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o tH5D.o tH5D.F90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o tH5R.o tH5R.F90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o tH5S.o tH5S.F90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o tH5T.o tH5T.F90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o tH5VL.o tH5VL.F90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o tH5Z.o tH5Z.F90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o tH5Sselect.o tH5Sselect.F90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o tH5P.o tH5P.F90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o tH5A.o tH5A.F90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o tH5I.o tH5I.F90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o tH5G.o tH5G.F90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o tH5E.o tH5E.F90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o tHDF5.o tHDF5.F90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o fortranlib_test.o fortranlib_test.F90 FCLD fortranlib_test /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o fflush1.o fflush1.F90 FCLD fflush1 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o fflush2.o fflush2.F90 FCLD fflush2 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o tH5O.o tH5O.F90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o tH5A_1_8.o tH5A_1_8.F90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o tH5G_1_8.o tH5G_1_8.F90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o tH5MISC_1_8.o tH5MISC_1_8.F90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o tHDF5_1_8.o tHDF5_1_8.F90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o fortranlib_test_1_8.o fortranlib_test_1_8.F90 FCLD fortranlib_test_1_8 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o tH5E_F03.o tH5E_F03.F90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o tH5F_F03.o tH5F_F03.F90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o tH5L_F03.o tH5L_F03.F90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o tH5O_F03.o tH5O_F03.F90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o tH5P_F03.o tH5P_F03.F90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o tH5T_F03.o tH5T_F03.F90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o tHDF5_F03.o tHDF5_F03.F90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o fortranlib_test_F03.o fortranlib_test_F03.F90 FCLD fortranlib_test_F03 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o vol_connector.o vol_connector.F90 FCLD vol_connector make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran/test' Making all in testpar make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran/testpar' /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/test -I../../fortran/src -I../../fortran/test -ffree-line-length-0 -O3 -c -o ptest.o ptest.f90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/test -I../../fortran/src -I../../fortran/test -ffree-line-length-0 -O3 -c -o hyper.o hyper.f90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/test -I../../fortran/src -I../../fortran/test -ffree-line-length-0 -O3 -c -o mdset.o mdset.f90 FCLD parallel_test make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran/testpar' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran' Making all in hl make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl' Making all in src make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/src' CC H5DO.lo CC H5DS.lo CC H5IM.lo CC H5LT.lo CC H5LTanalyze.lo CC H5LTparse.lo CC H5PT.lo CC H5TB.lo CC H5LD.lo CCLD libhdf5_hl.la make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/src' Making all in test make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/test' CC test_lite.o CC test_image.o CC test_file_image.o CC test_table.o CC test_ds.o CC test_packet.o CC test_packet_vlen.o CC test_ld.o CC test_dset_append.o CC test_h5do_compat.o CCLD test_h5do_compat CCLD test_file_image CCLD test_image CCLD test_table CCLD test_lite CCLD test_packet CCLD test_ld CCLD test_dset_append CCLD test_ds make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/test' Making all in tools make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/tools' Making all in gif2h5 make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/tools/gif2h5' CC gif2hdf.o CC gif2mem.o CC decompress.o CC gifread.o CC writehdf.o CC hdf2gif.o CC hdfgifwr.o CC h52gifgentst.o CCLD h52gifgentst CCLD gif2h5 CCLD h52gif make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/tools/gif2h5' Making all in h5watch make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/tools/h5watch' CC h5watch.o CC swmr_check_compat_vfd.o CC h5watchgentest.o CC extend_dset-extend_dset.o CCLD swmr_check_compat_vfd CCLD h5watchgentest CCLD extend_dset CCLD h5watch make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/tools/h5watch' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/tools' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/tools' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/tools' Making all in fortran make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran' Making all in src make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran/src' CC H5DSfc.lo CC H5LTfc.lo /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../../src -I../../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../../fortran/src -I../../../fortran/src -ffree-line-length-0 -O3 -c -o H5HL_buildiface.o H5HL_buildiface.F90 CC H5IMfc.lo CC H5IMcc.lo CC H5TBfc.lo PPFC H5DSff.lo PPFC H5LTff.lo PPFC H5TBff.lo PPFC H5IMff.lo libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../../src -I../../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../../fortran/src -I../../../fortran/src -ffree-line-length-0 -O3 -c H5IMff.F90 -fPIC -o .libs/H5IMff.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../../src -I../../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../../fortran/src -I../../../fortran/src -ffree-line-length-0 -O3 -c H5LTff.F90 -fPIC -o .libs/H5LTff.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../../src -I../../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../../fortran/src -I../../../fortran/src -ffree-line-length-0 -O3 -c H5TBff.F90 -fPIC -o .libs/H5TBff.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../../src -I../../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../../fortran/src -I../../../fortran/src -ffree-line-length-0 -O3 -c H5DSff.F90 -fPIC -o .libs/H5DSff.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../../src -I../../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../../fortran/src -I../../../fortran/src -ffree-line-length-0 -O3 -c H5DSff.F90 -o H5DSff.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../../src -I../../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../../fortran/src -I../../../fortran/src -ffree-line-length-0 -O3 -c H5IMff.F90 -o H5IMff.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../../src -I../../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../../fortran/src -I../../../fortran/src -ffree-line-length-0 -O3 -c H5TBff.F90 -o H5TBff.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../../src -I../../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../../fortran/src -I../../../fortran/src -ffree-line-length-0 -O3 -c H5LTff.F90 -o H5LTff.o >/dev/null 2>&1 FCLD H5HL_buildiface ./H5HL_buildiface PPFC H5LTff_gen.lo PPFC H5TBff_gen.lo libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../../src -I../../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../../fortran/src -I../../../fortran/src -ffree-line-length-0 -O3 -c H5TBff_gen.F90 -fPIC -o .libs/H5TBff_gen.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../../src -I../../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../../fortran/src -I../../../fortran/src -ffree-line-length-0 -O3 -c H5LTff_gen.F90 -fPIC -o .libs/H5LTff_gen.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../../src -I../../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../../fortran/src -I../../../fortran/src -ffree-line-length-0 -O3 -c H5TBff_gen.F90 -o H5TBff_gen.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../../src -I../../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../../fortran/src -I../../../fortran/src -ffree-line-length-0 -O3 -c H5LTff_gen.F90 -o H5LTff_gen.o >/dev/null 2>&1 FCLD libhdf5hl_fortran.la make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran/src' Making all in test make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran/test' /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../../src -I../../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../../fortran/src -I../../../hl/fortran/src -I../../../fortran/test -I../../../fortran/src -I../../../fortran/test -I../../../hl/fortran/src -ffree-line-length-0 -O3 -c -o tstds.o tstds.F90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../../src -I../../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../../fortran/src -I../../../hl/fortran/src -I../../../fortran/test -I../../../fortran/src -I../../../fortran/test -I../../../hl/fortran/src -ffree-line-length-0 -O3 -c -o tstlite.o tstlite.F90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../../src -I../../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../../fortran/src -I../../../hl/fortran/src -I../../../fortran/test -I../../../fortran/src -I../../../fortran/test -I../../../hl/fortran/src -ffree-line-length-0 -O3 -c -o tstimage.o tstimage.F90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../../src -I../../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../../fortran/src -I../../../hl/fortran/src -I../../../fortran/test -I../../../fortran/src -I../../../fortran/test -I../../../hl/fortran/src -ffree-line-length-0 -O3 -c -o tsttable.o tsttable.F90 FCLD tstimage FCLD tstds FCLD tsttable FCLD tstlite make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran/test' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl' =============================================================================== Running make install on HDF5; this may take several minutes =============================================================================== Running Executable WITHOUT threads to time it out Executing: /usr/bin/make install stdout: Making install in src make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/src' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/src' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib' /bin/bash ../libtool --mode=install /usr/bin/install -c libhdf5.la '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib' libtool: install: /usr/bin/install -c .libs/libhdf5.so.200.0.0 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5.so.200.0.0 libtool: install: (cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib && { ln -s -f libhdf5.so.200.0.0 libhdf5.so.200 || { rm -f libhdf5.so.200 && ln -s libhdf5.so.200.0.0 libhdf5.so.200; }; }) libtool: install: (cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib && { ln -s -f libhdf5.so.200.0.0 libhdf5.so || { rm -f libhdf5.so && ln -s libhdf5.so.200.0.0 libhdf5.so; }; }) libtool: install: /usr/bin/install -c .libs/libhdf5.lai /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5.la libtool: install: /usr/bin/install -c .libs/libhdf5.a /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5.a libtool: install: chmod 644 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5.a libtool: install: ranlib /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5.a libtool: finish: PATH="/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin:/home/dsu/Soft/PETSc/petsc-3.10.5/linux-gnu-opt/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/home/dsu/Soft/Paraview/ParaView-5.5.0/bin:/home/dsu/Soft/VisIt/visit2_13_0.linux-x86_64/bin:/home/dsu/Soft/Intel/parallel_studio_2019/bin:/home/dsu/Soft/Paraview/ParaView-5.5.0/bin:/home/dsu/Soft/VisIt/visit2_13_0.linux-x86_64/bin:/home/dsu/Soft/Intel/parallel_studio_2019/bin:/sbin" ldconfig -n /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the '-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the 'LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the 'LD_RUN_PATH' environment variable during linking - use the '-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to '/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include' /usr/bin/install -c -m 644 hdf5.h H5api_adpt.h H5overflow.h H5pubconf.h H5public.h H5version.h H5Apublic.h H5ACpublic.h H5Cpublic.h H5Dpublic.h H5Epubgen.h H5Epublic.h H5ESpublic.h H5Fpublic.h H5FDpublic.h H5FDcore.h H5FDdirect.h H5FDfamily.h H5FDhdfs.h H5FDlog.h H5FDmpi.h H5FDmpio.h H5FDmulti.h H5FDros3.h H5FDsec2.h H5FDstdio.h H5FDwindows.h H5Gpublic.h H5Ipublic.h H5Lpublic.h H5Mpublic.h H5MMpublic.h H5Opublic.h H5Ppublic.h H5PLextern.h H5PLpublic.h H5Rpublic.h H5Spublic.h H5Tpublic.h H5VLconnector.h '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include' /usr/bin/install -c -m 644 H5VLconnector_passthru.h H5VLnative.h H5VLpassthru.h H5VLpublic.h H5Zpublic.h '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib' /usr/bin/install -c -m 644 libhdf5.settings '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/src' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/src' Making install in test make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/test' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/test' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/test' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/test' Making install in testpar make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/testpar' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/testpar' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/testpar' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/testpar' Making install in bin make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/bin' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/bin' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' /usr/bin/install -c h5redeploy '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/bin' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/bin' Making install in tools make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools' Making install in lib make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/lib' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/lib' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/lib' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/lib' Making install in src make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src' Making install in h5diff make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5diff' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5diff' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' /bin/bash ../../../libtool --mode=install /usr/bin/install -c h5diff ph5diff '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' libtool: install: /usr/bin/install -c .libs/h5diff /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/h5diff libtool: install: /usr/bin/install -c .libs/ph5diff /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/ph5diff make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5diff' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5diff' Making install in h5ls make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5ls' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5ls' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' /bin/bash ../../../libtool --mode=install /usr/bin/install -c h5ls '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' libtool: install: /usr/bin/install -c .libs/h5ls /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/h5ls make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5ls' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5ls' Making install in h5dump make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5dump' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5dump' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' /bin/bash ../../../libtool --mode=install /usr/bin/install -c h5dump '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' libtool: install: /usr/bin/install -c .libs/h5dump /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/h5dump make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5dump' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5dump' Making install in misc make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/misc' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/misc' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' /bin/bash ../../../libtool --mode=install /usr/bin/install -c h5debug h5repart h5mkgrp h5clear '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' libtool: install: /usr/bin/install -c .libs/h5debug /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/h5debug libtool: install: /usr/bin/install -c .libs/h5repart /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/h5repart libtool: install: /usr/bin/install -c .libs/h5mkgrp /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/h5mkgrp libtool: install: /usr/bin/install -c .libs/h5clear /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/h5clear make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/misc' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/misc' Making install in h5import make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5import' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5import' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' /bin/bash ../../../libtool --mode=install /usr/bin/install -c h5import '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' libtool: install: /usr/bin/install -c .libs/h5import /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/h5import make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5import' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5import' Making install in h5repack make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5repack' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5repack' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' /bin/bash ../../../libtool --mode=install /usr/bin/install -c h5repack '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' libtool: install: /usr/bin/install -c .libs/h5repack /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/h5repack make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5repack' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5repack' Making install in h5jam make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5jam' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5jam' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' /bin/bash ../../../libtool --mode=install /usr/bin/install -c h5jam h5unjam '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' libtool: install: /usr/bin/install -c .libs/h5jam /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/h5jam libtool: install: /usr/bin/install -c .libs/h5unjam /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/h5unjam make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5jam' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5jam' Making install in h5copy make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5copy' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5copy' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' /bin/bash ../../../libtool --mode=install /usr/bin/install -c h5copy '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' libtool: install: /usr/bin/install -c .libs/h5copy /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/h5copy make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5copy' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5copy' Making install in h5format_convert make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5format_convert' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5format_convert' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' /bin/bash ../../../libtool --mode=install /usr/bin/install -c h5format_convert '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' libtool: install: /usr/bin/install -c .libs/h5format_convert /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/h5format_convert make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5format_convert' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5format_convert' Making install in h5stat make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5stat' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5stat' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' /bin/bash ../../../libtool --mode=install /usr/bin/install -c h5stat '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' libtool: install: /usr/bin/install -c .libs/h5stat /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/h5stat make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5stat' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5stat' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src' Making install in test make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test' Making install in h5diff make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5diff' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5diff' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5diff' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5diff' Making install in h5ls make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5ls' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5ls' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5ls' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5ls' Making install in h5dump make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5dump' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5dump' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5dump' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5dump' Making install in misc make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/misc' Making install in vds make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/misc/vds' make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/misc/vds' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/misc/vds' make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/misc/vds' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/misc' make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/misc' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/misc' make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/misc' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/misc' Making install in h5import make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5import' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5import' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5import' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5import' Making install in h5repack make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5repack' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5repack' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5repack' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5repack' Making install in h5jam make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5jam' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5jam' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5jam' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5jam' Making install in h5copy make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5copy' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5copy' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5copy' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5copy' Making install in h5format_convert make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5format_convert' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5format_convert' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5format_convert' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5format_convert' Making install in h5stat make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5stat' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5stat' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5stat' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5stat' Making install in perform make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/perform' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/perform' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' /bin/bash ../../../libtool --mode=install /usr/bin/install -c h5perf_serial h5perf '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' libtool: install: /usr/bin/install -c .libs/h5perf_serial /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/h5perf_serial libtool: install: /usr/bin/install -c .libs/h5perf /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/h5perf make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/perform' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/perform' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools' Making install in . make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0' Making install in fortran make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran' Making install in src make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran/src' /usr/bin/make install-am make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran/src' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran/src' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib' /bin/bash ../../libtool --mode=install /usr/bin/install -c libhdf5_fortran.la '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib' libtool: install: (cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran/src; /bin/bash "/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/libtool" --silent --tag FC --mode=relink /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -version-info 200:0:0 -o libhdf5_fortran.la -rpath /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib H5f90global.lo H5fortran_types.lo H5_ff.lo H5Aff.lo H5Dff.lo H5Eff.lo H5Fff.lo H5Gff.lo H5Iff.lo H5Lff.lo H5Off.lo H5Pff.lo H5Rff.lo H5Sff.lo H5Tff.lo H5VLff.lo H5Zff.lo H5_gen.lo H5fortkit.lo H5f90kit.lo H5_f.lo H5Af.lo H5Df.lo H5Ef.lo H5Ff.lo H5Gf.lo H5If.lo H5Lf.lo H5Of.lo H5Pf.lo H5Rf.lo H5Sf.lo H5Tf.lo H5Zf.lo HDF5.lo ../../src/libhdf5.la -lz -ldl -lm -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lz -lm ) libtool: install: /usr/bin/install -c .libs/libhdf5_fortran.so.200.0.0T /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5_fortran.so.200.0.0 libtool: install: (cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib && { ln -s -f libhdf5_fortran.so.200.0.0 libhdf5_fortran.so.200 || { rm -f libhdf5_fortran.so.200 && ln -s libhdf5_fortran.so.200.0.0 libhdf5_fortran.so.200; }; }) libtool: install: (cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib && { ln -s -f libhdf5_fortran.so.200.0.0 libhdf5_fortran.so || { rm -f libhdf5_fortran.so && ln -s libhdf5_fortran.so.200.0.0 libhdf5_fortran.so; }; }) libtool: install: /usr/bin/install -c .libs/libhdf5_fortran.lai /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5_fortran.la libtool: install: /usr/bin/install -c .libs/libhdf5_fortran.a /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5_fortran.a libtool: install: chmod 644 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5_fortran.a libtool: install: ranlib /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5_fortran.a libtool: finish: PATH="/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin:/home/dsu/Soft/PETSc/petsc-3.10.5/linux-gnu-opt/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/home/dsu/Soft/Paraview/ParaView-5.5.0/bin:/home/dsu/Soft/VisIt/visit2_13_0.linux-x86_64/bin:/home/dsu/Soft/Intel/parallel_studio_2019/bin:/home/dsu/Soft/Paraview/ParaView-5.5.0/bin:/home/dsu/Soft/VisIt/visit2_13_0.linux-x86_64/bin:/home/dsu/Soft/Intel/parallel_studio_2019/bin:/sbin" ldconfig -n /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the '-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the 'LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the 'LD_RUN_PATH' environment variable during linking - use the '-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to '/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- cp ../../fortran/src/H5f90i_gen.h /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include/. cp ../../fortran/src/H5f90i.h /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include/. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran/src' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran/src' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran/src' Making install in test make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran/test' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran/test' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran/test' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran/test' Making install in testpar make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran/testpar' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran/testpar' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran/testpar' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran/testpar' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran' Making install in hl make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl' Making install in src make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/src' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/src' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib' /bin/bash ../../libtool --mode=install /usr/bin/install -c libhdf5_hl.la '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib' libtool: install: (cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/src; /bin/bash "/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/libtool" --silent --tag CC --mode=relink /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -std=c99 -Wall -Wcast-qual -Wconversion -Wextra -Wfloat-equal -Wformat=2 -Winit-self -Winvalid-pch -Wmissing-include-dirs -Wno-c++-compat -Wno-format-nonliteral -Wshadow -Wundef -Wwrite-strings -pedantic -Wbad-function-cast -Wcast-align -Wdeclaration-after-statement -Wdisabled-optimization -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wold-style-definition -Wpacked -Wredundant-decls -Wstrict-prototypes -Wswitch-enum -Wswitch-default -Wunused-macros -Wunsafe-loop-optimizations -Wlogical-op -Wlarger-than=2560 -Wsync-nand -Wframe-larger-than=16384 -Wpacked-bitfield-compat -Wstrict-overflow=5 -Wjump-misses-init -Wunsuffixed-float-constants -Wdouble-promotion -Wtrampolines -Wstack-usage=8192 -Wvector-operation-performance -Wdate-time -Warray-bounds=2 -Wc99-c11-compat -ftrapv -fno-common -g -fno-omit-frame-pointer -Wno-aggregate-return -Wno-inline -Wno-missing-format-attribute -Wno-missing-noreturn -Wno-suggest-attribute=const -Wno-suggest-attribute=pure -Wno-suggest-attribute=noreturn -Wno-suggest-attribute=format -Og -fstack-protector -O3 -version-info 200:0:0 -o libhdf5_hl.la -rpath /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib H5DO.lo H5DS.lo H5IM.lo H5LT.lo H5LTanalyze.lo H5LTparse.lo H5PT.lo H5TB.lo H5LD.lo ../../src/libhdf5.la -lz -ldl -lm -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lz -lm ) libtool: install: /usr/bin/install -c .libs/libhdf5_hl.so.200.0.0T /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5_hl.so.200.0.0 libtool: install: (cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib && { ln -s -f libhdf5_hl.so.200.0.0 libhdf5_hl.so.200 || { rm -f libhdf5_hl.so.200 && ln -s libhdf5_hl.so.200.0.0 libhdf5_hl.so.200; }; }) libtool: install: (cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib && { ln -s -f libhdf5_hl.so.200.0.0 libhdf5_hl.so || { rm -f libhdf5_hl.so && ln -s libhdf5_hl.so.200.0.0 libhdf5_hl.so; }; }) libtool: install: /usr/bin/install -c .libs/libhdf5_hl.lai /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5_hl.la libtool: install: /usr/bin/install -c .libs/libhdf5_hl.a /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5_hl.a libtool: install: chmod 644 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5_hl.a libtool: install: ranlib /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5_hl.a libtool: finish: PATH="/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin:/home/dsu/Soft/PETSc/petsc-3.10.5/linux-gnu-opt/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/home/dsu/Soft/Paraview/ParaView-5.5.0/bin:/home/dsu/Soft/VisIt/visit2_13_0.linux-x86_64/bin:/home/dsu/Soft/Intel/parallel_studio_2019/bin:/home/dsu/Soft/Paraview/ParaView-5.5.0/bin:/home/dsu/Soft/VisIt/visit2_13_0.linux-x86_64/bin:/home/dsu/Soft/Intel/parallel_studio_2019/bin:/sbin" ldconfig -n /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the '-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the 'LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the 'LD_RUN_PATH' environment variable during linking - use the '-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to '/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include' /usr/bin/install -c -m 644 hdf5_hl.h H5DOpublic.h H5IMpublic.h H5LTpublic.h H5TBpublic.h H5DSpublic.h H5PTpublic.h H5LDpublic.h '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/src' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/src' Making install in test make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/test' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/test' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/test' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/test' Making install in tools make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/tools' Making install in gif2h5 make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/tools/gif2h5' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/tools/gif2h5' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' /bin/bash ../../../libtool --mode=install /usr/bin/install -c gif2h5 h52gif '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' libtool: install: /usr/bin/install -c .libs/gif2h5 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/gif2h5 libtool: install: /usr/bin/install -c .libs/h52gif /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/h52gif make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/tools/gif2h5' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/tools/gif2h5' Making install in h5watch make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/tools/h5watch' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/tools/h5watch' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' /bin/bash ../../../libtool --mode=install /usr/bin/install -c h5watch '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' libtool: install: /usr/bin/install -c .libs/h5watch /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/h5watch make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/tools/h5watch' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/tools/h5watch' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/tools' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/tools' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/tools' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/tools' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/tools' Making install in fortran make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran' Making install in src make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran/src' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran/src' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib' /bin/bash ../../../libtool --mode=install /usr/bin/install -c libhdf5hl_fortran.la '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib' libtool: install: (cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran/src; /bin/bash "/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/libtool" --silent --tag FC --mode=relink /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../../fortran/src -I../../../fortran/src -ffree-line-length-0 -O3 -version-info 200:0:0 -o libhdf5hl_fortran.la -rpath /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib H5DSfc.lo H5LTfc.lo H5IMfc.lo H5IMcc.lo H5TBfc.lo H5DSff.lo H5LTff.lo H5TBff.lo H5IMff.lo H5LTff_gen.lo H5TBff_gen.lo ../../../hl/src/libhdf5_hl.la ../../../fortran/src/libhdf5_fortran.la -lz -ldl -lm -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lz -lm ) libtool: install: /usr/bin/install -c .libs/libhdf5hl_fortran.so.200.0.0T /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5hl_fortran.so.200.0.0 libtool: install: (cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib && { ln -s -f libhdf5hl_fortran.so.200.0.0 libhdf5hl_fortran.so.200 || { rm -f libhdf5hl_fortran.so.200 && ln -s libhdf5hl_fortran.so.200.0.0 libhdf5hl_fortran.so.200; }; }) libtool: install: (cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib && { ln -s -f libhdf5hl_fortran.so.200.0.0 libhdf5hl_fortran.so || { rm -f libhdf5hl_fortran.so && ln -s libhdf5hl_fortran.so.200.0.0 libhdf5hl_fortran.so; }; }) libtool: install: /usr/bin/install -c .libs/libhdf5hl_fortran.lai /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5hl_fortran.la libtool: install: /usr/bin/install -c .libs/libhdf5hl_fortran.a /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5hl_fortran.a libtool: install: chmod 644 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5hl_fortran.a libtool: install: ranlib /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5hl_fortran.a libtool: finish: PATH="/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin:/home/dsu/Soft/PETSc/petsc-3.10.5/linux-gnu-opt/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/home/dsu/Soft/Paraview/ParaView-5.5.0/bin:/home/dsu/Soft/VisIt/visit2_13_0.linux-x86_64/bin:/home/dsu/Soft/Intel/parallel_studio_2019/bin:/home/dsu/Soft/Paraview/ParaView-5.5.0/bin:/home/dsu/Soft/VisIt/visit2_13_0.linux-x86_64/bin:/home/dsu/Soft/Intel/parallel_studio_2019/bin:/sbin" ldconfig -n /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the '-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the 'LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the 'LD_RUN_PATH' environment variable during linking - use the '-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to '/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- /usr/bin/make install-exec-hook make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran/src' cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib && \ if test -f libhdf5hl_fortran.a -a \ ! -f libhdf5_hl_fortran.a; then \ ln -s libhdf5hl_fortran.a libhdf5_hl_fortran.a; \ fi; \ if test -f libhdf5hl_fortran.so -a \ ! -f libhdf5_hl_fortran.so; then \ ln -s libhdf5hl_fortran.so libhdf5_hl_fortran.so; \ fi; make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran/src' make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran/src' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran/src' Making install in test make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran/test' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran/test' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran/test' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran/test' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl' for d in examples fortran hl; do \ (cd $d && /usr/bin/make install-examples) || exit 1; \ done make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/examples' ../bin/mkdirs /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/c make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/examples' make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran/examples' ../../bin/mkdirs /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/fortran make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran/examples' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran' make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl' for d in examples fortran; do \ (cd $d && /usr/bin/make install-examples) || exit 1; \ done make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/examples' ../../bin/mkdirs /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/hl/c make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/examples' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran/examples' ../../../bin/mkdirs /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/hl/fortran make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran/examples' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl' ********Output of running make on HDF5 follows ******* checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether /usr/bin/make sets $(MAKE)... yes checking whether /usr/bin/make supports nested variables... yes checking whether /usr/bin/make supports nested variables... (cached) yes checking whether to enable maintainer-specific portions of Makefiles... no checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking shell variables initial values... done checking if basename works... yes checking if xargs works... yes checking for cached host... none checking for config x86_64-unknown-linux-gnu... no checking for config x86_64-unknown-linux-gnu... no checking for config unknown-linux-gnu... no checking for config unknown-linux-gnu... no checking for config x86_64-linux-gnu... no checking for config x86_64-linux-gnu... no checking for config x86_64-unknown... no checking for config linux-gnu... found compiler '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc' is GNU gcc-5.4.0 compiler '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90' is GNU gfortran-5.4.0 compiler '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx' is GNU g++-5.4.0 checking for config ./config/site-specific/host-andromeda... no checking build mode... debug checking for gcc... /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc accepts -g... yes checking for /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc option to accept ISO C89... none needed checking whether /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc understands -c and -o together... yes checking for style of include used by /usr/bin/make... GNU checking dependency style of /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc... gcc3 checking if unsupported combinations of configure options are allowed... no checking how to run the C preprocessor... /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for off_t... yes checking for size_t... yes checking for ssize_t... yes checking for ptrdiff_t... yes checking whether byte ordering is bigendian... no checking size of char... 1 checking size of short... 2 checking size of int... 4 checking size of unsigned... 4 checking size of long... 8 checking size of long long... 8 checking size of __int64... 0 checking size of float... 4 checking size of double... 8 checking size of long double... 16 checking size of __float128... 16 checking size of _Quad... 0 checking quadmath.h usability... yes checking quadmath.h presence... yes checking for quadmath.h... yes checking maximum decimal precision for C... 33 checking if Fortran interface enabled... yes checking whether we are using the GNU Fortran compiler... yes checking whether /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 accepts -g... yes checking for Fortran flag to compile .f90 files... none checking whether we are using the GNU Fortran compiler... (cached) yes checking whether /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 accepts -g... (cached) yes checking what /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 does with modules... module.mod checking how /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 finds modules... -I checking if Fortran compiler version compatible with Fortran 2003 HDF... yes checking how to get verbose linking output from /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90... -v checking for Fortran libraries of /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90... -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/5/../../.. -lz -lgfortran -lm -lmpifort -lmpi -lquadmath checking for dummy main to link with Fortran libraries... none checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore checking if Fortran compiler supports intrinsic SIZEOF... yes checking if Fortran compiler supports intrinsic C_SIZEOF... yes checking if Fortran compiler supports intrinsic STORAGE_SIZE... yes checking if Fortran compiler supports intrinsic module ISO_FORTRAN_ENV... yes checking for Number of Fortran INTEGER KINDs... 5 checking for Fortran INTEGER KINDs... {1,2,4,8,16} checking for Fortran REAL KINDs... {4,8,10,16} checking for Fortran REALs maximum decimal precision... 33 checking sizeof of native KINDS... checking for Number of Fortran INTEGER KINDs... 5 checking for Fortran INTEGER KINDs... {1,2,4,8,16} checking for Fortran REAL KINDs... {4,8,10,16} checking for Fortran REALs maximum decimal precision... 33 checking sizeof of available INTEGER KINDs... {1,2,4,8,16} checking sizeof of available REAL KINDs... {4,8,16,16} checking if Fortran compiler supports intrinsic C_LONG_DOUBLE... yes checking if Fortran C_LONG_DOUBLE is different from C_DOUBLE... yes checking for Fortran interoperable KINDS with C... {4,8,10,16} checking whether we are using the GNU C++ compiler... yes checking whether /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx accepts -g... yes checking dependency style of /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx... gcc3 checking how to run the C++ preprocessor... /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx -E checking if c++ interface enabled... no checking if the high-level library is enabled... yes checking whether /usr/bin/make sets $(MAKE)... (cached) yes checking for tr... /usr/bin/tr checking if srcdir= and time commands work together... yes checking if Java JNI interface enabled... no checking if shared Fortran libraries are supported... yes checking if building tests is disabled... checking if building tools is disabled... checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc supports -fno-rtti -fno-exceptions... no checking for /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc option to produce PIC... -fPIC -DPIC checking if /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc PIC flag -fPIC -DPIC works... yes checking if /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc static flag -static works... yes checking if /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc supports -c -o file.o... yes checking if /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc supports -c -o file.o... (cached) yes checking whether the /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for shl_load... no checking for shl_load in -ldld... no checking for dlopen... no checking for dlopen in -ldl... yes checking whether a program can dlopen itself... yes checking whether a statically linked program can dlopen itself... no checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 option to produce PIC... -fPIC checking if /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 PIC flag -fPIC works... yes checking if /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 static flag -static works... yes checking if /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 supports -c -o file.o... yes checking if /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 supports -c -o file.o... (cached) yes checking whether the /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if we should install only statically linked executables... no checking if -Wl,-rpath should be used to link shared libs in nondefault directories... yes checking for ceil in -lm... yes checking for dlopen in -ldl... (cached) yes checking for ANSI C header files... (cached) yes checking whether time.h and sys/time.h may both be included... yes checking sys/resource.h usability... yes checking sys/resource.h presence... yes checking for sys/resource.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking sys/ioctl.h usability... yes checking sys/ioctl.h presence... yes checking for sys/ioctl.h... yes checking for sys/stat.h... (cached) yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking for sys/types.h... (cached) yes checking sys/file.h usability... yes checking sys/file.h presence... yes checking for sys/file.h... yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking setjmp.h usability... yes checking setjmp.h presence... yes checking for setjmp.h... yes checking features.h usability... yes checking features.h presence... yes checking for features.h... yes checking dirent.h usability... yes checking dirent.h presence... yes checking for dirent.h... yes checking for stdint.h... (cached) yes checking stdbool.h usability... yes checking stdbool.h presence... yes checking for stdbool.h... yes checking mach/mach_time.h usability... no checking mach/mach_time.h presence... no checking for mach/mach_time.h... no checking io.h usability... no checking io.h presence... no checking for io.h... no checking winsock2.h usability... no checking winsock2.h presence... no checking for winsock2.h... no checking sys/timeb.h usability... yes checking sys/timeb.h presence... yes checking for sys/timeb.h... yes checking if libtool needs -no-undefined flag to build shared libraries... no checking for _FILE_OFFSET_BITS value needed for large files... no checking size of int8_t... 1 checking size of uint8_t... 1 checking size of int_least8_t... 1 checking size of uint_least8_t... 1 checking size of int_fast8_t... 1 checking size of uint_fast8_t... 1 checking size of int16_t... 2 checking size of uint16_t... 2 checking size of int_least16_t... 2 checking size of uint_least16_t... 2 checking size of int_fast16_t... 8 checking size of uint_fast16_t... 8 checking size of int32_t... 4 checking size of uint32_t... 4 checking size of int_least32_t... 4 checking size of uint_least32_t... 4 checking size of int_fast32_t... 8 checking size of uint_fast32_t... 8 checking size of int64_t... 8 checking size of uint64_t... 8 checking size of int_least64_t... 8 checking size of uint_least64_t... 8 checking size of int_fast64_t... 8 checking size of uint_fast64_t... 8 checking size of size_t... 8 checking size of ssize_t... 8 checking size of ptrdiff_t... 8 checking size of off_t... 8 checking size of bool... 1 checking size of time_t... 8 checking if dev_t is scalar... yes checking for dmalloc library... suppressed checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking for compress2 in -lz... yes checking for compress2... yes checking for szlib... suppressed checking for thread safe support... no checking whether CLOCK_MONOTONIC is declared... yes checking for tm_gmtoff in struct tm... yes checking for global timezone variable... yes checking for st_blocks in struct stat... no checking for _getvideoconfig... no checking for gettextinfo... no checking for GetConsoleScreenBufferInfo... no checking for getpwuid... yes checking for _scrsize... no checking for ioctl... yes checking for struct videoconfig... no checking for struct text_info... no checking for TIOCGWINSZ... yes checking for TIOCGETD... yes checking for library containing clock_gettime... none required checking for alarm... yes checking for clock_gettime... yes checking for difftime... yes checking for fcntl... yes checking for flock... yes checking for fork... yes checking for frexpf... yes checking for frexpl... yes checking for gethostname... yes checking for getrusage... yes checking for gettimeofday... yes checking for lstat... yes checking for rand_r... yes checking for random... yes checking for setsysinfo... no checking for signal... yes checking for longjmp... yes checking for setjmp... yes checking for siglongjmp... yes checking for sigsetjmp... no checking for sigprocmask... yes checking for snprintf... yes checking for srandom... yes checking for strdup... yes checking for symlink... yes checking for system... yes checking for strtoll... yes checking for strtoull... yes checking for tmpfile... yes checking for asprintf... yes checking for vasprintf... yes checking for vsnprintf... yes checking for waitpid... yes checking for roundf... yes checking for lroundf... yes checking for llroundf... yes checking for round... yes checking for lround... yes checking for llround... yes checking for an ANSI C-conforming const... yes checking if the compiler understands __inline__... yes checking if the compiler understands __inline... yes checking if the compiler understands inline... yes checking for __attribute__ extension... yes checking for __func__ extension... yes checking for __FUNCTION__ extension... yes checking for C99 designated initialization support... yes checking how to print long long... %ld and %lu checking enable debugging symbols... yes checking enable asserts... yes checking enable developer warnings... no checking profiling... no checking optimization level... debug checking for internal debug output... AC,B2,CX,D,F,HL,I,O,S,ST,T,Z checking whether function stack tracking is enabled... no checking for API tracing... yes checking whether a memory checking tool will be used... no checking whether internal memory allocation sanity checking is used... yes checking for parallel support files... provided by compiler checking whether a simple MPI-IO C program can be linked... yes checking whether a simple MPI-IO Fortran program can be linked... yes checking prefix for running on one processor... checking prefix for running in parallel... mpiexec -n $${NPROCS:=6} checking for MPI_Comm_c2f and MPI_Comm_f2c functions... yes checking for MPI_Info_c2f and MPI_Info_f2c functions... yes checking for instrumented library... yes checking for MPE... suppressed checking for MPI_Mprobe and MPI_Imrecv functions... yes checking for MPI_Get_elements_x and MPI_Type_size_x functions... yes checking if the map API (H5M) is enabled... no checking whether O_DIRECT is declared... yes checking for posix_memalign... yes checking if the direct I/O virtual file driver (VFD) is enabled... no checking if the Read-Only S3 virtual file driver (VFD) is enabled... no checking for libhdfs... suppressed checking for custom examples path definition... ${prefix}/share/hdf5_examples checking for custom plugin default path definition... /usr/local/hdf5/lib/plugin checking whether exception handling functions is checked during data conversions... yes checking whether data accuracy is guaranteed during data conversions... yes checking if the machine has window style path name... no checking if using special algorithm to convert long double to (unsigned) long values... no checking if using special algorithm to convert (unsigned) long to long double values... no checking if correctly converting long double to (unsigned) long long values... yes checking if correctly converting (unsigned) long long to long double values... yes checking if the system is IBM ppc64le and cannot correctly convert some long double values... no checking additional programs should be built... no checking if deprecated public symbols are available... yes checking which version of public symbols to use by default... v112 checking whether to perform strict file format checks... yes checking for pread... yes checking for pwrite... yes checking whether to use pread/pwrite instead of read/write in certain VFDs... yes checking whether to have library information embedded in the executables... yes checking if alignment restrictions are strictly enforced... no configure: creating ./config.lt config.lt: creating libtool checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating src/libhdf5.settings config.status: creating Makefile config.status: creating src/Makefile config.status: creating test/Makefile config.status: creating test/H5srcdir_str.h config.status: creating test/testabort_fail.sh config.status: creating test/testcheck_version.sh config.status: creating test/testerror.sh config.status: creating test/testexternal_env.sh config.status: creating test/testflushrefresh.sh config.status: creating test/testlibinfo.sh config.status: creating test/testlinks_env.sh config.status: creating test/testswmr.sh config.status: creating test/testvds_env.sh config.status: creating test/testvdsswmr.sh config.status: creating test/test_filter_plugin.sh config.status: creating test/test_usecases.sh config.status: creating test/test_vol_plugin.sh config.status: creating testpar/Makefile config.status: creating testpar/testpflush.sh config.status: creating tools/Makefile config.status: creating tools/lib/Makefile config.status: creating tools/libtest/Makefile config.status: creating tools/src/Makefile config.status: creating tools/src/h5dump/Makefile config.status: creating tools/src/h5import/Makefile config.status: creating tools/src/h5diff/Makefile config.status: creating tools/src/h5jam/Makefile config.status: creating tools/src/h5repack/Makefile config.status: creating tools/src/h5ls/Makefile config.status: creating tools/src/h5copy/Makefile config.status: creating tools/src/misc/Makefile config.status: creating tools/src/h5stat/Makefile config.status: creating tools/test/Makefile config.status: creating tools/test/h5dump/Makefile config.status: creating tools/test/h5dump/h5dump_plugin.sh config.status: creating tools/test/h5dump/testh5dump.sh config.status: creating tools/test/h5dump/testh5dumppbits.sh config.status: creating tools/test/h5dump/testh5dumpvds.sh config.status: creating tools/test/h5dump/testh5dumpxml.sh config.status: creating tools/test/h5ls/Makefile config.status: creating tools/test/h5ls/h5ls_plugin.sh config.status: creating tools/test/h5ls/testh5ls.sh config.status: creating tools/test/h5ls/testh5lsvds.sh config.status: creating tools/test/h5import/Makefile config.status: creating tools/test/h5import/h5importtestutil.sh config.status: creating tools/test/h5diff/Makefile config.status: creating tools/test/h5diff/h5diff_plugin.sh config.status: creating tools/test/h5diff/testh5diff.sh config.status: creating tools/test/h5diff/testph5diff.sh config.status: creating tools/src/h5format_convert/Makefile config.status: creating tools/test/h5format_convert/Makefile config.status: creating tools/test/h5format_convert/testh5fc.sh config.status: creating tools/test/h5jam/Makefile config.status: creating tools/test/h5jam/testh5jam.sh config.status: creating tools/test/h5repack/Makefile config.status: creating tools/test/h5repack/h5repack.sh config.status: creating tools/test/h5repack/h5repack_plugin.sh config.status: creating tools/test/h5copy/Makefile config.status: creating tools/test/h5copy/testh5copy.sh config.status: creating tools/test/misc/Makefile config.status: creating tools/test/misc/testh5clear.sh config.status: creating tools/test/misc/testh5mkgrp.sh config.status: creating tools/test/misc/testh5repart.sh config.status: creating tools/test/misc/vds/Makefile config.status: creating tools/test/h5stat/Makefile config.status: creating tools/test/h5stat/testh5stat.sh config.status: creating tools/test/perform/Makefile config.status: creating examples/Makefile config.status: creating examples/run-c-ex.sh config.status: creating examples/testh5cc.sh config.status: creating bin/h5cc config.status: creating bin/Makefile config.status: creating c++/Makefile config.status: creating c++/src/Makefile config.status: creating c++/src/h5c++ config.status: creating c++/test/Makefile config.status: creating c++/test/H5srcdir_str.h config.status: creating c++/examples/Makefile config.status: creating c++/examples/run-c++-ex.sh config.status: creating c++/examples/testh5c++.sh config.status: creating fortran/Makefile config.status: creating fortran/src/h5fc config.status: creating fortran/src/Makefile config.status: creating fortran/src/H5fort_type_defines.h config.status: creating fortran/test/Makefile config.status: creating fortran/testpar/Makefile config.status: creating fortran/examples/Makefile config.status: creating fortran/examples/run-fortran-ex.sh config.status: creating fortran/examples/testh5fc.sh config.status: creating java/Makefile config.status: creating java/src/Makefile config.status: creating java/src/jni/Makefile config.status: creating java/test/Makefile config.status: creating java/test/junit.sh config.status: creating java/examples/Makefile config.status: creating java/examples/intro/Makefile config.status: creating java/examples/intro/JavaIntroExample.sh config.status: creating java/examples/datasets/Makefile config.status: creating java/examples/datasets/JavaDatasetExample.sh config.status: creating java/examples/datatypes/Makefile config.status: creating java/examples/datatypes/JavaDatatypeExample.sh config.status: creating java/examples/groups/Makefile config.status: creating java/examples/groups/JavaGroupExample.sh config.status: creating hl/Makefile config.status: creating hl/src/Makefile config.status: creating hl/test/Makefile config.status: creating hl/test/H5srcdir_str.h config.status: creating hl/tools/Makefile config.status: creating hl/tools/gif2h5/Makefile config.status: creating hl/tools/gif2h5/h52giftest.sh config.status: creating hl/tools/h5watch/Makefile config.status: creating hl/tools/h5watch/testh5watch.sh config.status: creating hl/examples/Makefile config.status: creating hl/examples/run-hlc-ex.sh config.status: creating hl/c++/Makefile config.status: creating hl/c++/src/Makefile config.status: creating hl/c++/test/Makefile config.status: creating hl/c++/examples/Makefile config.status: creating hl/c++/examples/run-hlc++-ex.sh config.status: creating hl/fortran/Makefile config.status: creating hl/fortran/src/Makefile config.status: creating hl/fortran/test/Makefile config.status: creating hl/fortran/examples/Makefile config.status: creating hl/fortran/examples/run-hlfortran-ex.sh config.status: creating src/H5config.h config.status: creating fortran/src/H5config_f.inc config.status: executing pubconf commands creating src/H5pubconf.h Post process src/libhdf5.settings config.status: executing depfiles commands config.status: executing libtool commands config.status: executing .classes commands SUMMARY OF THE HDF5 CONFIGURATION ================================= General Information: ------------------- HDF5 Version: 1.12.0 Configured on: Wed Jun 3 10:25:01 PDT 2020 Configured by: dsu@andromeda Host system: x86_64-unknown-linux-gnu Uname information: Linux andromeda 4.15.0-46-generic #49~16.04.1-Ubuntu SMP Tue Feb 12 17:45:24 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux Byte sex: little-endian Installation point: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt Compiling Options: ------------------ Build Mode: debug Debugging Symbols: yes Asserts: yes Profiling: no Optimization Level: debug Linking Options: ---------------- Libraries: static, shared Statically Linked Executables: LDFLAGS: H5_LDFLAGS: AM_LDFLAGS: Extra libraries: -lz -ldl -lm -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lz -lm Archiver: /usr/bin/ar AR_FLAGS: cr Ranlib: ranlib Languages: ---------- C: yes C Compiler: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc ( MPICH version 3.3.2 Configured with: ../src/configure -v --with-pkgversion='Ubuntu 5.4.0-6ubuntu1~16.04.12' --with-bugurl=file:///usr/share/doc/gcc-5/README.Bugs --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-5 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx --enable-plugin --with-system-zlib --disable-browser-plugin --enable-java-awt=gtk --enable-gtk-cairo --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-5-amd64/jre --enable-java-home --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-5-amd64 --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-5-amd64 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --enable-objc-gc --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu built with gcc version 5.4.0 20160609 (Ubuntu 5.4.0-6ubuntu1~16.04.12)) CPPFLAGS: -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include H5_CPPFLAGS: -D_GNU_SOURCE -D_POSIX_C_SOURCE=200809L -UNDEBUG -DH5AC_DEBUG -DH5B2_DEBUG -DH5CX_DEBUG -DH5D_DEBUG -DH5F_DEBUG -DH5HL_DEBUG -DH5I_DEBUG -DH5O_DEBUG -DH5S_DEBUG -DH5ST_DEBUG -DH5T_DEBUG -DH5Z_DEBUG -DH5_DEBUG_API AM_CPPFLAGS: C Flags: -fstack-protector -O3 H5 C Flags: -std=c99 -Wall -Wcast-qual -Wconversion -Wextra -Wfloat-equal -Wformat=2 -Winit-self -Winvalid-pch -Wmissing-include-dirs -Wno-c++-compat -Wno-format-nonliteral -Wshadow -Wundef -Wwrite-strings -pedantic -Wbad-function-cast -Wcast-align -Wdeclaration-after-statement -Wdisabled-optimization -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wold-style-definition -Wpacked -Wredundant-decls -Wstrict-prototypes -Wswitch-enum -Wswitch-default -Wunused-macros -Wunsafe-loop-optimizations -Wlogical-op -Wlarger-than=2560 -Wsync-nand -Wframe-larger-than=16384 -Wpacked-bitfield-compat -Wstrict-overflow=5 -Wjump-misses-init -Wunsuffixed-float-constants -Wdouble-promotion -Wtrampolines -Wstack-usage=8192 -Wvector-operation-performance -Wdate-time -Warray-bounds=2 -Wc99-c11-compat -ftrapv -fno-common -g -fno-omit-frame-pointer -Wno-aggregate-return -Wno-inline -Wno-missing-format-attribute -Wno-missing-noreturn -Wno-suggest-attribute=const -Wno-suggest-attribute=pure -Wno-suggest-attribute=noreturn -Wno-suggest-attribute=format -Og AM C Flags: Shared C Library: yes Static C Library: yes Fortran: yes Fortran Compiler: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 ( MPICH version 3.3.2 Configured with: ../src/configure -v --with-pkgversion='Ubuntu 5.4.0-6ubuntu1~16.04.12' --with-bugurl=file:///usr/share/doc/gcc-5/README.Bugs --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-5 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx --enable-plugin --with-system-zlib --disable-browser-plugin --enable-java-awt=gtk --enable-gtk-cairo --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-5-amd64/jre --enable-java-home --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-5-amd64 --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-5-amd64 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --enable-objc-gc --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu built with gcc version 5.4.0 20160609 (Ubuntu 5.4.0-6ubuntu1~16.04.12)) Fortran Flags: -ffree-line-length-0 -O3 H5 Fortran Flags: -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og AM Fortran Flags: Shared Fortran Library: yes Static Fortran Library: yes C++: no Java: no Features: --------- Parallel HDF5: yes Parallel Filtered Dataset Writes: yes Large Parallel I/O: yes High-level library: yes Build HDF5 Tests: yes Build HDF5 Tools: yes Threadsafety: no Default API mapping: v112 With deprecated public symbols: yes I/O filters (external): deflate(zlib) MPE: Map (H5M) API: no Direct VFD: no (Read-Only) S3 VFD: no (Read-Only) HDFS VFD: no dmalloc: no Packages w/ extra debug output: AC,B2,CX,D,F,HL,I,O,S,ST,T,Z API tracing: yes Using memory checker: no Memory allocation sanity checks: yes Function stack tracing: no Strict file format checks: yes Optimization instrumentation: yesMaking clean in src make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/src' test -z "libhdf5.la" || rm -f libhdf5.la rm -f ./so_locations rm -rf .libs _libs rm -f H5detect H5make_libsettings rm -f *.o test -z "H5Tinit.c H5lib_settings.c" || rm -f H5Tinit.c H5lib_settings.c test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/src' Making clean in test make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/test' rm -f testhdf5 cache cache_api cache_image cache_tagging lheap ohdr stab gheap evict_on_close farray earray btree2 fheap pool accum hyperslab istore bittests dt_arith page_buffer dtypes dsets chunk_info cmpd_dset filter_fail extend direct_chunk external efc objcopy objcopy_ref links unlink twriteorder big mtime fillval mount flush1 flush2 app_ref enum set_extent ttsafe enc_dec_plist enc_dec_plist_cross_platform getname vfd ros3 s3comms hdfs ntypes dangle dtransform reserved cross_read freespace mf vds file_image unregister cache_logging cork swmr vol error_test err_compat tcheck_version testmeta accum_swmr_reader atomic_writer atomic_reader external_env links_env filenotclosed del_many_dense_attrs flushrefresh use_append_chunk use_append_mchunks use_disable_mdc_flushes swmr_generator swmr_start_write swmr_reader swmr_writer swmr_remove_reader swmr_remove_writer swmr_addrem_writer swmr_sparse_reader swmr_sparse_writer swmr_check_compat_vfd vds_env vds_swmr_gen vds_swmr_reader vds_swmr_writer filter_plugin vol_plugin rm -rf .libs _libs test -z "libh5test.la libfilter_plugin1_dsets.la libfilter_plugin2_dsets.la libfilter_plugin3_dsets.la libfilter_plugin4_groups.la libnull_vol_connector.la" || rm -f libh5test.la libfilter_plugin1_dsets.la libfilter_plugin2_dsets.la libfilter_plugin3_dsets.la libfilter_plugin4_groups.la libnull_vol_connector.la rm -f ./so_locations rm -f *.o test -z "testhdf5.log cache.log cache_api.log cache_image.log cache_tagging.log lheap.log ohdr.log stab.log gheap.log evict_on_close.log farray.log earray.log btree2.log fheap.log pool.log accum.log hyperslab.log istore.log bittests.log dt_arith.log page_buffer.log dtypes.log dsets.log chunk_info.log cmpd_dset.log filter_fail.log extend.log direct_chunk.log external.log efc.log objcopy.log objcopy_ref.log links.log unlink.log twriteorder.log big.log mtime.log fillval.log mount.log flush1.log flush2.log app_ref.log enum.log set_extent.log ttsafe.log enc_dec_plist.log enc_dec_plist_cross_platform.log getname.log vfd.log ros3.log s3comms.log hdfs.log ntypes.log dangle.log dtransform.log reserved.log cross_read.log freespace.log mf.log vds.log file_image.log unregister.log cache_logging.log cork.log swmr.log vol.log testerror.log testlibinfo.log testcheck_version.log testlinks_env.log testexternal_env.log testswmr.log testvds_env.log testvdsswmr.log testflushrefresh.log test_usecases.log testabort_fail.log test_filter_plugin.log test_vol_plugin.log" || rm -f testhdf5.log cache.log cache_api.log cache_image.log cache_tagging.log lheap.log ohdr.log stab.log gheap.log evict_on_close.log farray.log earray.log btree2.log fheap.log pool.log accum.log hyperslab.log istore.log bittests.log dt_arith.log page_buffer.log dtypes.log dsets.log chunk_info.log cmpd_dset.log filter_fail.log extend.log direct_chunk.log external.log efc.log objcopy.log objcopy_ref.log links.log unlink.log twriteorder.log big.log mtime.log fillval.log mount.log flush1.log flush2.log app_ref.log enum.log set_extent.log ttsafe.log enc_dec_plist.log enc_dec_plist_cross_platform.log getname.log vfd.log ros3.log s3comms.log hdfs.log ntypes.log dangle.log dtransform.log reserved.log cross_read.log freespace.log mf.log vds.log file_image.log unregister.log cache_logging.log cork.log swmr.log vol.log testerror.log testlibinfo.log testcheck_version.log testlinks_env.log testexternal_env.log testswmr.log testvds_env.log testvdsswmr.log testflushrefresh.log test_usecases.log testabort_fail.log test_filter_plugin.log test_vol_plugin.log test -z "testhdf5.trs cache.trs cache_api.trs cache_image.trs cache_tagging.trs lheap.trs ohdr.trs stab.trs gheap.trs evict_on_close.trs farray.trs earray.trs btree2.trs fheap.trs pool.trs accum.trs hyperslab.trs istore.trs bittests.trs dt_arith.trs page_buffer.trs dtypes.trs dsets.trs chunk_info.trs cmpd_dset.trs filter_fail.trs extend.trs direct_chunk.trs external.trs efc.trs objcopy.trs objcopy_ref.trs links.trs unlink.trs twriteorder.trs big.trs mtime.trs fillval.trs mount.trs flush1.trs flush2.trs app_ref.trs enum.trs set_extent.trs ttsafe.trs enc_dec_plist.trs enc_dec_plist_cross_platform.trs getname.trs vfd.trs ros3.trs s3comms.trs hdfs.trs ntypes.trs dangle.trs dtransform.trs reserved.trs cross_read.trs freespace.trs mf.trs vds.trs file_image.trs unregister.trs cache_logging.trs cork.trs swmr.trs vol.trs testerror.trs testlibinfo.trs testcheck_version.trs testlinks_env.trs testexternal_env.trs testswmr.trs testvds_env.trs testvdsswmr.trs testflushrefresh.trs test_usecases.trs testabort_fail.trs test_filter_plugin.trs test_vol_plugin.trs" || rm -f testhdf5.trs cache.trs cache_api.trs cache_image.trs cache_tagging.trs lheap.trs ohdr.trs stab.trs gheap.trs evict_on_close.trs farray.trs earray.trs btree2.trs fheap.trs pool.trs accum.trs hyperslab.trs istore.trs bittests.trs dt_arith.trs page_buffer.trs dtypes.trs dsets.trs chunk_info.trs cmpd_dset.trs filter_fail.trs extend.trs direct_chunk.trs external.trs efc.trs objcopy.trs objcopy_ref.trs links.trs unlink.trs twriteorder.trs big.trs mtime.trs fillval.trs mount.trs flush1.trs flush2.trs app_ref.trs enum.trs set_extent.trs ttsafe.trs enc_dec_plist.trs enc_dec_plist_cross_platform.trs getname.trs vfd.trs ros3.trs s3comms.trs hdfs.trs ntypes.trs dangle.trs dtransform.trs reserved.trs cross_read.trs freespace.trs mf.trs vds.trs file_image.trs unregister.trs cache_logging.trs cork.trs swmr.trs vol.trs testerror.trs testlibinfo.trs testcheck_version.trs testlinks_env.trs testexternal_env.trs testswmr.trs testvds_env.trs testvdsswmr.trs testflushrefresh.trs test_usecases.trs testabort_fail.trs test_filter_plugin.trs test_vol_plugin.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 accum.h5 cmpd_dset.h5 compact_dataset.h5 dataset.h5 dset_offset.h5 max_compact_dataset.h5 simple.h5 set_local.h5 random_chunks.h5 huge_chunks.h5 chunk_cache.h5 big_chunk.h5 chunk_fast.h5 chunk_expand.h5 chunk_fixed.h5 copy_dcpl_newfile.h5 partial_chunks.h5 layout_extend.h5 zero_chunk.h5 chunk_single.h5 swmr_non_latest.h5 earray_hdr_fd.h5 farray_hdr_fd.h5 bt2_hdr_fd.h5 storage_size.h5 dls_01_strings.h5 extend.h5 istore.h5 extlinks*.h5 frspace.h5 links*.h5 sys_file1 tfile[1-7].h5 th5s[1-4].h5 lheap.h5 fheap.h5 ohdr.h5 stab.h5 extern_[1-5].h5 extern_[1-4][rw].raw gheap[0-4].h5 ohdr_min_a.h5 ohdr_min_b.h5 min_dset_ohdr_testfile.h5 dt_arith[1-2] links.h5 links[0-6]*.h5 extlinks[0-15].h5 tmp tmp_links tmp2_links tmp_links_env tmp_vds_env big.data big[0-9][0-9][0-9][0-9][0-9].h5 stdio.h5 sec2.h5 dtypes[0-9].h5 dtypes1[0].h5 dt_arith[1-2].h5 tattr.h5 tselect.h5 mtime.h5 unlink.h5 unicode.h5 coord.h5 fillval_[0-9].h5 fillval.raw mount_[0-9].h5 testmeta.h5 ttime.h5 trefer[1-3].h5 trefer_*.h5 tvltypes.h5 tvlstr.h5 tvlstr2.h5 twriteorder.dat flush.h5 flush-swmr.h5 noflush.h5 noflush-swmr.h5 flush_extend.h5 flush_extend-swmr.h5 noflush_extend.h5 noflush_extend-swmr.h5 enum1.h5 titerate.h5 ttsafe.h5 tarray1.h5 tgenprop.h5 tmisc[0-9]*.h5 set_extent[1-5].h5 ext[12].bin getname.h5 getname[1-3].h5 sec2_file.h5 direct_file.h5 family_file000[0-3][0-9].h5 new_family_v16_000[0-3][0-9].h5 multi_file-[rs].h5 core_file filter_plugin.h5 new_move_[ab].h5 ntypes.h5 dangle.h5 error_test.h5 err_compat.h5 dtransform.h5 test_filters.h5 get_file_name.h5 tstint[1-2].h5 unlink_chunked.h5 btree2.h5 btree2_tmp.h5 objcopy_src.h5 objcopy_dst.h5 objcopy_ext.dat trefer1.h5 trefer2.h5 app_ref.h5 farray.h5 farray_tmp.h5 earray.h5 earray_tmp.h5 efc[0-5].h5 log_vfd_out.log log_ros3_out.log log_s3comms_out.log new_multi_file_v16-r.h5 new_multi_file_v16-s.h5 split_get_file_image_test-m.h5 split_get_file_image_test-r.h5 file_image_core_test.h5.copy unregister_filter_1.h5 unregister_filter_2.h5 vds_virt.h5 vds_dapl.h5 vds_src_[0-1].h5 swmr_data.h5 use_use_append_chunk.h5 use_append_mchunks.h5 use_disable_mdc_flushes.h5 flushrefresh.h5 flushrefresh_VERIFICATION_START flushrefresh_VERIFICATION_CHECKPOINT1 flushrefresh_VERIFICATION_CHECKPOINT2 flushrefresh_VERIFICATION_DONE atomic_data accum_swmr_big.h5 ohdr_swmr.h5 test_swmr*.h5 cache_logging.h5 cache_logging.out vds_swmr.h5 vds_swmr_src_*.h5 swmr[0-2].h5 swmr_writer.out swmr_writer.log.* swmr_reader.out.* swmr_reader.log.* tbogus.h5.copy cache_image_test.h5 direct_chunk.h5 native_vol_test.h5 make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/test' Making clean in testpar make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/testpar' rm -f t_mpi t_bigio testphdf5 t_cache t_cache_image t_pread t_pshutdown t_prestart t_init_term t_shapesame t_filters_parallel t_2Gio t_pflush1 t_pflush2 rm -rf .libs _libs rm -f *.o test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 MPItest.h5 Para*.h5 bigio_test.h5 CacheTestDummy.h5 ShapeSameTest.h5 shutdown.h5 after_mpi_fin.h5 go make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/testpar' Making clean in bin make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/bin' test -z "h5redeploy" || rm -f h5redeploy rm -rf .libs _libs test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/bin' Making clean in tools make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools' Making clean in lib make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/lib' rm -rf .libs _libs test -z "libh5tools.la" || rm -f libh5tools.la rm -f ./so_locations rm -f *.o test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/lib' Making clean in src make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src' Making clean in h5diff make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5diff' rm -f h5diff ph5diff rm -rf .libs _libs rm -f *.o test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5diff' Making clean in h5ls make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5ls' rm -f h5ls rm -rf .libs _libs rm -f *.o test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5ls' Making clean in h5dump make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5dump' rm -f h5dump rm -rf .libs _libs rm -f *.o test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5dump' Making clean in misc make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/misc' rm -f h5debug h5repart h5mkgrp h5clear rm -rf .libs _libs rm -f *.o test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/misc' Making clean in h5import make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5import' rm -f h5import rm -rf .libs _libs rm -f *.o test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5import' Making clean in h5repack make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5repack' rm -f h5repack rm -rf .libs _libs test -z "libh5repack.la" || rm -f libh5repack.la rm -f ./so_locations rm -f *.o test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5repack' Making clean in h5jam make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5jam' rm -f h5jam h5unjam rm -rf .libs _libs rm -f *.o test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5jam' Making clean in h5copy make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5copy' rm -f h5copy rm -rf .libs _libs rm -f *.o test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 *.h5 make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5copy' Making clean in h5format_convert make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5format_convert' rm -f h5format_convert test -z "" || rm -f rm -rf .libs _libs rm -f *.o test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5format_convert' Making clean in h5stat make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5stat' rm -f h5stat test -z "" || rm -f rm -rf .libs _libs rm -f *.o test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5stat' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src' rm -rf .libs _libs test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src' Making clean in test make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test' Making clean in h5diff make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5diff' rm -f h5diffgentest rm -rf .libs _libs test -z "libdynlibdiff.la" || rm -f libdynlibdiff.la rm -f ./so_locations rm -f *.o test -z "h5diffgentest.log testh5diff.log h5diff_plugin.log" || rm -f h5diffgentest.log testh5diff.log h5diff_plugin.log test -z "h5diffgentest.trs testh5diff.trs h5diff_plugin.trs" || rm -f h5diffgentest.trs testh5diff.trs h5diff_plugin.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 *.h5 expect_sorted actual_sorted make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5diff' Making clean in h5ls make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5ls' rm -rf .libs _libs test -z "libdynlibls.la" || rm -f libdynlibls.la rm -f ./so_locations rm -f *.o test -z "testh5ls.log testh5lsvds.log h5ls_plugin.log" || rm -f testh5ls.log testh5lsvds.log h5ls_plugin.log test -z "testh5ls.trs testh5lsvds.trs h5ls_plugin.trs" || rm -f testh5ls.trs testh5lsvds.trs h5ls_plugin.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5ls' Making clean in h5dump make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5dump' rm -f h5dumpgentest binread rm -rf .libs _libs test -z "libdynlibdump.la" || rm -f libdynlibdump.la rm -f ./so_locations rm -f *.o test -z "h5dumpgentest.log testh5dump.log testh5dumppbits.log testh5dumpvds.log testh5dumpxml.log h5dump_plugin.log" || rm -f h5dumpgentest.log testh5dump.log testh5dumppbits.log testh5dumpvds.log testh5dumpxml.log h5dump_plugin.log test -z "h5dumpgentest.trs testh5dump.trs testh5dumppbits.trs testh5dumpvds.trs testh5dumpxml.trs h5dump_plugin.trs" || rm -f h5dumpgentest.trs testh5dump.trs testh5dumppbits.trs testh5dumpvds.trs testh5dumpxml.trs h5dump_plugin.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 *.h5 *.bin make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5dump' Making clean in misc make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/misc' Making clean in vds make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/misc/vds' rm -f UC_1_one_dim_gen UC_2_two_dims_gen UC_3_gaps_gen UC_4_printf_gen UC_5_stride_gen rm -rf .libs _libs rm -f *.o test -z "UC_1_one_dim_gen.log UC_2_two_dims_gen.log UC_3_gaps_gen.log UC_4_printf_gen.log UC_5_stride_gen.log" || rm -f UC_1_one_dim_gen.log UC_2_two_dims_gen.log UC_3_gaps_gen.log UC_4_printf_gen.log UC_5_stride_gen.log test -z "UC_1_one_dim_gen.trs UC_2_two_dims_gen.trs UC_3_gaps_gen.trs UC_4_printf_gen.trs UC_5_stride_gen.trs" || rm -f UC_1_one_dim_gen.trs UC_2_two_dims_gen.trs UC_3_gaps_gen.trs UC_4_printf_gen.trs UC_5_stride_gen.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 *.h5 make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/misc/vds' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/misc' rm -f h5repart_gentest h5clear_gentest talign repart_test clear_open_chk rm -rf .libs _libs rm -f *.o test -z "h5repart_gentest.log h5clear_gentest.log talign.log testh5repart.log testh5mkgrp.log testh5clear.log" || rm -f h5repart_gentest.log h5clear_gentest.log talign.log testh5repart.log testh5mkgrp.log testh5clear.log test -z "h5repart_gentest.trs h5clear_gentest.trs talign.trs testh5repart.trs testh5mkgrp.trs testh5clear.trs" || rm -f h5repart_gentest.trs h5clear_gentest.trs talign.trs testh5repart.trs testh5mkgrp.trs testh5clear.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 *.h5 ../testfiles/fst_family*.h5 ../testfiles/scd_family*.h5 append.log make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/misc' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/misc' Making clean in h5import make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5import' rm -f h5importtest rm -rf .libs _libs rm -f *.o test -z "h5importtest.log h5importtestutil.log" || rm -f h5importtest.log h5importtestutil.log test -z "h5importtest.trs h5importtestutil.trs" || rm -f h5importtest.trs h5importtestutil.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 *.bin make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5import' Making clean in h5repack make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5repack' rm -f h5repackgentest rm -rf .libs _libs test -z "libdynlibadd.la libdynlibvers.la" || rm -f libdynlibadd.la libdynlibvers.la rm -f ./so_locations rm -f h5repacktst testh5repack_detect_szip rm -f *.o test -z "h5repackgentest.log h5repack.log h5repack_plugin.log" || rm -f h5repackgentest.log h5repack.log h5repack_plugin.log test -z "h5repackgentest.trs h5repack.trs h5repack_plugin.trs" || rm -f h5repackgentest.trs h5repack.trs h5repack_plugin.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 *.h5 *.dat *.bin testfiles/h5diff_attr1.h5 testfiles/tfamily*.h5 make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5repack' Making clean in h5jam make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5jam' rm -f tellub h5jamgentest getub rm -rf .libs _libs rm -f *.o test -z "testh5jam.log" || rm -f testh5jam.log test -z "testh5jam.trs" || rm -f testh5jam.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 *.h5 testfiles/h5jam-*-sav testfiles/h5unjam-*-sav make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5jam' Making clean in h5copy make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5copy' rm -f h5copygentest rm -rf .libs _libs rm -f *.o test -z "h5copygentest.log testh5copy.log" || rm -f h5copygentest.log testh5copy.log test -z "h5copygentest.trs testh5copy.trs" || rm -f h5copygentest.trs testh5copy.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 *.h5 make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5copy' Making clean in h5format_convert make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5format_convert' rm -f h5fc_gentest h5fc_chk_idx test -z "" || rm -f rm -rf .libs _libs rm -f *.o test -z "h5fc_gentest.log testh5fc.log" || rm -f h5fc_gentest.log testh5fc.log test -z "h5fc_gentest.trs testh5fc.trs" || rm -f h5fc_gentest.trs testh5fc.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 *.h5 make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5format_convert' Making clean in h5stat make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5stat' rm -f h5stat_gentest test -z "" || rm -f rm -rf .libs _libs rm -f *.o test -z "h5stat_gentest.log testh5stat.log" || rm -f h5stat_gentest.log testh5stat.log test -z "h5stat_gentest.trs testh5stat.trs" || rm -f h5stat_gentest.trs testh5stat.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 *.h5 ../testfiles/fst_family*.h5 ../testfiles/scd_family*.h5 make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5stat' Making clean in perform make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/perform' rm -f h5perf_serial h5perf rm -f iopipe chunk chunk_cache overhead zip_perf perf_meta perf test -z "*.h5 *.raw *.dat x-gnuplot perftest.out" || rm -f *.h5 *.raw *.dat x-gnuplot perftest.out rm -rf .libs _libs rm -f *.o test -z "iopipe.log chunk.log chunk_cache.log overhead.log zip_perf.log perf_meta.log h5perf_serial.log" || rm -f iopipe.log chunk.log chunk_cache.log overhead.log zip_perf.log perf_meta.log h5perf_serial.log test -z "iopipe.trs chunk.trs chunk_cache.trs overhead.trs zip_perf.trs perf_meta.trs h5perf_serial.trs" || rm -f iopipe.trs chunk.trs chunk_cache.trs overhead.trs zip_perf.trs perf_meta.trs h5perf_serial.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/perform' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test' rm -rf .libs _libs test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools' rm -rf .libs _libs test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools' Making clean in . make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0' rm -rf .libs _libs rm -f *.lo if test -d ii_files; then \ rm -f -rf ii_files; \ fi make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0' Making clean in fortran make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran' Making clean in src make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran/src' test -z "libhdf5_fortran.la" || rm -f libhdf5_fortran.la rm -f ./so_locations rm -rf .libs _libs rm -f H5match_types H5_buildiface rm -f *.o test -z "H5fortran_types.F90 H5f90i_gen.h H5_gen.F90" || rm -f H5fortran_types.F90 H5f90i_gen.h H5_gen.F90 test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran/src' Making clean in test make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran/test' rm -f fortranlib_test fflush1 fflush2 fortranlib_test_1_8 fortranlib_test_F03 vol_connector rm -rf .libs _libs test -z "libh5test_fortran.la" || rm -f libh5test_fortran.la rm -f ./so_locations rm -f H5_test_buildiface rm -f *.o test -z "*.tmp" || rm -f *.tmp test -z "fortranlib_test.log fflush1.log fflush2.log fortranlib_test_1_8.log fortranlib_test_F03.log vol_connector.log" || rm -f fortranlib_test.log fflush1.log fflush2.log fortranlib_test_1_8.log fortranlib_test_F03.log vol_connector.log test -z "fortranlib_test.trs fflush1.trs fflush2.trs fortranlib_test_1_8.trs fortranlib_test_F03.trs vol_connector.trs" || rm -f fortranlib_test.trs fflush1.trs fflush2.trs fortranlib_test_1_8.trs fortranlib_test_F03.trs vol_connector.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 *.h5 *.raw make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran/test' Making clean in testpar make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran/testpar' rm -f parallel_test rm -rf .libs _libs rm -f *.o test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 parf[12].h5 make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran/testpar' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran' rm -rf .libs _libs test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran' Making clean in hl make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl' Making clean in src make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/src' test -z "libhdf5_hl.la" || rm -f libhdf5_hl.la rm -f ./so_locations rm -rf .libs _libs rm -f *.o test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/src' Making clean in test make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/test' rm -f test_lite test_image test_file_image test_table test_ds test_packet test_ld test_dset_append test_h5do_compat rm -rf .libs _libs rm -f *.o test -z "test_lite.log test_image.log test_file_image.log test_table.log test_ds.log test_packet.log test_ld.log test_dset_append.log test_h5do_compat.log" || rm -f test_lite.log test_image.log test_file_image.log test_table.log test_ds.log test_packet.log test_ld.log test_dset_append.log test_h5do_compat.log test -z "test_lite.trs test_image.trs test_file_image.trs test_table.trs test_ds.trs test_packet.trs test_ld.trs test_dset_append.trs test_h5do_compat.trs" || rm -f test_lite.trs test_image.trs test_file_image.trs test_table.trs test_ds.trs test_packet.trs test_ld.trs test_dset_append.trs test_h5do_compat.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 combine_tables[1-2].h5 test_ds[1-9].h5 test_ds10.h5 test_image[1-3].h5 file_img[1-2].h5 test_lite[1-4].h5 test_table.h5 test_packet_table.h5 test_packet_compress.h5 test_detach.h5 test_packet_table_vlen.h5 testfl_packet_table_vlen.h5 test_append.h5 h5do_compat.h5 make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/test' Making clean in tools make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/tools' Making clean in gif2h5 make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/tools/gif2h5' rm -f gif2h5 h52gif rm -rf .libs _libs rm -f h52gifgentst rm -f *.o test -z "h52giftest.log" || rm -f h52giftest.log test -z "h52giftest.trs" || rm -f h52giftest.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 *.h5 *.gif make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/tools/gif2h5' Making clean in h5watch make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/tools/h5watch' rm -f h5watch rm -rf .libs _libs rm -f swmr_check_compat_vfd h5watchgentest extend_dset rm -f *.o test -z "testh5watch.log" || rm -f testh5watch.log test -z "testh5watch.trs" || rm -f testh5watch.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 *.h5 make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/tools/h5watch' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/tools' rm -rf .libs _libs test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/tools' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/tools' Making clean in fortran make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran' Making clean in src make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran/src' test -z "libhdf5hl_fortran.la" || rm -f libhdf5hl_fortran.la rm -f ./so_locations rm -rf .libs _libs rm -f H5HL_buildiface rm -f *.o test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran/src' Making clean in test make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran/test' rm -f tstds tstlite tstimage tsttable rm -rf .libs _libs rm -f *.o test -z "tstds.log tstlite.log tstimage.log tsttable.log" || rm -f tstds.log tstlite.log tstimage.log tsttable.log test -z "tstds.trs tstlite.trs tstimage.trs tsttable.trs" || rm -f tstds.trs tstlite.trs tstimage.trs tsttable.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 dsetf[1-5].h5 f1img.h5 f[1-2]tab.h5 tstds.h5 make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran/test' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran' rm -rf .libs _libs test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl' rm -rf .libs _libs test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.clog2 make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl'Making all in src make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/src' /usr/bin/make all-am make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/src' CC H5.lo CC H5checksum.lo CC H5dbg.lo CC H5make_libsettings.o CC H5system.lo CC H5timer.lo CC H5trace.lo CC H5A.lo CC H5Abtree2.lo CC H5Adense.lo CC H5Adeprec.lo CC H5Aint.lo CC H5Atest.lo CC H5AC.lo CC H5ACdbg.lo CC H5Bcache.lo CC H5ACproxy_entry.lo CC H5B.lo CC H5B2.lo CC H5B2cache.lo CC H5Bdbg.lo CC H5B2dbg.lo CC H5B2hdr.lo CC H5B2internal.lo CC H5B2int.lo CC H5B2leaf.lo CC H5Cdbg.lo CC H5B2stat.lo CC H5B2test.lo CC H5C.lo CC H5Cepoch.lo CC H5Cimage.lo CC H5Clog.lo CC H5Clog_trace.lo CC H5Clog_json.lo CC H5Cprefetched.lo CC H5CS.lo CC H5Cquery.lo CC H5Ctag.lo CC H5Ctest.lo CC H5CX.lo CC H5D.lo CC H5Dbtree.lo CC H5Dbtree2.lo CC H5Dchunk.lo CC H5Dcompact.lo CC H5Dcontig.lo CC H5Ddbg.lo CC H5Ddeprec.lo CC H5Dearray.lo CC H5Defl.lo CC H5Dfarray.lo CC H5Dfill.lo CC H5Dint.lo CC H5Dio.lo CC H5Dlayout.lo CC H5Dnone.lo CC H5Doh.lo CC H5Dscatgath.lo CC H5Dselect.lo CC H5Dsingle.lo CC H5Dtest.lo CC H5Dvirtual.lo CC H5E.lo CC H5Edeprec.lo CC H5Eint.lo CC H5EA.lo CC H5EAcache.lo CC H5EAdbg.lo CC H5EAdblkpage.lo CC H5EAdblock.lo CC H5EAhdr.lo CC H5EAiblock.lo CC H5EAint.lo CC H5EAsblock.lo CC H5EAstat.lo CC H5EAtest.lo CC H5F.lo CC H5Faccum.lo CC H5Fcwfs.lo CC H5Fdbg.lo CC H5Fdeprec.lo CC H5Fefc.lo CC H5Ffake.lo CC H5Fint.lo CC H5Fio.lo CC H5Fmount.lo CC H5Fquery.lo CC H5Fsfile.lo CC H5Fspace.lo CC H5Fsuper.lo CC H5Fsuper_cache.lo CC H5Ftest.lo CC H5FA.lo CC H5FAcache.lo CC H5FAdbg.lo CC H5FAdblock.lo CC H5FAdblkpage.lo CC H5FAhdr.lo CC H5FAint.lo CC H5FAstat.lo CC H5FAtest.lo CC H5FD.lo CC H5FDcore.lo CC H5FDfamily.lo CC H5FDhdfs.lo CC H5FDint.lo CC H5FDlog.lo CC H5FDmulti.lo CC H5FDsec2.lo CC H5FDspace.lo CC H5FDstdio.lo CC H5FDtest.lo CC H5FL.lo CC H5FO.lo CC H5FS.lo CC H5FScache.lo CC H5FSdbg.lo CC H5FSint.lo CC H5FSsection.lo CC H5FSstat.lo CC H5FStest.lo CC H5G.lo CC H5Gbtree2.lo CC H5Gcache.lo CC H5Gcompact.lo CC H5Gdense.lo CC H5Gdeprec.lo CC H5Gent.lo CC H5Gint.lo CC H5Glink.lo CC H5Gloc.lo CC H5Gname.lo CC H5Gnode.lo CC H5Gobj.lo CC H5Goh.lo CC H5Groot.lo CC H5Gstab.lo CC H5Gtest.lo CC H5Gtraverse.lo CC H5HF.lo CC H5HFbtree2.lo CC H5HFcache.lo CC H5HFdbg.lo CC H5HFdblock.lo CC H5HFdtable.lo CC H5HFhdr.lo CC H5HFhuge.lo CC H5HFiblock.lo CC H5HFiter.lo CC H5HFman.lo CC H5HFsection.lo CC H5HFspace.lo CC H5HFstat.lo CC H5HFtest.lo CC H5HFtiny.lo CC H5HG.lo CC H5HGcache.lo CC H5HGdbg.lo CC H5HGquery.lo CC H5HL.lo CC H5HLcache.lo CC H5HLdbg.lo CC H5HLint.lo CC H5HLprfx.lo CC H5HLdblk.lo CC H5HP.lo CC H5I.lo CC H5Itest.lo CC H5L.lo CC H5Ldeprec.lo CC H5Lexternal.lo CC H5M.lo CC H5MF.lo CC H5MFaggr.lo CC H5MFdbg.lo CC H5MFsection.lo CC H5MM.lo CC H5MP.lo CC H5MPtest.lo CC H5O.lo CC H5Odeprec.lo CC H5Oainfo.lo CC H5Oalloc.lo CC H5Oattr.lo CC H5Oattribute.lo CC H5Obogus.lo CC H5Obtreek.lo CC H5Ocache.lo CC H5Ocache_image.lo CC H5Ochunk.lo CC H5Ocont.lo CC H5Ocopy.lo CC H5Ocopy_ref.lo CC H5Odbg.lo CC H5Odrvinfo.lo CC H5Odtype.lo CC H5Oefl.lo CC H5Ofill.lo CC H5Oflush.lo CC H5Ofsinfo.lo CC H5Oginfo.lo CC H5Oint.lo CC H5Olayout.lo CC H5Olinfo.lo CC H5Olink.lo CC H5Omessage.lo CC H5Omtime.lo CC H5Oname.lo CC H5Onull.lo CC H5Opline.lo CC H5Orefcount.lo CC H5Osdspace.lo CC H5Oshared.lo CC H5Oshmesg.lo CC H5Ostab.lo CC H5Otest.lo CC H5Ounknown.lo CC H5P.lo CC H5Pacpl.lo CC H5Pdapl.lo CC H5Pdcpl.lo CC H5Pdeprec.lo CC H5Pdxpl.lo CC H5Pencdec.lo CC H5Pfapl.lo CC H5Pfcpl.lo CC H5Pfmpl.lo CC H5Pgcpl.lo CC H5Pint.lo CC H5Plapl.lo CC H5Plcpl.lo CC H5Pmapl.lo CC H5Pmcpl.lo CC H5Pocpl.lo CC H5Pocpypl.lo CC H5Pstrcpl.lo CC H5Ptest.lo CC H5PB.lo CC H5PL.lo CC H5PLint.lo CC H5PLpath.lo CC H5PLplugin_cache.lo CC H5R.lo CC H5Rdeprec.lo CC H5Rint.lo CC H5UC.lo CC H5RS.lo CC H5S.lo CC H5Sall.lo CC H5Sdbg.lo CC H5Sdeprec.lo CC H5Shyper.lo CC H5Snone.lo CC H5Spoint.lo CC H5Sselect.lo CC H5Stest.lo CC H5SL.lo CC H5SM.lo CC H5SMbtree2.lo CC H5SMcache.lo CC H5SMmessage.lo CC H5SMtest.lo CC H5ST.lo CC H5T.lo CC H5Tarray.lo CC H5Tbit.lo CC H5Tcommit.lo CC H5Tcompound.lo CC H5Tconv.lo CC H5Tcset.lo CC H5Tdbg.lo CC H5Tdeprec.lo CC H5Tenum.lo CC H5Tfields.lo CC H5Tfixed.lo CC H5Tfloat.lo CC H5detect.o CC H5Tnative.lo CC H5Toffset.lo CC H5Toh.lo CC H5Topaque.lo CC H5Torder.lo CC H5Tref.lo CC H5Tpad.lo CC H5Tprecis.lo CC H5Tstrpad.lo CC H5Tvisit.lo CC H5Tvlen.lo CC H5TS.lo CC H5VL.lo CC H5VLcallback.lo CC H5VLint.lo CC H5VLnative.lo CC H5VLnative_attr.lo CC H5VLnative_blob.lo CC H5VLnative_dataset.lo CC H5VLnative_datatype.lo CC H5VLnative_file.lo CC H5VLnative_group.lo CC H5VLnative_link.lo CC H5VLnative_introspect.lo CC H5VLnative_object.lo CC H5VLnative_token.lo CC H5VLpassthru.lo CC H5VM.lo CC H5WB.lo CC H5Z.lo CC H5Zdeflate.lo CC H5Zfletcher32.lo CC H5Znbit.lo CC H5Zshuffle.lo CC H5Zscaleoffset.lo CC H5Zszip.lo CC H5Ztrans.lo CC H5mpi.lo CC H5ACmpio.lo CC H5Cmpio.lo CC H5Dmpio.lo CC H5Fmpi.lo CC H5FDmpi.lo CC H5FDmpio.lo CC H5Smpio.lo CCLD H5make_libsettings LD_LIBRARY_PATH="$LD_LIBRARY_PATH`echo | \ sed -e 's/-L/:/g' -e 's/ //g'`" \ ./H5make_libsettings H5lib_settings.c || \ (test $HDF5_Make_Ignore && echo "*** Error ignored") || \ (rm -f H5lib_settings.c ; exit 1) CC H5lib_settings.lo CCLD H5detect LD_LIBRARY_PATH="$LD_LIBRARY_PATH`echo | \ sed -e 's/-L/:/g' -e 's/ //g'`" \ ./H5detect H5Tinit.c || \ (test $HDF5_Make_Ignore && echo "*** Error ignored") || \ (rm -f H5Tinit.c ; exit 1) CC H5Tinit.lo CCLD libhdf5.la make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/src' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/src' Making all in test make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/test' CC h5test.lo CC testframe.lo CC cache_common.lo CC swmr_common.lo CC external_common.lo CC filter_plugin1_dsets.lo CC filter_plugin2_dsets.lo CC filter_plugin3_dsets.lo CC filter_plugin4_groups.lo CC null_vol_connector.lo CC testhdf5.o CC tarray.o CC tchecksum.o CC tattr.o CC tconfig.o CC tfile.o CC tgenprop.o CC th5s.o CC th5o.o CC tcoords.o CC theap.o CC tmisc.o CC tid.o CC titerate.o CC tmeta.o CC trefstr.o CC trefer.o CC trefer_deprec.o CC tsohm.o CC tskiplist.o CC tselect.o CC ttime.o CC ttst.o CC tunicode.o CC tvlstr.o CC cache.o CC tvltypes.o CC cache_image.o CC genall5.o CC cache_api.o CC cache_tagging.o CC lheap.o CC ohdr.o CC stab.o CC gheap.o CC evict_on_close.o CC farray.o CC earray.o CC btree2.o CC fheap.o CC pool.o CC accum.o CC hyperslab.o CC istore.o CC bittests.o CC dt_arith.o CC page_buffer.o CC dtypes.o CC dsets.o CC chunk_info.o CC cmpd_dset.o CC filter_fail.o CC extend.o CC direct_chunk.o CC external.o CC efc.o CC objcopy.o CC objcopy_ref.o CC links.o CC unlink.o CC twriteorder.o CC big.o CC mtime.o CC fillval.o CC mount.o CC flush1.o CC flush2.o CC app_ref.o CC enum.o CC set_extent.o CC ttsafe.o CC ttsafe_dcreate.o CC ttsafe_error.o CC ttsafe_cancel.o CC ttsafe_acreate.o CC enc_dec_plist.o CC enc_dec_plist_cross_platform.o CC getname.o CC vfd.o CC ros3.o CC s3comms.o CC hdfs.o CC ntypes.o CC dangle.o CC dtransform.o CC reserved.o CC cross_read.o CC freespace.o CC mf.o CC vds.o CC file_image.o CC unregister.o CC cache_logging.o CC cork.o CC swmr.o CC vol.o CC error_test.o CC err_compat.o CC tcheck_version.o CC testmeta.o CC accum_swmr_reader.o CC atomic_writer.o CC atomic_reader.o CC external_env.o CC links_env.o CC filenotclosed.o CC del_many_dense_attrs.o CC flushrefresh.o CC use_append_chunk.o CC use_common.o CC use_append_mchunks.o CC use_disable_mdc_flushes.o CC swmr_generator.o CC swmr_start_write.o CC swmr_reader.o CC swmr_writer.o CC swmr_remove_reader.o CC swmr_remove_writer.o CC swmr_addrem_writer.o CC swmr_sparse_reader.o CC swmr_sparse_writer.o CC swmr_check_compat_vfd.o CC vds_env.o CC vds_swmr_gen.o CC vds_swmr_reader.o CC vds_swmr_writer.o CC filter_plugin.o CC vol_plugin.o CCLD libfilter_plugin1_dsets.la CCLD libfilter_plugin2_dsets.la CCLD libfilter_plugin3_dsets.la CCLD libfilter_plugin4_groups.la CCLD libnull_vol_connector.la CCLD libh5test.la CCLD cache_api CCLD cache_image CCLD cache_tagging CCLD ohdr CCLD lheap CCLD stab CCLD gheap CCLD evict_on_close CCLD farray CCLD earray CCLD accum CCLD btree2 CCLD istore CCLD pool CCLD hyperslab CCLD page_buffer CCLD bittests CCLD dt_arith CCLD cmpd_dset CCLD chunk_info CCLD dtypes CCLD filter_fail CCLD direct_chunk CCLD extend CCLD external CCLD big CCLD objcopy_ref CCLD unlink CCLD twriteorder CCLD mtime CCLD fillval CCLD mount CCLD flush1 CCLD flush2 CCLD app_ref CCLD enum CCLD set_extent CCLD ttsafe CCLD enc_dec_plist CCLD enc_dec_plist_cross_platform CCLD getname CCLD vfd CCLD hdfs CCLD s3comms CCLD ros3 CCLD ntypes CCLD dangle CCLD dtransform CCLD reserved CCLD cross_read CCLD freespace CCLD mf CCLD file_image CCLD unregister CCLD cache_logging CCLD cork CCLD swmr CCLD vol CCLD error_test CCLD err_compat CCLD tcheck_version CCLD testmeta CCLD accum_swmr_reader CCLD atomic_writer CCLD atomic_reader CCLD external_env CCLD links_env CCLD filenotclosed CCLD del_many_dense_attrs CCLD flushrefresh CCLD use_append_chunk CCLD use_append_mchunks CCLD use_disable_mdc_flushes CCLD swmr_generator CCLD swmr_start_write CCLD swmr_reader CCLD swmr_writer CCLD swmr_remove_reader CCLD swmr_remove_writer CCLD swmr_addrem_writer CCLD swmr_sparse_reader CCLD swmr_sparse_writer CCLD swmr_check_compat_vfd CCLD vds_env CCLD vds_swmr_gen CCLD vds_swmr_reader CCLD vds_swmr_writer CCLD filter_plugin CCLD vol_plugin CCLD fheap CCLD dsets CCLD efc CCLD objcopy CCLD cache CCLD testhdf5 CCLD links CCLD vds make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/test' Making all in testpar make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/testpar' CC t_mpi.o CC t_bigio.o CC testphdf5.o CC t_file.o CC t_file_image.o CC t_dset.o CC t_mdset.o CC t_ph5basic.o CC t_coll_chunk.o CC t_span_tree.o CC t_chunk_alloc.o CC t_filter_read.o CC t_prop.o CC t_cache.o CC t_coll_md_read.o CC t_cache_image.o CC t_pshutdown.o CC t_prestart.o CC t_pread.o CC t_init_term.o CC t_shapesame.o CC t_filters_parallel.o CC t_2Gio.o CC t_pflush1.o CC t_pflush2.o CCLD t_init_term CCLD t_pflush2 CCLD t_pflush1 CCLD t_pshutdown CCLD t_prestart CCLD t_pread CCLD t_mpi CCLD t_cache_image CCLD t_bigio CCLD t_shapesame CCLD t_cache CCLD testphdf5 CCLD t_2Gio CCLD t_filters_parallel make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/testpar' Making all in bin make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/bin' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/bin' Making all in tools make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools' Making all in lib make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/lib' CC h5tools.lo CC h5tools_dump.lo CC h5tools_str.lo CC h5tools_utils.lo CC h5diff.lo CC h5diff_array.lo CC h5diff_attr.lo CC h5diff_dset.lo CC h5diff_util.lo CC h5trav.lo CC h5tools_filters.lo CC h5tools_ref.lo CC h5tools_type.lo CC io_timer.lo CCLD libh5tools.la make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/lib' Making all in src make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src' Making all in h5diff make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5diff' CC h5diff_main.o CC h5diff_common.o CC ph5diff_main.o CCLD h5diff CCLD ph5diff make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5diff' Making all in h5ls make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5ls' CC h5ls.o CCLD h5ls make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5ls' Making all in h5dump make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5dump' CC h5dump.o CC h5dump_ddl.o CC h5dump_xml.o CCLD h5dump make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5dump' Making all in misc make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/misc' CC h5debug.o CC h5repart.o CC h5mkgrp.o CC h5clear.o CCLD h5mkgrp CCLD h5clear CCLD h5repart CCLD h5debug make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/misc' Making all in h5import make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5import' CC h5import.o CCLD h5import make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5import' Making all in h5repack make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5repack' CC h5repack.lo CC h5repack_copy.lo CC h5repack_filters.lo CC h5repack_opttable.lo CC h5repack_parse.lo CC h5repack_refs.lo CC h5repack_verify.lo CC h5repack_main.o CCLD libh5repack.la CCLD h5repack make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5repack' Making all in h5jam make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5jam' CC h5jam.o CC h5unjam.o CCLD h5unjam CCLD h5jam make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5jam' Making all in h5copy make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5copy' CC h5copy.o CCLD h5copy make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5copy' Making all in h5format_convert make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5format_convert' CC h5format_convert.o CCLD h5format_convert make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5format_convert' Making all in h5stat make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5stat' CC h5stat.o CCLD h5stat make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5stat' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src' Making all in test make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test' Making all in h5diff make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5diff' CC dynlib_diff.lo CC h5diffgentest.o CCLD libdynlibdiff.la CCLD h5diffgentest make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5diff' Making all in h5ls make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5ls' CC dynlib_ls.lo CCLD libdynlibls.la make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5ls' Making all in h5dump make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5dump' CC dynlib_dump.lo CC h5dumpgentest.o CC binread.o CCLD binread CCLD libdynlibdump.la CCLD h5dumpgentest make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5dump' Making all in misc make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/misc' Making all in vds make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/misc/vds' CC UC_1_one_dim_gen.o CC UC_2_two_dims_gen.o CC UC_3_gaps_gen.o CC UC_4_printf_gen.o CC UC_5_stride_gen.o CCLD UC_3_gaps_gen CCLD UC_1_one_dim_gen CCLD UC_4_printf_gen CCLD UC_2_two_dims_gen CCLD UC_5_stride_gen make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/misc/vds' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/misc' CC h5repart_gentest.o CC h5clear_gentest.o CC talign.o CC repart_test.o CC clear_open_chk.o CCLD h5repart_gentest CCLD clear_open_chk CCLD repart_test CCLD talign CCLD h5clear_gentest make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/misc' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/misc' Making all in h5import make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5import' CC h5importtest.o CCLD h5importtest make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5import' Making all in h5repack make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5repack' CC dynlib_rpk.lo CC dynlib_vrpk.lo CC h5repacktst.o CC testh5repack_detect_szip.o CC h5repackgentest.o CCLD testh5repack_detect_szip CCLD h5repackgentest CCLD libdynlibadd.la CCLD libdynlibvers.la CCLD h5repacktst make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5repack' Making all in h5jam make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5jam' CC tellub.o CC h5jamgentest.o CC getub.o CCLD tellub CCLD getub CCLD h5jamgentest make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5jam' Making all in h5copy make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5copy' CC h5copygentest.o CCLD h5copygentest make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5copy' Making all in h5format_convert make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5format_convert' CC h5fc_gentest.o CC h5fc_chk_idx.o CCLD h5fc_chk_idx CCLD h5fc_gentest make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5format_convert' Making all in h5stat make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5stat' CC h5stat_gentest.o CCLD h5stat_gentest make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5stat' Making all in perform make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/perform' CC sio_perf.o CC sio_engine.o CC pio_perf.o CC pio_engine.o CC iopipe.o CC chunk.o CC chunk_cache.o CC overhead.o CC zip_perf.o CC perf.o CC perf_meta.o CCLD iopipe CCLD chunk CCLD overhead CCLD chunk_cache CCLD perf CCLD zip_perf CCLD perf_meta CCLD h5perf_serial CCLD h5perf make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/perform' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools' Making all in . make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0' make[1]: Nothing to be done for 'all-am'. make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0' Making all in fortran make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran' Making all in src make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran/src' CC H5match_types.o CCLD H5match_types ./H5match_types /usr/bin/make all-am make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran/src' /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c -o H5_buildiface.o H5_buildiface.F90 PPFC H5fortran_types.lo PPFC H5fortkit.lo CC H5f90kit.lo CC H5_f.lo CC H5Af.lo CC H5Df.lo CC H5Ef.lo CC H5Ff.lo CC H5Gf.lo CC H5If.lo CC H5Rf.lo CC H5Lf.lo CC H5Of.lo CC H5Pf.lo CC H5Sf.lo CC H5Tf.lo CC H5Zf.lo libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5fortran_types.F90 -fPIC -o .libs/H5fortran_types.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5fortkit.F90 -fPIC -o .libs/H5fortkit.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5fortran_types.F90 -o H5fortran_types.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5fortkit.F90 -o H5fortkit.o >/dev/null 2>&1 PPFC H5f90global.lo libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5f90global.F90 -fPIC -o .libs/H5f90global.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5f90global.F90 -o H5f90global.o >/dev/null 2>&1 PPFC H5Aff.lo PPFC H5Eff.lo PPFC H5Fff.lo PPFC H5Dff.lo PPFC H5Iff.lo PPFC H5Lff.lo PPFC H5Gff.lo PPFC H5Off.lo PPFC H5Pff.lo PPFC H5Sff.lo PPFC H5Rff.lo PPFC H5Tff.lo PPFC H5Zff.lo PPFC H5VLff.lo libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5Tff.F90 -fPIC -o .libs/H5Tff.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5Gff.F90 -fPIC -o .libs/H5Gff.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5Fff.F90 -fPIC -o .libs/H5Fff.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5VLff.F90 -fPIC -o .libs/H5VLff.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5Aff.F90 -fPIC -o .libs/H5Aff.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5Lff.F90 -fPIC -o .libs/H5Lff.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5Zff.F90 -fPIC -o .libs/H5Zff.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5Pff.F90 -fPIC -o .libs/H5Pff.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5Iff.F90 -fPIC -o .libs/H5Iff.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5Rff.F90 -fPIC -o .libs/H5Rff.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5Sff.F90 -fPIC -o .libs/H5Sff.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5Dff.F90 -fPIC -o .libs/H5Dff.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5Eff.F90 -fPIC -o .libs/H5Eff.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5Off.F90 -fPIC -o .libs/H5Off.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5Zff.F90 -o H5Zff.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5Iff.F90 -o H5Iff.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5Eff.F90 -o H5Eff.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5Rff.F90 -o H5Rff.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5Gff.F90 -o H5Gff.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5VLff.F90 -o H5VLff.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5Lff.F90 -o H5Lff.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5Fff.F90 -o H5Fff.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5Off.F90 -o H5Off.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5Aff.F90 -o H5Aff.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5Tff.F90 -o H5Tff.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5Dff.F90 -o H5Dff.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5Sff.F90 -o H5Sff.o >/dev/null 2>&1 PPFC H5_ff.lo libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5_ff.F90 -fPIC -o .libs/H5_ff.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5Pff.F90 -o H5Pff.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5_ff.F90 -o H5_ff.o >/dev/null 2>&1 FCLD H5_buildiface ./H5_buildiface PPFC H5_gen.lo libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5_gen.F90 -fPIC -o .libs/H5_gen.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c H5_gen.F90 -o H5_gen.o >/dev/null 2>&1 PPFC HDF5.lo libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c HDF5.F90 -fPIC -o .libs/HDF5.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -c HDF5.F90 -o HDF5.o >/dev/null 2>&1 FCLD libhdf5_fortran.la make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran/src' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran/src' Making all in test make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran/test' /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o H5_test_buildiface.o H5_test_buildiface.F90 FCLD H5_test_buildiface ./H5_test_buildiface PPFC tf_gen.lo libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c tf_gen.F90 -fPIC -o .libs/tf_gen.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c tf_gen.F90 -o tf_gen.o >/dev/null 2>&1 PPFC tf.lo libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c tf.F90 -fPIC -o .libs/tf.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c tf.F90 -o tf.o >/dev/null 2>&1 CC t.lo FCLD libh5test_fortran.la /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o tH5F.o tH5F.F90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o tH5D.o tH5D.F90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o tH5R.o tH5R.F90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o tH5S.o tH5S.F90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o tH5T.o tH5T.F90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o tH5VL.o tH5VL.F90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o tH5Z.o tH5Z.F90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o tH5Sselect.o tH5Sselect.F90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o tH5P.o tH5P.F90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o tH5A.o tH5A.F90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o tH5I.o tH5I.F90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o tH5G.o tH5G.F90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o tH5E.o tH5E.F90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o tHDF5.o tHDF5.F90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o fortranlib_test.o fortranlib_test.F90 FCLD fortranlib_test /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o fflush1.o fflush1.F90 FCLD fflush1 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o fflush2.o fflush2.F90 FCLD fflush2 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o tH5O.o tH5O.F90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o tH5A_1_8.o tH5A_1_8.F90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o tH5G_1_8.o tH5G_1_8.F90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o tH5MISC_1_8.o tH5MISC_1_8.F90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o tHDF5_1_8.o tHDF5_1_8.F90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o fortranlib_test_1_8.o fortranlib_test_1_8.F90 FCLD fortranlib_test_1_8 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o tH5E_F03.o tH5E_F03.F90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o tH5F_F03.o tH5F_F03.F90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o tH5L_F03.o tH5L_F03.F90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o tH5O_F03.o tH5O_F03.F90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o tH5P_F03.o tH5P_F03.F90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o tH5T_F03.o tH5T_F03.F90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o tHDF5_F03.o tHDF5_F03.F90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o fortranlib_test_F03.o fortranlib_test_F03.F90 FCLD fortranlib_test_F03 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/src -ffree-line-length-0 -O3 -c -o vol_connector.o vol_connector.F90 FCLD vol_connector make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran/test' Making all in testpar make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran/testpar' /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/test -I../../fortran/src -I../../fortran/test -ffree-line-length-0 -O3 -c -o ptest.o ptest.f90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/test -I../../fortran/src -I../../fortran/test -ffree-line-length-0 -O3 -c -o hyper.o hyper.f90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../src -I../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../fortran/src -I../../fortran/test -I../../fortran/src -I../../fortran/test -ffree-line-length-0 -O3 -c -o mdset.o mdset.f90 FCLD parallel_test make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran/testpar' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran' Making all in hl make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl' Making all in src make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/src' CC H5DO.lo CC H5DS.lo CC H5IM.lo CC H5LT.lo CC H5LTanalyze.lo CC H5LTparse.lo CC H5PT.lo CC H5TB.lo CC H5LD.lo CCLD libhdf5_hl.la make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/src' Making all in test make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/test' CC test_lite.o CC test_image.o CC test_file_image.o CC test_table.o CC test_ds.o CC test_packet.o CC test_packet_vlen.o CC test_ld.o CC test_dset_append.o CC test_h5do_compat.o CCLD test_h5do_compat CCLD test_file_image CCLD test_image CCLD test_table CCLD test_lite CCLD test_packet CCLD test_ld CCLD test_dset_append CCLD test_ds make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/test' Making all in tools make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/tools' Making all in gif2h5 make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/tools/gif2h5' CC gif2hdf.o CC gif2mem.o CC decompress.o CC gifread.o CC writehdf.o CC hdf2gif.o CC hdfgifwr.o CC h52gifgentst.o CCLD h52gifgentst CCLD gif2h5 CCLD h52gif make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/tools/gif2h5' Making all in h5watch make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/tools/h5watch' CC h5watch.o CC swmr_check_compat_vfd.o CC h5watchgentest.o CC extend_dset-extend_dset.o CCLD swmr_check_compat_vfd CCLD h5watchgentest CCLD extend_dset CCLD h5watch make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/tools/h5watch' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/tools' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/tools' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/tools' Making all in fortran make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran' Making all in src make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran/src' CC H5DSfc.lo CC H5LTfc.lo /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../../src -I../../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../../fortran/src -I../../../fortran/src -ffree-line-length-0 -O3 -c -o H5HL_buildiface.o H5HL_buildiface.F90 CC H5IMfc.lo CC H5IMcc.lo CC H5TBfc.lo PPFC H5DSff.lo PPFC H5LTff.lo PPFC H5TBff.lo PPFC H5IMff.lo libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../../src -I../../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../../fortran/src -I../../../fortran/src -ffree-line-length-0 -O3 -c H5IMff.F90 -fPIC -o .libs/H5IMff.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../../src -I../../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../../fortran/src -I../../../fortran/src -ffree-line-length-0 -O3 -c H5LTff.F90 -fPIC -o .libs/H5LTff.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../../src -I../../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../../fortran/src -I../../../fortran/src -ffree-line-length-0 -O3 -c H5TBff.F90 -fPIC -o .libs/H5TBff.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../../src -I../../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../../fortran/src -I../../../fortran/src -ffree-line-length-0 -O3 -c H5DSff.F90 -fPIC -o .libs/H5DSff.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../../src -I../../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../../fortran/src -I../../../fortran/src -ffree-line-length-0 -O3 -c H5DSff.F90 -o H5DSff.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../../src -I../../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../../fortran/src -I../../../fortran/src -ffree-line-length-0 -O3 -c H5IMff.F90 -o H5IMff.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../../src -I../../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../../fortran/src -I../../../fortran/src -ffree-line-length-0 -O3 -c H5TBff.F90 -o H5TBff.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../../src -I../../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../../fortran/src -I../../../fortran/src -ffree-line-length-0 -O3 -c H5LTff.F90 -o H5LTff.o >/dev/null 2>&1 FCLD H5HL_buildiface ./H5HL_buildiface PPFC H5LTff_gen.lo PPFC H5TBff_gen.lo libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../../src -I../../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../../fortran/src -I../../../fortran/src -ffree-line-length-0 -O3 -c H5TBff_gen.F90 -fPIC -o .libs/H5TBff_gen.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../../src -I../../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../../fortran/src -I../../../fortran/src -ffree-line-length-0 -O3 -c H5LTff_gen.F90 -fPIC -o .libs/H5LTff_gen.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../../src -I../../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../../fortran/src -I../../../fortran/src -ffree-line-length-0 -O3 -c H5TBff_gen.F90 -o H5TBff_gen.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../../src -I../../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../../fortran/src -I../../../fortran/src -ffree-line-length-0 -O3 -c H5LTff_gen.F90 -o H5LTff_gen.o >/dev/null 2>&1 FCLD libhdf5hl_fortran.la make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran/src' Making all in test make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran/test' /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../../src -I../../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../../fortran/src -I../../../hl/fortran/src -I../../../fortran/test -I../../../fortran/src -I../../../fortran/test -I../../../hl/fortran/src -ffree-line-length-0 -O3 -c -o tstds.o tstds.F90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../../src -I../../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../../fortran/src -I../../../hl/fortran/src -I../../../fortran/test -I../../../fortran/src -I../../../fortran/test -I../../../hl/fortran/src -ffree-line-length-0 -O3 -c -o tstlite.o tstlite.F90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../../src -I../../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../../fortran/src -I../../../hl/fortran/src -I../../../fortran/test -I../../../fortran/src -I../../../fortran/test -I../../../hl/fortran/src -ffree-line-length-0 -O3 -c -o tstimage.o tstimage.F90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -I. -I../../../src -I../../../fortran/src -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../../fortran/src -I../../../hl/fortran/src -I../../../fortran/test -I../../../fortran/src -I../../../fortran/test -I../../../hl/fortran/src -ffree-line-length-0 -O3 -c -o tsttable.o tsttable.F90 FCLD tstimage FCLD tstds FCLD tsttable FCLD tstlite make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran/test' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl'H5dbg.c: In function ‘H5_buffer_dump’: H5dbg.c:100:5: warning: cannot optimize loop, the loop counter may overflow [-Wunsafe-loop-optimizations] for(u = 0; u < buf_size; u += 16) { ^ H5B2int.c: In function ‘H5B2__iterate_node’: H5B2int.c:1530:68: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] if(NULL == (internal = H5B2__protect_internal(hdr, parent, (H5B2_node_ptr_t *)curr_node, depth, FALSE, H5AC__READ_ONLY_FLAG))) /* Casting away const OK -QAK */ ^ H5B2int.c:1549:60: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] if(NULL == (leaf = H5B2__protect_leaf(hdr, parent, (H5B2_node_ptr_t *)curr_node, FALSE, H5AC__READ_ONLY_FLAG))) /* Casting away const OK -QAK */ ^ H5B2int.c: In function ‘H5B2__delete_node’: H5B2int.c:1640:68: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] if(NULL == (internal = H5B2__protect_internal(hdr, parent, (H5B2_node_ptr_t *)curr_node, depth, FALSE, H5AC__NO_FLAGS_SET))) /* Casting away const OK -QAK */ ^ H5B2int.c:1657:60: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] if(NULL == (leaf = H5B2__protect_leaf(hdr, parent, (H5B2_node_ptr_t *)curr_node, FALSE, H5AC__NO_FLAGS_SET))) /* Casting away const OK -QAK */ ^ H5B2int.c: In function ‘H5B2__node_size’: H5B2int.c:1716:64: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] if(NULL == (internal = H5B2__protect_internal(hdr, parent, (H5B2_node_ptr_t *)curr_node, depth, FALSE, H5AC__READ_ONLY_FLAG))) /* Casting away const OK -QAK */ ^ H5B2int.c: In function ‘H5B2__update_flush_depend’: H5B2int.c:1819:77: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] if(NULL == (child_int = H5B2__protect_internal(hdr, new_parent, (H5B2_node_ptr_t *)node_ptr, (uint16_t)(depth - 1), FALSE, H5AC__NO_FLAGS_SET))) /* Casting away const OK -QAK */ ^ H5B2int.c:1835:74: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] if(NULL == (child_leaf = H5B2__protect_leaf(hdr, new_parent, (H5B2_node_ptr_t *)node_ptr, FALSE, H5AC__NO_FLAGS_SET))) /* Casting away const OK -QAK */ ^ H5Cdbg.c: In function ‘H5C_stats’: H5Cdbg.c:551:5: warning: cannot optimize possibly infinite loops [-Wunsafe-loop-optimizations] for(i = 0; i <= cache_ptr->max_type_id; i++ ) { ^ H5Cdbg.c: In function ‘H5C_stats__reset’: H5Cdbg.c:1074:5: warning: cannot optimize possibly infinite loops [-Wunsafe-loop-optimizations] for(i = 0; i <= cache_ptr->max_type_id; i++) { ^ H5Cdbg.c:1004:5: warning: cannot optimize possibly infinite loops [-Wunsafe-loop-optimizations] for(i = 0; i <= cache_ptr->max_type_id; i++) { ^ H5Cimage.c: In function ‘H5C_image_stats’: H5Cimage.c:982:5: warning: cannot optimize possibly infinite loops [-Wunsafe-loop-optimizations] for(i = 0; i <= cache_ptr->max_type_id; i++) { ^ H5Dchunk.c: In function ‘H5D__chunk_io_init’: H5Dchunk.c:1132:60: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] if((file_space_normalized = H5S_hyper_normalize_offset((H5S_t *)file_space, old_offset)) < 0) ^ H5Dchunk.c:1169:41: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] if(H5S_hyper_denormalize_offset((H5S_t *)file_space, old_offset) < 0) /* (Casting away const OK -QAK) */ ^ H5Dchunk.c: In function ‘H5D__create_chunk_map_single’: H5Dchunk.c:1595:26: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] chunk_info->mspace = (H5S_t *)fm->mem_space; ^ H5Dchunk.c: In function ‘H5D__create_chunk_file_map_hyper’: H5Dchunk.c:1878:38: warning: passing argument 1 of ‘H5S_combine_hyperslab’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] if(H5S_combine_hyperslab(fm->file_space, H5S_SELECT_AND, coords, NULL, fm->chunk_dim, NULL, &tmp_fchunk) < 0) ^ In file included from H5Dprivate.h:26:0, from H5Dpkg.h:30, from H5Dchunk.c:56: H5Sprivate.h:283:15: note: expected ‘H5S_t * {aka struct H5S_t *}’ but argument is of type ‘const H5S_t * {aka const struct H5S_t *}’ H5_DLL herr_t H5S_combine_hyperslab(H5S_t *old_space, H5S_seloper_t op, ^ H5Dchunk.c: In function ‘H5D__create_chunk_mem_map_hyper’: H5Dchunk.c:2028:30: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] chunk_info->mspace = (H5S_t *)fm->mem_space; ^ H5Dchunk.c: In function ‘H5D__create_chunk_mem_map_1d’: H5Dchunk.c:2151:30: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] chunk_info->mspace = (H5S_t *)fm->mem_space; ^ H5Dchunk.c: In function ‘H5D__chunk_allocate’: H5Dchunk.c:4438:17: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] (void *)pline, (H5MM_free_t)H5D__chunk_mem_xfree, (void *)pline, ^ H5Dchunk.c:4438:67: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] (void *)pline, (H5MM_free_t)H5D__chunk_mem_xfree, (void *)pline, ^ H5Dchunk.c:4487:22: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] idx_info.storage = sc; ^ In file included from H5Dchunk.c:51:0: H5Dchunk.c: In function ‘H5D__chunk_collective_fill’: H5Dchunk.c:5031:35: warning: conversion to ‘size_t {aka long unsigned int}’ from ‘int’ may change the sign of the result [-Wsign-conversion] HDqsort(chunk_disp_array, blocks, sizeof(MPI_Aint), H5D__chunk_cmp_addr); ^ H5private.h:1192:39: note: in definition of macro ‘HDqsort’ #define HDqsort(M,N,Z,F) qsort(M,N,Z,F) ^ H5Dchunk.c: In function ‘H5D__chunk_copy_cb’: H5Dchunk.c:6115:69: warning: passing argument 3 of ‘H5O_copy_expand_ref’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] if(H5O_copy_expand_ref(udata->file_src, udata->tid_src, udata->dt_src, buf, nbytes, udata->idx_info_dst->f, bkg, udata->cpy_info) < 0) ^ In file included from H5Dprivate.h:25:0, from H5Dpkg.h:30, from H5Dchunk.c:56: H5Oprivate.h:986:15: note: expected ‘H5T_t * {aka struct H5T_t *}’ but argument is of type ‘const H5T_t * {aka const struct H5T_t *}’ H5_DLL herr_t H5O_copy_expand_ref(H5F_t *file_src, hid_t tid_src, H5T_t *dt_src, ^ H5Dio.c: In function ‘H5D__read’: H5Dio.c:499:15: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] buf = (void *)adj_buf; /* Casting away 'const' OK -QAK */ ^ H5Dint.c: In function ‘H5D__init_type’: H5Dint.c:633:30: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] dset->shared->type = (H5T_t *)type; /* (Cast away const OK - QAK) */ ^ In file included from H5Dint.c:24:0: H5Dint.c: In function ‘H5D_nameof’: H5private.h:2339:11: warning: return discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] return(ret_value); \ ^ H5Dint.c:2253:5: note: in expansion of macro ‘FUNC_LEAVE_NOAPI’ FUNC_LEAVE_NOAPI(dataset ? &(dataset->path) : NULL) ^ H5Cimage.c: In function ‘H5C__prep_image_for_file_close’: H5Cimage.c:2735:5: warning: cannot optimize possibly infinite loops [-Wunsafe-loop-optimizations] for(u = 0; u <= cache_ptr->num_entries_in_image; u++) { ^ H5Eint.c: In function ‘H5E__clear_entries’: H5Eint.c:886:58: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] error->func_name = (const char *) H5MM_xfree((void *)error->func_name); /* Casting away const OK - QAK */ ^ H5Eint.c:888:58: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] error->file_name = (const char *) H5MM_xfree((void *)error->file_name); /* Casting away const OK - QAK */ ^ H5Eint.c:890:53: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] error->desc = (const char *) H5MM_xfree((void *)error->desc); /* Casting away const OK - QAK */ ^ H5Fsuper_cache.c: In function ‘H5F__cache_drvrinfo_get_final_load_size’: H5Fsuper_cache.c:892:45: warning: ‘drvrinfo.len’ may be used uninitialized in this function [-Wmaybe-uninitialized] *actual_len = H5F_DRVINFOBLOCK_HDR_SIZE + drvrinfo.len; ^ In file included from H5Fpkg.h:39:0, from H5Fsuper_cache.c:38: H5Fsuper_cache.c: In function ‘H5F__cache_superblock_get_final_load_size’: H5Gprivate.h:42:19: warning: ‘sblock.sizeof_size’ may be used uninitialized in this function [-Wmaybe-uninitialized] ((sizeof_size) + /*offset of name into heap */ \ ^ H5Fsuper_cache.c:352:17: note: ‘sblock.sizeof_size’ was declared here H5F_super_t sblock; /* Temporary file superblock */ ^ In file included from H5Fsuper_cache.c:38:0: H5Fpkg.h:107:9: warning: ‘sblock.sizeof_addr’ may be used uninitialized in this function [-Wmaybe-uninitialized] + (sizeof_addr) /* base address */ \ ^ H5Fsuper_cache.c:352:17: note: ‘sblock.sizeof_addr’ was declared here H5F_super_t sblock; /* Temporary file superblock */ ^ In file included from H5Fsuper_cache.c:38:0: H5Fpkg.h:131:77: warning: ‘sblock.super_vers’ may be used uninitialized in this function [-Wmaybe-uninitialized] + (v == 1 ? H5F_SUPERBLOCK_VARLEN_SIZE_V1(sizeof_addr, sizeof_size) : 0) \ ^ H5Fsuper_cache.c:352:17: note: ‘sblock.super_vers’ was declared here H5F_super_t sblock; /* Temporary file superblock */ ^ H5FD.c: In function ‘H5FD_fapl_close’: H5FD.c:594:40: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] if((driver->fapl_free)((void *)driver_info) < 0) /* Casting away const OK -QAK */ ^ H5FD.c:598:42: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] driver_info = H5MM_xfree((void *)driver_info); /* Casting away const OK -QAK */ ^ H5FDlog.c: In function ‘H5FD_log_open’: H5FDlog.c:638:95: warning: ‘stat_timeval_diff.tv_usec’ may be used uninitialized in this function [-Wmaybe-uninitialized] HDfprintf(file->logfp, "Stat took: (%f s)\n", (double)stat_timeval_diff.tv_sec + ((double)stat_timeval_diff.tv_usec / (double)1000000.0f)); ^ H5FDlog.c:638:59: warning: ‘stat_timeval_diff.tv_sec’ may be used uninitialized in this function [-Wmaybe-uninitialized] HDfprintf(file->logfp, "Stat took: (%f s)\n", (double)stat_timeval_diff.tv_sec + ((double)stat_timeval_diff.tv_usec / (double)1000000.0f)); ^ H5FDlog.c:636:95: warning: ‘open_timeval_diff.tv_usec’ may be used uninitialized in this function [-Wmaybe-uninitialized] HDfprintf(file->logfp, "Open took: (%f s)\n", (double)open_timeval_diff.tv_sec + ((double)open_timeval_diff.tv_usec / (double)1000000.0f)); ^ H5FDlog.c:636:59: warning: ‘open_timeval_diff.tv_sec’ may be used uninitialized in this function [-Wmaybe-uninitialized] HDfprintf(file->logfp, "Open took: (%f s)\n", (double)open_timeval_diff.tv_sec + ((double)open_timeval_diff.tv_usec / (double)1000000.0f)); ^ H5Gent.c: In function ‘H5G__ent_copy’: H5Gent.c:343:24: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] H5G__ent_reset((H5G_entry_t *)src); ^ In file included from H5Gint.c:35:0: H5Gint.c: In function ‘H5G_nameof’: H5private.h:2339:11: warning: return discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] return(ret_value); \ ^ H5Gint.c:587:5: note: in expansion of macro ‘FUNC_LEAVE_NOAPI’ FUNC_LEAVE_NOAPI(grp ? &(grp->path) : NULL) ^ H5Gloc.c: In function ‘H5G__loc_insert’: H5Gloc.c:607:16: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] lnk.name = (char *)name; ^ H5Gloc.c: In function ‘H5G__loc_set_comment_cb’: H5Gloc.c:967:21: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] comment.s = (char *)udata->comment; ^ H5Gname.c: In function ‘H5G_name_copy’: H5Gname.c:535:24: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] H5G_name_reset((H5G_name_t *)src); ^ H5Gobj.c: In function ‘H5G__obj_create_real’: H5Gobj.c:265:67: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] if(H5O_msg_create(oloc, H5O_LINFO_ID, 0, H5O_UPDATE_TIME, (void *)linfo) < 0) ^ H5Gobj.c:270:73: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] if(H5O_msg_create(oloc, H5O_GINFO_ID, H5O_MSG_FLAG_CONSTANT, 0, (void *)ginfo) < 0) ^ H5Gobj.c:276:77: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] if(H5O_msg_create(oloc, H5O_PLINE_ID, H5O_MSG_FLAG_CONSTANT, 0, (void *)pline) < 0) ^ H5Gobj.c: In function ‘H5G_obj_stab_to_new_cb’: H5Gobj.c:426:51: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] if(H5G_obj_insert(udata->grp_oloc, lnk->name, (H5O_link_t *)lnk, FALSE, H5O_TYPE_UNKNOWN, NULL) < 0) ^ H5Gnode.c: In function ‘H5G__node_copy’: H5Gnode.c:1269:28: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] grp_loc.oloc = (H5O_loc_t *)src_oloc; ^ H5Gtraverse.c: In function ‘H5G__traverse_real’: H5Gtraverse.c:732:52: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] if(H5O_msg_reset(H5O_GINFO_ID, (void *)ginfo) < 0) ^ H5Gtraverse.c:736:52: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] if(H5O_msg_reset(H5O_LINFO_ID, (void *)linfo) < 0) ^ H5Gtraverse.c:740:52: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] if(H5O_msg_reset(H5O_PLINE_ID, (void *)pline) < 0) ^ H5HF.c: In function ‘H5HF_op_write’: H5HF.c:134:17: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] H5MM_memcpy((void *)obj, op_data, obj_len); /* Casting away const OK -QAK */ ^ H5HF.c: In function ‘H5HF_insert’: H5HF.c:378:41: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] if(H5HF__huge_insert(hdr, size, (void *)obj, id) < 0) ^ H5HFcache.c: In function ‘H5HF__cache_hdr_serialize’: H5HFcache.c:772:12: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] hdr->f = f; ^ H5HFcache.c: In function ‘H5HF__cache_iblock_serialize’: H5HFcache.c:1362:12: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] hdr->f = f; ^ H5HFcache.c: In function ‘H5HF__cache_dblock_verify_chksum’: H5HFcache.c:1691:20: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] read_buf = (void *)image; /* Casting away const OK - QAK */ ^ H5HFman.c: In function ‘H5HF__man_write’: H5HFman.c:505:50: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] if(H5HF__man_op_real(hdr, id, H5HF_op_write, (void *)obj, H5HF_OP_MODIFY) < 0) ^ H5HGcache.c: In function ‘H5HG__cache_heap_get_final_load_size’: H5HGcache.c:225:17: warning: ‘heap.size’ may be used uninitialized in this function [-Wmaybe-uninitialized] *actual_len = heap.size; ^ H5I.c: In function ‘H5I__clear_type_cb’: H5I.c:610:81: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] if(udata->type_ptr->cls->free_func && (udata->type_ptr->cls->free_func)((void *)id->obj_ptr) < 0) { /* (Casting away const OK -QAK) */ ^ In file included from H5I.c:38:0: H5I.c: In function ‘H5I__destroy_type’: H5I.c:716:48: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] type_ptr->cls = H5FL_FREE(H5I_class_t, (void *)type_ptr->cls); ^ H5FLprivate.h:130:65: note: in definition of macro ‘H5FL_FREE’ #define H5FL_FREE(t,obj) (t *)H5FL_reg_free(&(H5FL_REG_NAME(t)),obj) ^ H5I.c: In function ‘H5I_subst’: H5I.c:912:17: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] ret_value = (void *)id_ptr->obj_ptr; /* (Casting away const OK -QAK) */ ^ H5I.c: In function ‘H5I_object’: H5I.c:945:21: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] ret_value = (void *)id_ptr->obj_ptr; /* (Casting away const OK -QAK) */ ^ H5I.c: In function ‘H5I_object_verify’: H5I.c:1014:21: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] ret_value = (void *)id_ptr->obj_ptr; /* (Casting away const OK -QAK) */ ^ H5I.c: In function ‘H5I__remove_common’: H5I.c:1238:17: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] ret_value = (void *)curr_id->obj_ptr; /* (Casting away const OK -QAK) */ ^ H5I.c: In function ‘H5I_dec_ref’: H5I.c:1376:68: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] if(!type_ptr->cls->free_func || (type_ptr->cls->free_func)((void *)id_ptr->obj_ptr) >= 0) { ^ H5I.c: In function ‘H5I__iterate_cb’: H5I.c:2083:31: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] obj_ptr = H5I__unwrap((void *)item->obj_ptr, type); ^ H5I.c: In function ‘H5I__find_id_cb’: H5I.c:2316:27: warning: passing argument 1 of ‘H5I__unwrap’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] obj_ptr = H5I__unwrap(item->obj_ptr, type); ^ H5I.c:473:1: note: expected ‘void *’ but argument is of type ‘const void *’ H5I__unwrap(void *obj_ptr, H5I_type_t type) ^ H5I.c: In function ‘H5I__id_dump_cb’: H5I.c:2426:51: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] obj_ptr = (void *)H5T_get_actual_type((H5T_t *)dt); /* Casting away const OK - QAK */ ^ H5L.c: In function ‘H5L__link_cb’: H5L.c:1884:24: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] udata->lnk->name = (char *)name; ^ H5L.c: In function ‘H5L__move_dest_cb’: H5L.c:2676:24: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] udata->lnk->name = (char *)name; ^ H5HFcache.c: In function ‘H5HF__cache_hdr_get_final_load_size’: H5HFcache.c:409:16: warning: ‘hdr.filter_len’ may be used uninitialized in this function [-Wmaybe-uninitialized] H5HF_hdr_t hdr; /* Temporary fractal heap header */ ^ H5L.c: In function ‘H5L__link_copy_file’: H5L.c:3431:28: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] lnk_grp_loc.oloc = (H5O_loc_t *)src_oloc; /* Casting away const OK -QAK */ ^ H5Ocache.c: In function ‘H5O__chunk_deserialize’: H5Ocache.c:1466:25: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] mesg->raw = (uint8_t *)chunk_image; /* Casting away const OK - QAK */ ^ H5Ocache.c: In function ‘H5O__chunk_serialize’: H5Ocache.c:1669:30: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] if(H5O_msg_flush((H5F_t *)f, oh, curr_msg) < 0) ^ H5Odtype.c: In function ‘H5O_dtype_decode_helper’: H5Odtype.c:335:25: warning: cannot optimize possibly infinite loops [-Wunsafe-loop-optimizations] for(j = 0; j <= i; j++) ^ H5Odtype.c:355:33: warning: cannot optimize possibly infinite loops [-Wunsafe-loop-optimizations] for(j = 0; j <= i; j++) ^ H5Pfapl.c: In function ‘H5P__file_driver_free’: H5Pfapl.c:1170:44: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] if((driver->fapl_free)((void *)info->driver_info) < 0) /* Casting away const OK -QAK */ ^ H5Pfapl.c:1174:32: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] H5MM_xfree((void *)info->driver_info); /* Casting away const OK -QAK */ ^ H5Pfapl.c: In function ‘H5P_set_vol’: H5Pfapl.c:5410:35: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] vol_prop.connector_info = (void *)vol_info; ^ H5RS.c: In function ‘H5RS_wrap’: H5RS.c:151:20: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] ret_value->s = (char *)s; ^ H5Shyper.c: In function ‘H5S__hyper_iter_init’: H5Shyper.c:603:28: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] H5S__hyper_rebuild((H5S_t *)space); /* Casting away const OK -NAF */ ^ H5Shyper.c: In function ‘H5S__hyper_is_regular’: H5Shyper.c:5363:28: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] H5S__hyper_rebuild((H5S_t *)space); /* Casting away const OK -NAF */ ^ H5Shyper.c: In function ‘H5S__hyper_shape_same’: H5Shyper.c:5629:28: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] H5S__hyper_rebuild((H5S_t *)space1); /* Casting away const OK -QAK */ ^ H5Shyper.c:5631:28: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] H5S__hyper_rebuild((H5S_t *)space2); /* Casting away const OK -QAK */ ^ H5Shyper.c:5676:42: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] if(H5S__hyper_generate_spans((H5S_t *)space1) < 0) /* Casting away const OK -QAK */ ^ H5Shyper.c:5679:42: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] if(H5S__hyper_generate_spans((H5S_t *)space2) < 0) /* Casting away const OK -QAK */ ^ H5Shyper.c: In function ‘H5S__hyper_intersect_block’: H5Shyper.c:6300:28: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] H5S__hyper_rebuild((H5S_t *)space); /* Casting away const OK -QAK */ ^ H5Shyper.c: In function ‘H5S__hyper_proj_int_iterate’: H5Shyper.c:11431:74: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] H5S_HYPER_PROJ_INT_ADD_SKIP(udata, H5S__hyper_spans_nelem_helper((H5S_hyper_span_info_t *)ss_span_info, 0, udata->op_gen) * count, FAIL); /* Casting away const OK -NAF */ ^ H5Shyper.c:74:27: note: in definition of macro ‘H5S_HYPER_PROJ_INT_ADD_SKIP’ (UDATA)->skip += (ADD); \ ^ H5Shyper.c: In function ‘H5S__hyper_project_intersection’: H5Shyper.c:11520:42: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] if(H5S__hyper_generate_spans((H5S_t *)src_space) < 0) /* Casting away const OK -NAF */ ^ H5Shyper.c:11540:42: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] if(H5S__hyper_generate_spans((H5S_t *)dst_space) < 0) /* Casting away const OK -NAF */ ^ H5Shyper.c:11558:38: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] if(H5S__hyper_generate_spans((H5S_t *)src_intersect_space) < 0) /* Casting away const OK -NAF */ ^ H5Sselect.c: In function ‘H5S_select_project_intersection’: H5Sselect.c:2604:20: warning: size of ‘ss_iter’ is 3160 bytes [-Wlarger-than=] H5S_sel_iter_t ss_iter; /* Selection iterator for src_space */ ^ H5Sselect.c:2606:20: warning: size of ‘ds_iter’ is 3160 bytes [-Wlarger-than=] H5S_sel_iter_t ds_iter; /* Selection iterator for dst_space */ ^ H5SL.c: In function ‘H5SL_release_common’: H5SL.c:896:36: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] (void)(op)(node->item, (void *)node->key, op_data); ^ H5SL.c: In function ‘H5SL_iterate’: H5SL.c:2210:46: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] if((ret_value = (op)(node->item, (void *)node->key, op_data)) != 0) ^ H5SL.c: In function ‘H5SL_try_free_safe’: H5SL.c:2369:44: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] if((op_ret = (op)(node->item , (void *)node->key, op_data)) < 0) ^ H5T.c: In function ‘H5T_nameof’: H5T.c:5375:23: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] ret_value = &(dt->path); ^ H5Tnative.c:533:1: warning: unknown option after ‘#pragma GCC diagnostic’ kind [-Wpragmas] H5_GCC_DIAG_OFF(duplicated-branches) ^ H5Tnative.c:682:1: warning: unknown option after ‘#pragma GCC diagnostic’ kind [-Wpragmas] H5_GCC_DIAG_OFF(duplicated-branches) ^ H5Tnative.c:815:1: warning: unknown option after ‘#pragma GCC diagnostic’ kind [-Wpragmas] H5_GCC_DIAG_OFF(duplicated-branches) ^ H5detect.c: In function ‘fix_order’: H5detect.c:1046:13: warning: cannot optimize loop, the loop counter may overflow [-Wunsafe-loop-optimizations] for(i = 0; i < n; i += 2) { ^ H5Tref.c: In function ‘H5T__ref_disk_isnull’: H5Tref.c:672:41: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] if(H5VL_blob_specific(src_file, (void *)p, H5VL_BLOB_ISNULL, isnull) < 0) ^ H5Tvlen.c: In function ‘H5T__vlen_disk_delete’: H5Tvlen.c:1030:41: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] if(H5VL_blob_specific(file, (void *)vl, H5VL_BLOB_DELETE) < 0) /* Casting away 'const' OK -QAK */ ^ H5VLint.c: In function ‘H5VL__free_cls’: H5VLint.c:321:16: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] H5MM_xfree((void *)cls->name); /* Casting away const OK -QAK */ ^ H5VLint.c: In function ‘H5VL_register_connector’: H5VLint.c:1147:24: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] H5MM_xfree((void *)(saved->name)); /* Casting away const OK -QAK */ ^ H5Znbit.c: In function ‘H5Z_nbit_decompress_one_byte’: H5Znbit.c:1096:32: warning: conversion to ‘unsigned char’ from ‘int’ may alter its value [-Wconversion] data[data_offset + k] |= (unsigned char)( ^ H5Znbit.c: In function ‘H5Z_nbit_compress_one_byte’: H5Znbit.c:1394:21: warning: conversion to ‘unsigned char’ from ‘int’ may alter its value [-Wconversion] buffer[*j] |= (unsigned char)((val & ~((unsigned)(~0) << dat_len)) << (*buf_len - dat_len)); ^ H5Zscaleoffset.c: In function ‘H5Z_scaleoffset_compress_one_byte’: H5Zscaleoffset.c:1634:21: warning: conversion to ‘unsigned char’ from ‘int’ may alter its value [-Wconversion] buffer[*j] |= (unsigned char)((val & ~((unsigned)(~0) << dat_len)) << (*buf_len - dat_len)); ^ H5Znbit.c: In function ‘H5Z_nbit_compress_one_atomic’: H5Znbit.c:1452:9: warning: cannot optimize possibly infinite loops [-Wunsafe-loop-optimizations] for(k = (int)begin_i; k >= (int)end_i; k--) ^ H5Znbit.c:1467:9: warning: cannot optimize possibly infinite loops [-Wunsafe-loop-optimizations] for(k = (int)begin_i; k <= (int)end_i; k++) ^ H5Znbit.c: In function ‘H5Z_nbit_decompress_one_atomic’: H5Znbit.c:1147:9: warning: cannot optimize possibly infinite loops [-Wunsafe-loop-optimizations] for(k = (int)begin_i; k >= (int)end_i; k--) ^ H5Znbit.c:1162:9: warning: cannot optimize possibly infinite loops [-Wunsafe-loop-optimizations] for(k = (int)begin_i; k <= (int)end_i; k++) ^ H5Cmpio.c: In function ‘H5C_apply_candidate_list’: H5Cmpio.c:250:9: warning: cannot optimize possibly infinite loops [-Wunsafe-loop-optimizations] for(i = 1; i <= m; i++) ^ H5Tconv.c: In function ‘H5T_reverse_order’: H5Tconv.c:9499:9: warning: cannot optimize loop, the loop counter may overflow [-Wunsafe-loop-optimizations] for (i = 0; i < size; i += 2) { ^ H5Smpio.c: In function ‘H5S__mpio_permute_type’: H5Smpio.c:514:20: warning: size of ‘sel_iter’ is 3160 bytes [-Wlarger-than=] H5S_sel_iter_t sel_iter; /* Selection iteration info */ ^ H5Smpio.c:547:17: warning: size of ‘off’ is 8192 bytes [-Wlarger-than=] hsize_t off[H5D_IO_VECTOR_SIZE]; /* Array to store sequence offsets */ ^ H5Smpio.c:548:16: warning: size of ‘len’ is 8192 bytes [-Wlarger-than=] size_t len[H5D_IO_VECTOR_SIZE]; /* Array to store sequence lengths */ ^ H5Smpio.c: In function ‘H5S__mpio_reg_hyper_type’: H5Smpio.c:646:20: warning: size of ‘sel_iter’ is 3160 bytes [-Wlarger-than=] H5S_sel_iter_t sel_iter; /* Selection iteration info */ ^ H5Shyper.c: In function ‘H5S__fill_in_select’: H5Shyper.c:10450:7: warning: ‘updated_spans’ may be used uninitialized in this function [-Wmaybe-uninitialized] if(updated_spans) { ^ H5Smpio.c: In function ‘H5S__mpio_permute_type’: H5Smpio.c:510:1: warning: stack usage might be 19760 bytes [-Wstack-usage=] H5S__mpio_permute_type(const H5S_t *space, size_t elmt_size, hsize_t **permute, ^ H5Smpio.c:623:1: warning: the frame size of 19680 bytes is larger than 16384 bytes [-Wframe-larger-than=] } /* H5S__mpio_permute_type() */ ^ H5lib_settings.c:117:1: warning: string length ‘7337’ is greater than the length ‘4095’ ISO C99 compilers are required to support [-Woverlength-strings] ; ^ H5lib_settings.c:31:6: warning: size of ‘H5libhdf5_settings’ is 7338 bytes [-Wlarger-than=] char H5libhdf5_settings[]= ^ H5Zscaleoffset.c: In function ‘H5Z_filter_scaleoffset’: H5Zscaleoffset.c:1590:7: warning: cannot optimize possibly infinite loops [-Wunsafe-loop-optimizations] for(k = (int)begin_i; k <= (int)(p.size - 1); k++) ^ H5Zscaleoffset.c:1672:7: warning: cannot optimize possibly infinite loops [-Wunsafe-loop-optimizations] for(k = (int)begin_i; k <= (int)(p.size - 1); k++) ^ H5Tconv.c: In function ‘H5T__conv_f_f’: H5Tconv.c:4623:21: warning: cannot optimize loop, the loop counter may overflow [-Wunsafe-loop-optimizations] for (i = 0; i < tsize; i += 4) { ^ H5Tconv.c:4245:21: warning: cannot optimize loop, the loop counter may overflow [-Wunsafe-loop-optimizations] for (i = 0; i < tsize; i += 4) { ^ In file included from H5SL.c:64:0: H5SL.c: In function ‘H5SL_search’: H5private.h:2339:11: warning: ‘ret_value’ may be used uninitialized in this function [-Wmaybe-uninitialized] return(ret_value); \ ^ H5SL.c:1397:11: note: ‘ret_value’ was declared here void *ret_value; /* Return value */ ^ In file included from H5SL.c:64:0: H5SL.c: In function ‘H5SL_find’: H5private.h:2339:11: warning: ‘ret_value’ may be used uninitialized in this function [-Wmaybe-uninitialized] return(ret_value); \ ^ H5SL.c:1698:18: note: ‘ret_value’ was declared here H5SL_node_t *ret_value; /* Return value */ ^ H5Tconv.c: In function ‘H5T__conv_f_i’: H5Tconv.c:8647:21: warning: cannot optimize loop, the loop counter may overflow [-Wunsafe-loop-optimizations] for (i = 0; i < tsize; i += 4) { ^ H5Tconv.c: In function ‘H5T__conv_i_f’: H5Tconv.c:9427:21: warning: cannot optimize loop, the loop counter may overflow [-Wunsafe-loop-optimizations] for (i = 0; i < tsize; i += 4) { ^ ttst.c: In function ‘test_tst_init’: ttst.c:105:18: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] tmp_word=(char *)words[u]; ^ tcoords.c: In function ‘test_multiple_ends’: tcoords.c:410:9: warning: size of ‘data_buf’ is 69120 bytes [-Wlarger-than=] int data_buf[4][5][3][4][2][3][6][2]; ^ tcoords.c:446:9: warning: size of ‘mem5_buffer’ is 7680 bytes [-Wlarger-than=] int mem5_buffer[4][5][1][4][2][1][6][2]; ^ th5s.c:2465:9: warning: size of ‘chunk_data_dbl’ is 1200000 bytes [-Wlarger-than=] double chunk_data_dbl[50000][3]; ^ th5s.c:2466:8: warning: size of ‘chunk_data_flt’ is 600000 bytes [-Wlarger-than=] float chunk_data_flt[50000][3]; ^ cache.c: In function ‘check_flush_cache__flush_ops’: cache.c:7147:37: warning: size of ‘spec’ is 2592 bytes [-Wlarger-than=] struct fo_flush_cache_test_spec spec[6] = ^ cache_image.c: In function ‘evict_on_close_test’: cache.c:7413:37: warning: size of ‘spec’ is 2592 bytes [-Wlarger-than=] struct fo_flush_cache_test_spec spec[6] = ^ cache_image.c:7828:29: warning: unused parameter ‘single_file_vfd’ [-Wunused-parameter] evict_on_close_test(hbool_t single_file_vfd) ^ cache.c:8011:37: warning: size of ‘spec’ is 4320 bytes [-Wlarger-than=] struct fo_flush_cache_test_spec spec[10] = ^ cache.c:8445:37: warning: size of ‘spec’ is 4320 bytes [-Wlarger-than=] struct fo_flush_cache_test_spec spec[10] = ^ cache.c: In function ‘check_flush_cache__flush_op_eviction_test’: cache.c:9657:34: warning: size of ‘expected’ is 6160 bytes [-Wlarger-than=] struct expected_entry_status expected[10 + 31 + 14] = ^ cache.c: In function ‘check_flush_cache__single_entry’: cache.c:12202:7: warning: size of ‘spec’ is 8192 bytes [-Wlarger-than=] } spec[256] = ^ tvltypes.c: In function ‘test_vltypes_fill_value’: tvltypes.c:2438:40: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] const dtype1_struct fill1 = {1, 2, "foobar", "", NULL, "\0", "dead", 3, 4.0F, 100.0F, 1.0F, "liquid", "meter"}; ^ tvltypes.c:2438:50: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] const dtype1_struct fill1 = {1, 2, "foobar", "", NULL, "\0", "dead", 3, 4.0F, 100.0F, 1.0F, "liquid", "meter"}; ^ tvltypes.c:2438:60: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] const dtype1_struct fill1 = {1, 2, "foobar", "", NULL, "\0", "dead", 3, 4.0F, 100.0F, 1.0F, "liquid", "meter"}; ^ tvltypes.c:2438:66: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] const dtype1_struct fill1 = {1, 2, "foobar", "", NULL, "\0", "dead", 3, 4.0F, 100.0F, 1.0F, "liquid", "meter"}; ^ tvltypes.c:2438:97: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] const dtype1_struct fill1 = {1, 2, "foobar", "", NULL, "\0", "dead", 3, 4.0F, 100.0F, 1.0F, "liquid", "meter"}; ^ tvltypes.c:2438:107: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] const dtype1_struct fill1 = {1, 2, "foobar", "", NULL, "\0", "dead", 3, 4.0F, 100.0F, 1.0F, "liquid", "meter"}; ^ tvltypes.c:2439:40: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] const dtype1_struct wdata = {3, 4, "", NULL, "\0", "foo", "two", 6, 8.0F, 200.0F, 2.0F, "solid", "yard"}; ^ tvltypes.c:2439:50: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] const dtype1_struct wdata = {3, 4, "", NULL, "\0", "foo", "two", 6, 8.0F, 200.0F, 2.0F, "solid", "yard"}; ^ tvltypes.c:2439:56: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] const dtype1_struct wdata = {3, 4, "", NULL, "\0", "foo", "two", 6, 8.0F, 200.0F, 2.0F, "solid", "yard"}; ^ tvltypes.c:2439:63: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] const dtype1_struct wdata = {3, 4, "", NULL, "\0", "foo", "two", 6, 8.0F, 200.0F, 2.0F, "solid", "yard"}; ^ tvltypes.c:2439:93: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] const dtype1_struct wdata = {3, 4, "", NULL, "\0", "foo", "two", 6, 8.0F, 200.0F, 2.0F, "solid", "yard"}; ^ tvltypes.c:2439:102: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] const dtype1_struct wdata = {3, 4, "", NULL, "\0", "foo", "two", 6, 8.0F, 200.0F, 2.0F, "solid", "yard"}; ^ cache.c: In function ‘check_metadata_blizzard_absence’: cache.c:28177:34: warning: size of ‘expected’ is 16800 bytes [-Wlarger-than=] struct expected_entry_status expected[150] = ^ cache.c: In function ‘check_metadata_cork’: cache.c:33762:34: warning: size of ‘expected’ is 16800 bytes [-Wlarger-than=] struct expected_entry_status expected[150] = ^ filter_plugin2_dsets.c: In function ‘mult_div_value’: filter_plugin2_dsets.c:73:15: warning: cannot optimize loop, the loop counter may overflow [-Wunsafe-loop-optimizations] while (buf_left > 0) { ^ filter_plugin2_dsets.c:80:15: warning: cannot optimize loop, the loop counter may overflow [-Wunsafe-loop-optimizations] while (buf_left > 0) { ^ cache.c: In function ‘cedds__expunge_dirty_entry_in_flush_test’: cache.c:34588:34: warning: size of ‘expected’ is 4032 bytes [-Wlarger-than=] struct expected_entry_status expected[36] = ^ cache.c: In function ‘cedds__H5C_make_space_in_cache’: cache.c:34817:34: warning: size of ‘expected’ is 4032 bytes [-Wlarger-than=] struct expected_entry_status expected[36] = ^ filter_plugin3_dsets.c: In function ‘add_sub_value_hdf5’: filter_plugin3_dsets.c:104:15: warning: cannot optimize loop, the loop counter may overflow [-Wunsafe-loop-optimizations] while (buf_left > 0) { ^ filter_plugin3_dsets.c:111:15: warning: cannot optimize loop, the loop counter may overflow [-Wunsafe-loop-optimizations] while (buf_left > 0) { ^ filter_plugin1_dsets.c: In function ‘add_sub_value’: filter_plugin1_dsets.c:77:15: warning: cannot optimize loop, the loop counter may overflow [-Wunsafe-loop-optimizations] while (buf_left > 0) { ^ filter_plugin1_dsets.c:84:15: warning: cannot optimize loop, the loop counter may overflow [-Wunsafe-loop-optimizations] while (buf_left > 0) { ^ cache.c: In function ‘cedds__H5C__autoadjust__ageout__evict_aged_out_entries’: cache.c:35196:34: warning: size of ‘expected’ is 4032 bytes [-Wlarger-than=] struct expected_entry_status expected[36] = ^ cache.c: In function ‘check_flush_cache__single_entry’: cc1: warning: size of ‘*.LC4’ is 8192 bytes [-Wlarger-than=] cache.c: In function ‘cedds__H5C_make_space_in_cache’: cc1: warning: size of ‘*.LC19’ is 4032 bytes [-Wlarger-than=] tcoords.c:402:13: warning: stack usage might be 81952 bytes [-Wstack-usage=] static void test_multiple_ends(hid_t file, hbool_t is_chunked) ^ tcoords.c:661:1: warning: the frame size of 81872 bytes is larger than 16384 bytes [-Wframe-larger-than=] } ^ dt_arith.c: In function ‘test_particular_fp_integer’: dt_arith.c:773:9: warning: unsuffixed float constant [-Wunsuffixed-float-constants] double x = 0.; ^ dt_arith.c:817:9: warning: unsuffixed float constant [-Wunsuffixed-float-constants] float x = 0.; ^ dt_arith.c: In function ‘my_isnan’: dt_arith.c:2726:5: warning: unsuffixed float constant [-Wunsuffixed-float-constants] float x = 0.; ^ dt_arith.c:2728:16: warning: comparing floating point with == or != is unsafe [-Wfloat-equal] retval = (x!=x); ^ dt_arith.c:2730:5: warning: unsuffixed float constant [-Wunsuffixed-float-constants] double x = 0.; ^ dt_arith.c:2732:16: warning: comparing floating point with == or != is unsafe [-Wfloat-equal] retval = (x!=x); ^ dt_arith.c:2735:5: warning: unsuffixed float constant [-Wunsuffixed-float-constants] long double x = 0.; ^ dt_arith.c:2737:16: warning: comparing floating point with == or != is unsafe [-Wfloat-equal] retval = (x!=x); ^ dt_arith.c:2749:9: warning: unsuffixed float constant [-Wunsuffixed-float-constants] float x = 0.; ^ dt_arith.c:2754:9: warning: unsuffixed float constant [-Wunsuffixed-float-constants] double x = 0.; ^ dt_arith.c:2760:9: warning: unsuffixed float constant [-Wunsuffixed-float-constants] long double x = 0.; ^ dt_arith.c: In function ‘test_conv_flt_1’: dt_arith.c:3200:17: warning: unsuffixed float constant [-Wunsuffixed-float-constants] float x = 0.; ^ dt_arith.c:3211:17: warning: unsuffixed float constant [-Wunsuffixed-float-constants] double x = 0.; ^ dt_arith.c:3223:17: warning: unsuffixed float constant [-Wunsuffixed-float-constants] long double x = 0.; ^ dt_arith.c:3268:13: warning: unsuffixed float constant [-Wunsuffixed-float-constants] float x = 0.; ^ dt_arith.c:3272:13: warning: unsuffixed float constant [-Wunsuffixed-float-constants] double x = 0.; ^ dt_arith.c:3277:13: warning: unsuffixed float constant [-Wunsuffixed-float-constants] long double x = 0.; ^ dt_arith.c:3288:13: warning: unsuffixed float constant [-Wunsuffixed-float-constants] float x = 0.; ^ dt_arith.c:3292:13: warning: unsuffixed float constant [-Wunsuffixed-float-constants] double x = 0.; ^ dt_arith.c:3297:13: warning: unsuffixed float constant [-Wunsuffixed-float-constants] long double x = 0.; ^ fheap.c: In function ‘test_man_incr_insert_remove’: fheap.c:7619:19: warning: size of ‘heap_id’ is 6400 bytes [-Wlarger-than=] unsigned char heap_id[100][MAX_HEAP_ID_LEN]; /* Heap ID for object inserted */ ^ chunk_info.c: In function ‘test_get_chunk_info_highest_v18’: chunk_info.c:488:5: warning: unsuffixed float constant [-Wunsuffixed-float-constants] uLongf z_dst_nbytes = (uLongf)DEFLATE_SIZE_ADJUST(CHK_SIZE); ^ chunk_info.c:488:5: warning: unsuffixed float constant [-Wunsuffixed-float-constants] dsets.c:279:9: warning: size of ‘points’ is 80000 bytes [-Wlarger-than=] int points[DSET_DIM1][DSET_DIM2], check[DSET_DIM1][DSET_DIM2]; ^ dsets.c:279:39: warning: size of ‘check’ is 80000 bytes [-Wlarger-than=] int points[DSET_DIM1][DSET_DIM2], check[DSET_DIM1][DSET_DIM2]; ^ dsets.c:280:9: warning: size of ‘points_dbl’ is 160000 bytes [-Wlarger-than=] double points_dbl[DSET_DIM1][DSET_DIM2], check_dbl[DSET_DIM1][DSET_DIM2]; ^ dsets.c:280:43: warning: size of ‘check_dbl’ is 160000 bytes [-Wlarger-than=] double points_dbl[DSET_DIM1][DSET_DIM2], check_dbl[DSET_DIM1][DSET_DIM2]; ^ dsets.c: In function ‘test_simple_io’: dsets.c:518:17: warning: size of ‘rdata’ is 80000 bytes [-Wlarger-than=] int rdata[DSET_DIM1][DSET_DIM2]; ^ dsets.c: In function ‘test_userblock_offset’: dsets.c:651:25: warning: size of ‘rdata’ is 80000 bytes [-Wlarger-than=] int rdata[DSET_DIM1][DSET_DIM2]; ^ dsets.c: In function ‘test_nbit_float’: dsets.c:3080:34: warning: comparing floating point with == or != is unsafe [-Wfloat-equal] if(!(orig_data[i][j] == orig_data[i][j])) ^ dsets.c: In function ‘test_nbit_double’: dsets.c:3212:34: warning: comparing floating point with == or != is unsafe [-Wfloat-equal] if(!(orig_data[i][j] == orig_data[i][j])) ^ dsets.c: In function ‘test_nbit_compound’: dsets.c:3547:36: warning: comparing floating point with == or != is unsafe [-Wfloat-equal] (orig_data[i][j].f == orig_data[i][j].f && !H5_FLT_ABS_EQUAL(new_data[i][j].f, orig_data[i][j].f))) ^ dsets.c: In function ‘test_nbit_compound_2’: dsets.c:3869:55: warning: comparing floating point with == or != is unsafe [-Wfloat-equal] (new_data[i][j].d[m][n].f == new_data[i][j].d[m][n].f && !H5_FLT_ABS_EQUAL(new_data[i][j].d[m][n].f, new_data[i][j].d[m][n].f))) { ^ dsets.c:3878:41: warning: comparing floating point with == or != is unsafe [-Wfloat-equal] (new_data[i][j].a.f == new_data[i][j].a.f && !H5_FLT_ABS_EQUAL(new_data[i][j].a.f, new_data[i][j].a.f)) || ^ dsets.c: In function ‘test_nbit_int_size’: dsets.c:4134:13: warning: size of ‘orig_data’ is 80000 bytes [-Wlarger-than=] int orig_data[DSET_DIM1][DSET_DIM2]; ^ dsets.c: In function ‘test_nbit_flt_size’: dsets.c:4302:13: warning: size of ‘orig_data’ is 80000 bytes [-Wlarger-than=] float orig_data[DSET_DIM1][DSET_DIM2]; ^ dsets.c: In function ‘test_missing_chunk’: dsets.c:6865:17: warning: size of ‘wdata2’ is 40000 bytes [-Wlarger-than=] int wdata2[MISSING_CHUNK_DIM][MISSING_CHUNK_DIM], ^ dsets.c:6866:17: warning: size of ‘rdata2’ is 40000 bytes [-Wlarger-than=] rdata2[MISSING_CHUNK_DIM][MISSING_CHUNK_DIM]; ^ dsets.c: In function ‘test_big_chunks_bypass_cache’: dsets.c:8085:17: warning: size of ‘t_wdata’ is 250000 bytes [-Wlarger-than=] static int t_wdata[BYPASS_CHUNK_DIM/2][BYPASS_CHUNK_DIM/2], t_rdata1[BYPASS_DIM][BYPASS_DIM], ^ dsets.c:8085:66: warning: size of ‘t_rdata1’ is 4000000 bytes [-Wlarger-than=] static int t_wdata[BYPASS_CHUNK_DIM/2][BYPASS_CHUNK_DIM/2], t_rdata1[BYPASS_DIM][BYPASS_DIM], ^ dsets.c:8086:17: warning: size of ‘t_rdata2’ is 250000 bytes [-Wlarger-than=] t_rdata2[BYPASS_CHUNK_DIM/2][BYPASS_CHUNK_DIM/2]; ^ dsets.c: In function ‘test_chunk_fast_bug1’: dsets.c:8838:21: warning: size of ‘wbuf’ is 3200 bytes [-Wlarger-than=] static unsigned wbuf[40][20], rbuf[40][20]; /* Element written/read */ ^ dsets.c:8838:35: warning: size of ‘rbuf’ is 3200 bytes [-Wlarger-than=] static unsigned wbuf[40][20], rbuf[40][20]; /* Element written/read */ ^ dsets.c: In function ‘test_fixed_array’: dsets.c:9440:17: warning: size of ‘chunks_big’ is 10000 bytes [-Wlarger-than=] int chunks_big[125][20]; /* # of chunks for big dataset dimensions */ ^ dsets.c:9445:17: warning: size of ‘coord_big’ is 40000 bytes [-Wlarger-than=] hsize_t coord_big[POINTS_BIG][2]; /* big dataset coordinates */ ^ extend.c:32:14: warning: size of ‘buf1’ is 40000 bytes [-Wlarger-than=] static int buf1[NY][NX], buf2[NX / 2][NY / 2]; ^ extend.c:32:28: warning: size of ‘buf2’ is 10000 bytes [-Wlarger-than=] static int buf1[NY][NX], buf2[NX / 2][NY / 2]; ^ cache_common.c: In function ‘reset_entries’: cache_common.c:2318:13: warning: cannot optimize possibly infinite loops [-Wunsafe-loop-optimizations] for ( j = 0; j <= max_index; j++ ) ^ cache_common.c: In function ‘verify_clean’: cache_common.c:2563:13: warning: cannot optimize possibly infinite loops [-Wunsafe-loop-optimizations] for ( j = 0; j <= max_index; j++ ) ^ direct_chunk.c: In function ‘filter_bogus1’: direct_chunk.c:668:14: warning: cannot optimize loop, the loop counter may overflow [-Wunsafe-loop-optimizations] while(buf_left>0) { ^ direct_chunk.c:675:14: warning: cannot optimize loop, the loop counter may overflow [-Wunsafe-loop-optimizations] while(buf_left>0) { ^ direct_chunk.c: In function ‘filter_bogus2’: direct_chunk.c:705:14: warning: cannot optimize loop, the loop counter may overflow [-Wunsafe-loop-optimizations] while(buf_left>0) { ^ direct_chunk.c:712:14: warning: cannot optimize loop, the loop counter may overflow [-Wunsafe-loop-optimizations] while(buf_left>0) { ^ objcopy_ref.c: In function ‘compare_data’: objcopy_ref.c:819:24: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] ref_buf1 = (H5R_ref_t *)buf1; ^ objcopy_ref.c:820:24: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] ref_buf2 = (H5R_ref_t *)buf2; ^ fillval.c: In function ‘test_extend_cases’: fillval.c:1456:40: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] comp_vl_datatype init_val_c = {87, "baz", "mumble", 129}; ^ fillval.c:1456:47: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] comp_vl_datatype init_val_c = {87, "baz", "mumble", 129}; ^ fillval.c: In function ‘test_extend’: fillval.c:1859:39: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] comp_vl_datatype fillval_c = {32, "foo", "bar", 64}; /* Fill value for compound+vl datatype tests */ ^ fillval.c:1859:46: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] comp_vl_datatype fillval_c = {32, "foo", "bar", 64}; /* Fill value for compound+vl datatype tests */ ^ dsets.c: In function ‘test_simple_io’: dsets.c:509:1: warning: stack usage might be 81184 bytes [-Wstack-usage=] test_simple_io(const char *env_h5_drvr, hid_t fapl) ^ dsets.c:630:1: warning: the frame size of 81104 bytes is larger than 16384 bytes [-Wframe-larger-than=] } /* end test_simple_io() */ ^ set_extent.c: In function ‘test_random_rank4’: set_extent.c:2274:17: warning: size of ‘rbuf’ is 40000 bytes [-Wlarger-than=] static int rbuf[10][10][10][10]; /* Read buffer */ ^ set_extent.c:2275:17: warning: size of ‘wbuf’ is 40000 bytes [-Wlarger-than=] static int wbuf[10][10][10][10]; /* Write buffer */ ^ set_extent.c:2276:20: warning: size of ‘dim_log’ is 3232 bytes [-Wlarger-than=] static hsize_t dim_log[RAND4_NITER+1][4]; /* Log of dataset dimensions */ ^ set_extent.c: In function ‘test_random_rank4_vl’: set_extent.c:2477:18: warning: size of ‘rbuf’ is 160000 bytes [-Wlarger-than=] static hvl_t rbuf[10][10][10][10]; /* Read buffer */ ^ set_extent.c:2478:18: warning: size of ‘wbuf’ is 160000 bytes [-Wlarger-than=] static hvl_t wbuf[10][10][10][10]; /* Write buffer */ ^ set_extent.c:2479:20: warning: size of ‘dim_log’ is 3232 bytes [-Wlarger-than=] static hsize_t dim_log[RAND4_NITER+1][4]; /* Log of dataset dimensions */ ^ cache.c: In function ‘check_flush_cache__single_entry’: cache.c:10981:1: warning: stack usage might be 8320 bytes [-Wstack-usage=] check_flush_cache__single_entry(H5F_t * file_ptr) ^ vfd.c: In function ‘test_family’: vfd.c:866:17: warning: size of ‘buf’ is 16384 bytes [-Wlarger-than=] int buf[FAMILY_NUMBER][FAMILY_SIZE]; ^ vfd.c: In function ‘test_family_member_fapl’: vfd.c:1160:14: warning: size of ‘buf’ is 16384 bytes [-Wlarger-than=] int buf[FAMILY_NUMBER][FAMILY_SIZE]; ^ vfd.c: In function ‘test_multi’: vfd.c:1340:17: warning: size of ‘buf’ is 65536 bytes [-Wlarger-than=] int buf[MULTI_SIZE][MULTI_SIZE]; ^ vfd.c: In function ‘test_multi_compat’: vfd.c:1575:17: warning: size of ‘buf’ is 65536 bytes [-Wlarger-than=] int buf[MULTI_SIZE][MULTI_SIZE]; ^ ntypes.c:33:5: warning: size of ‘ipoints2’ is 80000 bytes [-Wlarger-than=] int ipoints2[DIM0][DIM1], icheck2[DIM0][DIM1]; ^ ntypes.c:33:27: warning: size of ‘icheck2’ is 80000 bytes [-Wlarger-than=] int ipoints2[DIM0][DIM1], icheck2[DIM0][DIM1]; ^ ntypes.c:34:7: warning: size of ‘spoints2’ is 40000 bytes [-Wlarger-than=] short spoints2[DIM0][DIM1], scheck2[DIM0][DIM1]; ^ ntypes.c:34:29: warning: size of ‘scheck2’ is 40000 bytes [-Wlarger-than=] short spoints2[DIM0][DIM1], scheck2[DIM0][DIM1]; ^ ntypes.c:35:5: warning: size of ‘ipoints3’ is 400000 bytes [-Wlarger-than=] int ipoints3[DIM0][DIM1][5], icheck3[DIM0][DIM1][5]; ^ ntypes.c:35:30: warning: size of ‘icheck3’ is 400000 bytes [-Wlarger-than=] int ipoints3[DIM0][DIM1][5], icheck3[DIM0][DIM1][5]; ^ dtypes.c: In function ‘test_compound_2’: dtypes.c:692:1: warning: assuming pointer wraparound does not occur when comparing P +- C1 with P +- C2 [-Wstrict-overflow] test_compound_2(void) ^ dtypes.c:692:1: warning: assuming pointer wraparound does not occur when comparing P +- C1 with P +- C2 [-Wstrict-overflow] dtransform.c: In function ‘main’: dtransform.c:117:10: warning: size of ‘array’ is 3456 bytes [-Wlarger-than=] TYPE array[ROWS][COLS]; \ ^ dtransform.c:303:5: note: in expansion of macro ‘TEST_TYPE_CONTIG’ TEST_TYPE_CONTIG(dxpl_id_c_to_f, long double, H5T_NATIVE_LDOUBLE, "ldouble", windchillFfloat, 1); ^ dtypes.c: In function ‘test_compound_4’: dtypes.c:950:1: warning: assuming pointer wraparound does not occur when comparing P +- C1 with P +- C2 [-Wstrict-overflow] test_compound_4(void) ^ dtypes.c:950:1: warning: assuming pointer wraparound does not occur when comparing P +- C1 with P +- C2 [-Wstrict-overflow] dtransform.c:183:10: warning: size of ‘array’ is 3456 bytes [-Wlarger-than=] TYPE array[ROWS][COLS]; \ ^ dtransform.c:320:5: note: in expansion of macro ‘TEST_TYPE_CHUNK’ TEST_TYPE_CHUNK(dxpl_id_c_to_f, long double, H5T_NATIVE_LDOUBLE, "ldouble", windchillFfloat, 1); ^ unregister.c: In function ‘test_unregister_filters’: unregister.c:98:17: warning: size of ‘data’ is 80000 bytes [-Wlarger-than=] int data[DSET_DIM1][DSET_DIM2]; ^ vfd.c: In function ‘test_family_member_fapl’: vfd.c:1149:1: warning: stack usage might be 17600 bytes [-Wstack-usage=] test_family_member_fapl(void) ^ vfd.c:1264:1: warning: the frame size of 17520 bytes is larger than 16384 bytes [-Wframe-larger-than=] } /* end test_family_member_fapl() */ ^ unregister.c:83:1: warning: stack usage might be 81296 bytes [-Wstack-usage=] test_unregister_filters(hid_t fapl_id) ^ unregister.c:251:1: warning: the frame size of 81216 bytes is larger than 16384 bytes [-Wframe-larger-than=] } ^ error_test.c:41:8: warning: size of ‘ipoints2’ is 80000 bytes [-Wlarger-than=] int ipoints2[DIM0][DIM1], icheck2[DIM0][DIM1]; ^ error_test.c:41:30: warning: size of ‘icheck2’ is 80000 bytes [-Wlarger-than=] int ipoints2[DIM0][DIM1], icheck2[DIM0][DIM1]; ^ vfd.c: In function ‘test_family’: vfd.c:856:1: warning: stack usage might be 17632 bytes [-Wstack-usage=] test_family(void) ^ err_compat.c:38:8: warning: size of ‘ipoints2’ is 80000 bytes [-Wlarger-than=] int ipoints2[DIM0][DIM1], icheck2[DIM0][DIM1]; ^ err_compat.c:38:30: warning: size of ‘icheck2’ is 80000 bytes [-Wlarger-than=] int ipoints2[DIM0][DIM1], icheck2[DIM0][DIM1]; ^ vfd.c:1021:1: warning: the frame size of 17552 bytes is larger than 16384 bytes [-Wframe-larger-than=] } ^ vfd.c: In function ‘test_multi_compat’: vfd.c:1562:1: warning: stack usage might be 71280 bytes [-Wstack-usage=] test_multi_compat(void) ^ vfd.c:1712:1: warning: the frame size of 71200 bytes is larger than 16384 bytes [-Wframe-larger-than=] } ^ vfd.c: In function ‘test_multi’: vfd.c:1320:1: warning: stack usage might be 69376 bytes [-Wstack-usage=] test_multi(void) ^ vfd.c:1538:1: warning: the frame size of 69296 bytes is larger than 16384 bytes [-Wframe-larger-than=] } /* end test_multi() */ ^ dsets.c: In function ‘test_nbit_int_size’: dsets.c:4129:1: warning: stack usage might be 80144 bytes [-Wstack-usage=] test_nbit_int_size(hid_t file) ^ dsets.c:4278:1: warning: the frame size of 80064 bytes is larger than 16384 bytes [-Wframe-larger-than=] } /* end test_nbit_int_size() */ ^ dsets.c: In function ‘test_nbit_flt_size’: dsets.c:4297:1: warning: stack usage might be 80144 bytes [-Wstack-usage=] test_nbit_flt_size(hid_t file) ^ dsets.c:4475:1: warning: the frame size of 80064 bytes is larger than 16384 bytes [-Wframe-larger-than=] } /* end test_nbit_flt_size() */ ^ del_many_dense_attrs.c: In function ‘main’: del_many_dense_attrs.c:73:20: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] char *basename="attr"; /* Name prefix for attribute */ ^ dsets.c: In function ‘test_userblock_offset’: dsets.c:643:1: warning: stack usage might be 81152 bytes [-Wstack-usage=] test_userblock_offset(const char *env_h5_drvr, hid_t fapl, hbool_t new_format) ^ dsets.c:736:1: warning: the frame size of 81072 bytes is larger than 16384 bytes [-Wframe-larger-than=] } /* end test_userblock_offset() */ ^ dtypes.c: In function ‘main’: dtypes.c:7836:1: warning: assuming pointer wraparound does not occur when comparing P +- C1 with P +- C2 [-Wstrict-overflow] main(void) ^ dtypes.c:7836:1: warning: assuming pointer wraparound does not occur when comparing P +- C1 with P +- C2 [-Wstrict-overflow] vds.c: In function ‘test_basic_io’: vds.c:1387:1: warning: assuming pointer wraparound does not occur when comparing P +- C1 with P +- C2 [-Wstrict-overflow] test_basic_io(unsigned config, hid_t fapl) ^ vds.c:1387:1: warning: assuming pointer wraparound does not occur when comparing P +- C1 with P +- C2 [-Wstrict-overflow] vds.c:1387:1: warning: assuming pointer wraparound does not occur when comparing P +- C1 with P +- C2 [-Wstrict-overflow] vds.c:1387:1: warning: assuming pointer wraparound does not occur when comparing P +- C1 with P +- C2 [-Wstrict-overflow] dsets.c: In function ‘test_missing_chunk’: dsets.c:6854:1: warning: stack usage might be 81216 bytes [-Wstack-usage=] test_missing_chunk(hid_t file) ^ dsets.c:7027:1: warning: the frame size of 81120 bytes is larger than 16384 bytes [-Wframe-larger-than=] } /* end test_missing_chunk() */ ^ vds_env.c: In function ‘test_vds_prefix_second’: vds_env.c:51:1: warning: stack usage might be 9696 bytes [-Wstack-usage=] test_vds_prefix_second(unsigned config, hid_t fapl) ^ In file included from filter_plugin.c:17:0: H5srcdir.h:52:20: warning: ‘H5_get_srcdir_filename’ defined but not used [-Wunused-function] static const char *H5_get_srcdir_filename(const char *filename) ^ dsets.c: In function ‘filter_bogus2’: dsets.c:1586:18: warning: cannot optimize loop, the loop counter may overflow [-Wunsafe-loop-optimizations] while(buf_left>0) { ^ cache.c: In function ‘check_metadata_cork’: cache.c:33742:1: warning: stack usage is 16896 bytes [-Wstack-usage=] check_metadata_cork(hbool_t fill_via_insertion, unsigned paged) ^ cache.c:34453:1: warning: the frame size of 16832 bytes is larger than 16384 bytes [-Wframe-larger-than=] } /* check_metadata_cork() */ ^ vds.c:1387:1: warning: stack usage might be 11872 bytes [-Wstack-usage=] dsets.c: In function ‘test_fixed_array’: dsets.c:9409:1: warning: stack usage might be 53456 bytes [-Wstack-usage=] test_fixed_array(hid_t fapl) ^ dsets.c:9805:1: warning: the frame size of 53376 bytes is larger than 16384 bytes [-Wframe-larger-than=] } /* end test_fixed_array() */ ^ cache.c: In function ‘check_metadata_blizzard_absence’: cache.c:28158:1: warning: stack usage is 16896 bytes [-Wstack-usage=] check_metadata_blizzard_absence(hbool_t fill_via_insertion, unsigned paged) ^ cache.c:28987:1: warning: the frame size of 16832 bytes is larger than 16384 bytes [-Wframe-larger-than=] } /* check_metadata_blizzard_absence() */ ^ vds.c: In function ‘test_vds_prefix_first’: vds.c:1135:1: warning: stack usage might be 8672 bytes [-Wstack-usage=] test_vds_prefix_first(unsigned config, hid_t fapl) ^ tselect.c: In function ‘test_select_hyper_contig_dr__run_test.constprop’: tselect.c:2255:21: warning: cannot optimize possibly infinite loops [-Wunsafe-loop-optimizations] for(; s <= stop_index; s++) { ^ tselect.c:2016:21: warning: cannot optimize possibly infinite loops [-Wunsafe-loop-optimizations] for(; s <= stop_index; s++) { ^ tselect.c: In function ‘test_select’: tselect.c:11727:9: warning: cannot optimize possibly infinite loops [-Wunsafe-loop-optimizations] for(small_rank = 1; small_rank <= large_rank; small_rank++) { ^ tselect.c:11181:9: warning: cannot optimize possibly infinite loops [-Wunsafe-loop-optimizations] for(small_rank = 1; small_rank <= large_rank; small_rank++) { ^ tselect.c:10696:9: warning: cannot optimize possibly infinite loops [-Wunsafe-loop-optimizations] for(small_rank = 1; small_rank <= large_rank; small_rank++) { ^ vds.c: In function ‘main’: vds.c:12148:1: warning: stack usage might be 12464 bytes [-Wstack-usage=] main(void) ^ t_mpi.c: In function ‘test_mpio_overlap_writes’: t_mpi.c:49:19: warning: size of ‘buf’ is 4093 bytes [-Wlarger-than=] unsigned char buf[4093]; /* use some prime number for size */ ^ t_2Gio.c:84:9: warning: size of ‘filenames’ is 12288 bytes [-Wlarger-than=] char filenames[NFILENAME][PATH_MAX]; ^ t_mdset.c: In function ‘multiple_dset_write’: t_mdset.c:148:5: warning: unsuffixed float constant [-Wunsuffixed-float-constants] double fill=1.0; /* Fill value */ ^ t_file.c: In function ‘test_split_comm_access’: t_file.c:109:31: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] mrc = MPI_File_delete((char *)filename, info); ^ t_span_tree.c:926:5: warning: "LOWER_DIM_SIZE_COMP_TEST__RUN_TEST__DEBUG" is not defined [-Wundef] #if LOWER_DIM_SIZE_COMP_TEST__RUN_TEST__DEBUG ^ t_coll_chunk.c: In function ‘coll_chunktest’: t_coll_chunk.c:692:3: warning: switch missing default case [-Wswitch-default] switch (file_selection) { ^ t_coll_chunk.c:715:3: warning: switch missing default case [-Wswitch-default] switch (mem_selection) { ^ t_cache.c:45:9: warning: size of ‘filenames’ is 8192 bytes [-Wlarger-than=] char filenames[NFILENAME][PATH_MAX]; ^ t_cache.c:201:14: warning: size of ‘data’ is 36000000 bytes [-Wlarger-than=] struct datum data[NUM_DATA_ENTRIES]; ^ t_cache.c:242:5: warning: size of ‘data_index’ is 400000 bytes [-Wlarger-than=] int data_index[NUM_DATA_ENTRIES]; ^ t_pflush1.c:32:13: warning: size of ‘data_g’ is 40000 bytes [-Wlarger-than=] static int data_g[100][100]; ^ t_coll_chunk.c:947:3: warning: switch missing default case [-Wswitch-default] switch (file_selection) { ^ t_coll_chunk.c:970:3: warning: switch missing default case [-Wswitch-default] switch (mem_selection) { ^ t_bigio.c: In function ‘coll_chunktest’: t_bigio.c:1520:3: warning: switch missing default case [-Wswitch-default] switch (file_selection) { ^ t_cache.c: In function ‘datum_image_len’: t_cache.c:2454:17: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] entry_ptr = (struct datum *)thing; ^ t_bigio.c:1543:3: warning: switch missing default case [-Wswitch-default] switch (mem_selection) { ^ t_span_tree.c: In function ‘link_chunk_collective_io_test’: t_span_tree.c:2725:5: warning: unsuffixed float constant [-Wunsuffixed-float-constants] local_data_read[i] = 0.0; ^ t_span_tree.c:2726:5: warning: unsuffixed float constant [-Wunsuffixed-float-constants] expected_value += 1.0; ^ t_span_tree.c:2785:9: warning: unsuffixed float constant [-Wunsuffixed-float-constants] if ( diff >= 0.001 ) { ^ testphdf5.c:51:9: warning: size of ‘filenames’ is 8192 bytes [-Wlarger-than=] char filenames[NFILENAME][PATH_MAX]; ^ t_bigio.c:1779:3: warning: switch missing default case [-Wswitch-default] switch (file_selection) { ^ t_bigio.c:1802:3: warning: switch missing default case [-Wswitch-default] switch (mem_selection) { ^ t_pflush2.c:33:13: warning: size of ‘data_g’ is 40000 bytes [-Wlarger-than=] static int data_g[100][100]; ^ t_mdset.c: In function ‘rr_obj_hdr_flush_confusion_writer’: t_mdset.c:2086:13: warning: unsuffixed float constant [-Wunsuffixed-float-constants] data[j] *= 10.0; ^ t_mdset.c:2140:13: warning: unsuffixed float constant [-Wunsuffixed-float-constants] att[j] /= 10.0; ^ t_mdset.c:2198:13: warning: unsuffixed float constant [-Wunsuffixed-float-constants] lg_att[j] /= 10.0; ^ t_mdset.c:2240:13: warning: unsuffixed float constant [-Wunsuffixed-float-constants] lg_att[j] /= 10.0; ^ t_mdset.c:1968:9: warning: variable ‘mrc’ set but not used [-Wunused-but-set-variable] int mrc; /* mpi error code */ ^ t_shapesame.c:4606:9: warning: size of ‘filenames’ is 8192 bytes [-Wlarger-than=] char filenames[NFILENAME][PATH_MAX]; ^ t_mdset.c: In function ‘rr_obj_hdr_flush_confusion_reader’: t_mdset.c:2494:25: warning: unsuffixed float constant [-Wunsuffixed-float-constants] data[j] *= 10.0; ^ t_mdset.c:2556:29: warning: unsuffixed float constant [-Wunsuffixed-float-constants] att[j] /= 10.0; ^ t_mdset.c:2609:29: warning: unsuffixed float constant [-Wunsuffixed-float-constants] lg_att[j] /= 10.0; ^ t_cache.c: In function ‘smoke_check_6’: t_cache.c:7269:13: warning: unsuffixed float constant [-Wunsuffixed-float-constants] HDassert((double)cache_ptr->max_cache_size*0.8 > cache_ptr->coll_list_size); ^ t_cache.c:7290:13: warning: unsuffixed float constant [-Wunsuffixed-float-constants] HDassert((double)cache_ptr->max_cache_size*0.8 > cache_ptr->coll_list_size); ^ t_cache.c:7320:13: warning: unsuffixed float constant [-Wunsuffixed-float-constants] HDassert((double)cache_ptr->max_cache_size*0.8 > cache_ptr->coll_list_size); ^ t_cache.c:7341:13: warning: unsuffixed float constant [-Wunsuffixed-float-constants] HDassert((double)cache_ptr->max_cache_size*0.8 > cache_ptr->coll_list_size); ^ t_mpi.c: In function ‘main’: t_mpi.c:344:13: warning: cannot optimize possibly infinite loops [-Wunsafe-loop-optimizations] for (i = ntimes - 2; i <= ntimes; i++) { ^ t_mpi.c:298:13: warning: cannot optimize possibly infinite loops [-Wunsafe-loop-optimizations] for (i = ntimes - 2; i <= ntimes; i++) { ^ t_mdset.c: In function ‘independent_group_read’: t_mdset.c:980:9: warning: cannot optimize loop, the loop counter may overflow [-Wunsafe-loop-optimizations] for(m=0; m *}’ but argument is of type ‘const H5R_ref_t * {aka const struct *}’ H5_DLL hid_t H5Ropen_object(H5R_ref_t *ref_ptr, hid_t rapl_id, hid_t oapl_id); ^ h5tools.c:1442:67: warning: passing argument 1 of ‘H5Ropen_region’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] if((region_space = H5Ropen_region((const H5R_ref_t *)mem, H5P_DEFAULT, H5P_DEFAULT)) >= 0) { ^ In file included from ../../src/hdf5.h:37:0, from h5tools.h:23, from h5tools.c:19: ../../src/H5Rpublic.h:115:17: note: expected ‘H5R_ref_t * {aka struct *}’ but argument is of type ‘const H5R_ref_t * {aka const struct *}’ H5_DLL hid_t H5Ropen_region(H5R_ref_t *ref_ptr, hid_t rapl_id, hid_t oapl_id); ^ h5tools_utils.c: In function ‘h5tools_set_configured_fapl’: h5tools_utils.c:1293:40: warning: unused parameter ‘fapl_t_ptr’ [-Wunused-parameter] void *fapl_t_ptr) ^ h5tools_dump.c: In function ‘h5tools_dump_data’: h5tools_dump.c:4094:46: warning: passing argument 1 of ‘H5Rget_obj_type3’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] if (H5Rget_obj_type3((const H5R_ref_t *)&ref_buf[i], H5P_DEFAULT, &obj_type) >= 0) { ^ In file included from ../../src/hdf5.h:37:0, from h5tools.h:23, from h5tools_dump.c:19: ../../src/H5Rpublic.h:119:17: note: expected ‘H5R_ref_t * {aka struct *}’ but argument is of type ‘const H5R_ref_t * {aka const struct *}’ H5_DLL herr_t H5Rget_obj_type3(H5R_ref_t *ref_ptr, hid_t rapl_id, H5O_type_t *obj_type); ^ h5tools_dump.c:4097:69: warning: passing argument 1 of ‘H5Ropen_object’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] if((new_obj_id = H5Ropen_object((const H5R_ref_t *)&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) { ^ In file included from ../../src/hdf5.h:37:0, from h5tools.h:23, from h5tools_dump.c:19: ../../src/H5Rpublic.h:114:17: note: expected ‘H5R_ref_t * {aka struct *}’ but argument is of type ‘const H5R_ref_t * {aka const struct *}’ H5_DLL hid_t H5Ropen_object(H5R_ref_t *ref_ptr, hid_t rapl_id, hid_t oapl_id); ^ h5tools_dump.c:4122:57: warning: passing argument 1 of ‘H5Ropen_object’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] if((new_obj_id = H5Ropen_object((const H5R_ref_t *)&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) { ^ In file included from ../../src/hdf5.h:37:0, from h5tools.h:23, from h5tools_dump.c:19: ../../src/H5Rpublic.h:114:17: note: expected ‘H5R_ref_t * {aka struct *}’ but argument is of type ‘const H5R_ref_t * {aka const struct *}’ H5_DLL hid_t H5Ropen_object(H5R_ref_t *ref_ptr, hid_t rapl_id, hid_t oapl_id); ^ h5tools_dump.c:4134:46: warning: passing argument 1 of ‘H5Rget_obj_type3’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] if (H5Rget_obj_type3((const H5R_ref_t *)&ref_buf[i], H5P_DEFAULT, &obj_type) >= 0) { ^ In file included from ../../src/hdf5.h:37:0, from h5tools.h:23, from h5tools_dump.c:19: ../../src/H5Rpublic.h:119:17: note: expected ‘H5R_ref_t * {aka struct *}’ but argument is of type ‘const H5R_ref_t * {aka const struct *}’ H5_DLL herr_t H5Rget_obj_type3(H5R_ref_t *ref_ptr, hid_t rapl_id, H5O_type_t *obj_type); ^ h5tools_dump.c:4140:69: warning: passing argument 1 of ‘H5Ropen_object’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] if((new_obj_id = H5Ropen_object((const H5R_ref_t *)&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) { ^ In file included from ../../src/hdf5.h:37:0, from h5tools.h:23, from h5tools_dump.c:19: ../../src/H5Rpublic.h:114:17: note: expected ‘H5R_ref_t * {aka struct *}’ but argument is of type ‘const H5R_ref_t * {aka const struct *}’ H5_DLL hid_t H5Ropen_object(H5R_ref_t *ref_ptr, hid_t rapl_id, hid_t oapl_id); ^ h5tools_dump.c:4171:57: warning: passing argument 1 of ‘H5Ropen_object’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] if((new_obj_id = H5Ropen_object((const H5R_ref_t *)&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) < 0) ^ In file included from ../../src/hdf5.h:37:0, from h5tools.h:23, from h5tools_dump.c:19: ../../src/H5Rpublic.h:114:17: note: expected ‘H5R_ref_t * {aka struct *}’ but argument is of type ‘const H5R_ref_t * {aka const struct *}’ H5_DLL hid_t H5Ropen_object(H5R_ref_t *ref_ptr, hid_t rapl_id, hid_t oapl_id); ^ h5tools_dump.c:4174:62: warning: passing argument 1 of ‘H5Ropen_region’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] if((new_obj_sid = H5Ropen_region((const H5R_ref_t *)&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) { ^ In file included from ../../src/hdf5.h:37:0, from h5tools.h:23, from h5tools_dump.c:19: ../../src/H5Rpublic.h:115:17: note: expected ‘H5R_ref_t * {aka struct *}’ but argument is of type ‘const H5R_ref_t * {aka const struct *}’ H5_DLL hid_t H5Ropen_region(H5R_ref_t *ref_ptr, hid_t rapl_id, hid_t oapl_id); ^ h5tools_dump.c:4226:55: warning: passing argument 1 of ‘H5Ropen_attr’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] if((new_obj_id = H5Ropen_attr((const H5R_ref_t *)&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) { ^ In file included from ../../src/hdf5.h:37:0, from h5tools.h:23, from h5tools_dump.c:19: ../../src/H5Rpublic.h:116:17: note: expected ‘H5R_ref_t * {aka struct *}’ but argument is of type ‘const H5R_ref_t * {aka const struct *}’ H5_DLL hid_t H5Ropen_attr(H5R_ref_t *ref_ptr, hid_t rapl_id, hid_t aapl_id); ^ h5diff_array.c: In function ‘character_compare_opt’: h5diff_array.c:2542:19: warning: variable ‘both_zero’ set but not used [-Wunused-but-set-variable] hbool_t both_zero; ^ In file included from ../../src/H5Eprivate.h:23:0, from h5tools_error.h:21, from h5tools.h:24, from h5tools.c:19: h5tools.c: In function ‘h5tools_fopen’: ../../src/H5private.h:1393:31: warning: ‘drivernum’ may be used uninitialized in this function [-Wmaybe-uninitialized] #define HDstrncpy(X,Y,Z) strncpy(X,Y,Z) ^ h5tools.c:544:17: note: ‘drivernum’ was declared here unsigned drivernum; ^ h5diff_common.c: In function ‘parse_command_line’: h5diff_common.c:194:38: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] exclude_node->obj_path = (char*)opt_arg; ^ ph5diff_main.c: In function ‘main’: ph5diff_main.c:64:21: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] MPI_Init(&argc, (char***) &argv); ^ ph5diff_main.c: In function ‘h5diff_exit’: ph5diff_main.c:308:22: warning: parameter ‘status’ set but not used [-Wunused-but-set-parameter] void h5diff_exit(int status) ^ h5ls.c: In function ‘dump_reference’: h5ls.c:1336:38: warning: passing argument 1 of ‘H5Rget_obj_type3’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] if (H5Rget_obj_type3((const H5R_ref_t *)&ref_buf[i], H5P_DEFAULT, &obj_type) >= 0) { ^ In file included from ../../../src/hdf5.h:37:0, from ../../../tools/lib/h5tools.h:23, from h5ls.c:26: ../../../src/H5Rpublic.h:119:17: note: expected ‘H5R_ref_t * {aka struct *}’ but argument is of type ‘const H5R_ref_t * {aka const struct *}’ H5_DLL herr_t H5Rget_obj_type3(H5R_ref_t *ref_ptr, hid_t rapl_id, H5O_type_t *obj_type); ^ h5ls.c:1339:61: warning: passing argument 1 of ‘H5Ropen_object’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] if((new_obj_id = H5Ropen_object((const H5R_ref_t *)&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) { ^ In file included from ../../../src/hdf5.h:37:0, from ../../../tools/lib/h5tools.h:23, from h5ls.c:26: ../../../src/H5Rpublic.h:114:17: note: expected ‘H5R_ref_t * {aka struct *}’ but argument is of type ‘const H5R_ref_t * {aka const struct *}’ H5_DLL hid_t H5Ropen_object(H5R_ref_t *ref_ptr, hid_t rapl_id, hid_t oapl_id); ^ h5ls.c:1366:49: warning: passing argument 1 of ‘H5Ropen_object’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] if((new_obj_id = H5Ropen_object((const H5R_ref_t *)&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) { ^ In file included from ../../../src/hdf5.h:37:0, from ../../../tools/lib/h5tools.h:23, from h5ls.c:26: ../../../src/H5Rpublic.h:114:17: note: expected ‘H5R_ref_t * {aka struct *}’ but argument is of type ‘const H5R_ref_t * {aka const struct *}’ H5_DLL hid_t H5Ropen_object(H5R_ref_t *ref_ptr, hid_t rapl_id, hid_t oapl_id); ^ h5ls.c:1380:38: warning: passing argument 1 of ‘H5Rget_obj_type3’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] if (H5Rget_obj_type3((const H5R_ref_t *)&ref_buf[i], H5P_DEFAULT, &obj_type) >= 0) { ^ In file included from ../../../src/hdf5.h:37:0, from ../../../tools/lib/h5tools.h:23, from h5ls.c:26: ../../../src/H5Rpublic.h:119:17: note: expected ‘H5R_ref_t * {aka struct *}’ but argument is of type ‘const H5R_ref_t * {aka const struct *}’ H5_DLL herr_t H5Rget_obj_type3(H5R_ref_t *ref_ptr, hid_t rapl_id, H5O_type_t *obj_type); ^ h5ls.c:1386:61: warning: passing argument 1 of ‘H5Ropen_object’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] if((new_obj_id = H5Ropen_object((const H5R_ref_t *)&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) { ^ In file included from ../../../src/hdf5.h:37:0, from ../../../tools/lib/h5tools.h:23, from h5ls.c:26: ../../../src/H5Rpublic.h:114:17: note: expected ‘H5R_ref_t * {aka struct *}’ but argument is of type ‘const H5R_ref_t * {aka const struct *}’ H5_DLL hid_t H5Ropen_object(H5R_ref_t *ref_ptr, hid_t rapl_id, hid_t oapl_id); ^ h5ls.c:1419:49: warning: passing argument 1 of ‘H5Ropen_object’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] if((new_obj_id = H5Ropen_object((const H5R_ref_t *)&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) < 0) ^ In file included from ../../../src/hdf5.h:37:0, from ../../../tools/lib/h5tools.h:23, from h5ls.c:26: ../../../src/H5Rpublic.h:114:17: note: expected ‘H5R_ref_t * {aka struct *}’ but argument is of type ‘const H5R_ref_t * {aka const struct *}’ H5_DLL hid_t H5Ropen_object(H5R_ref_t *ref_ptr, hid_t rapl_id, hid_t oapl_id); ^ h5ls.c:1422:54: warning: passing argument 1 of ‘H5Ropen_region’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] if((new_obj_sid = H5Ropen_region((const H5R_ref_t *)&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) { ^ In file included from ../../../src/hdf5.h:37:0, from ../../../tools/lib/h5tools.h:23, from h5ls.c:26: ../../../src/H5Rpublic.h:115:17: note: expected ‘H5R_ref_t * {aka struct *}’ but argument is of type ‘const H5R_ref_t * {aka const struct *}’ H5_DLL hid_t H5Ropen_region(H5R_ref_t *ref_ptr, hid_t rapl_id, hid_t oapl_id); ^ h5ls.c:1474:47: warning: passing argument 1 of ‘H5Ropen_attr’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] if((new_obj_id = H5Ropen_attr((const H5R_ref_t *)&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) { ^ In file included from ../../../src/hdf5.h:37:0, from ../../../tools/lib/h5tools.h:23, from h5ls.c:26: ../../../src/H5Rpublic.h:116:17: note: expected ‘H5R_ref_t * {aka struct *}’ but argument is of type ‘const H5R_ref_t * {aka const struct *}’ H5_DLL hid_t H5Ropen_attr(H5R_ref_t *ref_ptr, hid_t rapl_id, hid_t aapl_id); ^ h5import.c: In function ‘main’: h5import.c:75:21: warning: size of ‘opt’ is 173544 bytes [-Wlarger-than=] struct Options opt; ^ h5import.c:73:5: warning: stack usage might be 174960 bytes [-Wstack-usage=] int main(int argc, char *argv[]) ^ h5import.c:269:1: warning: the frame size of 174880 bytes is larger than 16384 bytes [-Wframe-larger-than=] } ^ h5dumpgentest.c: In function ‘gent_dataset’: h5dumpgentest.c:467:12: warning: size of ‘dset2’ is 4800 bytes [-Wlarger-than=] double dset2[30][20]; ^ h5dumpgentest.c: In function ‘gent_str’: h5dumpgentest.c:1776:16: warning: size of ‘comp1’ is 12888 bytes [-Wlarger-than=] compound_t comp1[3][6]; ^ h5dumpgentest.c: In function ‘gent_multi’: h5dumpgentest.c:3750:10: warning: size of ‘sv’ is 7168 bytes [-Wlarger-than=] char sv[H5FD_MEM_NTYPES][1024]; ^ h5dumpgentest.c: In function ‘gent_packedbits’: h5dumpgentest.c:7179:14: warning: size of ‘dsetu64’ is 4096 bytes [-Wlarger-than=] uint64_t dsetu64[F66_XDIM][F66_YDIM64], valu64bits; ^ h5dumpgentest.c:7183:13: warning: size of ‘dset64’ is 4096 bytes [-Wlarger-than=] int64_t dset64[F66_XDIM][F66_YDIM64], val64bits; ^ h5dumpgentest.c: In function ‘gent_attr_intsize’: h5dumpgentest.c:7360:14: warning: size of ‘dsetu64’ is 4096 bytes [-Wlarger-than=] uint64_t dsetu64[F66_XDIM][F66_YDIM64], valu64bits; ^ h5dumpgentest.c:7364:13: warning: size of ‘dset64’ is 4096 bytes [-Wlarger-than=] int64_t dset64[F66_XDIM][F66_YDIM64], val64bits; ^ h5dumpgentest.c: In function ‘gent_compound_attr_intsizes’: h5dumpgentest.c:7965:18: warning: size of ‘Array1’ is 45568 bytes [-Wlarger-than=] Array1Struct Array1[F70_LENGTH]; ^ h5dumpgentest.c: In function ‘gent_intscalars’: h5dumpgentest.c:8373:14: warning: size of ‘dsetu64’ is 4096 bytes [-Wlarger-than=] uint64_t dsetu64[F73_XDIM][F73_YDIM64], valu64bits; ^ h5dumpgentest.c:8377:13: warning: size of ‘dset64’ is 4096 bytes [-Wlarger-than=] int64_t dset64[F73_XDIM][F73_YDIM64], val64bits; ^ h5dumpgentest.c: In function ‘gent_attr_intscalars’: h5dumpgentest.c:8571:14: warning: size of ‘dsetu64’ is 4096 bytes [-Wlarger-than=] uint64_t dsetu64[F73_XDIM][F73_YDIM64], valu64bits; ^ h5dumpgentest.c:8575:13: warning: size of ‘dset64’ is 4096 bytes [-Wlarger-than=] int64_t dset64[F73_XDIM][F73_YDIM64], val64bits; ^ h5dumpgentest.c: In function ‘gent_intattrscalars’: h5dumpgentest.c:9310:14: warning: size of ‘dsetu64’ is 4096 bytes [-Wlarger-than=] uint64_t dsetu64[F73_XDIM][F73_YDIM64], valu64bits; ^ h5dumpgentest.c:9314:13: warning: size of ‘dset64’ is 4096 bytes [-Wlarger-than=] int64_t dset64[F73_XDIM][F73_YDIM64], val64bits; ^ h5dumpgentest.c: In function ‘gent_intsattrs’: h5dumpgentest.c:9542:14: warning: size of ‘dsetu64’ is 4096 bytes [-Wlarger-than=] uint64_t dsetu64[F66_XDIM][F66_YDIM64], asetu64[F66_XDIM*F66_YDIM64], valu64bits; ^ h5dumpgentest.c:9542:45: warning: size of ‘asetu64’ is 4096 bytes [-Wlarger-than=] uint64_t dsetu64[F66_XDIM][F66_YDIM64], asetu64[F66_XDIM*F66_YDIM64], valu64bits; ^ h5dumpgentest.c:9546:13: warning: size of ‘dset64’ is 4096 bytes [-Wlarger-than=] int64_t dset64[F66_XDIM][F66_YDIM64], aset64[F66_XDIM*F66_YDIM64], val64bits; ^ h5dumpgentest.c:9546:43: warning: size of ‘aset64’ is 4096 bytes [-Wlarger-than=] int64_t dset64[F66_XDIM][F66_YDIM64], aset64[F66_XDIM*F66_YDIM64], val64bits; ^ h5dumpgentest.c: In function ‘gent_intsfourdims’: h5dumpgentest.c:9955:14: warning: size of ‘dset1’ is 7680 bytes [-Wlarger-than=] uint32_t dset1[F81_ZDIM][F81_YDIM][F81_XDIM][F81_WDIM]; ^ h5dumpgentest.c: In function ‘gent_attr_intsize’: h5dumpgentest.c:7353:1: warning: stack usage is 11488 bytes [-Wstack-usage=] gent_attr_intsize(void) ^ h5dumpgentest.c: In function ‘gent_packedbits’: h5dumpgentest.c:7172:1: warning: stack usage might be 11488 bytes [-Wstack-usage=] gent_packedbits(void) ^ h5dumpgentest.c: In function ‘gent_intsattrs’: h5dumpgentest.c:9535:1: warning: stack usage might be 22944 bytes [-Wstack-usage=] gent_intsattrs(void) ^ h5dumpgentest.c:9790:1: warning: the frame size of 22864 bytes is larger than 16384 bytes [-Wframe-larger-than=] } ^ h5dumpgentest.c: In function ‘gent_intscalars’: h5dumpgentest.c:8366:1: warning: stack usage might be 11488 bytes [-Wstack-usage=] gent_intscalars(void) ^ h5dumpgentest.c: In function ‘gent_attr_intscalars’: h5dumpgentest.c:8564:1: warning: stack usage is 11488 bytes [-Wstack-usage=] gent_attr_intscalars(void) ^ h5dumpgentest.c: In function ‘gent_intattrscalars’: h5dumpgentest.c:9303:1: warning: stack usage might be 11504 bytes [-Wstack-usage=] gent_intattrscalars(void) ^ h5dumpgentest.c: In function ‘gent_compound_attr_intsizes’: h5dumpgentest.c:7929:13: warning: stack usage is 45792 bytes [-Wstack-usage=] static void gent_compound_attr_intsizes(void) { ^ h5dumpgentest.c:8204:1: warning: the frame size of 45728 bytes is larger than 16384 bytes [-Wframe-larger-than=] } ^ h5dumpgentest.c: In function ‘gent_str’: h5dumpgentest.c:1741:13: warning: stack usage might be 13664 bytes [-Wstack-usage=] static void gent_str(void) { ^ h5repart_gentest.c:28:12: warning: size of ‘buf’ is 16384 bytes [-Wlarger-than=] static int buf[FAMILY_NUMBER][FAMILY_SIZE]; ^ h5clear_gentest.c: In function ‘gen_cache_image_file’: h5clear_gentest.c:65:9: warning: size of ‘buf’ is 20000 bytes [-Wlarger-than=] int buf[50][100]; /* Buffer for data to write */ ^ h5clear_gentest.c: In function ‘gen_cache_image_file.constprop’: h5clear_gentest.c:57:1: warning: stack usage might be 20192 bytes [-Wstack-usage=] gen_cache_image_file(const char *fname) ^ h5clear_gentest.c:136:1: warning: the frame size of 20112 bytes is larger than 16384 bytes [-Wframe-larger-than=] } /* gen_cache_image_file() */ ^ h5importtest.c: In function ‘main’: h5importtest.c:73:12: warning: cast discards ‘volatile’ qualifier from pointer target type [-Wcast-qual] if ((*((uint8_t*)(&ibyte))) == 0x67) ^ h5repacktst.c: In function ‘make_deflate’: h5repacktst.c:2551:16: warning: size of ‘buf’ is 3200 bytes [-Wlarger-than=] int buf[DIM1][DIM2]; ^ h5repacktst.c: In function ‘make_shuffle’: h5repacktst.c:2626:14: warning: size of ‘buf’ is 3200 bytes [-Wlarger-than=] int buf[DIM1][DIM2]; ^ h5repacktst.c: In function ‘make_fletcher32’: h5repacktst.c:2691:14: warning: size of ‘buf’ is 3200 bytes [-Wlarger-than=] int buf[DIM1][DIM2]; ^ h5repacktst.c: In function ‘make_nbit’: h5repacktst.c:2760:14: warning: size of ‘buf’ is 3200 bytes [-Wlarger-than=] int buf[DIM1][DIM2]; ^ h5repacktst.c: In function ‘make_scaleoffset’: h5repacktst.c:2841:14: warning: size of ‘buf’ is 3200 bytes [-Wlarger-than=] int buf[DIM1][DIM2]; ^ h5repacktst.c: In function ‘make_all_filters’: h5repacktst.c:2920:14: warning: size of ‘buf’ is 3200 bytes [-Wlarger-than=] int buf[DIM1][DIM2]; ^ h5repacktst.c: In function ‘make_layout’: h5repacktst.c:3179:14: warning: size of ‘buf’ is 3200 bytes [-Wlarger-than=] int buf[DIM1][DIM2]; ^ h5repacktst.c: In function ‘make_layout3’: h5repacktst.c:3375:14: warning: size of ‘buf1’ is 240000 bytes [-Wlarger-than=] int buf1[DIM1_L3][DIM2_L3]; ^ h5repacktst.c:3362:5: warning: stack usage is 241056 bytes [-Wstack-usage=] int make_layout3(hid_t loc_id) ^ h5repacktst.c:3485:1: warning: the frame size of 240992 bytes is larger than 16384 bytes [-Wframe-larger-than=] } ^ dynlib_rpk.c: In function ‘H5Z_filter_dynlib1’: dynlib_rpk.c:80:14: warning: cannot optimize loop, the loop counter may overflow [-Wunsafe-loop-optimizations] while(buf_left > 0) { ^ dynlib_rpk.c:87:14: warning: cannot optimize loop, the loop counter may overflow [-Wunsafe-loop-optimizations] while(buf_left > 0) { ^ dynlib_vrpk.c: In function ‘H5Z_filter_dynlib4’: dynlib_vrpk.c:87:14: warning: cannot optimize loop, the loop counter may overflow [-Wunsafe-loop-optimizations] while(buf_left > 0) { ^ dynlib_vrpk.c:94:14: warning: cannot optimize loop, the loop counter may overflow [-Wunsafe-loop-optimizations] while(buf_left > 0) { ^ In file included from h5jamgentest.c:25:0: h5jamgentest.c: In function ‘create_textfile’: ../../../src/H5private.h:1555:31: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] #define HDwrite(F,M,Z) write(F,M,Z) ^ h5jamgentest.c:309:5: note: in expansion of macro ‘HDwrite’ HDwrite(fd, buf, size); ^ h5jamgentest.c: In function ‘gent_ub’: ../../../src/H5private.h:1555:31: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] #define HDwrite(F,M,Z) write(F,M,Z) ^ h5jamgentest.c:285:5: note: in expansion of macro ‘HDwrite’ HDwrite(fd, buf, ub_size); ^ In file included from h5stat_gentest.c:24:0: h5stat_gentest.c: In function ‘gen_err_refcount’: ../../../src/H5private.h:1555:31: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] #define HDwrite(F,M,Z) write(F,M,Z) ^ h5stat_gentest.c:491:9: note: in expansion of macro ‘HDwrite’ HDwrite(fd, &val, 2); ^ sio_perf.c: In function ‘parse_command_line’: sio_perf.c:987:36: warning: to be safe all intermediate pointers in cast from ‘char **’ to ‘const char **’ must be ‘const’ qualified [-Wcast-qual] while ((opt = get_option(argc, (const char **)argv, s_opts, l_opts)) != EOF) { ^ pio_engine.c: In function ‘do_pio’: pio_engine.c:152:17: warning: size of ‘fname’ is 4096 bytes [-Wlarger-than=] char fname[FILENAME_MAX]; ^ pio_engine.c: In function ‘do_write’: pio_engine.c:1198:44: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] mpi_file_type, (char*)"native", h5_io_info_g); ^ pio_engine.c:1320:46: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] mpi_collective_type, (char *)"native", h5_io_info_g); ^ sio_engine.c: In function ‘do_sio’: perf.c: In function ‘main’: sio_engine.c:141:17: warning: size of ‘fname’ is 4096 bytes [-Wlarger-than=] char fname[FILENAME_MAX]; /* test file name */ ^ perf.c:147:5: warning: "H5_HAVE_SETENV" is not defined [-Wundef] #if H5_HAVE_SETENV ^ chunk_cache.c: In function ‘create_dset1’: chunk_cache.c:113:18: warning: size of ‘data’ is 324000 bytes [-Wlarger-than=] int data[DSET1_DIM1][DSET1_DIM2]; /* data for writing */ ^ chunk_cache.c: In function ‘create_dset2’: chunk_cache.c:174:18: warning: size of ‘data’ is 720000 bytes [-Wlarger-than=] int data[DSET2_DIM1][DSET2_DIM2]; /* data for writing */ ^ perf.c:366:8: warning: unsuffixed float constant [-Wunsuffixed-float-constants] read_bw = (double)((int64_t)(opt_block*nprocs*opt_iter))/(max_read_tim*1000000.0); ^ perf.c:367:8: warning: unsuffixed float constant [-Wunsuffixed-float-constants] write_bw = (double)((int64_t)(opt_block*nprocs*opt_iter))/(max_write_tim*1000000.0); ^ perf.c:390:5: warning: "H5_HAVE_SETENV" is not defined [-Wundef] #if H5_HAVE_SETENV ^ pio_engine.c: In function ‘do_read’: pio_engine.c:2143:44: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] mpi_file_type, (char*)"native", h5_io_info_g); ^ pio_engine.c:2265:46: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] mpi_collective_type, (char *)"native", h5_io_info_g); ^ sio_engine.c: In function ‘set_vfd’: sio_engine.c:1167:14: warning: size of ‘sv’ is 7168 bytes [-Wlarger-than=] char sv[H5FD_MEM_NTYPES][1024]; ^ zip_perf.c: In function ‘main’: zip_perf.c:566:36: warning: to be safe all intermediate pointers in cast from ‘char **’ to ‘const char **’ must be ‘const’ qualified [-Wcast-qual] while ((opt = get_option(argc, (const char **)argv, s_opts, l_opts)) > 0) { ^ pio_perf.c: In function ‘run_test’: pio_perf.c:545:5: warning: unsuffixed float constant [-Wunsuffixed-float-constants] minmax write_mpi_mm = {0.0, 0.0, 0.0, 0}; ^ pio_perf.c:545:5: warning: unsuffixed float constant [-Wunsuffixed-float-constants] pio_perf.c:545:5: warning: unsuffixed float constant [-Wunsuffixed-float-constants] pio_perf.c:546:5: warning: unsuffixed float constant [-Wunsuffixed-float-constants] minmax write_mm = {0.0, 0.0, 0.0, 0}; ^ pio_perf.c:546:5: warning: unsuffixed float constant [-Wunsuffixed-float-constants] pio_perf.c:546:5: warning: unsuffixed float constant [-Wunsuffixed-float-constants] pio_perf.c:547:5: warning: unsuffixed float constant [-Wunsuffixed-float-constants] minmax write_gross_mm = {0.0, 0.0, 0.0, 0}; ^ pio_perf.c:547:5: warning: unsuffixed float constant [-Wunsuffixed-float-constants] pio_perf.c:547:5: warning: unsuffixed float constant [-Wunsuffixed-float-constants] pio_perf.c:548:5: warning: unsuffixed float constant [-Wunsuffixed-float-constants] minmax write_raw_mm = {0.0, 0.0, 0.0, 0}; ^ pio_perf.c:548:5: warning: unsuffixed float constant [-Wunsuffixed-float-constants] pio_perf.c:548:5: warning: unsuffixed float constant [-Wunsuffixed-float-constants] pio_perf.c:549:5: warning: unsuffixed float constant [-Wunsuffixed-float-constants] minmax read_mpi_mm = {0.0, 0.0, 0.0, 0}; ^ pio_perf.c:549:5: warning: unsuffixed float constant [-Wunsuffixed-float-constants] pio_perf.c:549:5: warning: unsuffixed float constant [-Wunsuffixed-float-constants] pio_perf.c:550:5: warning: unsuffixed float constant [-Wunsuffixed-float-constants] minmax read_mm = {0.0, 0.0, 0.0, 0}; ^ pio_perf.c:550:5: warning: unsuffixed float constant [-Wunsuffixed-float-constants] pio_perf.c:550:5: warning: unsuffixed float constant [-Wunsuffixed-float-constants] pio_perf.c:551:5: warning: unsuffixed float constant [-Wunsuffixed-float-constants] minmax read_gross_mm = {0.0, 0.0, 0.0, 0}; ^ pio_perf.c:551:5: warning: unsuffixed float constant [-Wunsuffixed-float-constants] pio_perf.c:551:5: warning: unsuffixed float constant [-Wunsuffixed-float-constants] pio_perf.c:552:5: warning: unsuffixed float constant [-Wunsuffixed-float-constants] minmax read_raw_mm = {0.0, 0.0, 0.0, 0}; ^ pio_perf.c:552:5: warning: unsuffixed float constant [-Wunsuffixed-float-constants] pio_perf.c:552:5: warning: unsuffixed float constant [-Wunsuffixed-float-constants] pio_perf.c:553:5: warning: unsuffixed float constant [-Wunsuffixed-float-constants] minmax read_open_mm = {0.0, 0.0, 0.0, 0}; ^ pio_perf.c:553:5: warning: unsuffixed float constant [-Wunsuffixed-float-constants] pio_perf.c:553:5: warning: unsuffixed float constant [-Wunsuffixed-float-constants] pio_perf.c:554:5: warning: unsuffixed float constant [-Wunsuffixed-float-constants] minmax read_close_mm = {0.0, 0.0, 0.0, 0}; ^ pio_perf.c:554:5: warning: unsuffixed float constant [-Wunsuffixed-float-constants] pio_perf.c:554:5: warning: unsuffixed float constant [-Wunsuffixed-float-constants] pio_perf.c:555:5: warning: unsuffixed float constant [-Wunsuffixed-float-constants] minmax write_open_mm = {0.0, 0.0, 0.0, 0}; ^ pio_perf.c:555:5: warning: unsuffixed float constant [-Wunsuffixed-float-constants] pio_perf.c:555:5: warning: unsuffixed float constant [-Wunsuffixed-float-constants] pio_perf.c:556:5: warning: unsuffixed float constant [-Wunsuffixed-float-constants] minmax write_close_mm = {0.0, 0.0, 0.0, 0}; ^ pio_perf.c:556:5: warning: unsuffixed float constant [-Wunsuffixed-float-constants] pio_perf.c:556:5: warning: unsuffixed float constant [-Wunsuffixed-float-constants] pio_perf.c: In function ‘output_results’: pio_perf.c:1019:5: warning: unsuffixed float constant [-Wunsuffixed-float-constants] output_report("Maximum Throughput: %6.2f MB/s", MB_PER_SEC(data_size,total_mm.min)); ^ pio_perf.c:1019:5: warning: unsuffixed float constant [-Wunsuffixed-float-constants] pio_perf.c:1027:19: warning: unsuffixed float constant [-Wunsuffixed-float-constants] MB_PER_SEC(data_size,total_mm.sum / total_mm.num)); ^ pio_perf.c:1027:19: warning: unsuffixed float constant [-Wunsuffixed-float-constants] pio_perf.c:1034:5: warning: unsuffixed float constant [-Wunsuffixed-float-constants] output_report("Minimum Throughput: %6.2f MB/s", MB_PER_SEC(data_size,total_mm.max)); ^ pio_perf.c:1034:5: warning: unsuffixed float constant [-Wunsuffixed-float-constants] pio_perf.c: In function ‘parse_command_line’: pio_perf.c:1294:36: warning: to be safe all intermediate pointers in cast from ‘char **’ to ‘const char **’ must be ‘const’ qualified [-Wcast-qual] while ((opt = get_option(argc, (const char **)argv, s_opts, l_opts)) != EOF) { ^ chunk_cache.c: In function ‘create_dset1’: chunk_cache.c:107:12: warning: stack usage might be 324144 bytes [-Wstack-usage=] static int create_dset1(hid_t file) ^ chunk_cache.c:161:1: warning: the frame size of 324064 bytes is larger than 16384 bytes [-Wframe-larger-than=] } ^ chunk_cache.c: In function ‘create_dset2’: chunk_cache.c:168:12: warning: stack usage might be 720160 bytes [-Wstack-usage=] static int create_dset2(hid_t file) ^ chunk_cache.c:222:1: warning: the frame size of 720080 bytes is larger than 16384 bytes [-Wframe-larger-than=] } ^ pio_engine.c: In function ‘do_write.isra.0’: pio_engine.c:954:26: warning: ‘bytes_begin[1]’ may be used uninitialized in this function [-Wmaybe-uninitialized] posix_file_offset=dset_offset + bytes_begin[0]*snbytes+ ^ pio_perf.c: In function ‘main’: pio_perf.c:462:8: warning: ‘doing_pio’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (doing_pio){ ^ pio_perf.c:434:9: note: ‘doing_pio’ was declared here int doing_pio; /* if this process is doing PIO */ ^ pio_engine.c: In function ‘do_pio’: pio_engine.c:1900:26: warning: ‘bytes_begin[1]’ may be used uninitialized in this function [-Wmaybe-uninitialized] posix_file_offset=dset_offset + bytes_begin[0]*snbytes+ ^ pio_engine.c:1522:17: note: ‘bytes_begin[1]’ was declared here off_t bytes_begin[2]; /*first elmt this process transfer */ ^ H5_buildiface.F90:50:19: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5fortran_types.F90:18:13: USE ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5f90global.F90:43:6: USE H5FORTRAN_TYPES 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5f90global.F90:820:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5f90global.F90:846:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5Ff.c: In function ‘h5fget_fileno_c’: H5Ff.c:663:17: warning: conversion to ‘int_f {aka int}’ from ‘long long unsigned int’ may alter its value [-Wconversion] *fileno = (hsize_t_f)fileno_c; ^ H5Gff.F90:42:6: USE H5GLOBAL 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5Tff.F90:41:6: USE H5GLOBAL 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5VLff.F90:40:6: USE H5GLOBAL 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5Lff.F90:40:6: USE H5GLOBAL 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5Zff.F90:39:6: USE H5GLOBAL 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5Fff.F90:42:6: USE H5GLOBAL 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5VLff.F90:41:6: USE H5fortkit 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5Aff.F90:75:19: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5Aff.F90:77:6: USE H5GLOBAL 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5Iff.F90:43:6: USE H5GLOBAL 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5Rff.F90:43:6: USE H5GLOBAL 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5Lff.F90:1346:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5Sff.F90:43:6: USE H5GLOBAL 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5Lff.F90:1426:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5Rff.F90:344:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5Dff.F90:90:19: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5Dff.F90:91:6: USE H5GLOBAL 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5Rff.F90:453:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5Rff.F90:501:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5Rff.F90:544:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5Rff.F90:585:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5Rff.F90:625:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5Eff.F90:43:6: USE H5GLOBAL 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5Rff.F90:672:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5Rff.F90:721:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5Rff.F90:770:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5Pff.F90:41:19: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5Pff.F90:42:6: USE H5GLOBAL 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5Eff.F90:267:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5Aff.F90:1787:63: SUBROUTINE H5Aread_char_scalar(attr_id, memtype_id, buf, dims, hdferr) 1 Warning: Unused dummy argument ‘dims’ at (1) [-Wunused-dummy-argument] H5Aff.F90:1720:77: SUBROUTINE H5Awrite_char_scalar_fix(attr_id, memtype_id, buf, buf_len, dims, hdferr) 1 Warning: Unused dummy argument ‘dims’ at (1) [-Wunused-dummy-argument] H5Pff.F90:43:6: USE H5fortkit 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5Off.F90:44:6: USE H5GLOBAL 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5Dff.F90:1194:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5Dff.F90:1226:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5Dff.F90:1288:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5Dff.F90:1306:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5Dff.F90:1339:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5Dff.F90:1434:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5Dff.F90:1464:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5Dff.F90:1522:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5Dff.F90:1587:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5Dff.F90:1641:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5Sff.F90:1819:21: start(1:n) = start(n:1:-1) 1 Warning: Creating array temporary at (1) [-Warray-temporaries] H5Dff.F90:1691:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5Sff.F90:1820:21: stride(1:n) = stride(n:1:-1) 1 Warning: Creating array temporary at (1) [-Warray-temporaries] H5Sff.F90:1821:21: count(1:n) = count(n:1:-1) 1 Warning: Creating array temporary at (1) [-Warray-temporaries] H5Sff.F90:1822:21: block(1:n) = block(n:1:-1) 1 Warning: Creating array temporary at (1) [-Warray-temporaries] H5Sff.F90:1228:12: stride, BLOCK) 1 Warning: Creating array temporary at (1) for argument ‘stride’ [-Warray-temporaries] H5Sff.F90:1228:20: stride, BLOCK) 1 Warning: Creating array temporary at (1) for argument ‘block’ [-Warray-temporaries] H5Sff.F90:1247:12: stride, def_block) 1 Warning: Creating array temporary at (1) for argument ‘stride’ [-Warray-temporaries] H5Dff.F90:1813:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5Sff.F90:1260:24: def_stride, BLOCK) 1 Warning: Creating array temporary at (1) for argument ‘block’ [-Warray-temporaries] H5Sff.F90:101:7: f_maxdims = maxdims 1 Warning: Code for reallocating the allocatable array at (1) will be added [-Wrealloc-lhs] H5Off.F90:1020:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5Sff.F90:103:7: f_maxdims = dims 1 Warning: Code for reallocating the allocatable array at (1) will be added [-Wrealloc-lhs] H5Off.F90:1082:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5Dff.F90:1432:64: SUBROUTINE h5dread_char_scalar(dset_id, mem_type_id, buf, dims, hdferr, & 1 Warning: Unused dummy argument ‘dims’ at (1) [-Wunused-dummy-argument] H5Dff.F90:1304:78: SUBROUTINE h5dwrite_char_scalar_fix(dset_id, mem_type_id, buf, buf_len, dims, hdferr, & 1 Warning: Unused dummy argument ‘dims’ at (1) [-Wunused-dummy-argument] H5Pff.F90:708:38: hdferr = h5pget_version_c(prp_id, boot, freelist, stab, shhdr) 1 Warning: Creating array temporary at (1) for argument ‘boot’ [-Warray-temporaries] H5Pff.F90:708:44: hdferr = h5pget_version_c(prp_id, boot, freelist, stab, shhdr) 1 Warning: Creating array temporary at (1) for argument ‘freelist’ [-Warray-temporaries] H5Pff.F90:708:54: hdferr = h5pget_version_c(prp_id, boot, freelist, stab, shhdr) 1 Warning: Creating array temporary at (1) for argument ‘stab’ [-Warray-temporaries] H5Pff.F90:708:60: hdferr = h5pget_version_c(prp_id, boot, freelist, stab, shhdr) 1 Warning: Creating array temporary at (1) for argument ‘shhdr’ [-Warray-temporaries] H5_ff.F90:42:6: USE H5GLOBAL 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_ff.F90:846:8: USE ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:30:19: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:31:6: USE H5GLOBAL 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:32:6: USE H5A 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:33:6: USE H5D 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:34:6: USE H5P 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:2954:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:2983:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:3012:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:3041:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:3070:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:3099:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:3128:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:3157:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:3186:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:3215:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:3244:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:3273:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:3302:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:3331:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:3360:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:3389:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:3418:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:3447:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:3476:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:3505:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:3534:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:3563:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:3592:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:3621:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:3650:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:3679:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:3708:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:3737:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:3766:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:3795:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:3824:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:3853:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:3882:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:3911:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:3940:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:3969:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:3998:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:4027:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:4056:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:4085:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:4114:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:4143:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:4172:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:4201:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:4230:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:4259:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:4288:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:4317:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:4346:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:4375:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:4404:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:4433:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:4462:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:4491:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:4520:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:4549:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:4578:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:4607:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:4636:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:4665:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:4694:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:4723:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:4752:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:4781:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:4810:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:4839:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:4868:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:4897:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:4926:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:4955:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:4984:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:5013:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:5042:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:5071:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:5100:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:5129:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:5158:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:5187:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:5216:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:5245:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:5274:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:5303:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:5332:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:5361:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:5390:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:5419:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:5448:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:5477:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:5506:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:5535:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:5564:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:5593:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:5622:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:5651:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:5680:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:5709:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:5738:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:5767:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:5796:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:5825:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:5854:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:5883:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:5912:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:5941:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:5970:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:5999:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:6028:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:6057:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:6086:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:6115:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:6144:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:6173:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:6202:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:6231:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:6260:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:6289:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:6318:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:6347:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:6376:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:6405:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:6434:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:6463:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:6492:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:6521:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:6550:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:6579:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:6608:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:6637:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:6666:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:6695:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:6724:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:6753:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:6782:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:6811:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:6840:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:6869:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:6898:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:6927:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:6956:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:6985:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:7014:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:7043:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:7072:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:7101:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:7130:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:7159:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:7188:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:7217:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:7246:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:7275:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:7304:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:7333:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:7362:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:7391:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:7420:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:7449:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:7478:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:7507:21: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_gen.F90:7099:69: SUBROUTINE h5dwrite_ikind_16_rank_0(dset_id, mem_type_id, buf, dims, hdferr, & 1 Warning: Unused dummy argument ‘dims’ at (1) [-Wunused-dummy-argument] H5_gen.F90:6867:68: SUBROUTINE h5dwrite_ikind_8_rank_0(dset_id, mem_type_id, buf, dims, hdferr, & 1 Warning: Unused dummy argument ‘dims’ at (1) [-Wunused-dummy-argument] H5_gen.F90:6635:68: SUBROUTINE h5dwrite_ikind_4_rank_0(dset_id, mem_type_id, buf, dims, hdferr, & 1 Warning: Unused dummy argument ‘dims’ at (1) [-Wunused-dummy-argument] H5_gen.F90:6403:68: SUBROUTINE h5dwrite_ikind_2_rank_0(dset_id, mem_type_id, buf, dims, hdferr, & 1 Warning: Unused dummy argument ‘dims’ at (1) [-Wunused-dummy-argument] H5_gen.F90:6171:68: SUBROUTINE h5dwrite_ikind_1_rank_0(dset_id, mem_type_id, buf, dims, hdferr, & 1 Warning: Unused dummy argument ‘dims’ at (1) [-Wunused-dummy-argument] H5_gen.F90:5939:69: SUBROUTINE h5dwrite_rkind_16_rank_0(dset_id, mem_type_id, buf, dims, hdferr, & 1 Warning: Unused dummy argument ‘dims’ at (1) [-Wunused-dummy-argument] H5_gen.F90:5707:69: SUBROUTINE h5dwrite_rkind_10_rank_0(dset_id, mem_type_id, buf, dims, hdferr, & 1 Warning: Unused dummy argument ‘dims’ at (1) [-Wunused-dummy-argument] H5_gen.F90:5475:68: SUBROUTINE h5dwrite_rkind_8_rank_0(dset_id, mem_type_id, buf, dims, hdferr, & 1 Warning: Unused dummy argument ‘dims’ at (1) [-Wunused-dummy-argument] H5_gen.F90:5243:68: SUBROUTINE h5dwrite_rkind_4_rank_0(dset_id, mem_type_id, buf, dims, hdferr, & 1 Warning: Unused dummy argument ‘dims’ at (1) [-Wunused-dummy-argument] H5_gen.F90:4808:68: SUBROUTINE h5dread_ikind_16_rank_0(dset_id, mem_type_id, buf, dims, hdferr, & 1 Warning: Unused dummy argument ‘dims’ at (1) [-Wunused-dummy-argument] H5_gen.F90:4576:67: SUBROUTINE h5dread_ikind_8_rank_0(dset_id, mem_type_id, buf, dims, hdferr, & 1 Warning: Unused dummy argument ‘dims’ at (1) [-Wunused-dummy-argument] H5_gen.F90:4344:67: SUBROUTINE h5dread_ikind_4_rank_0(dset_id, mem_type_id, buf, dims, hdferr, & 1 Warning: Unused dummy argument ‘dims’ at (1) [-Wunused-dummy-argument] H5_gen.F90:4112:67: SUBROUTINE h5dread_ikind_2_rank_0(dset_id, mem_type_id, buf, dims, hdferr, & 1 Warning: Unused dummy argument ‘dims’ at (1) [-Wunused-dummy-argument] H5_gen.F90:3880:67: SUBROUTINE h5dread_ikind_1_rank_0(dset_id, mem_type_id, buf, dims, hdferr, & 1 Warning: Unused dummy argument ‘dims’ at (1) [-Wunused-dummy-argument] H5_gen.F90:3648:68: SUBROUTINE h5dread_rkind_16_rank_0(dset_id, mem_type_id, buf, dims, hdferr, & 1 Warning: Unused dummy argument ‘dims’ at (1) [-Wunused-dummy-argument] H5_gen.F90:3416:68: SUBROUTINE h5dread_rkind_10_rank_0(dset_id, mem_type_id, buf, dims, hdferr, & 1 Warning: Unused dummy argument ‘dims’ at (1) [-Wunused-dummy-argument] H5_gen.F90:3184:67: SUBROUTINE h5dread_rkind_8_rank_0(dset_id, mem_type_id, buf, dims, hdferr, & 1 Warning: Unused dummy argument ‘dims’ at (1) [-Wunused-dummy-argument] H5_gen.F90:2952:67: SUBROUTINE h5dread_rkind_4_rank_0(dset_id, mem_type_id, buf, dims, hdferr, & 1 Warning: Unused dummy argument ‘dims’ at (1) [-Wunused-dummy-argument] H5_gen.F90:2742:67: SUBROUTINE h5aread_ikind_16_rank_0(attr_id, memtype_id, buf, dims, hdferr) 1 Warning: Unused dummy argument ‘dims’ at (1) [-Wunused-dummy-argument] H5_gen.F90:2630:66: SUBROUTINE h5aread_ikind_8_rank_0(attr_id, memtype_id, buf, dims, hdferr) 1 Warning: Unused dummy argument ‘dims’ at (1) [-Wunused-dummy-argument] H5_gen.F90:2518:66: SUBROUTINE h5aread_ikind_4_rank_0(attr_id, memtype_id, buf, dims, hdferr) 1 Warning: Unused dummy argument ‘dims’ at (1) [-Wunused-dummy-argument] H5_gen.F90:2406:66: SUBROUTINE h5aread_ikind_2_rank_0(attr_id, memtype_id, buf, dims, hdferr) 1 Warning: Unused dummy argument ‘dims’ at (1) [-Wunused-dummy-argument] H5_gen.F90:2294:66: SUBROUTINE h5aread_ikind_1_rank_0(attr_id, memtype_id, buf, dims, hdferr) 1 Warning: Unused dummy argument ‘dims’ at (1) [-Wunused-dummy-argument] H5_gen.F90:2182:67: SUBROUTINE h5aread_rkind_16_rank_0(attr_id, memtype_id, buf, dims, hdferr) 1 Warning: Unused dummy argument ‘dims’ at (1) [-Wunused-dummy-argument] H5_gen.F90:2070:67: SUBROUTINE h5aread_rkind_10_rank_0(attr_id, memtype_id, buf, dims, hdferr) 1 Warning: Unused dummy argument ‘dims’ at (1) [-Wunused-dummy-argument] H5_gen.F90:1958:66: SUBROUTINE h5aread_rkind_8_rank_0(attr_id, memtype_id, buf, dims, hdferr) 1 Warning: Unused dummy argument ‘dims’ at (1) [-Wunused-dummy-argument] H5_gen.F90:1846:66: SUBROUTINE h5aread_rkind_4_rank_0(attr_id, memtype_id, buf, dims, hdferr) 1 Warning: Unused dummy argument ‘dims’ at (1) [-Wunused-dummy-argument] H5_gen.F90:1636:68: SUBROUTINE h5awrite_ikind_16_rank_0(attr_id, memtype_id, buf, dims, hdferr) 1 Warning: Unused dummy argument ‘dims’ at (1) [-Wunused-dummy-argument] H5_gen.F90:1524:67: SUBROUTINE h5awrite_ikind_8_rank_0(attr_id, memtype_id, buf, dims, hdferr) 1 Warning: Unused dummy argument ‘dims’ at (1) [-Wunused-dummy-argument] H5_gen.F90:1412:67: SUBROUTINE h5awrite_ikind_4_rank_0(attr_id, memtype_id, buf, dims, hdferr) 1 Warning: Unused dummy argument ‘dims’ at (1) [-Wunused-dummy-argument] H5_gen.F90:1300:67: SUBROUTINE h5awrite_ikind_2_rank_0(attr_id, memtype_id, buf, dims, hdferr) 1 Warning: Unused dummy argument ‘dims’ at (1) [-Wunused-dummy-argument] H5_gen.F90:1188:67: SUBROUTINE h5awrite_ikind_1_rank_0(attr_id, memtype_id, buf, dims, hdferr) 1 Warning: Unused dummy argument ‘dims’ at (1) [-Wunused-dummy-argument] H5_gen.F90:1076:68: SUBROUTINE h5awrite_rkind_16_rank_0(attr_id, memtype_id, buf, dims, hdferr) 1 Warning: Unused dummy argument ‘dims’ at (1) [-Wunused-dummy-argument] H5_gen.F90:964:68: SUBROUTINE h5awrite_rkind_10_rank_0(attr_id, memtype_id, buf, dims, hdferr) 1 Warning: Unused dummy argument ‘dims’ at (1) [-Wunused-dummy-argument] H5_gen.F90:852:67: SUBROUTINE h5awrite_rkind_8_rank_0(attr_id, memtype_id, buf, dims, hdferr) 1 Warning: Unused dummy argument ‘dims’ at (1) [-Wunused-dummy-argument] H5_gen.F90:740:67: SUBROUTINE h5awrite_rkind_4_rank_0(attr_id, memtype_id, buf, dims, hdferr) 1 Warning: Unused dummy argument ‘dims’ at (1) [-Wunused-dummy-argument] HDF5.F90:28:6: USE H5GLOBAL 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] HDF5.F90:29:6: USE H5F 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] HDF5.F90:30:6: USE H5G 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] HDF5.F90:31:6: USE H5E 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] HDF5.F90:32:6: USE H5I 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] HDF5.F90:33:6: USE H5L 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] HDF5.F90:34:6: USE H5S 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] HDF5.F90:35:6: USE H5D 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] HDF5.F90:36:6: USE H5A 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] HDF5.F90:37:6: USE H5T 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] HDF5.F90:38:6: USE H5O 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] HDF5.F90:39:6: USE H5P 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] HDF5.F90:40:6: USE H5R 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] HDF5.F90:41:6: USE H5VL 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] HDF5.F90:42:6: USE H5Z 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] HDF5.F90:43:6: USE H5_gen 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] HDF5.F90:44:6: USE H5LIB 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5_test_buildiface.F90:50:19: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tf_gen.F90:29:19: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tf.F90:33:19: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tf.F90:138:8: USE H5GLOBAL 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tf.F90:152:13: USE H5GLOBAL 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tf.F90:198:8: USE H5GLOBAL 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tf.F90:208:13: USE H5GLOBAL 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5F.F90:38:12: USE HDF5 ! This module contains all necessary modules 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5F.F90:39:12: USE TH5_MISC 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5F.F90:399:12: USE HDF5 ! This module contains all necessary modules 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5F.F90:400:12: USE TH5_MISC 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5F.F90:592:13: USE HDF5 ! This module contains all necessary modules 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5F.F90:593:13: USE TH5_MISC 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5F.F90:692:12: USE HDF5 ! This module contains all necessary modules 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5F.F90:693:12: USE TH5_MISC 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5F.F90:821:12: USE HDF5 ! This module contains all necessary modules 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5F.F90:822:12: USE TH5_MISC 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5D.F90:37:6: USE HDF5 ! This module contains all necessary modules 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5D.F90:38:6: USE TH5_MISC 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5D.F90:39:6: USE TH5_MISC_GEN 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5D.F90:516:8: USE ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5D.F90:335:14: maxdims = (/H5S_UNLIMITED_F, H5S_UNLIMITED_F/) 1 Warning: Creating array temporary at (1) [-Warray-temporaries] tH5R.F90:34:6: USE HDF5 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5R.F90:35:6: USE TH5_MISC 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5R.F90:36:6: USE TH5_MISC_GEN 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5S.F90:36:6: USE HDF5 ! This module contains all necessary modules 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5S.F90:37:6: USE TH5_MISC 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5S.F90:38:6: USE TH5_MISC_GEN 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5T.F90:30:6: USE HDF5 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5T.F90:31:6: USE TH5_MISC 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5T.F90:32:6: USE TH5_MISC_GEN 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5T.F90:823:8: USE HDF5 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5T.F90:824:8: USE TH5_MISC 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5VL.F90:29:6: USE HDF5 ! This module contains all necessary modules 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5VL.F90:30:6: USE TH5_MISC 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5VL.F90:31:6: USE TH5_MISC_GEN 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5Z.F90:35:7: USE HDF5 ! This module contains all necessary modules 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5Z.F90:36:7: USE TH5_MISC 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5Z.F90:168:12: USE HDF5 ! This module contains all necessary modules 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5Z.F90:169:12: USE TH5_MISC 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5Sselect.F90:39:6: USE HDF5 ! This module contains all necessary modules 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5Sselect.F90:40:6: USE TH5_MISC 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5Sselect.F90:41:6: USE TH5_MISC_GEN 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5Sselect.F90:324:8: USE HDF5 ! This module contains all necessary modules 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5Sselect.F90:325:8: USE TH5_MISC 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5P.F90:28:6: USE HDF5 ! This module contains all necessary modules 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5P.F90:29:6: USE TH5_MISC 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5P.F90:30:6: USE TH5_MISC_GEN 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5A.F90:30:9: USE HDF5 ! This module contains all necessary modules 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5A.F90:31:9: USE TH5_MISC 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5A.F90:32:9: USE TH5_MISC_GEN 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5I.F90:29:6: USE HDF5 ! This module contains all necessary modules 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5I.F90:30:6: USE TH5_MISC 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5I.F90:31:6: USE TH5_MISC_GEN 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5G.F90:39:9: USE HDF5 ! This module contains all necessary modules 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5G.F90:40:9: USE TH5_MISC 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5E.F90:40:7: USE HDF5 ! This module contains all necessary modules 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5E.F90:41:7: USE TH5_MISC 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tHDF5.F90:29:6: USE TH5_MISC 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tHDF5.F90:30:6: USE TH5_MISC_GEN 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tHDF5.F90:31:6: USE TH5A 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tHDF5.F90:32:6: USE TH5D 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tHDF5.F90:33:6: USE TH5E 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tHDF5.F90:34:6: USE TH5F 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tHDF5.F90:35:6: USE TH5G 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tHDF5.F90:36:6: USE TH5I 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tHDF5.F90:37:6: USE TH5P 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tHDF5.F90:38:6: USE TH5R 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tHDF5.F90:39:6: USE TH5S 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tHDF5.F90:40:6: USE TH5SSELECT 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tHDF5.F90:41:6: USE TH5T 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tHDF5.F90:42:6: USE TH5VL 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tHDF5.F90:43:6: USE TH5Z 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] fortranlib_test.F90:29:6: USE HDF5 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] fortranlib_test.F90:30:6: USE THDF5 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] fflush1.F90:30:9: USE HDF5 ! This module contains all necessary modules 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] fflush1.F90:31:9: USE TH5_MISC 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] fflush2.F90:30:6: USE HDF5 ! This module contains all necessary modules 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] fflush2.F90:31:6: USE TH5_MISC 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5O.F90:29:6: USE HDF5 ! This module contains all necessary modules 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5O.F90:30:6: USE TH5_MISC 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5O.F90:31:6: USE TH5_MISC_GEN 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5A_1_8.F90:33:6: USE HDF5 ! This module contains all necessary modules 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5A_1_8.F90:34:6: USE TH5_MISC 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5A_1_8.F90:35:6: USE TH5_MISC_GEN 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5G_1_8.F90:32:6: USE HDF5 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5G_1_8.F90:33:6: USE TH5_MISC 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5G_1_8.F90:34:6: USE TH5_MISC_GEN 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5G_1_8.F90:1396:13: hard_link, use_index, total_error) 1 Warning: Unused dummy argument ‘hard_link’ at (1) [-Wunused-dummy-argument] tH5G_1_8.F90:1396:24: hard_link, use_index, total_error) 1 Warning: Unused dummy argument ‘use_index’ at (1) [-Wunused-dummy-argument] tH5MISC_1_8.F90:26:6: USE HDF5 ! This module contains all necessary modules 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5MISC_1_8.F90:27:6: USE TH5_MISC 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5MISC_1_8.F90:28:6: USE TH5_MISC_GEN 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tHDF5_1_8.F90:30:6: USE TH5_MISC 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tHDF5_1_8.F90:31:6: USE TH5MISC_1_8 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tHDF5_1_8.F90:32:6: USE TH5A_1_8 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tHDF5_1_8.F90:33:6: USE TH5G_1_8 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tHDF5_1_8.F90:34:6: USE TH5O 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] fortranlib_test_1_8.F90:27:6: USE HDF5 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] fortranlib_test_1_8.F90:28:6: USE THDF5_1_8 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] fortranlib_test_1_8.F90:29:6: USE TH5_MISC 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5E_F03.F90:37:6: USE HDF5 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5E_F03.F90:38:6: USE TH5_MISC 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5E_F03.F90:39:6: USE TH5_MISC_GEN 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5E_F03.F90:102:6: USE ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5E_F03.F90:103:6: USE test_my_hdf5_error_handler 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5E_F03.F90:72:69: INTEGER FUNCTION my_hdf5_error_handler_nodata(estack_id, data_inout) bind(C) 1 Warning: Unused dummy argument ‘data_inout’ at (1) [-Wunused-dummy-argument] tH5E_F03.F90:72:57: INTEGER FUNCTION my_hdf5_error_handler_nodata(estack_id, data_inout) bind(C) 1 Warning: Unused dummy argument ‘estack_id’ at (1) [-Wunused-dummy-argument] tH5E_F03.F90:49:52: INTEGER FUNCTION my_hdf5_error_handler(estack_id, data_inout) bind(C) 1 Warning: Unused dummy argument ‘estack_id’ at (1) [-Wunused-dummy-argument] tH5F_F03.F90:39:6: USE HDF5 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5F_F03.F90:40:6: USE TH5_MISC 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5F_F03.F90:41:6: USE TH5_MISC_GEN 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5F_F03.F90:42:6: USE ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5L_F03.F90:33:6: USE HDF5 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5L_F03.F90:34:6: USE TH5_MISC 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5L_F03.F90:35:6: USE TH5_MISC_GEN 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5L_F03.F90:36:19: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5L_F03.F90:124:6: USE liter_cb_mod 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5L_F03.F90:61:45: INTEGER(KIND=C_INT) FUNCTION liter_cb(group, name, link_info, op_data) bind(C) 1 Warning: Unused dummy argument ‘group’ at (1) [-Wunused-dummy-argument] tH5L_F03.F90:61:62: INTEGER(KIND=C_INT) FUNCTION liter_cb(group, name, link_info, op_data) bind(C) 1 Warning: Unused dummy argument ‘link_info’ at (1) [-Wunused-dummy-argument] tH5L_F03.F90:105:0: END FUNCTION liter_cb ^ Warning: ‘__result_liter_cb’ may be used uninitialized in this function [-Wmaybe-uninitialized] tH5L_F03.F90:61:0: INTEGER(KIND=C_INT) FUNCTION liter_cb(group, name, link_info, op_data) bind(C) ^ note: ‘__result_liter_cb’ was declared here tH5O_F03.F90:31:6: USE HDF5 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5O_F03.F90:32:19: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5O_F03.F90:286:6: USE HDF5 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5O_F03.F90:287:6: USE TH5_MISC 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5O_F03.F90:288:6: USE ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5O_F03.F90:425:6: USE HDF5 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5O_F03.F90:426:6: USE TH5_MISC 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5O_F03.F90:428:6: USE visit_cb 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5O_F03.F90:429:6: USE ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5O_F03.F90:563:6: USE HDF5 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5O_F03.F90:564:6: USE TH5_MISC 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5O_F03.F90:565:6: USE ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5O_F03.F90:717:6: USE HDF5 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5O_F03.F90:718:6: USE TH5_MISC 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5P_F03.F90:40:6: USE HDF5 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5P_F03.F90:41:6: USE ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5P_F03.F90:70:6: USE HDF5 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5P_F03.F90:71:6: USE TH5_MISC 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5P_F03.F90:72:6: USE TH5_MISC_GEN 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5P_F03.F90:73:6: USE ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5P_F03.F90:297:6: USE test_genprop_cls_cb1_mod 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5P_F03.F90:448:19: USE, INTRINSIC :: iso_c_binding 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5P_F03.F90:665:6: USE ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5P_F03.F90:741:16: vdsdims_max = (/VDSDIM0, VDSDIM1, VDSDIM2/) 1 Warning: Creating array temporary at (1) [-Warray-temporaries] tH5P_F03.F90:742:13: dims_max = (/INT(DIM0,hsize_t), INT(DIM1,hsize_t), INT(DIM2,hsize_t)/) 1 Warning: Creating array temporary at (1) [-Warray-temporaries] tH5P_F03.F90:799:15: count(1:3) = (/H5S_UNLIMITED_F,1_hsize_t,1_hsize_t/) 1 Warning: Creating array temporary at (1) [-Warray-temporaries] tH5P_F03.F90:800:19: src_count(1:3) = (/H5S_UNLIMITED_F,1_hsize_t,1_hsize_t/) 1 Warning: Creating array temporary at (1) [-Warray-temporaries] tH5P_F03.F90:862:18: block(1:3) = (/i, DIM1, DIM2/) 1 Warning: Creating array temporary at (1) [-Warray-temporaries] tH5T_F03.F90:46:6: USE HDF5 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5T_F03.F90:47:6: USE TH5_MISC 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5T_F03.F90:48:6: USE TH5_MISC_GEN 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5T_F03.F90:49:6: USE ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tH5T_F03.F90:3025:17: IF(.NOT.(orig_data(i,j).EQ.orig_data(i,j))) CYCLE ! skip IF value is NaN 1 Warning: Equality comparison for REAL(4) at (1) tH5T_F03.F90:2819:13: max_dims = (/H5S_UNLIMITED_F/) 1 Warning: Creating array temporary at (1) [-Warray-temporaries] tH5T_F03.F90:2270:34: CALL c_f_pointer(rdata(i)%p, ptr_r, [rdata(i)%len] ) 1 Warning: Creating array temporary at (1) [-Warray-temporaries] tH5T_F03.F90:1378:46: INTEGER, PARAMETER :: SOLID=0, LIQUID=1, GAS=2, PLASMA=3 1 Warning: Unused parameter ‘gas’ declared at (1) [-Wunused-parameter] tH5T_F03.F90:1378:39: INTEGER, PARAMETER :: SOLID=0, LIQUID=1, GAS=2, PLASMA=3 1 Warning: Unused parameter ‘liquid’ declared at (1) [-Wunused-parameter] tHDF5_F03.F90:30:6: USE TH5_MISC 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tHDF5_F03.F90:31:6: USE TH5E_F03 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tHDF5_F03.F90:32:6: USE TH5F_F03 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tHDF5_F03.F90:33:6: USE TH5L_F03 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tHDF5_F03.F90:34:6: USE TH5O_F03 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tHDF5_F03.F90:35:6: USE TH5P_F03 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tHDF5_F03.F90:36:6: USE TH5T_F03 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] fortranlib_test_F03.F90:28:6: USE HDF5 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] fortranlib_test_F03.F90:29:6: USE THDF5_F03 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] vol_connector.F90:30:6: USE HDF5 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] vol_connector.F90:31:6: USE TH5_MISC 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] vol_connector.F90:32:6: USE TH5_MISC_GEN 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] vol_connector.F90:231:6: USE HDF5 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] vol_connector.F90:232:6: USE VOL_TMOD 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] hyper.f90:20:6: USE HDF5 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] ptest.f90:19:6: USE HDF5 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] mdset.f90:20:6: USE HDF5 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] hyper.f90:21:6: USE MPI 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] ptest.f90:20:6: USE MPI 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] mdset.f90:21:6: USE MPI 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] hyper.f90:22:6: USE TH5_MISC 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] ptest.f90:21:6: USE TH5_MISC 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] mdset.f90:22:6: USE TH5_MISC 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] ptest.f90:65:94: CALL hyper(length, do_collective(j), do_chunk(i), mpi_size, mpi_rank, ret_total_error) 1 Warning: Procedure ‘hyper’ called with an implicit interface at (1) [-Wimplicit-interface] ptest.f90:76:102: CALL multiple_dset_write(length, do_collective(1), do_chunk(1), mpi_size, mpi_rank, ret_total_error) 1 Warning: Procedure ‘multiple_dset_write’ called with an implicit interface at (1) [-Wimplicit-interface] hyper.f90:32:21: INTEGER :: mpierror ! MPI hdferror flag 1 Warning: Unused variable ‘mpierror’ declared at (1) [-Wunused-variable] mdset.f90:32:21: INTEGER :: mpierror ! MPI hdferror flag 1 Warning: Unused variable ‘mpierror’ declared at (1) [-Wunused-variable] hl/src/H5LTanalyze.l:29:9: warning: unknown option after ‘#pragma GCC diagnostic’ kind [-Wpragmas] H5LT.c: In function ‘H5LTfind_dataset’: H5LT.c:1414:77: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] return H5Literate2(loc_id, H5_INDEX_NAME, H5_ITER_INC, 0, find_dataset, (void *)dset_name); ^ H5LT.c: In function ‘H5LT_find_attribute’: H5LT.c:2040:77: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual] return H5Aiterate2(loc_id, H5_INDEX_NAME, H5_ITER_INC, NULL, find_attr, (void *)attr_name); ^ H5DS.c: In function ‘H5DSset_label’: H5DS.c:1637:8: warning: ‘u.const_buf’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (u.buf) ^ decompress.c:60:5: warning: size of ‘Prefix’ is 16384 bytes [-Wlarger-than=] int Prefix[4096]; ^ decompress.c:61:5: warning: size of ‘Suffix’ is 16384 bytes [-Wlarger-than=] int Suffix[4096]; ^ decompress.c:65:5: warning: size of ‘OutCode’ is 4100 bytes [-Wlarger-than=] int OutCode[1025]; ^ hdfgifwr.c:126:24: warning: size of ‘htab’ is 40024 bytes [-Wlarger-than=] static count_int htab [HSIZE]; ^ hdfgifwr.c:127:24: warning: size of ‘codetab’ is 10006 bytes [-Wlarger-than=] static unsigned short codetab [HSIZE]; ^ hdfgifwr.c: In function ‘hdfWriteGIF’: hdfgifwr.c:400:5: warning: cannot optimize loop, the loop counter may overflow [-Wunsafe-loop-optimizations] } while ((i -= 16) >= 0); ^ H5HL_buildiface.F90:50:19: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5IMff.F90:32:19: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5IMff.F90:33:6: USE h5fortran_types 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5IMff.F90:34:6: USE hdf5 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5TBff.F90:35:19: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5TBff.F90:36:6: USE h5fortran_types 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5DSff.F90:21:6: USE h5fortran_types 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5DSff.F90:22:6: USE hdf5 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5TBff.F90:37:6: USE hdf5 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5LTff.F90:34:19: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5LTff.F90:35:6: USE h5fortran_types 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5LTff.F90:36:6: USE hdf5 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5TBff.F90:286:8: USE ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5TBff.F90:369:8: USE ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5LTff.F90:402:11: dims,& 1 Warning: Unused dummy argument ‘dims’ at (1) [-Wunused-dummy-argument] H5TBfc.c: In function ‘h5tbmake_table_c’: H5TBfc.c:100:33: warning: to be safe all intermediate pointers in cast from ‘char **’ to ‘const char **’ must be ‘const’ qualified [-Wcast-qual] (size_t)*type_size, (const char **)c_field_names, c_field_offset, c_field_types, ^ H5TBfc.c: In function ‘h5tbmake_table_ptr_c’: H5TBfc.c:206:33: warning: to be safe all intermediate pointers in cast from ‘char **’ to ‘const char **’ must be ‘const’ qualified [-Wcast-qual] (size_t)*type_size, (const char **)c_field_names, c_field_offset, c_field_types, ^ H5TBff_gen.F90:30:19: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5TBff_gen.F90:31:6: USE h5fortran_types 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5TBff_gen.F90:32:6: USE H5TB_CONST 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5LTff_gen.F90:30:19: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5LTff_gen.F90:31:6: USE h5fortran_types 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5LTff_gen.F90:32:6: USE H5LT_CONST 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] H5LTff_gen.F90:6374:75: SUBROUTINE h5ltread_dataset_int_kind_16_rank_0(loc_id,dset_name, buf,dims,errcode) 1 Warning: Unused dummy argument ‘dims’ at (1) [-Wunused-dummy-argument] H5LTff_gen.F90:6230:74: SUBROUTINE h5ltread_dataset_int_kind_8_rank_0(loc_id,dset_name, buf,dims,errcode) 1 Warning: Unused dummy argument ‘dims’ at (1) [-Wunused-dummy-argument] H5LTff_gen.F90:6086:74: SUBROUTINE h5ltread_dataset_int_kind_4_rank_0(loc_id,dset_name, buf,dims,errcode) 1 Warning: Unused dummy argument ‘dims’ at (1) [-Wunused-dummy-argument] H5LTff_gen.F90:5942:74: SUBROUTINE h5ltread_dataset_int_kind_2_rank_0(loc_id,dset_name, buf,dims,errcode) 1 Warning: Unused dummy argument ‘dims’ at (1) [-Wunused-dummy-argument] H5LTff_gen.F90:5798:74: SUBROUTINE h5ltread_dataset_int_kind_1_rank_0(loc_id,dset_name, buf,dims,errcode) 1 Warning: Unused dummy argument ‘dims’ at (1) [-Wunused-dummy-argument] H5LTff_gen.F90:5662:88: SUBROUTINE h5ltread_dataset_integer_kind_16_rank_0(loc_id,dset_name, type_id, buf,dims,errcode) 1 Warning: Unused dummy argument ‘dims’ at (1) [-Wunused-dummy-argument] H5LTff_gen.F90:5526:87: SUBROUTINE h5ltread_dataset_integer_kind_8_rank_0(loc_id,dset_name, type_id, buf,dims,errcode) 1 Warning: Unused dummy argument ‘dims’ at (1) [-Wunused-dummy-argument] H5LTff_gen.F90:5390:87: SUBROUTINE h5ltread_dataset_integer_kind_4_rank_0(loc_id,dset_name, type_id, buf,dims,errcode) 1 Warning: Unused dummy argument ‘dims’ at (1) [-Wunused-dummy-argument] H5LTff_gen.F90:5254:87: SUBROUTINE h5ltread_dataset_integer_kind_2_rank_0(loc_id,dset_name, type_id, buf,dims,errcode) 1 Warning: Unused dummy argument ‘dims’ at (1) [-Wunused-dummy-argument] H5LTff_gen.F90:5118:87: SUBROUTINE h5ltread_dataset_integer_kind_1_rank_0(loc_id,dset_name, type_id, buf,dims,errcode) 1 Warning: Unused dummy argument ‘dims’ at (1) [-Wunused-dummy-argument] H5LTff_gen.F90:3510:77: SUBROUTINE h5ltread_dataset_double_kind_16_rank_0(loc_id,dset_name,buf,dims,errcode) 1 Warning: Unused dummy argument ‘dims’ at (1) [-Wunused-dummy-argument] H5LTff_gen.F90:3382:77: SUBROUTINE h5ltread_dataset_double_kind_10_rank_0(loc_id,dset_name,buf,dims,errcode) 1 Warning: Unused dummy argument ‘dims’ at (1) [-Wunused-dummy-argument] H5LTff_gen.F90:3254:76: SUBROUTINE h5ltread_dataset_double_kind_8_rank_0(loc_id,dset_name,buf,dims,errcode) 1 Warning: Unused dummy argument ‘dims’ at (1) [-Wunused-dummy-argument] H5LTff_gen.F90:3126:76: SUBROUTINE h5ltread_dataset_double_kind_4_rank_0(loc_id,dset_name,buf,dims,errcode) 1 Warning: Unused dummy argument ‘dims’ at (1) [-Wunused-dummy-argument] H5LTff_gen.F90:2454:76: SUBROUTINE h5ltread_dataset_float_kind_16_rank_0(loc_id,dset_name,buf,dims,errcode) 1 Warning: Unused dummy argument ‘dims’ at (1) [-Wunused-dummy-argument] H5LTff_gen.F90:2326:76: SUBROUTINE h5ltread_dataset_float_kind_10_rank_0(loc_id,dset_name,buf,dims,errcode) 1 Warning: Unused dummy argument ‘dims’ at (1) [-Wunused-dummy-argument] H5LTff_gen.F90:2198:75: SUBROUTINE h5ltread_dataset_float_kind_8_rank_0(loc_id,dset_name,buf,dims,errcode) 1 Warning: Unused dummy argument ‘dims’ at (1) [-Wunused-dummy-argument] H5LTff_gen.F90:2070:75: SUBROUTINE h5ltread_dataset_float_kind_4_rank_0(loc_id,dset_name,buf,dims,errcode) 1 Warning: Unused dummy argument ‘dims’ at (1) [-Wunused-dummy-argument] H5LTff_gen.F90:1390:83: SUBROUTINE h5ltread_dataset_real_kind_16_rank_0(loc_id,dset_name,type_id,buf,dims,errcode) 1 Warning: Unused dummy argument ‘dims’ at (1) [-Wunused-dummy-argument] H5LTff_gen.F90:1254:83: SUBROUTINE h5ltread_dataset_real_kind_10_rank_0(loc_id,dset_name,type_id,buf,dims,errcode) 1 Warning: Unused dummy argument ‘dims’ at (1) [-Wunused-dummy-argument] H5LTff_gen.F90:1118:82: SUBROUTINE h5ltread_dataset_real_kind_8_rank_0(loc_id,dset_name,type_id,buf,dims,errcode) 1 Warning: Unused dummy argument ‘dims’ at (1) [-Wunused-dummy-argument] H5LTff_gen.F90:982:82: SUBROUTINE h5ltread_dataset_real_kind_4_rank_0(loc_id,dset_name,type_id,buf,dims,errcode) 1 Warning: Unused dummy argument ‘dims’ at (1) [-Wunused-dummy-argument] tstds.F90:62:6: USE HDF5 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tstlite.F90:21:6: USE TH5_MISC_GEN 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tstimage.F90:53:4: use h5im ! module of H5IM 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tsttable.F90:45:6: USE TH5_MISC_GEN 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tstlite.F90:50:19: USE, INTRINSIC :: ISO_C_BINDING 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tstlite.F90:51:6: USE H5LT ! module of H5LT 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tsttable.F90:56:6: USE H5TB ! module of H5TB 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tstds.F90:63:6: USE H5LT 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tstimage.F90:54:4: use hdf5 ! module of HDF5 library 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tsttable.F90:57:6: USE HDF5 ! module of HDF5 library 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tstlite.F90:52:6: USE HDF5 ! module of HDF5 library 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tstimage.F90:55:4: USE TSTIMAGE ! module for testing image support routines 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tsttable.F90:58:6: USE TSTTABLE ! module for testing table support routines 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tsttable.F90:550:6: USE H5TB ! module of H5TB 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tstimage.F90:349:4: USE TSTIMAGE_TESTS ! module for testing dataset routines 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tstds.F90:64:6: USE H5DS 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tstlite.F90:53:6: USE TSTLITE ! module for testing lite support routines 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tsttable.F90:551:6: USE HDF5 ! module of HDF5 library 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tstds.F90:65:6: USE TSTDS ! module for testing dataset support routines 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tsttable.F90:552:6: USE TSTTABLE ! module for testing table support routines 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tstds.F90:354:6: USE TSTDS_TESTS ! module for testing dataset routines 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tsttable.F90:645:18: H5OFFSETOF(C_LOC(dst_buf(1)), C_LOC(dst_buf(1)%name(1:1))), & 1 Warning: Removing call to function ‘c_loc’ at (1) tsttable.F90:647:18: H5OFFSETOF(C_LOC(dst_buf(1)), C_LOC(dst_buf(1)%long)), & 1 Warning: Removing call to function ‘c_loc’ at (1) tsttable.F90:657:19: string_type,& 1 Warning: Removing call to function ‘h5kind_to_type’ at (1) tsttable.F90:734:6: USE H5TB ! module of H5TB 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tstlite.F90:1994:6: USE TSTLITE_TESTS ! module for testing lite routines 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tsttable.F90:735:6: USE HDF5 ! module of HDF5 library 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tsttable.F90:736:6: USE TSTTABLE_TESTS ! module for testing table routines 1 Warning: USE statement at (1) has no ONLY qualifier [-Wuse-without-only] tsttable.F90:610:23: p_data(1:nrecords) = (/ & 1 Warning: Creating array temporary at (1) [-Warray-temporaries] tsttable.F90:644:26: dst_offset(1:nfields) = (/ & 1 Warning: Creating array temporary at (1) [-Warray-temporaries] tsttable.F90:656:20: field_type(1:5) = (/ & 1 Warning: Creating array temporary at (1) [-Warray-temporaries] tstlite.F90:1549:36: CALL c_f_pointer(rdata(i)%p, ptr_r, [rdata(i)%len] ) 1 Warning: Creating array temporary at (1) [-Warray-temporaries] Making install in src make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/src' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/src' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib' /bin/bash ../libtool --mode=install /usr/bin/install -c libhdf5.la '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib' libtool: install: /usr/bin/install -c .libs/libhdf5.so.200.0.0 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5.so.200.0.0 libtool: install: (cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib && { ln -s -f libhdf5.so.200.0.0 libhdf5.so.200 || { rm -f libhdf5.so.200 && ln -s libhdf5.so.200.0.0 libhdf5.so.200; }; }) libtool: install: (cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib && { ln -s -f libhdf5.so.200.0.0 libhdf5.so || { rm -f libhdf5.so && ln -s libhdf5.so.200.0.0 libhdf5.so; }; }) libtool: install: /usr/bin/install -c .libs/libhdf5.lai /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5.la libtool: install: /usr/bin/install -c .libs/libhdf5.a /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5.a libtool: install: chmod 644 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5.a libtool: install: ranlib /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5.a libtool: finish: PATH="/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin:/home/dsu/Soft/PETSc/petsc-3.10.5/linux-gnu-opt/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/home/dsu/Soft/Paraview/ParaView-5.5.0/bin:/home/dsu/Soft/VisIt/visit2_13_0.linux-x86_64/bin:/home/dsu/Soft/Intel/parallel_studio_2019/bin:/home/dsu/Soft/Paraview/ParaView-5.5.0/bin:/home/dsu/Soft/VisIt/visit2_13_0.linux-x86_64/bin:/home/dsu/Soft/Intel/parallel_studio_2019/bin:/sbin" ldconfig -n /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the '-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the 'LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the 'LD_RUN_PATH' environment variable during linking - use the '-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to '/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include' /usr/bin/install -c -m 644 hdf5.h H5api_adpt.h H5overflow.h H5pubconf.h H5public.h H5version.h H5Apublic.h H5ACpublic.h H5Cpublic.h H5Dpublic.h H5Epubgen.h H5Epublic.h H5ESpublic.h H5Fpublic.h H5FDpublic.h H5FDcore.h H5FDdirect.h H5FDfamily.h H5FDhdfs.h H5FDlog.h H5FDmpi.h H5FDmpio.h H5FDmulti.h H5FDros3.h H5FDsec2.h H5FDstdio.h H5FDwindows.h H5Gpublic.h H5Ipublic.h H5Lpublic.h H5Mpublic.h H5MMpublic.h H5Opublic.h H5Ppublic.h H5PLextern.h H5PLpublic.h H5Rpublic.h H5Spublic.h H5Tpublic.h H5VLconnector.h '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include' /usr/bin/install -c -m 644 H5VLconnector_passthru.h H5VLnative.h H5VLpassthru.h H5VLpublic.h H5Zpublic.h '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib' /usr/bin/install -c -m 644 libhdf5.settings '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/src' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/src' Making install in test make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/test' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/test' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/test' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/test' Making install in testpar make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/testpar' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/testpar' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/testpar' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/testpar' Making install in bin make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/bin' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/bin' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' /usr/bin/install -c h5redeploy '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/bin' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/bin' Making install in tools make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools' Making install in lib make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/lib' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/lib' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/lib' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/lib' Making install in src make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src' Making install in h5diff make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5diff' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5diff' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' /bin/bash ../../../libtool --mode=install /usr/bin/install -c h5diff ph5diff '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' libtool: install: /usr/bin/install -c .libs/h5diff /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/h5diff libtool: install: /usr/bin/install -c .libs/ph5diff /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/ph5diff make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5diff' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5diff' Making install in h5ls make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5ls' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5ls' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' /bin/bash ../../../libtool --mode=install /usr/bin/install -c h5ls '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' libtool: install: /usr/bin/install -c .libs/h5ls /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/h5ls make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5ls' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5ls' Making install in h5dump make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5dump' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5dump' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' /bin/bash ../../../libtool --mode=install /usr/bin/install -c h5dump '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' libtool: install: /usr/bin/install -c .libs/h5dump /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/h5dump make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5dump' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5dump' Making install in misc make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/misc' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/misc' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' /bin/bash ../../../libtool --mode=install /usr/bin/install -c h5debug h5repart h5mkgrp h5clear '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' libtool: install: /usr/bin/install -c .libs/h5debug /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/h5debug libtool: install: /usr/bin/install -c .libs/h5repart /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/h5repart libtool: install: /usr/bin/install -c .libs/h5mkgrp /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/h5mkgrp libtool: install: /usr/bin/install -c .libs/h5clear /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/h5clear make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/misc' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/misc' Making install in h5import make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5import' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5import' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' /bin/bash ../../../libtool --mode=install /usr/bin/install -c h5import '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' libtool: install: /usr/bin/install -c .libs/h5import /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/h5import make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5import' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5import' Making install in h5repack make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5repack' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5repack' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' /bin/bash ../../../libtool --mode=install /usr/bin/install -c h5repack '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' libtool: install: /usr/bin/install -c .libs/h5repack /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/h5repack make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5repack' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5repack' Making install in h5jam make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5jam' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5jam' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' /bin/bash ../../../libtool --mode=install /usr/bin/install -c h5jam h5unjam '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' libtool: install: /usr/bin/install -c .libs/h5jam /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/h5jam libtool: install: /usr/bin/install -c .libs/h5unjam /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/h5unjam make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5jam' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5jam' Making install in h5copy make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5copy' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5copy' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' /bin/bash ../../../libtool --mode=install /usr/bin/install -c h5copy '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' libtool: install: /usr/bin/install -c .libs/h5copy /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/h5copy make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5copy' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5copy' Making install in h5format_convert make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5format_convert' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5format_convert' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' /bin/bash ../../../libtool --mode=install /usr/bin/install -c h5format_convert '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' libtool: install: /usr/bin/install -c .libs/h5format_convert /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/h5format_convert make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5format_convert' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5format_convert' Making install in h5stat make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5stat' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5stat' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' /bin/bash ../../../libtool --mode=install /usr/bin/install -c h5stat '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' libtool: install: /usr/bin/install -c .libs/h5stat /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/h5stat make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5stat' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src/h5stat' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/src' Making install in test make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test' Making install in h5diff make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5diff' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5diff' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5diff' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5diff' Making install in h5ls make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5ls' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5ls' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5ls' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5ls' Making install in h5dump make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5dump' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5dump' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5dump' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5dump' Making install in misc make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/misc' Making install in vds make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/misc/vds' make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/misc/vds' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/misc/vds' make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/misc/vds' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/misc' make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/misc' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/misc' make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/misc' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/misc' Making install in h5import make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5import' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5import' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5import' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5import' Making install in h5repack make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5repack' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5repack' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5repack' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5repack' Making install in h5jam make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5jam' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5jam' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5jam' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5jam' Making install in h5copy make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5copy' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5copy' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5copy' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5copy' Making install in h5format_convert make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5format_convert' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5format_convert' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5format_convert' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5format_convert' Making install in h5stat make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5stat' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5stat' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5stat' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/h5stat' Making install in perform make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/perform' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/perform' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' /bin/bash ../../../libtool --mode=install /usr/bin/install -c h5perf_serial h5perf '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' libtool: install: /usr/bin/install -c .libs/h5perf_serial /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/h5perf_serial libtool: install: /usr/bin/install -c .libs/h5perf /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/h5perf make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/perform' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test/perform' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools/test' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/tools' Making install in . make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0' Making install in fortran make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran' Making install in src make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran/src' /usr/bin/make install-am make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran/src' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran/src' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib' /bin/bash ../../libtool --mode=install /usr/bin/install -c libhdf5_fortran.la '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib' libtool: install: (cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran/src; /bin/bash "/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/libtool" --silent --tag FC --mode=relink /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../src -I../../fortran/src -ffree-line-length-0 -O3 -version-info 200:0:0 -o libhdf5_fortran.la -rpath /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib H5f90global.lo H5fortran_types.lo H5_ff.lo H5Aff.lo H5Dff.lo H5Eff.lo H5Fff.lo H5Gff.lo H5Iff.lo H5Lff.lo H5Off.lo H5Pff.lo H5Rff.lo H5Sff.lo H5Tff.lo H5VLff.lo H5Zff.lo H5_gen.lo H5fortkit.lo H5f90kit.lo H5_f.lo H5Af.lo H5Df.lo H5Ef.lo H5Ff.lo H5Gf.lo H5If.lo H5Lf.lo H5Of.lo H5Pf.lo H5Rf.lo H5Sf.lo H5Tf.lo H5Zf.lo HDF5.lo ../../src/libhdf5.la -lz -ldl -lm -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lz -lm ) libtool: install: /usr/bin/install -c .libs/libhdf5_fortran.so.200.0.0T /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5_fortran.so.200.0.0 libtool: install: (cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib && { ln -s -f libhdf5_fortran.so.200.0.0 libhdf5_fortran.so.200 || { rm -f libhdf5_fortran.so.200 && ln -s libhdf5_fortran.so.200.0.0 libhdf5_fortran.so.200; }; }) libtool: install: (cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib && { ln -s -f libhdf5_fortran.so.200.0.0 libhdf5_fortran.so || { rm -f libhdf5_fortran.so && ln -s libhdf5_fortran.so.200.0.0 libhdf5_fortran.so; }; }) libtool: install: /usr/bin/install -c .libs/libhdf5_fortran.lai /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5_fortran.la libtool: install: /usr/bin/install -c .libs/libhdf5_fortran.a /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5_fortran.a libtool: install: chmod 644 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5_fortran.a libtool: install: ranlib /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5_fortran.a libtool: finish: PATH="/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin:/home/dsu/Soft/PETSc/petsc-3.10.5/linux-gnu-opt/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/home/dsu/Soft/Paraview/ParaView-5.5.0/bin:/home/dsu/Soft/VisIt/visit2_13_0.linux-x86_64/bin:/home/dsu/Soft/Intel/parallel_studio_2019/bin:/home/dsu/Soft/Paraview/ParaView-5.5.0/bin:/home/dsu/Soft/VisIt/visit2_13_0.linux-x86_64/bin:/home/dsu/Soft/Intel/parallel_studio_2019/bin:/sbin" ldconfig -n /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the '-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the 'LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the 'LD_RUN_PATH' environment variable during linking - use the '-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to '/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- cp ../../fortran/src/H5f90i_gen.h /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include/. cp ../../fortran/src/H5f90i.h /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include/. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran/src' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran/src' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran/src' Making install in test make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran/test' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran/test' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran/test' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran/test' Making install in testpar make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran/testpar' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran/testpar' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran/testpar' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran/testpar' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran' Making install in hl make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl' Making install in src make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/src' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/src' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib' /bin/bash ../../libtool --mode=install /usr/bin/install -c libhdf5_hl.la '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib' libtool: install: (cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/src; /bin/bash "/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/libtool" --silent --tag CC --mode=relink /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -std=c99 -Wall -Wcast-qual -Wconversion -Wextra -Wfloat-equal -Wformat=2 -Winit-self -Winvalid-pch -Wmissing-include-dirs -Wno-c++-compat -Wno-format-nonliteral -Wshadow -Wundef -Wwrite-strings -pedantic -Wbad-function-cast -Wcast-align -Wdeclaration-after-statement -Wdisabled-optimization -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wold-style-definition -Wpacked -Wredundant-decls -Wstrict-prototypes -Wswitch-enum -Wswitch-default -Wunused-macros -Wunsafe-loop-optimizations -Wlogical-op -Wlarger-than=2560 -Wsync-nand -Wframe-larger-than=16384 -Wpacked-bitfield-compat -Wstrict-overflow=5 -Wjump-misses-init -Wunsuffixed-float-constants -Wdouble-promotion -Wtrampolines -Wstack-usage=8192 -Wvector-operation-performance -Wdate-time -Warray-bounds=2 -Wc99-c11-compat -ftrapv -fno-common -g -fno-omit-frame-pointer -Wno-aggregate-return -Wno-inline -Wno-missing-format-attribute -Wno-missing-noreturn -Wno-suggest-attribute=const -Wno-suggest-attribute=pure -Wno-suggest-attribute=noreturn -Wno-suggest-attribute=format -Og -fstack-protector -O3 -version-info 200:0:0 -o libhdf5_hl.la -rpath /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib H5DO.lo H5DS.lo H5IM.lo H5LT.lo H5LTanalyze.lo H5LTparse.lo H5PT.lo H5TB.lo H5LD.lo ../../src/libhdf5.la -lz -ldl -lm -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lz -lm ) libtool: install: /usr/bin/install -c .libs/libhdf5_hl.so.200.0.0T /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5_hl.so.200.0.0 libtool: install: (cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib && { ln -s -f libhdf5_hl.so.200.0.0 libhdf5_hl.so.200 || { rm -f libhdf5_hl.so.200 && ln -s libhdf5_hl.so.200.0.0 libhdf5_hl.so.200; }; }) libtool: install: (cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib && { ln -s -f libhdf5_hl.so.200.0.0 libhdf5_hl.so || { rm -f libhdf5_hl.so && ln -s libhdf5_hl.so.200.0.0 libhdf5_hl.so; }; }) libtool: install: /usr/bin/install -c .libs/libhdf5_hl.lai /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5_hl.la libtool: install: /usr/bin/install -c .libs/libhdf5_hl.a /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5_hl.a libtool: install: chmod 644 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5_hl.a libtool: install: ranlib /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5_hl.a libtool: finish: PATH="/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin:/home/dsu/Soft/PETSc/petsc-3.10.5/linux-gnu-opt/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/home/dsu/Soft/Paraview/ParaView-5.5.0/bin:/home/dsu/Soft/VisIt/visit2_13_0.linux-x86_64/bin:/home/dsu/Soft/Intel/parallel_studio_2019/bin:/home/dsu/Soft/Paraview/ParaView-5.5.0/bin:/home/dsu/Soft/VisIt/visit2_13_0.linux-x86_64/bin:/home/dsu/Soft/Intel/parallel_studio_2019/bin:/sbin" ldconfig -n /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the '-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the 'LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the 'LD_RUN_PATH' environment variable during linking - use the '-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to '/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include' /usr/bin/install -c -m 644 hdf5_hl.h H5DOpublic.h H5IMpublic.h H5LTpublic.h H5TBpublic.h H5DSpublic.h H5PTpublic.h H5LDpublic.h '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/src' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/src' Making install in test make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/test' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/test' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/test' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/test' Making install in tools make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/tools' Making install in gif2h5 make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/tools/gif2h5' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/tools/gif2h5' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' /bin/bash ../../../libtool --mode=install /usr/bin/install -c gif2h5 h52gif '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' libtool: install: /usr/bin/install -c .libs/gif2h5 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/gif2h5 libtool: install: /usr/bin/install -c .libs/h52gif /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/h52gif make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/tools/gif2h5' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/tools/gif2h5' Making install in h5watch make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/tools/h5watch' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/tools/h5watch' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' /bin/bash ../../../libtool --mode=install /usr/bin/install -c h5watch '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' libtool: install: /usr/bin/install -c .libs/h5watch /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/h5watch make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/tools/h5watch' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/tools/h5watch' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/tools' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/tools' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/tools' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/tools' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/tools' Making install in fortran make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran' Making install in src make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran/src' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran/src' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib' /bin/bash ../../../libtool --mode=install /usr/bin/install -c libhdf5hl_fortran.la '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib' libtool: install: (cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran/src; /bin/bash "/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/libtool" --silent --tag FC --mode=relink /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -std=f2008ts -pedantic -Wall -Wextra -Wunderflow -Wimplicit-interface -Wsurprising -Waliasing -Wcharacter-truncation -Warray-temporaries -Wintrinsics-std -Wimplicit-procedure -Wreal-q-constant -Wfunction-elimination -Wrealloc-lhs -Wrealloc-lhs-all -Wno-c-binding-type -Wuse-without-only -fcheck=all -g -Og -I../../../fortran/src -I../../../fortran/src -ffree-line-length-0 -O3 -version-info 200:0:0 -o libhdf5hl_fortran.la -rpath /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib H5DSfc.lo H5LTfc.lo H5IMfc.lo H5IMcc.lo H5TBfc.lo H5DSff.lo H5LTff.lo H5TBff.lo H5IMff.lo H5LTff_gen.lo H5TBff_gen.lo ../../../hl/src/libhdf5_hl.la ../../../fortran/src/libhdf5_fortran.la -lz -ldl -lm -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lz -lm ) libtool: install: /usr/bin/install -c .libs/libhdf5hl_fortran.so.200.0.0T /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5hl_fortran.so.200.0.0 libtool: install: (cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib && { ln -s -f libhdf5hl_fortran.so.200.0.0 libhdf5hl_fortran.so.200 || { rm -f libhdf5hl_fortran.so.200 && ln -s libhdf5hl_fortran.so.200.0.0 libhdf5hl_fortran.so.200; }; }) libtool: install: (cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib && { ln -s -f libhdf5hl_fortran.so.200.0.0 libhdf5hl_fortran.so || { rm -f libhdf5hl_fortran.so && ln -s libhdf5hl_fortran.so.200.0.0 libhdf5hl_fortran.so; }; }) libtool: install: /usr/bin/install -c .libs/libhdf5hl_fortran.lai /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5hl_fortran.la libtool: install: /usr/bin/install -c .libs/libhdf5hl_fortran.a /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5hl_fortran.a libtool: install: chmod 644 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5hl_fortran.a libtool: install: ranlib /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5hl_fortran.a libtool: finish: PATH="/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin:/home/dsu/Soft/PETSc/petsc-3.10.5/linux-gnu-opt/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/home/dsu/Soft/Paraview/ParaView-5.5.0/bin:/home/dsu/Soft/VisIt/visit2_13_0.linux-x86_64/bin:/home/dsu/Soft/Intel/parallel_studio_2019/bin:/home/dsu/Soft/Paraview/ParaView-5.5.0/bin:/home/dsu/Soft/VisIt/visit2_13_0.linux-x86_64/bin:/home/dsu/Soft/Intel/parallel_studio_2019/bin:/sbin" ldconfig -n /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the '-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the 'LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the 'LD_RUN_PATH' environment variable during linking - use the '-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to '/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- /usr/bin/make install-exec-hook make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran/src' cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib && \ if test -f libhdf5hl_fortran.a -a \ ! -f libhdf5_hl_fortran.a; then \ ln -s libhdf5hl_fortran.a libhdf5_hl_fortran.a; \ fi; \ if test -f libhdf5hl_fortran.so -a \ ! -f libhdf5_hl_fortran.so; then \ ln -s libhdf5hl_fortran.so libhdf5_hl_fortran.so; \ fi; make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran/src' make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran/src' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran/src' Making install in test make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran/test' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran/test' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran/test' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran/test' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl' for d in examples fortran hl; do \ (cd $d && /usr/bin/make install-examples) || exit 1; \ done make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/examples' ../bin/mkdirs /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/c make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/examples' make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran/examples' ../../bin/mkdirs /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/fortran make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran/examples' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/fortran' make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl' for d in examples fortran; do \ (cd $d && /usr/bin/make install-examples) || exit 1; \ done make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/examples' ../../bin/mkdirs /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/hl/c make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/examples' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran/examples' ../../../bin/mkdirs /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/hl/fortran make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran/examples' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl/fortran' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/hdf5-1.12.0/hl'libtool: warning: relinking 'libhdf5_fortran.la' libtool: warning: relinking 'libhdf5_hl.la' libtool: warning: relinking 'libhdf5hl_fortran.la' + /usr/bin/install -c ./h5_write.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_read.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_extend_write.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_chunk_read.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_crtgrpd.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_subset.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_cmprss.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_rdwt.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_crtgrpar.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_extend.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_crtatt.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_crtgrp.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_crtdat.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_compound.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_group.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_select.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_attribute.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_mount.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_reference_deprec.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_drivers.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_extlink.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_elink_unix2win.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_ref_extern.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_ref_compat.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_ref2reg_deprec.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_shared_mesg.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/c/. + /usr/bin/install -c ./ph5example.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_vds.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_vds-exc.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_vds-exclim.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_vds-eiger.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_vds-simpleIO.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_vds-percival.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_vds-percival-unlim.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/c/. + /usr/bin/install -c ./h5_vds-percival-unlim-maxmin.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/c/. + /usr/bin/install -c run-c-ex.sh /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/c/. + /usr/bin/install -c ./README /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/. + /usr/bin/install -c ./run-all-ex.sh /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/. + /usr/bin/install -c ./h5_crtdat.f90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/fortran/. + /usr/bin/install -c ./h5_rdwt.f90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/fortran/. + /usr/bin/install -c ./h5_crtatt.f90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/fortran/. + /usr/bin/install -c ./h5_crtgrp.f90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/fortran/. + /usr/bin/install -c ./h5_crtgrpar.f90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/fortran/. + /usr/bin/install -c ./h5_crtgrpd.f90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/fortran/. + /usr/bin/install -c ./h5_extend.f90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/fortran/. + /usr/bin/install -c ./h5_subset.f90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/fortran/. + /usr/bin/install -c ./h5_cmprss.f90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/fortran/. + /usr/bin/install -c ./hyperslab.f90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/fortran/. + /usr/bin/install -c ./selectele.f90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/fortran/. + /usr/bin/install -c ./refobjexample.f90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/fortran/. + /usr/bin/install -c ./refregexample.f90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/fortran/. + /usr/bin/install -c ./mountexample.f90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/fortran/. + /usr/bin/install -c ./compound.f90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/fortran/. + /usr/bin/install -c ./ph5example.f90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/fortran/. + /usr/bin/install -c ./rwdset_fortran2003.f90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/fortran/. + /usr/bin/install -c ./nested_derived_type.f90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/fortran/. + /usr/bin/install -c ./compound_fortran2003.f90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/fortran/. + /usr/bin/install -c ./compound_complex_fortran2003.f90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/fortran/. + /usr/bin/install -c run-fortran-ex.sh /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/fortran/. + /usr/bin/install -c ./ex_lite1.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/hl/c/. + /usr/bin/install -c ./ex_lite2.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/hl/c/. + /usr/bin/install -c ./ex_lite3.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/hl/c/. + /usr/bin/install -c ./ptExampleFL.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/hl/c/. + /usr/bin/install -c ./ex_image1.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/hl/c/. + /usr/bin/install -c ./ex_image2.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/hl/c/. + /usr/bin/install -c ./ex_table_01.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/hl/c/. + /usr/bin/install -c ./ex_table_02.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/hl/c/. + /usr/bin/install -c ./ex_table_03.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/hl/c/. + /usr/bin/install -c ./ex_table_04.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/hl/c/. + /usr/bin/install -c ./ex_table_05.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/hl/c/. + /usr/bin/install -c ./ex_table_06.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/hl/c/. + /usr/bin/install -c ./ex_table_07.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/hl/c/. + /usr/bin/install -c ./ex_table_08.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/hl/c/. + /usr/bin/install -c ./ex_table_09.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/hl/c/. + /usr/bin/install -c ./ex_table_10.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/hl/c/. + /usr/bin/install -c ./ex_table_11.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/hl/c/. + /usr/bin/install -c ./ex_table_12.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/hl/c/. + /usr/bin/install -c ./ex_ds1.c /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/hl/c/. + /usr/bin/install -c ./image24pixel.txt /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/hl/c/. + /usr/bin/install -c ./image8.txt /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/hl/c/. + /usr/bin/install -c ./pal_rgb.h /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/hl/c/. + /usr/bin/install -c run-hlc-ex.sh /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/hl/c/. + /usr/bin/install -c ./run-hl-ex.sh /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/hl/. + /usr/bin/install -c ./exlite.f90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/hl/fortran/. + /usr/bin/install -c ./ex_ds1.f90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/hl/fortran/. + /usr/bin/install -c run-hlfortran-ex.sh /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/hdf5_examples/hl/fortran/. ********End of Output of running make on HDF5 ******* Checking for library in Download HDF5: ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5hl_fortran.a', 'libhdf5_fortran.a', 'libhdf5_hl.a', 'libhdf5.a'] Contents: ['share', 'lib', 'externalpackages', 'include', 'bin'] ================================================================================ TEST check from config.libraries(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [H5T_init] in library ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5hl_fortran.a', 'libhdf5_fortran.a', 'libhdf5_hl.a', 'libhdf5.a'] ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libz.a', 'libm.a'] Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.libraries/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.packages.valgrind -I/tmp/petsc-oluu3nld/config.packages.MPI -I/tmp/petsc-oluu3nld/config.packages.metis -I/tmp/petsc-oluu3nld/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char H5T_init(); static void _check_H5T_init() { H5T_init(); } int main() { _check_H5T_init();; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -o /tmp/petsc-oluu3nld/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.o -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lz -lm -lstdc++ -ldl Defined "HAVE_LIBHDF5HL_FORTRAN" to "1" Defined "HAVE_LIBHDF5_FORTRAN" to "1" Defined "HAVE_LIBHDF5_HL" to "1" Defined "HAVE_LIBHDF5" to "1" Checking for optional headers [] in Download HDF5: ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] ================================================================================ TEST checkInclude from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] Found header files [] in ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] Checking for headers ['hdf5.h'] in Download HDF5: ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] ================================================================================ TEST checkInclude from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['hdf5.h'] in ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] Checking include with compiler flags var CPPFLAGS ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include', '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include', '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -E -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.packages.metis -I/tmp/petsc-oluu3nld/config.packages.MPI -I/tmp/petsc-oluu3nld/config.packages.parmetis -I/tmp/petsc-oluu3nld/config.headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include /tmp/petsc-oluu3nld/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Found header files ['hdf5.h'] in ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "H5pubconf.h" #if defined(H5_HAVE_ZLIB_H) foundbeast #endif Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -E -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.packages.metis -I/tmp/petsc-oluu3nld/config.packages.MPI -I/tmp/petsc-oluu3nld/config.packages.parmetis -I/tmp/petsc-oluu3nld/config.packages.hdf5 -I/tmp/petsc-oluu3nld/config.headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include /tmp/petsc-oluu3nld/config.packages.hdf5/conftest.c Defined "HDF5_HAVE_ZLIB" to "1" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "H5pubconf.h" #if defined(H5_HAVE_SZLIB_H) foundbeast #endif Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -E -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.packages.metis -I/tmp/petsc-oluu3nld/config.packages.MPI -I/tmp/petsc-oluu3nld/config.packages.parmetis -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.packages.hdf5 -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include /tmp/petsc-oluu3nld/config.packages.hdf5/conftest.c Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "H5pubconf.h" #if defined(H5_HAVE_PARALLEL) foundbeast #endif Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -E -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.packages.metis -I/tmp/petsc-oluu3nld/config.packages.MPI -I/tmp/petsc-oluu3nld/config.packages.parmetis -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.packages.hdf5 -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include /tmp/petsc-oluu3nld/config.packages.hdf5/conftest.c Defined "HDF5_HAVE_PARALLEL" to "1" ================================================================================ TEST checkVersion from config.packages.hdf5(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:992) TESTING: checkVersion from config.packages.hdf5(config/BuildSystem/config/package.py:992) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "hdf5.h" ;petscpkgver(H5_VERSION); Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -E -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.packages.metis -I/tmp/petsc-oluu3nld/config.packages.MPI -I/tmp/petsc-oluu3nld/config.packages.parmetis -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.packages.hdf5 -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include /tmp/petsc-oluu3nld/config.packages.hdf5/conftest.c For hdf5 need 1.8 <= 1.12.0 <= ================================================================================ TEST checkSharedLibrary from config.packages.hdf5(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:926) TESTING: checkSharedLibrary from config.packages.hdf5(config/BuildSystem/config/package.py:926) By default we don't care about checking if the library is shared child config.packages.hdf5 224.987980 ================================================================================ TEST alternateConfigureLibrary from config.packages.med(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.med(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.med 0.001056 ================================================================================ TEST alternateConfigureLibrary from config.packages.cgns(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.cgns(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.cgns 0.000578 ================================================================================ TEST alternateConfigureLibrary from config.packages.ascem-io(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.ascem-io(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.ascem-io 0.000664 ================================================================================ TEST alternateConfigureLibrary from config.packages.pflotran(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.pflotran(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.pflotran 0.000641 ================================================================================ TEST alternateConfigureLibrary from config.packages.alquimia(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.alquimia(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.alquimia 0.000650 ================================================================================ TEST alternateConfigureLibrary from config.packages.SAMRAI(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.SAMRAI(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.SAMRAI 0.000640 ================================================================================ TEST alternateConfigureLibrary from config.packages.ADIOS2(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:930) TESTING: alternateConfigureLibrary from config.packages.ADIOS2(config/BuildSystem/config/package.py:930) Called if --with-packagename=0; does nothing by default child config.packages.ADIOS2 0.000671 child config.packages.flibs 0.000023 ================================================================================ TEST checkDependencies from config.packages.pnetcdf(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:843) TESTING: checkDependencies from config.packages.pnetcdf(config/BuildSystem/config/package.py:843) ================================================================================ TEST configureLibrary from config.packages.pnetcdf(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:868) TESTING: configureLibrary from config.packages.pnetcdf(config/BuildSystem/config/package.py:868) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional pnetcdf Looking for PNETCDF at git.pnetcdf, hg.pnetcdf or a directory starting with ['pnetcdf'] Could not locate an existing copy of PNETCDF: ['git.parmetis', 'Chaco-2.2-p2', 'mpich-3.3.2', 'hdf5-1.12.0', 'git.ctetgen', 'zlib-1.2.11', 'git.metis'] Downloading pnetcdf =============================================================================== Trying to download https://parallel-netcdf.github.io/Release/pnetcdf-1.12.1.tar.gz for PNETCDF =============================================================================== Downloading https://parallel-netcdf.github.io/Release/pnetcdf-1.12.1.tar.gz to /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/_d_pnetcdf-1.12.1.tar.gz Extracting /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/_d_pnetcdf-1.12.1.tar.gz Running Executable WITHOUT threads to time it out Executing: cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages; chmod -R a+r pnetcdf-1.12.1;find pnetcdf-1.12.1 -type d -name "*" -exec chmod a+rx {} \; Looking for PNETCDF at git.pnetcdf, hg.pnetcdf or a directory starting with ['pnetcdf'] Found a copy of PNETCDF in pnetcdf-1.12.1 All intermediate test results are stored in /tmp/petsc-oluu3nld/config.packages.pnetcdf Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -v stdout: mpifort for MPICH version 3.3.2 Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 --version stdout: GNU Fortran (Ubuntu 5.4.0-6ubuntu1~16.04.12) 5.4.0 20160609 Copyright (C) 2015 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING PNETCDF was just downloaded, forcing a rebuild because cannot determine if package has changed =============================================================================== Running configure on PNETCDF; this may take several minutes =============================================================================== Running Executable WITHOUT threads to time it out Executing: ./configure --prefix=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt MAKE=/usr/bin/make --libdir=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib CC="/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc" CFLAGS="-fstack-protector -O3" AR="/usr/bin/ar" ARFLAGS="cr" CXX="/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx" CXXFLAGS="-fstack-protector -O3" F90="/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90" F90FLAGS="-ffree-line-length-0 -O3" FFLAGS="-ffree-line-length-0 -O3" FC="/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90" F77="/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90" FCFLAGS="-ffree-line-length-0 -O3" --enable-shared LIBS="-Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lstdc++ -ldl -lmpifort -lmpi -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath" stdout: checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether /usr/bin/make sets $(MAKE)... yes checking whether /usr/bin/make supports nested variables... yes checking whether /usr/bin/make supports nested variables... 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BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc supports -fno-rtti -fno-exceptions... no checking for /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc option to produce PIC... -fPIC -DPIC checking if /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc PIC flag -fPIC -DPIC works... yes checking if /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc static flag -static works... no checking if /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc supports -c -o file.o... yes checking if /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc supports -c -o file.o... 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(cached) yes checking whether the /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking how to get verbose linking output from /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90... -v checking for Fortran 77 libraries of /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90... -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/5/../../.. -lstdc++ -ldl -lmpifort -lmpi -lgfortran -lm -lquadmath checking whether /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 is a valid MPI compiler... yes checking whether we are using the GNU Fortran compiler... yes checking whether /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 option to produce PIC... -fPIC checking if /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 PIC flag -fPIC works... yes checking if /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 static flag -static works... no checking if /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 supports -c -o file.o... yes checking if /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 supports -c -o file.o... (cached) yes checking whether the /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking how to get verbose linking output from /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90... -v checking for Fortran libraries of /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90... -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/5/../../.. -lstdc++ -ldl -lmpifort -lmpi -lgfortran -lm -lquadmath checking whether mpi.mod is available... yes checking whether /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 is a valid MPI compiler... yes checking for Fortran flag needed to accept free-form source... -ffree-form checking for Fortran flag to compile preprocessed .F files... none checking for Fortran flag to compile preprocessed .F90 files... none checking for Fortran flag to compile preprocessed .F files... 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(cached) mod checking whether Fortran 90 compiler capitalizes .mod filenames... no configure: creating ./config.lt config.lt: creating libtool checking whether MPI library is built with shared library support... yes checking for m4... m4 checking m4 additional flags... none needed checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for inline... inline checking for IEEE floating point format... yes checking whether strdup is declared... yes checking for strdup... yes checking whether strerror is declared... yes checking for strerror... yes checking whether access is declared... yes checking for access... yes checking whether unlink is declared... yes checking for unlink... yes checking whether strcasecmp is declared... yes checking for strcasecmp... yes checking search.h usability... yes checking search.h presence... yes checking for search.h... yes checking whether tsearch is declared... yes checking for tsearch... yes checking whether tdelete is declared... yes checking for tdelete... yes checking size of MPI_Offset... 8 checking size of MPI_Aint... 8 checking whether MPI_COMBINER_HVECTOR_INTEGER is defined... yes checking whether MPI_COMBINER_HINDEXED_INTEGER is defined... yes checking whether MPI_COMBINER_STRUCT_INTEGER is defined... yes checking whether char is unsigned... no checking whether byte ordering is bigendian... no checking for size_t... yes checking for off_t... yes checking for ssize_t... yes checking for ptrdiff_t... yes checking for schar... no checking for uchar... no checking for ushort... yes checking for uint... yes checking for longlong... no checking for ulonglong... no checking for int64... no checking for uint64... no checking size of size_t... 8 checking size of off_t... 8 checking size of char... 1 checking size of signed char... 1 checking size of unsigned char... 1 checking size of short... 2 checking size of unsigned short int... 2 checking size of unsigned short... 2 checking size of int... 4 checking size of unsigned int... 4 checking size of long... 8 checking size of float... 4 checking size of double... 8 checking size of long long... 8 checking size of unsigned long long... 8 checking size of ptrdiff_t... 8 checking size of ushort... 2 checking size of uint... 4 checking size of MPI_Fint... 4 checking for /usr/bin/nm... /usr/bin/nm -B checking nm flags... checking for C-equivalent to Fortran routine "SUB"... sub_ checking for Fortran "integer*1"... yes checking for Fortran "integer*2"... yes checking for Fortran "integer*8"... yes checking if Fortran "integer*1" is ... "signed char" in C checking if Fortran "integer*2" is ... "short" in C checking if Fortran "integer*8" is ... "int" in C checking if Fortran "integer" is ... "int" in C checking if Fortran "real" is ... "float" in C checking if Fortran "doubleprecision" is ... "double" in C checking for Fortran 77 GNU intrinsic INT... yes checking for Fortran 77 intrinsic INT1... no checking for Fortran 77 intrinsic INT2... yes checking for Fortran 77 intrinsic INT8... yes checking for gcov... gcov checking if C++ macro __func__ or __FUNCTION__ is defined... yes checking for latex... no checking for dvipdf... /usr/bin/dvipdf checking for mpiexec... /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpiexec checking for gcc... /usr/bin/gcc checking C compiler for serial utility programs... /usr/bin/gcc checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/dispatchers/Makefile config.status: creating src/libs/Makefile config.status: creating src/include/Makefile config.status: creating src/include/pnetcdf.h config.status: creating src/drivers/Makefile config.status: creating src/drivers/common/Makefile config.status: creating src/drivers/include/Makefile config.status: creating src/drivers/ncmpio/Makefile config.status: creating src/drivers/nc4io/Makefile config.status: creating src/drivers/ncadios/Makefile config.status: creating src/drivers/ncbbio/Makefile config.status: creating src/drivers/ncfoo/Makefile config.status: creating src/binding/Makefile config.status: creating src/binding/cxx/Makefile config.status: creating src/binding/f77/Makefile config.status: creating src/binding/f77/pnetcdf.inc config.status: creating src/binding/f90/Makefile config.status: creating src/binding/f90/pnetcdf.f90 config.status: creating src/binding/f90/api.fh config.status: creating src/binding/f90/nfmpi_constants.fh config.status: creating src/utils/Makefile config.status: creating src/utils/ncoffsets/Makefile config.status: creating src/utils/pnetcdf_version/Makefile config.status: creating src/utils/ncvalidator/Makefile config.status: creating src/utils/ncmpidiff/Makefile config.status: creating src/utils/ncmpidump/Makefile config.status: creating src/utils/ncmpigen/Makefile config.status: creating src/utils/ncmpilogdump/Makefile config.status: creating src/utils/pnetcdf-config config.status: creating src/packaging/Makefile config.status: creating src/packaging/pnetcdf.pc config.status: creating examples/Makefile config.status: creating examples/adios/Makefile config.status: creating examples/C/Makefile config.status: creating examples/tutorial/Makefile config.status: creating examples/CXX/Makefile config.status: creating examples/F77/Makefile config.status: creating examples/F90/Makefile config.status: creating examples/burst_buffer/Makefile config.status: creating benchmarks/Makefile config.status: creating benchmarks/C/Makefile config.status: creating benchmarks/FLASH-IO/Makefile config.status: creating doc/Makefile config.status: creating doc/pnetcdf-api/Makefile config.status: creating man/Makefile config.status: creating test/Makefile config.status: creating test/common/Makefile config.status: creating test/C/Makefile config.status: creating test/fandc/Makefile config.status: creating test/nc_test/Makefile config.status: creating test/cdf_format/Makefile config.status: creating test/nc4/Makefile config.status: creating test/adios/Makefile config.status: creating test/header/Makefile config.status: creating test/testcases/Makefile config.status: creating test/nonblocking/Makefile config.status: creating test/largefile/Makefile config.status: creating test/CXX/Makefile config.status: creating test/subfile/Makefile config.status: creating test/nf_test/Makefile config.status: creating test/nf_test/tests.inc config.status: creating test/nf90_test/Makefile config.status: creating test/nf90_test/tests.inc config.status: creating test/F90/Makefile config.status: creating test/burst_buffer/Makefile config.status: creating src/include/config.h config.status: executing depfiles commands config.status: executing libtool commands ------------------------------------------------------------------------------ PnetCDF Version 1.12.1 Features: Build static libraries - yes Build shared libraries - yes Build Fortran APIs - yes Build C++ APIs - yes Compilers: MPICC = /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc MPICXX = /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx MPIF77 = /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 MPIF90 = /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 CFLAGS = -fstack-protector -O3 CXXFLAGS = -fstack-protector -O3 FFLAGS = -ffree-line-length-0 -O3 FCFLAGS = -ffree-line-length-0 -O3 LIBS = -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lstdc++ -ldl -lmpifort -lmpi -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath Now run 'make' to build the library and utility tools. Then run 'make []' for testing and installation, where the optional can be: tests - build all test programs (build only, no run) check - run sequential test programs ptest - run parallel test programs on 4 MPI processes ptests - run parallel test programs on 3,4,6,8 MPI processes install - install PnetCDF library in /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt ------------------------------------------------------------------------------ =============================================================================== Running make on PNETCDF; this may take several minutes =============================================================================== Running Executable WITHOUT threads to time it out Executing: /usr/bin/make clean stdout: Making clean in src make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src' Making clean in include make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/include' rm -rf .libs _libs rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/include' Making clean in dispatchers make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/dispatchers' test -z "attr_getput.c var_getput.c *.gcda *.gcno *.gcov gmon.out" || rm -f attr_getput.c var_getput.c *.gcda *.gcno *.gcov gmon.out rm -rf .libs _libs test -z "libdispatchers.la" || rm -f libdispatchers.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/dispatchers' Making clean in drivers make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers' Making clean in include make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/include' test -z "ncx.h" || rm -f ncx.h rm -rf .libs _libs rm -f *.lo make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/include' Making clean in common make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/common' test -z "ncx.c convert_swap.c *.gcda *.gcno *.gcov gmon.out" || rm -f ncx.c convert_swap.c *.gcda *.gcno *.gcov gmon.out rm -rf .libs _libs test -z "libcommon.la" || rm -f libcommon.la rm -f ./so_locations rm -f *.o rm -f *.lo make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/common' Making clean in ncmpio make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/ncmpio' test -z "ncmpio_getput.c ncmpio_i_getput.c ncmpio_varn.c ncmpio_i_varn.c ncmpio_attr.c core core.* *.gcda *.gcno *.gcov gmon.out" || rm -f ncmpio_getput.c ncmpio_i_getput.c ncmpio_varn.c ncmpio_i_varn.c ncmpio_attr.c core core.* *.gcda *.gcno *.gcov gmon.out rm -rf .libs _libs test -z "libncmpio.la" || rm -f libncmpio.la rm -f ./so_locations rm -f *.o rm -f *.lo make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/ncmpio' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers' rm -rf .libs _libs rm -f *.lo make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers' Making clean in binding make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding' Making clean in cxx make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/cxx' test -z "core core.* *.gcda *.gcno *.gcov gmon.out pnetcdf a.out" || rm -f core core.* *.gcda *.gcno *.gcov gmon.out pnetcdf a.out rm -rf .libs _libs test -z "libcxx.la" || rm -f libcxx.la rm -f ./so_locations rm -f *.o rm -f *.lo make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/cxx' Making clean in f77 make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/f77' test -z "mpifnetcdf.h issyserrf.c xstrerrorf.c xstrerrnof.c xinq_libversf.c allf.c *.gcda *.gcno *.gcov gmon.out" || rm -f mpifnetcdf.h issyserrf.c xstrerrorf.c xstrerrnof.c xinq_libversf.c allf.c *.gcda *.gcno *.gcov gmon.out rm -rf .libs _libs test -z "libf77.la" || rm -f libf77.la rm -f ./so_locations rm -f *.o rm -f *.lo make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/f77' Making clean in f90 make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/f90' test -z "pnetcdf.mod getput_text.fh getput_var.fh getput_varn.fh getput_vard.fh *.gcda *.gcno *.gcov gmon.out" || rm -f pnetcdf.mod getput_text.fh getput_var.fh getput_varn.fh getput_vard.fh *.gcda *.gcno *.gcov gmon.out rm -rf .libs _libs test -z "libf90.la" || rm -f libf90.la rm -f ./so_locations rm -f *.o rm -f *.lo make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/f90' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding' rm -rf .libs _libs rm -f *.lo make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding' Making clean in packaging make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/packaging' rm -rf .libs _libs rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/packaging' Making clean in . make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src' rm -rf .libs _libs rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src' Making clean in libs make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/libs' test -z "a.out" || rm -f a.out test -z "libpnetcdf.la" || rm -f libpnetcdf.la rm -f ./so_locations rm -rf .libs _libs rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/libs' Making clean in utils make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils' Making clean in ncmpigen make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncmpigen' rm -f ncmpigen test -z "c0.nc c1.cdl c1.nc c2.cdl f0.nc ctest.c ctest ctest0.nc ctest1.cdl ftest.f ftest ftest0.nc ftest1.cdl lex.ncmpi.c y.tab.c y.tab.h core core.* *.gcda *.gcno *.gcov gmon.out" || rm -f c0.nc c1.cdl c1.nc c2.cdl f0.nc ctest.c ctest ctest0.nc ctest1.cdl ftest.f ftest ftest0.nc ftest1.cdl lex.ncmpi.c y.tab.c y.tab.h core core.* *.gcda *.gcno *.gcov gmon.out rm -rf .libs _libs rm -f *.o rm -f *.lo make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncmpigen' Making clean in ncmpidump make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncmpidump' rm -f ncmpidump test -z "test0.nc test1.nc test1.cdl test2.cdl core core.* *.gcda *.gcno *.gcov gmon.out" || rm -f test0.nc test1.nc test1.cdl test2.cdl core core.* *.gcda *.gcno *.gcov gmon.out rm -rf .libs _libs rm -f *.o rm -f *.lo make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncmpidump' Making clean in ncmpidiff make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncmpidiff' rm -f ncmpidiff cdfdiff test -z "core core.* *.gcda *.gcno *.gcov gmon.out" || rm -f core core.* *.gcda *.gcno *.gcov gmon.out rm -rf .libs _libs rm -f *.o rm -f *.lo make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncmpidiff' Making clean in ncvalidator make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncvalidator' rm -f ncvalidator rm -f ncvalidator tst_open test -z "core core.* *.gcda *.gcno *.gcov gmon.out" || rm -f core core.* *.gcda *.gcno *.gcov gmon.out rm -rf .libs _libs rm -f *.o test -z "xfail_runs.sh.log wrap_runs.sh.log" || rm -f xfail_runs.sh.log wrap_runs.sh.log test -z "xfail_runs.sh.trs wrap_runs.sh.trs" || rm -f xfail_runs.sh.trs wrap_runs.sh.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncvalidator' Making clean in pnetcdf_version make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/pnetcdf_version' rm -f pnetcdf_version rm -rf .libs _libs rm -f *.o rm -f *.lo make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/pnetcdf_version' Making clean in ncoffsets make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncoffsets' rm -f ncoffsets rm -rf .libs _libs rm -f *.o rm -f *.lo make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncoffsets' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils' rm -rf .libs _libs rm -f *.lo make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src' Making clean in man make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/man' test -z "pnetcdf.3 pnetcdf_f77.3 pnetcdf_f90.3" || rm -f pnetcdf.3 pnetcdf_f77.3 pnetcdf_f90.3 rm -rf .libs _libs rm -f *.lo make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/man' Making clean in examples make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples' Making clean in C make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/C' rm -f collective_write nonblocking_write nonblocking_write_in_def column_wise block_cyclic flexible_api get_info hints mput put_varn_float put_varn_int create_open global_attributes put_vara get_vara transpose transpose2D vard_int i_varn_int64 bput_varn_uint bput_varn_int64 fill_mode ghost_cell req_all vard_mvars time_var test -z "core core.* *.gcda *.gcno *.gcov gmon.out ./collective_write.nc ./nonblocking_write.nc ./nonblocking_write_in_def.nc ./column_wise.nc ./block_cyclic.nc ./flexible_api.nc ./get_info.nc ./hints.nc ./mput.nc ./put_varn_float.nc ./put_varn_int.nc ./create_open.nc ./global_attributes.nc ./put_vara.nc ./get_vara.nc ./transpose.nc ./transpose2D.nc ./vard_int.nc ./i_varn_int64.nc ./bput_varn_uint.nc ./bput_varn_int64.nc ./fill_mode.nc ./ghost_cell.nc ./req_all.nc ./vard_mvars.nc ./time_var.nc ./collective_write.bb.nc ./nonblocking_write.bb.nc ./nonblocking_write_in_def.bb.nc ./column_wise.bb.nc ./block_cyclic.bb.nc ./flexible_api.bb.nc ./get_info.bb.nc ./hints.bb.nc ./mput.bb.nc ./put_varn_float.bb.nc ./put_varn_int.bb.nc ./create_open.bb.nc ./global_attributes.bb.nc ./put_vara.bb.nc ./get_vara.bb.nc ./transpose.bb.nc ./transpose2D.bb.nc ./vard_int.bb.nc ./i_varn_int64.bb.nc ./bput_varn_uint.bb.nc ./bput_varn_int64.bb.nc ./fill_mode.bb.nc ./ghost_cell.bb.nc ./req_all.bb.nc ./vard_mvars.bb.nc ./time_var.bb.nc ./pthread.nc.* ./testfile.nc" || rm -f core core.* *.gcda *.gcno *.gcov gmon.out ./collective_write.nc ./nonblocking_write.nc ./nonblocking_write_in_def.nc ./column_wise.nc ./block_cyclic.nc ./flexible_api.nc ./get_info.nc ./hints.nc ./mput.nc ./put_varn_float.nc ./put_varn_int.nc ./create_open.nc ./global_attributes.nc ./put_vara.nc ./get_vara.nc ./transpose.nc ./transpose2D.nc ./vard_int.nc ./i_varn_int64.nc ./bput_varn_uint.nc ./bput_varn_int64.nc ./fill_mode.nc ./ghost_cell.nc ./req_all.nc ./vard_mvars.nc ./time_var.nc ./collective_write.bb.nc ./nonblocking_write.bb.nc ./nonblocking_write_in_def.bb.nc ./column_wise.bb.nc ./block_cyclic.bb.nc ./flexible_api.bb.nc ./get_info.bb.nc ./hints.bb.nc ./mput.bb.nc ./put_varn_float.bb.nc ./put_varn_int.bb.nc ./create_open.bb.nc ./global_attributes.bb.nc ./put_vara.bb.nc ./get_vara.bb.nc ./transpose.bb.nc ./transpose2D.bb.nc ./vard_int.bb.nc ./i_varn_int64.bb.nc ./bput_varn_uint.bb.nc ./bput_varn_int64.bb.nc ./fill_mode.bb.nc ./ghost_cell.bb.nc ./req_all.bb.nc ./vard_mvars.bb.nc ./time_var.bb.nc ./pthread.nc.* ./testfile.nc rm -rf .libs _libs rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/C' Making clean in tutorial make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/tutorial' rm -f pnetcdf-write-from-master pnetcdf-read-from-master pnetcdf-write-nfiles pnetcdf-read-nfiles pnetcdf-write-standard pnetcdf-read-standard pnetcdf-write-flexible pnetcdf-read-flexible pnetcdf-write-nb pnetcdf-read-nb pnetcdf-write-buffered pnetcdf-permute pnetcdf-write-bufferedf77 pnetcdf-write-bufferedf test -z "core core.* *.gcda *.gcno *.gcov gmon.out ./pnetcdf-write-nfiles.*.nc ./pnetcdf-write-from-master.nc ./pnetcdf-read-from-master.nc ./pnetcdf-write-nfiles.nc ./pnetcdf-read-nfiles.nc ./pnetcdf-write-standard.nc ./pnetcdf-read-standard.nc ./pnetcdf-write-flexible.nc ./pnetcdf-read-flexible.nc ./pnetcdf-write-nb.nc ./pnetcdf-read-nb.nc ./pnetcdf-write-buffered.nc ./pnetcdf-permute.nc ./pnetcdf-write-bufferedf77.nc ./pnetcdf-write-bufferedf.nc ./pnetcdf-write-from-master.bb.nc ./pnetcdf-read-from-master.bb.nc ./pnetcdf-write-nfiles.bb.nc ./pnetcdf-read-nfiles.bb.nc ./pnetcdf-write-standard.bb.nc ./pnetcdf-read-standard.bb.nc ./pnetcdf-write-flexible.bb.nc ./pnetcdf-read-flexible.bb.nc ./pnetcdf-write-nb.bb.nc ./pnetcdf-read-nb.bb.nc ./pnetcdf-write-buffered.bb.nc ./pnetcdf-permute.bb.nc ./pnetcdf-write-bufferedf77.bb.nc ./pnetcdf-write-bufferedf.bb.nc" || rm -f core core.* *.gcda *.gcno *.gcov gmon.out ./pnetcdf-write-nfiles.*.nc ./pnetcdf-write-from-master.nc ./pnetcdf-read-from-master.nc ./pnetcdf-write-nfiles.nc ./pnetcdf-read-nfiles.nc ./pnetcdf-write-standard.nc ./pnetcdf-read-standard.nc ./pnetcdf-write-flexible.nc ./pnetcdf-read-flexible.nc ./pnetcdf-write-nb.nc ./pnetcdf-read-nb.nc ./pnetcdf-write-buffered.nc ./pnetcdf-permute.nc ./pnetcdf-write-bufferedf77.nc ./pnetcdf-write-bufferedf.nc ./pnetcdf-write-from-master.bb.nc ./pnetcdf-read-from-master.bb.nc ./pnetcdf-write-nfiles.bb.nc ./pnetcdf-read-nfiles.bb.nc ./pnetcdf-write-standard.bb.nc ./pnetcdf-read-standard.bb.nc ./pnetcdf-write-flexible.bb.nc ./pnetcdf-read-flexible.bb.nc ./pnetcdf-write-nb.bb.nc ./pnetcdf-read-nb.bb.nc ./pnetcdf-write-buffered.bb.nc ./pnetcdf-permute.bb.nc ./pnetcdf-write-bufferedf77.bb.nc ./pnetcdf-write-bufferedf.bb.nc rm -rf .libs _libs rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/tutorial' Making clean in CXX make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/CXX' rm -f collective_write nonblocking_write column_wise block_cyclic flexible_api get_info hints put_varn_float put_varn_int put_vara get_vara transpose vard_int fill_mode SimpleXyWr test -z "core core.* *.gcda *.gcno *.gcov gmon.out ./collective_write.nc ./nonblocking_write.nc ./column_wise.nc ./block_cyclic.nc ./flexible_api.nc ./get_info.nc ./hints.nc ./put_varn_float.nc ./put_varn_int.nc ./put_vara.nc ./get_vara.nc ./transpose.nc ./vard_int.nc ./fill_mode.nc ./SimpleXyWr.nc ./collective_write.bb.nc ./nonblocking_write.bb.nc ./column_wise.bb.nc ./block_cyclic.bb.nc ./flexible_api.bb.nc ./get_info.bb.nc ./hints.bb.nc ./put_varn_float.bb.nc ./put_varn_int.bb.nc ./put_vara.bb.nc ./get_vara.bb.nc ./transpose.bb.nc ./vard_int.bb.nc ./fill_mode.bb.nc ./SimpleXyWr.bb.nc a.out" || rm -f core core.* *.gcda *.gcno *.gcov gmon.out ./collective_write.nc ./nonblocking_write.nc ./column_wise.nc ./block_cyclic.nc ./flexible_api.nc ./get_info.nc ./hints.nc ./put_varn_float.nc ./put_varn_int.nc ./put_vara.nc ./get_vara.nc ./transpose.nc ./vard_int.nc ./fill_mode.nc ./SimpleXyWr.nc ./collective_write.bb.nc ./nonblocking_write.bb.nc ./column_wise.bb.nc ./block_cyclic.bb.nc ./flexible_api.bb.nc ./get_info.bb.nc ./hints.bb.nc ./put_varn_float.bb.nc ./put_varn_int.bb.nc ./put_vara.bb.nc ./get_vara.bb.nc ./transpose.bb.nc ./vard_int.bb.nc ./fill_mode.bb.nc ./SimpleXyWr.bb.nc a.out rm -rf .libs _libs rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/CXX' Making clean in F77 make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/F77' rm -f nonblocking_write column_wise block_cyclic flexible_api get_info hints put_vara put_varn_real put_varn_int transpose i_varn_real bput_varn_int8 fill_mode vard_int time_var test -z "core core.* *.gcda *.gcno *.gcov gmon.out ./nonblocking_write.nc ./column_wise.nc ./block_cyclic.nc ./flexible_api.nc ./get_info.nc ./hints.nc ./put_vara.nc ./put_varn_real.nc ./put_varn_int.nc ./transpose.nc ./i_varn_real.nc ./bput_varn_int8.nc ./fill_mode.nc ./vard_int.nc ./time_var.nc ./nonblocking_write.bb.nc ./column_wise.bb.nc ./block_cyclic.bb.nc ./flexible_api.bb.nc ./get_info.bb.nc ./hints.bb.nc ./put_vara.bb.nc ./put_varn_real.bb.nc ./put_varn_int.bb.nc ./transpose.bb.nc ./i_varn_real.bb.nc ./bput_varn_int8.bb.nc ./fill_mode.bb.nc ./vard_int.bb.nc ./time_var.bb.nc" || rm -f core core.* *.gcda *.gcno *.gcov gmon.out ./nonblocking_write.nc ./column_wise.nc ./block_cyclic.nc ./flexible_api.nc ./get_info.nc ./hints.nc ./put_vara.nc ./put_varn_real.nc ./put_varn_int.nc ./transpose.nc ./i_varn_real.nc ./bput_varn_int8.nc ./fill_mode.nc ./vard_int.nc ./time_var.nc ./nonblocking_write.bb.nc ./column_wise.bb.nc ./block_cyclic.bb.nc ./flexible_api.bb.nc ./get_info.bb.nc ./hints.bb.nc ./put_vara.bb.nc ./put_varn_real.bb.nc ./put_varn_int.bb.nc ./transpose.bb.nc ./i_varn_real.bb.nc ./bput_varn_int8.bb.nc ./fill_mode.bb.nc ./vard_int.bb.nc ./time_var.bb.nc rm -rf .libs _libs rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/F77' Making clean in F90 make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/F90' rm -f nonblocking_write column_wise block_cyclic flexible_api get_info hints put_var put_varn_real put_varn_int transpose fill_mode vard_int test -z "core core.* *.gcda *.gcno *.gcov gmon.out ./nonblocking_write.nc ./column_wise.nc ./block_cyclic.nc ./flexible_api.nc ./get_info.nc ./hints.nc ./put_var.nc ./put_varn_real.nc ./put_varn_int.nc ./transpose.nc ./fill_mode.nc ./vard_int.nc ./nonblocking_write.bb.nc ./column_wise.bb.nc ./block_cyclic.bb.nc ./flexible_api.bb.nc ./get_info.bb.nc ./hints.bb.nc ./put_var.bb.nc ./put_varn_real.bb.nc ./put_varn_int.bb.nc ./transpose.bb.nc ./fill_mode.bb.nc ./vard_int.bb.nc" || rm -f core core.* *.gcda *.gcno *.gcov gmon.out ./nonblocking_write.nc ./column_wise.nc ./block_cyclic.nc ./flexible_api.nc ./get_info.nc ./hints.nc ./put_var.nc ./put_varn_real.nc ./put_varn_int.nc ./transpose.nc ./fill_mode.nc ./vard_int.nc ./nonblocking_write.bb.nc ./column_wise.bb.nc ./block_cyclic.bb.nc ./flexible_api.bb.nc ./get_info.bb.nc ./hints.bb.nc ./put_var.bb.nc ./put_varn_real.bb.nc ./put_varn_int.bb.nc ./transpose.bb.nc ./fill_mode.bb.nc ./vard_int.bb.nc rm -rf .libs _libs rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/F90' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples' rm -rf .libs _libs rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples' Making clean in benchmarks make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/benchmarks' Making clean in C make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/benchmarks/C' rm -f aggregation write_block_read_column test -z "core core.* *.gcda *.gcno *.gcov gmon.out ./aggregation.nc ./write_block_read_column.nc ./aggregation.bb.nc ./write_block_read_column.bb.nc" || rm -f core core.* *.gcda *.gcno *.gcov gmon.out ./aggregation.nc ./write_block_read_column.nc ./aggregation.bb.nc ./write_block_read_column.bb.nc rm -rf .libs _libs rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/benchmarks/C' Making clean in FLASH-IO make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/benchmarks/FLASH-IO' rm -f flash_benchmark_io test -z "core core.* *.gcda *.gcno *.gcov gmon.out ./flash_benchmark_io.ncmpi_chk_0000.nc ./flash_benchmark_io.ncmpi_plt_crn_0000.nc ./flash_benchmark_io.ncmpi_plt_cnt_0000.nc ./flash_benchmark_io.bb.ncmpi_chk_0000.nc ./flash_benchmark_io.bb.ncmpi_plt_crn_0000.nc ./flash_benchmark_io.bb.ncmpi_plt_cnt_0000.nc" || rm -f core core.* *.gcda *.gcno *.gcov gmon.out ./flash_benchmark_io.ncmpi_chk_0000.nc ./flash_benchmark_io.ncmpi_plt_crn_0000.nc ./flash_benchmark_io.ncmpi_plt_cnt_0000.nc ./flash_benchmark_io.bb.ncmpi_chk_0000.nc ./flash_benchmark_io.bb.ncmpi_plt_crn_0000.nc ./flash_benchmark_io.bb.ncmpi_plt_cnt_0000.nc rm -rf .libs _libs rm -f flash_benchmark_io rm -f *.o test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/benchmarks/FLASH-IO' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/benchmarks' rm -rf .libs _libs rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/benchmarks' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/benchmarks' Making clean in test make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test' Making clean in common make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/common' test -z "libtestutils.la libtestutilsf.la" || rm -f libtestutils.la libtestutilsf.la rm -f ./so_locations test -z "core.* *.gcda *.gcno *.gcov gmon.out testutilsf.mod" || rm -f core.* *.gcda *.gcno *.gcov gmon.out testutilsf.mod rm -rf .libs _libs rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/common' Making clean in C make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/C' rm -f pres_temp_4D_wr pres_temp_4D_rd test -z "./pres_temp_4D.nc ./pres_temp_4D.nc4 ./pres_temp_4D.bb.nc core core.* *.gcda *.gcno *.gcov gmon.out" || rm -f ./pres_temp_4D.nc ./pres_temp_4D.nc4 ./pres_temp_4D.bb.nc core core.* *.gcda *.gcno *.gcov gmon.out rm -rf .libs _libs rm -f *.o test -z "seq_runs.log" || rm -f seq_runs.log test -z "seq_runs.trs" || rm -f seq_runs.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/C' Making clean in fandc make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/fandc' rm -f pnctest csnap pnf_test pnctestf fixedform freeform test -z "core core.* *.gcda *.gcno *.gcov gmon.out" || rm -f core core.* *.gcda *.gcno *.gcov gmon.out rm -rf .libs _libs rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/fandc' Making clean in nc_test make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nc_test' rm -f t_nc tst_misc tst_norm tst_small tst_names tst_atts3 tst_atts tst_nofill nc_test test -z "tests.h test_get.c test_put.c test_iget.c test_iput.c test_read.c test_write.c ./test.nc ./scratch.nc ./tooth-fairy.nc ./tst_nofill.nc.fill ./tst_nofill.nc.nofill ./tst_atts3.nc.2 ./tst_atts3.bb.nc.2 core core.* *.gcda *.gcno *.gcov gmon.out ./t_nc.nc ./tst_misc.nc ./tst_norm.nc ./tst_small.nc ./tst_names.nc ./tst_atts3.nc ./tst_atts.nc ./t_nc.bb.nc ./tst_misc.bb.nc ./tst_norm.bb.nc ./tst_small.bb.nc ./tst_names.bb.nc ./tst_atts3.bb.nc ./tst_atts.bb.nc" || rm -f tests.h test_get.c test_put.c test_iget.c test_iput.c test_read.c test_write.c ./test.nc ./scratch.nc ./tooth-fairy.nc ./tst_nofill.nc.fill ./tst_nofill.nc.nofill ./tst_atts3.nc.2 ./tst_atts3.bb.nc.2 core core.* *.gcda *.gcno *.gcov gmon.out ./t_nc.nc ./tst_misc.nc ./tst_norm.nc ./tst_small.nc ./tst_names.nc ./tst_atts3.nc ./tst_atts.nc ./t_nc.bb.nc ./tst_misc.bb.nc ./tst_norm.bb.nc ./tst_small.bb.nc ./tst_names.bb.nc ./tst_atts3.bb.nc ./tst_atts.bb.nc rm -rf .libs _libs rm -f *.o test -z "t_nc.log tst_misc.log tst_norm.log tst_small.log tst_names.log tst_atts3.log tst_atts.log seq_runs.log" || rm -f t_nc.log tst_misc.log tst_norm.log tst_small.log tst_names.log tst_atts3.log tst_atts.log seq_runs.log test -z "t_nc.trs tst_misc.trs tst_norm.trs tst_small.trs tst_names.trs tst_atts3.trs tst_atts.trs seq_runs.trs" || rm -f t_nc.trs tst_misc.trs tst_norm.trs tst_small.trs tst_names.trs tst_atts3.trs tst_atts.trs seq_runs.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nc_test' Making clean in cdf_format make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/cdf_format' rm -f test_inq_format cdf_type dim_cdf12 tst_open_cdf5 tst_corrupt test -z "./cdf_type.nc ./cdf_type.bb.nc ./dim_cdf12.nc ./dim_cdf12.bb.nc core core.* *.gcda *.gcno *.gcov gmon.out" || rm -f ./cdf_type.nc ./cdf_type.bb.nc ./dim_cdf12.nc ./dim_cdf12.bb.nc core core.* *.gcda *.gcno *.gcov gmon.out rm -rf .libs _libs rm -f *.o test -z "cdf_type.log dim_cdf12.log seq_runs.log xfail_runs.log" || rm -f cdf_type.log dim_cdf12.log seq_runs.log xfail_runs.log test -z "cdf_type.trs dim_cdf12.trs seq_runs.trs xfail_runs.trs" || rm -f cdf_type.trs dim_cdf12.trs seq_runs.trs xfail_runs.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/cdf_format' Making clean in header make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/header' rm -f header_consistency test -z "./header_consistency.nc ./header_consistency.bb.nc core core.* *.gcda *.gcno *.gcov gmon.out" || rm -f ./header_consistency.nc ./header_consistency.bb.nc core core.* *.gcda *.gcno *.gcov gmon.out rm -rf .libs _libs rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/header' Making clean in testcases make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/testcases' rm -f ncmpi_vars_null_stride vectors collective_error test_varm alignment_test flexible flexible2 flexible_varm nonblocking noclobber record inq_num_vars varn_int modes one_record inq_recsize test_vard test_vard_rec test_vard_multiple varn_contig ivarn check_striping add_var buftype_free last_large_var check_type test_erange scalar null_args tst_dimsizes mix_collectives large_var_cdf5 tst_max_var_dims tst_info tst_vars_fill tst_def_var_fill test_fillvalue error_precedence tst_free_comm erange_fill varn_intf attrf buftype_freef put_parameter test_vardf inq_num_varsf inq_recsizef test_vardf90 varn_real put_all_kinds redef1 iput_all_kinds tst_version test -z "put_all_kinds.c erange_fill.c tst_vars_fill.c iput_all_kinds.c error_precedence.c null_args.c core core.* *.gcda *.gcno *.gcov gmon.out ./redef1.nc ./redef1.bb.nc ./redef2.nc ./tst_pthread.nc.* ./testfile.nc* ./ncmpi_vars_null_stride.nc ./vectors.nc ./collective_error.nc ./test_varm.nc ./alignment_test.nc ./flexible.nc ./flexible2.nc ./flexible_varm.nc ./nonblocking.nc ./noclobber.nc ./record.nc ./inq_num_vars.nc ./varn_int.nc ./modes.nc ./one_record.nc ./inq_recsize.nc ./test_vard.nc ./test_vard_rec.nc ./test_vard_multiple.nc ./varn_contig.nc ./ivarn.nc ./check_striping.nc ./add_var.nc ./buftype_free.nc ./last_large_var.nc ./check_type.nc ./test_erange.nc ./scalar.nc ./null_args.nc ./tst_dimsizes.nc ./mix_collectives.nc ./large_var_cdf5.nc ./tst_max_var_dims.nc ./tst_info.nc ./tst_vars_fill.nc ./tst_def_var_fill.nc ./test_fillvalue.nc ./error_precedence.nc ./tst_free_comm.nc ./erange_fill.nc ./varn_intf.nc ./attrf.nc ./buftype_freef.nc ./put_parameter.nc ./test_vardf.nc ./inq_num_varsf.nc ./inq_recsizef.nc ./test_vardf90.nc ./varn_real.nc ./put_all_kinds.nc ./redef1.nc ./iput_all_kinds.nc ./tst_version.nc ./ncmpi_vars_null_stride.nc1 ./vectors.nc1 ./collective_error.nc1 ./test_varm.nc1 ./alignment_test.nc1 ./flexible.nc1 ./flexible2.nc1 ./flexible_varm.nc1 ./nonblocking.nc1 ./noclobber.nc1 ./record.nc1 ./inq_num_vars.nc1 ./varn_int.nc1 ./modes.nc1 ./one_record.nc1 ./inq_recsize.nc1 ./test_vard.nc1 ./test_vard_rec.nc1 ./test_vard_multiple.nc1 ./varn_contig.nc1 ./ivarn.nc1 ./check_striping.nc1 ./add_var.nc1 ./buftype_free.nc1 ./last_large_var.nc1 ./check_type.nc1 ./test_erange.nc1 ./scalar.nc1 ./null_args.nc1 ./tst_dimsizes.nc1 ./mix_collectives.nc1 ./large_var_cdf5.nc1 ./tst_max_var_dims.nc1 ./tst_info.nc1 ./tst_vars_fill.nc1 ./tst_def_var_fill.nc1 ./test_fillvalue.nc1 ./error_precedence.nc1 ./tst_free_comm.nc1 ./erange_fill.nc1 ./varn_intf.nc1 ./attrf.nc1 ./buftype_freef.nc1 ./put_parameter.nc1 ./test_vardf.nc1 ./inq_num_varsf.nc1 ./inq_recsizef.nc1 ./test_vardf90.nc1 ./varn_real.nc1 ./put_all_kinds.nc1 ./redef1.nc1 ./iput_all_kinds.nc1 ./tst_version.nc1 ./ncmpi_vars_null_stride.nc2 ./vectors.nc2 ./collective_error.nc2 ./test_varm.nc2 ./alignment_test.nc2 ./flexible.nc2 ./flexible2.nc2 ./flexible_varm.nc2 ./nonblocking.nc2 ./noclobber.nc2 ./record.nc2 ./inq_num_vars.nc2 ./varn_int.nc2 ./modes.nc2 ./one_record.nc2 ./inq_recsize.nc2 ./test_vard.nc2 ./test_vard_rec.nc2 ./test_vard_multiple.nc2 ./varn_contig.nc2 ./ivarn.nc2 ./check_striping.nc2 ./add_var.nc2 ./buftype_free.nc2 ./last_large_var.nc2 ./check_type.nc2 ./test_erange.nc2 ./scalar.nc2 ./null_args.nc2 ./tst_dimsizes.nc2 ./mix_collectives.nc2 ./large_var_cdf5.nc2 ./tst_max_var_dims.nc2 ./tst_info.nc2 ./tst_vars_fill.nc2 ./tst_def_var_fill.nc2 ./test_fillvalue.nc2 ./error_precedence.nc2 ./tst_free_comm.nc2 ./erange_fill.nc2 ./varn_intf.nc2 ./attrf.nc2 ./buftype_freef.nc2 ./put_parameter.nc2 ./test_vardf.nc2 ./inq_num_varsf.nc2 ./inq_recsizef.nc2 ./test_vardf90.nc2 ./varn_real.nc2 ./put_all_kinds.nc2 ./redef1.nc2 ./iput_all_kinds.nc2 ./tst_version.nc2 ./ncmpi_vars_null_stride.nc3 ./vectors.nc3 ./collective_error.nc3 ./test_varm.nc3 ./alignment_test.nc3 ./flexible.nc3 ./flexible2.nc3 ./flexible_varm.nc3 ./nonblocking.nc3 ./noclobber.nc3 ./record.nc3 ./inq_num_vars.nc3 ./varn_int.nc3 ./modes.nc3 ./one_record.nc3 ./inq_recsize.nc3 ./test_vard.nc3 ./test_vard_rec.nc3 ./test_vard_multiple.nc3 ./varn_contig.nc3 ./ivarn.nc3 ./check_striping.nc3 ./add_var.nc3 ./buftype_free.nc3 ./last_large_var.nc3 ./check_type.nc3 ./test_erange.nc3 ./scalar.nc3 ./null_args.nc3 ./tst_dimsizes.nc3 ./mix_collectives.nc3 ./large_var_cdf5.nc3 ./tst_max_var_dims.nc3 ./tst_info.nc3 ./tst_vars_fill.nc3 ./tst_def_var_fill.nc3 ./test_fillvalue.nc3 ./error_precedence.nc3 ./tst_free_comm.nc3 ./erange_fill.nc3 ./varn_intf.nc3 ./attrf.nc3 ./buftype_freef.nc3 ./put_parameter.nc3 ./test_vardf.nc3 ./inq_num_varsf.nc3 ./inq_recsizef.nc3 ./test_vardf90.nc3 ./varn_real.nc3 ./put_all_kinds.nc3 ./redef1.nc3 ./iput_all_kinds.nc3 ./tst_version.nc3 ./ncmpi_vars_null_stride.nc4 ./vectors.nc4 ./collective_error.nc4 ./test_varm.nc4 ./alignment_test.nc4 ./flexible.nc4 ./flexible2.nc4 ./flexible_varm.nc4 ./nonblocking.nc4 ./noclobber.nc4 ./record.nc4 ./inq_num_vars.nc4 ./varn_int.nc4 ./modes.nc4 ./one_record.nc4 ./inq_recsize.nc4 ./test_vard.nc4 ./test_vard_rec.nc4 ./test_vard_multiple.nc4 ./varn_contig.nc4 ./ivarn.nc4 ./check_striping.nc4 ./add_var.nc4 ./buftype_free.nc4 ./last_large_var.nc4 ./check_type.nc4 ./test_erange.nc4 ./scalar.nc4 ./null_args.nc4 ./tst_dimsizes.nc4 ./mix_collectives.nc4 ./large_var_cdf5.nc4 ./tst_max_var_dims.nc4 ./tst_info.nc4 ./tst_vars_fill.nc4 ./tst_def_var_fill.nc4 ./test_fillvalue.nc4 ./error_precedence.nc4 ./tst_free_comm.nc4 ./erange_fill.nc4 ./varn_intf.nc4 ./attrf.nc4 ./buftype_freef.nc4 ./put_parameter.nc4 ./test_vardf.nc4 ./inq_num_varsf.nc4 ./inq_recsizef.nc4 ./test_vardf90.nc4 ./varn_real.nc4 ./put_all_kinds.nc4 ./redef1.nc4 ./iput_all_kinds.nc4 ./tst_version.nc4 ./ncmpi_vars_null_stride.nc5 ./vectors.nc5 ./collective_error.nc5 ./test_varm.nc5 ./alignment_test.nc5 ./flexible.nc5 ./flexible2.nc5 ./flexible_varm.nc5 ./nonblocking.nc5 ./noclobber.nc5 ./record.nc5 ./inq_num_vars.nc5 ./varn_int.nc5 ./modes.nc5 ./one_record.nc5 ./inq_recsize.nc5 ./test_vard.nc5 ./test_vard_rec.nc5 ./test_vard_multiple.nc5 ./varn_contig.nc5 ./ivarn.nc5 ./check_striping.nc5 ./add_var.nc5 ./buftype_free.nc5 ./last_large_var.nc5 ./check_type.nc5 ./test_erange.nc5 ./scalar.nc5 ./null_args.nc5 ./tst_dimsizes.nc5 ./mix_collectives.nc5 ./large_var_cdf5.nc5 ./tst_max_var_dims.nc5 ./tst_info.nc5 ./tst_vars_fill.nc5 ./tst_def_var_fill.nc5 ./test_fillvalue.nc5 ./error_precedence.nc5 ./tst_free_comm.nc5 ./erange_fill.nc5 ./varn_intf.nc5 ./attrf.nc5 ./buftype_freef.nc5 ./put_parameter.nc5 ./test_vardf.nc5 ./inq_num_varsf.nc5 ./inq_recsizef.nc5 ./test_vardf90.nc5 ./varn_real.nc5 ./put_all_kinds.nc5 ./redef1.nc5 ./iput_all_kinds.nc5 ./tst_version.nc5 ./ncmpi_vars_null_stride.bb.nc ./vectors.bb.nc ./collective_error.bb.nc ./test_varm.bb.nc ./alignment_test.bb.nc ./flexible.bb.nc ./flexible2.bb.nc ./flexible_varm.bb.nc ./nonblocking.bb.nc ./noclobber.bb.nc ./record.bb.nc ./inq_num_vars.bb.nc ./varn_int.bb.nc ./modes.bb.nc ./one_record.bb.nc ./inq_recsize.bb.nc ./test_vard.bb.nc ./test_vard_rec.bb.nc ./test_vard_multiple.bb.nc ./varn_contig.bb.nc ./ivarn.bb.nc ./check_striping.bb.nc ./add_var.bb.nc ./buftype_free.bb.nc ./last_large_var.bb.nc ./check_type.bb.nc ./test_erange.bb.nc ./scalar.bb.nc ./null_args.bb.nc ./tst_dimsizes.bb.nc ./mix_collectives.bb.nc ./large_var_cdf5.bb.nc ./tst_max_var_dims.bb.nc ./tst_info.bb.nc ./tst_vars_fill.bb.nc ./tst_def_var_fill.bb.nc ./test_fillvalue.bb.nc ./error_precedence.bb.nc ./tst_free_comm.bb.nc ./erange_fill.bb.nc ./varn_intf.bb.nc ./attrf.bb.nc ./buftype_freef.bb.nc ./put_parameter.bb.nc ./test_vardf.bb.nc ./inq_num_varsf.bb.nc ./inq_recsizef.bb.nc ./test_vardf90.bb.nc ./varn_real.bb.nc ./put_all_kinds.bb.nc ./redef1.bb.nc ./iput_all_kinds.bb.nc ./tst_version.bb.nc ./ncmpi_vars_null_stride.bb.nc1 ./vectors.bb.nc1 ./collective_error.bb.nc1 ./test_varm.bb.nc1 ./alignment_test.bb.nc1 ./flexible.bb.nc1 ./flexible2.bb.nc1 ./flexible_varm.bb.nc1 ./nonblocking.bb.nc1 ./noclobber.bb.nc1 ./record.bb.nc1 ./inq_num_vars.bb.nc1 ./varn_int.bb.nc1 ./modes.bb.nc1 ./one_record.bb.nc1 ./inq_recsize.bb.nc1 ./test_vard.bb.nc1 ./test_vard_rec.bb.nc1 ./test_vard_multiple.bb.nc1 ./varn_contig.bb.nc1 ./ivarn.bb.nc1 ./check_striping.bb.nc1 ./add_var.bb.nc1 ./buftype_free.bb.nc1 ./last_large_var.bb.nc1 ./check_type.bb.nc1 ./test_erange.bb.nc1 ./scalar.bb.nc1 ./null_args.bb.nc1 ./tst_dimsizes.bb.nc1 ./mix_collectives.bb.nc1 ./large_var_cdf5.bb.nc1 ./tst_max_var_dims.bb.nc1 ./tst_info.bb.nc1 ./tst_vars_fill.bb.nc1 ./tst_def_var_fill.bb.nc1 ./test_fillvalue.bb.nc1 ./error_precedence.bb.nc1 ./tst_free_comm.bb.nc1 ./erange_fill.bb.nc1 ./varn_intf.bb.nc1 ./attrf.bb.nc1 ./buftype_freef.bb.nc1 ./put_parameter.bb.nc1 ./test_vardf.bb.nc1 ./inq_num_varsf.bb.nc1 ./inq_recsizef.bb.nc1 ./test_vardf90.bb.nc1 ./varn_real.bb.nc1 ./put_all_kinds.bb.nc1 ./redef1.bb.nc1 ./iput_all_kinds.bb.nc1 ./tst_version.bb.nc1 ./ncmpi_vars_null_stride.bb.nc2 ./vectors.bb.nc2 ./collective_error.bb.nc2 ./test_varm.bb.nc2 ./alignment_test.bb.nc2 ./flexible.bb.nc2 ./flexible2.bb.nc2 ./flexible_varm.bb.nc2 ./nonblocking.bb.nc2 ./noclobber.bb.nc2 ./record.bb.nc2 ./inq_num_vars.bb.nc2 ./varn_int.bb.nc2 ./modes.bb.nc2 ./one_record.bb.nc2 ./inq_recsize.bb.nc2 ./test_vard.bb.nc2 ./test_vard_rec.bb.nc2 ./test_vard_multiple.bb.nc2 ./varn_contig.bb.nc2 ./ivarn.bb.nc2 ./check_striping.bb.nc2 ./add_var.bb.nc2 ./buftype_free.bb.nc2 ./last_large_var.bb.nc2 ./check_type.bb.nc2 ./test_erange.bb.nc2 ./scalar.bb.nc2 ./null_args.bb.nc2 ./tst_dimsizes.bb.nc2 ./mix_collectives.bb.nc2 ./large_var_cdf5.bb.nc2 ./tst_max_var_dims.bb.nc2 ./tst_info.bb.nc2 ./tst_vars_fill.bb.nc2 ./tst_def_var_fill.bb.nc2 ./test_fillvalue.bb.nc2 ./error_precedence.bb.nc2 ./tst_free_comm.bb.nc2 ./erange_fill.bb.nc2 ./varn_intf.bb.nc2 ./attrf.bb.nc2 ./buftype_freef.bb.nc2 ./put_parameter.bb.nc2 ./test_vardf.bb.nc2 ./inq_num_varsf.bb.nc2 ./inq_recsizef.bb.nc2 ./test_vardf90.bb.nc2 ./varn_real.bb.nc2 ./put_all_kinds.bb.nc2 ./redef1.bb.nc2 ./iput_all_kinds.bb.nc2 ./tst_version.bb.nc2 ./ncmpi_vars_null_stride.bb.nc3 ./vectors.bb.nc3 ./collective_error.bb.nc3 ./test_varm.bb.nc3 ./alignment_test.bb.nc3 ./flexible.bb.nc3 ./flexible2.bb.nc3 ./flexible_varm.bb.nc3 ./nonblocking.bb.nc3 ./noclobber.bb.nc3 ./record.bb.nc3 ./inq_num_vars.bb.nc3 ./varn_int.bb.nc3 ./modes.bb.nc3 ./one_record.bb.nc3 ./inq_recsize.bb.nc3 ./test_vard.bb.nc3 ./test_vard_rec.bb.nc3 ./test_vard_multiple.bb.nc3 ./varn_contig.bb.nc3 ./ivarn.bb.nc3 ./check_striping.bb.nc3 ./add_var.bb.nc3 ./buftype_free.bb.nc3 ./last_large_var.bb.nc3 ./check_type.bb.nc3 ./test_erange.bb.nc3 ./scalar.bb.nc3 ./null_args.bb.nc3 ./tst_dimsizes.bb.nc3 ./mix_collectives.bb.nc3 ./large_var_cdf5.bb.nc3 ./tst_max_var_dims.bb.nc3 ./tst_info.bb.nc3 ./tst_vars_fill.bb.nc3 ./tst_def_var_fill.bb.nc3 ./test_fillvalue.bb.nc3 ./error_precedence.bb.nc3 ./tst_free_comm.bb.nc3 ./erange_fill.bb.nc3 ./varn_intf.bb.nc3 ./attrf.bb.nc3 ./buftype_freef.bb.nc3 ./put_parameter.bb.nc3 ./test_vardf.bb.nc3 ./inq_num_varsf.bb.nc3 ./inq_recsizef.bb.nc3 ./test_vardf90.bb.nc3 ./varn_real.bb.nc3 ./put_all_kinds.bb.nc3 ./redef1.bb.nc3 ./iput_all_kinds.bb.nc3 ./tst_version.bb.nc3 ./ncmpi_vars_null_stride.bb.nc4 ./vectors.bb.nc4 ./collective_error.bb.nc4 ./test_varm.bb.nc4 ./alignment_test.bb.nc4 ./flexible.bb.nc4 ./flexible2.bb.nc4 ./flexible_varm.bb.nc4 ./nonblocking.bb.nc4 ./noclobber.bb.nc4 ./record.bb.nc4 ./inq_num_vars.bb.nc4 ./varn_int.bb.nc4 ./modes.bb.nc4 ./one_record.bb.nc4 ./inq_recsize.bb.nc4 ./test_vard.bb.nc4 ./test_vard_rec.bb.nc4 ./test_vard_multiple.bb.nc4 ./varn_contig.bb.nc4 ./ivarn.bb.nc4 ./check_striping.bb.nc4 ./add_var.bb.nc4 ./buftype_free.bb.nc4 ./last_large_var.bb.nc4 ./check_type.bb.nc4 ./test_erange.bb.nc4 ./scalar.bb.nc4 ./null_args.bb.nc4 ./tst_dimsizes.bb.nc4 ./mix_collectives.bb.nc4 ./large_var_cdf5.bb.nc4 ./tst_max_var_dims.bb.nc4 ./tst_info.bb.nc4 ./tst_vars_fill.bb.nc4 ./tst_def_var_fill.bb.nc4 ./test_fillvalue.bb.nc4 ./error_precedence.bb.nc4 ./tst_free_comm.bb.nc4 ./erange_fill.bb.nc4 ./varn_intf.bb.nc4 ./attrf.bb.nc4 ./buftype_freef.bb.nc4 ./put_parameter.bb.nc4 ./test_vardf.bb.nc4 ./inq_num_varsf.bb.nc4 ./inq_recsizef.bb.nc4 ./test_vardf90.bb.nc4 ./varn_real.bb.nc4 ./put_all_kinds.bb.nc4 ./redef1.bb.nc4 ./iput_all_kinds.bb.nc4 ./tst_version.bb.nc4 ./ncmpi_vars_null_stride.bb.nc5 ./vectors.bb.nc5 ./collective_error.bb.nc5 ./test_varm.bb.nc5 ./alignment_test.bb.nc5 ./flexible.bb.nc5 ./flexible2.bb.nc5 ./flexible_varm.bb.nc5 ./nonblocking.bb.nc5 ./noclobber.bb.nc5 ./record.bb.nc5 ./inq_num_vars.bb.nc5 ./varn_int.bb.nc5 ./modes.bb.nc5 ./one_record.bb.nc5 ./inq_recsize.bb.nc5 ./test_vard.bb.nc5 ./test_vard_rec.bb.nc5 ./test_vard_multiple.bb.nc5 ./varn_contig.bb.nc5 ./ivarn.bb.nc5 ./check_striping.bb.nc5 ./add_var.bb.nc5 ./buftype_free.bb.nc5 ./last_large_var.bb.nc5 ./check_type.bb.nc5 ./test_erange.bb.nc5 ./scalar.bb.nc5 ./null_args.bb.nc5 ./tst_dimsizes.bb.nc5 ./mix_collectives.bb.nc5 ./large_var_cdf5.bb.nc5 ./tst_max_var_dims.bb.nc5 ./tst_info.bb.nc5 ./tst_vars_fill.bb.nc5 ./tst_def_var_fill.bb.nc5 ./test_fillvalue.bb.nc5 ./error_precedence.bb.nc5 ./tst_free_comm.bb.nc5 ./erange_fill.bb.nc5 ./varn_intf.bb.nc5 ./attrf.bb.nc5 ./buftype_freef.bb.nc5 ./put_parameter.bb.nc5 ./test_vardf.bb.nc5 ./inq_num_varsf.bb.nc5 ./inq_recsizef.bb.nc5 ./test_vardf90.bb.nc5 ./varn_real.bb.nc5 ./put_all_kinds.bb.nc5 ./redef1.bb.nc5 ./iput_all_kinds.bb.nc5 ./tst_version.bb.nc5" || rm -f put_all_kinds.c erange_fill.c tst_vars_fill.c iput_all_kinds.c error_precedence.c null_args.c core core.* *.gcda *.gcno *.gcov gmon.out ./redef1.nc ./redef1.bb.nc ./redef2.nc ./tst_pthread.nc.* ./testfile.nc* ./ncmpi_vars_null_stride.nc ./vectors.nc ./collective_error.nc ./test_varm.nc ./alignment_test.nc ./flexible.nc ./flexible2.nc ./flexible_varm.nc ./nonblocking.nc ./noclobber.nc ./record.nc ./inq_num_vars.nc ./varn_int.nc ./modes.nc ./one_record.nc ./inq_recsize.nc ./test_vard.nc ./test_vard_rec.nc ./test_vard_multiple.nc ./varn_contig.nc ./ivarn.nc ./check_striping.nc ./add_var.nc ./buftype_free.nc ./last_large_var.nc ./check_type.nc ./test_erange.nc ./scalar.nc ./null_args.nc ./tst_dimsizes.nc ./mix_collectives.nc ./large_var_cdf5.nc ./tst_max_var_dims.nc ./tst_info.nc ./tst_vars_fill.nc ./tst_def_var_fill.nc ./test_fillvalue.nc ./error_precedence.nc ./tst_free_comm.nc ./erange_fill.nc ./varn_intf.nc ./attrf.nc ./buftype_freef.nc ./put_parameter.nc ./test_vardf.nc ./inq_num_varsf.nc ./inq_recsizef.nc ./test_vardf90.nc ./varn_real.nc ./put_all_kinds.nc ./redef1.nc ./iput_all_kinds.nc ./tst_version.nc ./ncmpi_vars_null_stride.nc1 ./vectors.nc1 ./collective_error.nc1 ./test_varm.nc1 ./alignment_test.nc1 ./flexible.nc1 ./flexible2.nc1 ./flexible_varm.nc1 ./nonblocking.nc1 ./noclobber.nc1 ./record.nc1 ./inq_num_vars.nc1 ./varn_int.nc1 ./modes.nc1 ./one_record.nc1 ./inq_recsize.nc1 ./test_vard.nc1 ./test_vard_rec.nc1 ./test_vard_multiple.nc1 ./varn_contig.nc1 ./ivarn.nc1 ./check_striping.nc1 ./add_var.nc1 ./buftype_free.nc1 ./last_large_var.nc1 ./check_type.nc1 ./test_erange.nc1 ./scalar.nc1 ./null_args.nc1 ./tst_dimsizes.nc1 ./mix_collectives.nc1 ./large_var_cdf5.nc1 ./tst_max_var_dims.nc1 ./tst_info.nc1 ./tst_vars_fill.nc1 ./tst_def_var_fill.nc1 ./test_fillvalue.nc1 ./error_precedence.nc1 ./tst_free_comm.nc1 ./erange_fill.nc1 ./varn_intf.nc1 ./attrf.nc1 ./buftype_freef.nc1 ./put_parameter.nc1 ./test_vardf.nc1 ./inq_num_varsf.nc1 ./inq_recsizef.nc1 ./test_vardf90.nc1 ./varn_real.nc1 ./put_all_kinds.nc1 ./redef1.nc1 ./iput_all_kinds.nc1 ./tst_version.nc1 ./ncmpi_vars_null_stride.nc2 ./vectors.nc2 ./collective_error.nc2 ./test_varm.nc2 ./alignment_test.nc2 ./flexible.nc2 ./flexible2.nc2 ./flexible_varm.nc2 ./nonblocking.nc2 ./noclobber.nc2 ./record.nc2 ./inq_num_vars.nc2 ./varn_int.nc2 ./modes.nc2 ./one_record.nc2 ./inq_recsize.nc2 ./test_vard.nc2 ./test_vard_rec.nc2 ./test_vard_multiple.nc2 ./varn_contig.nc2 ./ivarn.nc2 ./check_striping.nc2 ./add_var.nc2 ./buftype_free.nc2 ./last_large_var.nc2 ./check_type.nc2 ./test_erange.nc2 ./scalar.nc2 ./null_args.nc2 ./tst_dimsizes.nc2 ./mix_collectives.nc2 ./large_var_cdf5.nc2 ./tst_max_var_dims.nc2 ./tst_info.nc2 ./tst_vars_fill.nc2 ./tst_def_var_fill.nc2 ./test_fillvalue.nc2 ./error_precedence.nc2 ./tst_free_comm.nc2 ./erange_fill.nc2 ./varn_intf.nc2 ./attrf.nc2 ./buftype_freef.nc2 ./put_parameter.nc2 ./test_vardf.nc2 ./inq_num_varsf.nc2 ./inq_recsizef.nc2 ./test_vardf90.nc2 ./varn_real.nc2 ./put_all_kinds.nc2 ./redef1.nc2 ./iput_all_kinds.nc2 ./tst_version.nc2 ./ncmpi_vars_null_stride.nc3 ./vectors.nc3 ./collective_error.nc3 ./test_varm.nc3 ./alignment_test.nc3 ./flexible.nc3 ./flexible2.nc3 ./flexible_varm.nc3 ./nonblocking.nc3 ./noclobber.nc3 ./record.nc3 ./inq_num_vars.nc3 ./varn_int.nc3 ./modes.nc3 ./one_record.nc3 ./inq_recsize.nc3 ./test_vard.nc3 ./test_vard_rec.nc3 ./test_vard_multiple.nc3 ./varn_contig.nc3 ./ivarn.nc3 ./check_striping.nc3 ./add_var.nc3 ./buftype_free.nc3 ./last_large_var.nc3 ./check_type.nc3 ./test_erange.nc3 ./scalar.nc3 ./null_args.nc3 ./tst_dimsizes.nc3 ./mix_collectives.nc3 ./large_var_cdf5.nc3 ./tst_max_var_dims.nc3 ./tst_info.nc3 ./tst_vars_fill.nc3 ./tst_def_var_fill.nc3 ./test_fillvalue.nc3 ./error_precedence.nc3 ./tst_free_comm.nc3 ./erange_fill.nc3 ./varn_intf.nc3 ./attrf.nc3 ./buftype_freef.nc3 ./put_parameter.nc3 ./test_vardf.nc3 ./inq_num_varsf.nc3 ./inq_recsizef.nc3 ./test_vardf90.nc3 ./varn_real.nc3 ./put_all_kinds.nc3 ./redef1.nc3 ./iput_all_kinds.nc3 ./tst_version.nc3 ./ncmpi_vars_null_stride.nc4 ./vectors.nc4 ./collective_error.nc4 ./test_varm.nc4 ./alignment_test.nc4 ./flexible.nc4 ./flexible2.nc4 ./flexible_varm.nc4 ./nonblocking.nc4 ./noclobber.nc4 ./record.nc4 ./inq_num_vars.nc4 ./varn_int.nc4 ./modes.nc4 ./one_record.nc4 ./inq_recsize.nc4 ./test_vard.nc4 ./test_vard_rec.nc4 ./test_vard_multiple.nc4 ./varn_contig.nc4 ./ivarn.nc4 ./check_striping.nc4 ./add_var.nc4 ./buftype_free.nc4 ./last_large_var.nc4 ./check_type.nc4 ./test_erange.nc4 ./scalar.nc4 ./null_args.nc4 ./tst_dimsizes.nc4 ./mix_collectives.nc4 ./large_var_cdf5.nc4 ./tst_max_var_dims.nc4 ./tst_info.nc4 ./tst_vars_fill.nc4 ./tst_def_var_fill.nc4 ./test_fillvalue.nc4 ./error_precedence.nc4 ./tst_free_comm.nc4 ./erange_fill.nc4 ./varn_intf.nc4 ./attrf.nc4 ./buftype_freef.nc4 ./put_parameter.nc4 ./test_vardf.nc4 ./inq_num_varsf.nc4 ./inq_recsizef.nc4 ./test_vardf90.nc4 ./varn_real.nc4 ./put_all_kinds.nc4 ./redef1.nc4 ./iput_all_kinds.nc4 ./tst_version.nc4 ./ncmpi_vars_null_stride.nc5 ./vectors.nc5 ./collective_error.nc5 ./test_varm.nc5 ./alignment_test.nc5 ./flexible.nc5 ./flexible2.nc5 ./flexible_varm.nc5 ./nonblocking.nc5 ./noclobber.nc5 ./record.nc5 ./inq_num_vars.nc5 ./varn_int.nc5 ./modes.nc5 ./one_record.nc5 ./inq_recsize.nc5 ./test_vard.nc5 ./test_vard_rec.nc5 ./test_vard_multiple.nc5 ./varn_contig.nc5 ./ivarn.nc5 ./check_striping.nc5 ./add_var.nc5 ./buftype_free.nc5 ./last_large_var.nc5 ./check_type.nc5 ./test_erange.nc5 ./scalar.nc5 ./null_args.nc5 ./tst_dimsizes.nc5 ./mix_collectives.nc5 ./large_var_cdf5.nc5 ./tst_max_var_dims.nc5 ./tst_info.nc5 ./tst_vars_fill.nc5 ./tst_def_var_fill.nc5 ./test_fillvalue.nc5 ./error_precedence.nc5 ./tst_free_comm.nc5 ./erange_fill.nc5 ./varn_intf.nc5 ./attrf.nc5 ./buftype_freef.nc5 ./put_parameter.nc5 ./test_vardf.nc5 ./inq_num_varsf.nc5 ./inq_recsizef.nc5 ./test_vardf90.nc5 ./varn_real.nc5 ./put_all_kinds.nc5 ./redef1.nc5 ./iput_all_kinds.nc5 ./tst_version.nc5 ./ncmpi_vars_null_stride.bb.nc ./vectors.bb.nc ./collective_error.bb.nc ./test_varm.bb.nc ./alignment_test.bb.nc ./flexible.bb.nc ./flexible2.bb.nc ./flexible_varm.bb.nc ./nonblocking.bb.nc ./noclobber.bb.nc ./record.bb.nc ./inq_num_vars.bb.nc ./varn_int.bb.nc ./modes.bb.nc ./one_record.bb.nc ./inq_recsize.bb.nc ./test_vard.bb.nc ./test_vard_rec.bb.nc ./test_vard_multiple.bb.nc ./varn_contig.bb.nc ./ivarn.bb.nc ./check_striping.bb.nc ./add_var.bb.nc ./buftype_free.bb.nc ./last_large_var.bb.nc ./check_type.bb.nc ./test_erange.bb.nc ./scalar.bb.nc ./null_args.bb.nc ./tst_dimsizes.bb.nc ./mix_collectives.bb.nc ./large_var_cdf5.bb.nc ./tst_max_var_dims.bb.nc ./tst_info.bb.nc ./tst_vars_fill.bb.nc ./tst_def_var_fill.bb.nc ./test_fillvalue.bb.nc ./error_precedence.bb.nc ./tst_free_comm.bb.nc ./erange_fill.bb.nc ./varn_intf.bb.nc ./attrf.bb.nc ./buftype_freef.bb.nc ./put_parameter.bb.nc ./test_vardf.bb.nc ./inq_num_varsf.bb.nc ./inq_recsizef.bb.nc ./test_vardf90.bb.nc ./varn_real.bb.nc ./put_all_kinds.bb.nc ./redef1.bb.nc ./iput_all_kinds.bb.nc ./tst_version.bb.nc ./ncmpi_vars_null_stride.bb.nc1 ./vectors.bb.nc1 ./collective_error.bb.nc1 ./test_varm.bb.nc1 ./alignment_test.bb.nc1 ./flexible.bb.nc1 ./flexible2.bb.nc1 ./flexible_varm.bb.nc1 ./nonblocking.bb.nc1 ./noclobber.bb.nc1 ./record.bb.nc1 ./inq_num_vars.bb.nc1 ./varn_int.bb.nc1 ./modes.bb.nc1 ./one_record.bb.nc1 ./inq_recsize.bb.nc1 ./test_vard.bb.nc1 ./test_vard_rec.bb.nc1 ./test_vard_multiple.bb.nc1 ./varn_contig.bb.nc1 ./ivarn.bb.nc1 ./check_striping.bb.nc1 ./add_var.bb.nc1 ./buftype_free.bb.nc1 ./last_large_var.bb.nc1 ./check_type.bb.nc1 ./test_erange.bb.nc1 ./scalar.bb.nc1 ./null_args.bb.nc1 ./tst_dimsizes.bb.nc1 ./mix_collectives.bb.nc1 ./large_var_cdf5.bb.nc1 ./tst_max_var_dims.bb.nc1 ./tst_info.bb.nc1 ./tst_vars_fill.bb.nc1 ./tst_def_var_fill.bb.nc1 ./test_fillvalue.bb.nc1 ./error_precedence.bb.nc1 ./tst_free_comm.bb.nc1 ./erange_fill.bb.nc1 ./varn_intf.bb.nc1 ./attrf.bb.nc1 ./buftype_freef.bb.nc1 ./put_parameter.bb.nc1 ./test_vardf.bb.nc1 ./inq_num_varsf.bb.nc1 ./inq_recsizef.bb.nc1 ./test_vardf90.bb.nc1 ./varn_real.bb.nc1 ./put_all_kinds.bb.nc1 ./redef1.bb.nc1 ./iput_all_kinds.bb.nc1 ./tst_version.bb.nc1 ./ncmpi_vars_null_stride.bb.nc2 ./vectors.bb.nc2 ./collective_error.bb.nc2 ./test_varm.bb.nc2 ./alignment_test.bb.nc2 ./flexible.bb.nc2 ./flexible2.bb.nc2 ./flexible_varm.bb.nc2 ./nonblocking.bb.nc2 ./noclobber.bb.nc2 ./record.bb.nc2 ./inq_num_vars.bb.nc2 ./varn_int.bb.nc2 ./modes.bb.nc2 ./one_record.bb.nc2 ./inq_recsize.bb.nc2 ./test_vard.bb.nc2 ./test_vard_rec.bb.nc2 ./test_vard_multiple.bb.nc2 ./varn_contig.bb.nc2 ./ivarn.bb.nc2 ./check_striping.bb.nc2 ./add_var.bb.nc2 ./buftype_free.bb.nc2 ./last_large_var.bb.nc2 ./check_type.bb.nc2 ./test_erange.bb.nc2 ./scalar.bb.nc2 ./null_args.bb.nc2 ./tst_dimsizes.bb.nc2 ./mix_collectives.bb.nc2 ./large_var_cdf5.bb.nc2 ./tst_max_var_dims.bb.nc2 ./tst_info.bb.nc2 ./tst_vars_fill.bb.nc2 ./tst_def_var_fill.bb.nc2 ./test_fillvalue.bb.nc2 ./error_precedence.bb.nc2 ./tst_free_comm.bb.nc2 ./erange_fill.bb.nc2 ./varn_intf.bb.nc2 ./attrf.bb.nc2 ./buftype_freef.bb.nc2 ./put_parameter.bb.nc2 ./test_vardf.bb.nc2 ./inq_num_varsf.bb.nc2 ./inq_recsizef.bb.nc2 ./test_vardf90.bb.nc2 ./varn_real.bb.nc2 ./put_all_kinds.bb.nc2 ./redef1.bb.nc2 ./iput_all_kinds.bb.nc2 ./tst_version.bb.nc2 ./ncmpi_vars_null_stride.bb.nc3 ./vectors.bb.nc3 ./collective_error.bb.nc3 ./test_varm.bb.nc3 ./alignment_test.bb.nc3 ./flexible.bb.nc3 ./flexible2.bb.nc3 ./flexible_varm.bb.nc3 ./nonblocking.bb.nc3 ./noclobber.bb.nc3 ./record.bb.nc3 ./inq_num_vars.bb.nc3 ./varn_int.bb.nc3 ./modes.bb.nc3 ./one_record.bb.nc3 ./inq_recsize.bb.nc3 ./test_vard.bb.nc3 ./test_vard_rec.bb.nc3 ./test_vard_multiple.bb.nc3 ./varn_contig.bb.nc3 ./ivarn.bb.nc3 ./check_striping.bb.nc3 ./add_var.bb.nc3 ./buftype_free.bb.nc3 ./last_large_var.bb.nc3 ./check_type.bb.nc3 ./test_erange.bb.nc3 ./scalar.bb.nc3 ./null_args.bb.nc3 ./tst_dimsizes.bb.nc3 ./mix_collectives.bb.nc3 ./large_var_cdf5.bb.nc3 ./tst_max_var_dims.bb.nc3 ./tst_info.bb.nc3 ./tst_vars_fill.bb.nc3 ./tst_def_var_fill.bb.nc3 ./test_fillvalue.bb.nc3 ./error_precedence.bb.nc3 ./tst_free_comm.bb.nc3 ./erange_fill.bb.nc3 ./varn_intf.bb.nc3 ./attrf.bb.nc3 ./buftype_freef.bb.nc3 ./put_parameter.bb.nc3 ./test_vardf.bb.nc3 ./inq_num_varsf.bb.nc3 ./inq_recsizef.bb.nc3 ./test_vardf90.bb.nc3 ./varn_real.bb.nc3 ./put_all_kinds.bb.nc3 ./redef1.bb.nc3 ./iput_all_kinds.bb.nc3 ./tst_version.bb.nc3 ./ncmpi_vars_null_stride.bb.nc4 ./vectors.bb.nc4 ./collective_error.bb.nc4 ./test_varm.bb.nc4 ./alignment_test.bb.nc4 ./flexible.bb.nc4 ./flexible2.bb.nc4 ./flexible_varm.bb.nc4 ./nonblocking.bb.nc4 ./noclobber.bb.nc4 ./record.bb.nc4 ./inq_num_vars.bb.nc4 ./varn_int.bb.nc4 ./modes.bb.nc4 ./one_record.bb.nc4 ./inq_recsize.bb.nc4 ./test_vard.bb.nc4 ./test_vard_rec.bb.nc4 ./test_vard_multiple.bb.nc4 ./varn_contig.bb.nc4 ./ivarn.bb.nc4 ./check_striping.bb.nc4 ./add_var.bb.nc4 ./buftype_free.bb.nc4 ./last_large_var.bb.nc4 ./check_type.bb.nc4 ./test_erange.bb.nc4 ./scalar.bb.nc4 ./null_args.bb.nc4 ./tst_dimsizes.bb.nc4 ./mix_collectives.bb.nc4 ./large_var_cdf5.bb.nc4 ./tst_max_var_dims.bb.nc4 ./tst_info.bb.nc4 ./tst_vars_fill.bb.nc4 ./tst_def_var_fill.bb.nc4 ./test_fillvalue.bb.nc4 ./error_precedence.bb.nc4 ./tst_free_comm.bb.nc4 ./erange_fill.bb.nc4 ./varn_intf.bb.nc4 ./attrf.bb.nc4 ./buftype_freef.bb.nc4 ./put_parameter.bb.nc4 ./test_vardf.bb.nc4 ./inq_num_varsf.bb.nc4 ./inq_recsizef.bb.nc4 ./test_vardf90.bb.nc4 ./varn_real.bb.nc4 ./put_all_kinds.bb.nc4 ./redef1.bb.nc4 ./iput_all_kinds.bb.nc4 ./tst_version.bb.nc4 ./ncmpi_vars_null_stride.bb.nc5 ./vectors.bb.nc5 ./collective_error.bb.nc5 ./test_varm.bb.nc5 ./alignment_test.bb.nc5 ./flexible.bb.nc5 ./flexible2.bb.nc5 ./flexible_varm.bb.nc5 ./nonblocking.bb.nc5 ./noclobber.bb.nc5 ./record.bb.nc5 ./inq_num_vars.bb.nc5 ./varn_int.bb.nc5 ./modes.bb.nc5 ./one_record.bb.nc5 ./inq_recsize.bb.nc5 ./test_vard.bb.nc5 ./test_vard_rec.bb.nc5 ./test_vard_multiple.bb.nc5 ./varn_contig.bb.nc5 ./ivarn.bb.nc5 ./check_striping.bb.nc5 ./add_var.bb.nc5 ./buftype_free.bb.nc5 ./last_large_var.bb.nc5 ./check_type.bb.nc5 ./test_erange.bb.nc5 ./scalar.bb.nc5 ./null_args.bb.nc5 ./tst_dimsizes.bb.nc5 ./mix_collectives.bb.nc5 ./large_var_cdf5.bb.nc5 ./tst_max_var_dims.bb.nc5 ./tst_info.bb.nc5 ./tst_vars_fill.bb.nc5 ./tst_def_var_fill.bb.nc5 ./test_fillvalue.bb.nc5 ./error_precedence.bb.nc5 ./tst_free_comm.bb.nc5 ./erange_fill.bb.nc5 ./varn_intf.bb.nc5 ./attrf.bb.nc5 ./buftype_freef.bb.nc5 ./put_parameter.bb.nc5 ./test_vardf.bb.nc5 ./inq_num_varsf.bb.nc5 ./inq_recsizef.bb.nc5 ./test_vardf90.bb.nc5 ./varn_real.bb.nc5 ./put_all_kinds.bb.nc5 ./redef1.bb.nc5 ./iput_all_kinds.bb.nc5 ./tst_version.bb.nc5 rm -rf .libs _libs rm -f *.o test -z "ncmpi_vars_null_stride.log vectors.log collective_error.log test_varm.log alignment_test.log flexible.log flexible2.log flexible_varm.log nonblocking.log noclobber.log record.log inq_num_vars.log varn_int.log modes.log one_record.log inq_recsize.log test_vard.log test_vard_rec.log test_vard_multiple.log varn_contig.log ivarn.log check_striping.log add_var.log buftype_free.log last_large_var.log check_type.log test_erange.log scalar.log null_args.log tst_dimsizes.log mix_collectives.log large_var_cdf5.log tst_max_var_dims.log tst_info.log tst_vars_fill.log tst_def_var_fill.log test_fillvalue.log error_precedence.log tst_free_comm.log erange_fill.log varn_intf.log attrf.log buftype_freef.log put_parameter.log test_vardf.log inq_num_varsf.log inq_recsizef.log test_vardf90.log varn_real.log seq_runs.log" || rm -f ncmpi_vars_null_stride.log vectors.log collective_error.log test_varm.log alignment_test.log flexible.log flexible2.log flexible_varm.log nonblocking.log noclobber.log record.log inq_num_vars.log varn_int.log modes.log one_record.log inq_recsize.log test_vard.log test_vard_rec.log test_vard_multiple.log varn_contig.log ivarn.log check_striping.log add_var.log buftype_free.log last_large_var.log check_type.log test_erange.log scalar.log null_args.log tst_dimsizes.log mix_collectives.log large_var_cdf5.log tst_max_var_dims.log tst_info.log tst_vars_fill.log tst_def_var_fill.log test_fillvalue.log error_precedence.log tst_free_comm.log erange_fill.log varn_intf.log attrf.log buftype_freef.log put_parameter.log test_vardf.log inq_num_varsf.log inq_recsizef.log test_vardf90.log varn_real.log seq_runs.log test -z "ncmpi_vars_null_stride.trs vectors.trs collective_error.trs test_varm.trs alignment_test.trs flexible.trs flexible2.trs flexible_varm.trs nonblocking.trs noclobber.trs record.trs inq_num_vars.trs varn_int.trs modes.trs one_record.trs inq_recsize.trs test_vard.trs test_vard_rec.trs test_vard_multiple.trs varn_contig.trs ivarn.trs check_striping.trs add_var.trs buftype_free.trs last_large_var.trs check_type.trs test_erange.trs scalar.trs null_args.trs tst_dimsizes.trs mix_collectives.trs large_var_cdf5.trs tst_max_var_dims.trs tst_info.trs tst_vars_fill.trs tst_def_var_fill.trs test_fillvalue.trs error_precedence.trs tst_free_comm.trs erange_fill.trs varn_intf.trs attrf.trs buftype_freef.trs put_parameter.trs test_vardf.trs inq_num_varsf.trs inq_recsizef.trs test_vardf90.trs varn_real.trs seq_runs.trs" || rm -f ncmpi_vars_null_stride.trs vectors.trs collective_error.trs test_varm.trs alignment_test.trs flexible.trs flexible2.trs flexible_varm.trs nonblocking.trs noclobber.trs record.trs inq_num_vars.trs varn_int.trs modes.trs one_record.trs inq_recsize.trs test_vard.trs test_vard_rec.trs test_vard_multiple.trs varn_contig.trs ivarn.trs check_striping.trs add_var.trs buftype_free.trs last_large_var.trs check_type.trs test_erange.trs scalar.trs null_args.trs tst_dimsizes.trs mix_collectives.trs large_var_cdf5.trs tst_max_var_dims.trs tst_info.trs tst_vars_fill.trs tst_def_var_fill.trs test_fillvalue.trs error_precedence.trs tst_free_comm.trs erange_fill.trs varn_intf.trs attrf.trs buftype_freef.trs put_parameter.trs test_vardf.trs inq_num_varsf.trs inq_recsizef.trs test_vardf90.trs varn_real.trs seq_runs.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/testcases' Making clean in nonblocking make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nonblocking' rm -f test_bput interleaved i_varn_int64 flexible_bput wait_after_indep req_all i_varn_indef large_num_reqs bput_varn column_wise mcoll_testf77 test_bputf77 mcoll_testf test_bputf mcoll_perf test -z "bput_varn.c column_wise.c core core.* *.gcda *.gcno *.gcov gmon.out ./testfile*.nc ./test_bput.nc ./interleaved.nc ./i_varn_int64.nc ./flexible_bput.nc ./wait_after_indep.nc ./req_all.nc ./i_varn_indef.nc ./large_num_reqs.nc ./bput_varn.nc ./column_wise.nc ./mcoll_testf77.nc ./test_bputf77.nc ./mcoll_testf.nc ./test_bputf.nc ./test_bput.bb.nc ./interleaved.bb.nc ./i_varn_int64.bb.nc ./flexible_bput.bb.nc ./wait_after_indep.bb.nc ./req_all.bb.nc ./i_varn_indef.bb.nc ./large_num_reqs.bb.nc ./bput_varn.bb.nc ./column_wise.bb.nc ./mcoll_testf77.bb.nc ./test_bputf77.bb.nc ./mcoll_testf.bb.nc ./test_bputf.bb.nc ./mcoll_perf.nc.* ./mcoll_perf.bb.nc.*" || rm -f bput_varn.c column_wise.c core core.* *.gcda *.gcno *.gcov gmon.out ./testfile*.nc ./test_bput.nc ./interleaved.nc ./i_varn_int64.nc ./flexible_bput.nc ./wait_after_indep.nc ./req_all.nc ./i_varn_indef.nc ./large_num_reqs.nc ./bput_varn.nc ./column_wise.nc ./mcoll_testf77.nc ./test_bputf77.nc ./mcoll_testf.nc ./test_bputf.nc ./test_bput.bb.nc ./interleaved.bb.nc ./i_varn_int64.bb.nc ./flexible_bput.bb.nc ./wait_after_indep.bb.nc ./req_all.bb.nc ./i_varn_indef.bb.nc ./large_num_reqs.bb.nc ./bput_varn.bb.nc ./column_wise.bb.nc ./mcoll_testf77.bb.nc ./test_bputf77.bb.nc ./mcoll_testf.bb.nc ./test_bputf.bb.nc ./mcoll_perf.nc.* ./mcoll_perf.bb.nc.* rm -rf .libs _libs rm -f *.o test -z "test_bput.log interleaved.log i_varn_int64.log flexible_bput.log wait_after_indep.log req_all.log i_varn_indef.log large_num_reqs.log bput_varn.log column_wise.log mcoll_testf77.log test_bputf77.log mcoll_testf.log test_bputf.log seq_runs.log" || rm -f test_bput.log interleaved.log i_varn_int64.log flexible_bput.log wait_after_indep.log req_all.log i_varn_indef.log large_num_reqs.log bput_varn.log column_wise.log mcoll_testf77.log test_bputf77.log mcoll_testf.log test_bputf.log seq_runs.log test -z "test_bput.trs interleaved.trs i_varn_int64.trs flexible_bput.trs wait_after_indep.trs req_all.trs i_varn_indef.trs large_num_reqs.trs bput_varn.trs column_wise.trs mcoll_testf77.trs test_bputf77.trs mcoll_testf.trs test_bputf.trs seq_runs.trs" || rm -f test_bput.trs interleaved.trs i_varn_int64.trs flexible_bput.trs wait_after_indep.trs req_all.trs i_varn_indef.trs large_num_reqs.trs bput_varn.trs column_wise.trs mcoll_testf77.trs test_bputf77.trs mcoll_testf.trs test_bputf.trs seq_runs.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nonblocking' Making clean in CXX make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/CXX' rm -f nctst test_classic test -z "./nctst.nc ./test_classic.nc ./nctst.bb.nc ./test_classic.bb.nc core core.* *.gcda *.gcno *.gcov gmon.out a.out" || rm -f ./nctst.nc ./test_classic.nc ./nctst.bb.nc ./test_classic.bb.nc core core.* *.gcda *.gcno *.gcov gmon.out a.out rm -rf .libs _libs rm -f *.o test -z "nctst.log test_classic.log" || rm -f nctst.log test_classic.log test -z "nctst.trs test_classic.trs" || rm -f nctst.trs test_classic.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/CXX' Making clean in nf_test make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nf_test' rm -f nf_test test -z "test_get.F test_put.F test_iget.F test_iput.F ./scratch.nc ./test.nc ./tooth-fairy.nc core core.* *.gcda *.gcno *.gcov gmon.out" || rm -f test_get.F test_put.F test_iget.F test_iput.F ./scratch.nc ./test.nc ./tooth-fairy.nc core core.* *.gcda *.gcno *.gcov gmon.out rm -rf .libs _libs rm -f *.o test -z "seq_runs.log" || rm -f seq_runs.log test -z "seq_runs.trs" || rm -f seq_runs.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nf_test' Making clean in nf90_test make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nf90_test' rm -f nf90_test test -z "test_get.F90 test_put.F90 test_iget.F90 test_iput.F90 ./scratch.nc ./test.nc ./tooth-fairy.nc core core.* *.gcda *.gcno *.gcov gmon.out" || rm -f test_get.F90 test_put.F90 test_iget.F90 test_iput.F90 ./scratch.nc ./test.nc ./tooth-fairy.nc core core.* *.gcda *.gcno *.gcov gmon.out rm -rf .libs _libs rm -f *.o test -z "seq_runs.log" || rm -f seq_runs.log test -z "seq_runs.trs" || rm -f seq_runs.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nf90_test' Making clean in F90 make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/F90' rm -f tst_f90 f90tst_vars tst_types2 tst_f90_cdf5 f90tst_vars2 f90tst_vars3 f90tst_vars4 test_intent test_attr_int64 test_fill f90tst_parallel f90tst_parallel2 f90tst_parallel3 f90tst_parallel4 tst_io test -z "*.mod core core.* *.gcda *.gcno *.gcov gmon.out ./tst_io1.nc ./tst_io1.nc0 ./testfile.nc ./tst_f90.nc ./f90tst_vars.nc ./tst_types2.nc ./tst_f90_cdf5.nc ./f90tst_vars2.nc ./f90tst_vars3.nc ./f90tst_vars4.nc ./test_intent.nc ./test_attr_int64.nc ./test_fill.nc ./f90tst_parallel.nc ./f90tst_parallel2.nc ./f90tst_parallel3.nc ./f90tst_parallel4.nc ./tst_io.nc ./tst_f90.bb.nc ./f90tst_vars.bb.nc ./tst_types2.bb.nc ./tst_f90_cdf5.bb.nc ./f90tst_vars2.bb.nc ./f90tst_vars3.bb.nc ./f90tst_vars4.bb.nc ./test_intent.bb.nc ./test_attr_int64.bb.nc ./test_fill.bb.nc ./f90tst_parallel.bb.nc ./f90tst_parallel2.bb.nc ./f90tst_parallel3.bb.nc ./f90tst_parallel4.bb.nc ./tst_io.bb.nc" || rm -f *.mod core core.* *.gcda *.gcno *.gcov gmon.out ./tst_io1.nc ./tst_io1.nc0 ./testfile.nc ./tst_f90.nc ./f90tst_vars.nc ./tst_types2.nc ./tst_f90_cdf5.nc ./f90tst_vars2.nc ./f90tst_vars3.nc ./f90tst_vars4.nc ./test_intent.nc ./test_attr_int64.nc ./test_fill.nc ./f90tst_parallel.nc ./f90tst_parallel2.nc ./f90tst_parallel3.nc ./f90tst_parallel4.nc ./tst_io.nc ./tst_f90.bb.nc ./f90tst_vars.bb.nc ./tst_types2.bb.nc ./tst_f90_cdf5.bb.nc ./f90tst_vars2.bb.nc ./f90tst_vars3.bb.nc ./f90tst_vars4.bb.nc ./test_intent.bb.nc ./test_attr_int64.bb.nc ./test_fill.bb.nc ./f90tst_parallel.bb.nc ./f90tst_parallel2.bb.nc ./f90tst_parallel3.bb.nc ./f90tst_parallel4.bb.nc ./tst_io.bb.nc rm -rf .libs _libs rm -f *.o test -z "tst_f90.log f90tst_vars.log tst_types2.log tst_f90_cdf5.log f90tst_vars2.log f90tst_vars3.log f90tst_vars4.log test_intent.log test_attr_int64.log test_fill.log seq_runs.log" || rm -f tst_f90.log f90tst_vars.log tst_types2.log tst_f90_cdf5.log f90tst_vars2.log f90tst_vars3.log f90tst_vars4.log test_intent.log test_attr_int64.log test_fill.log seq_runs.log test -z "tst_f90.trs f90tst_vars.trs tst_types2.trs tst_f90_cdf5.trs f90tst_vars2.trs f90tst_vars3.trs f90tst_vars4.trs test_intent.trs test_attr_int64.trs test_fill.trs seq_runs.trs" || rm -f tst_f90.trs f90tst_vars.trs tst_types2.trs tst_f90_cdf5.trs f90tst_vars2.trs f90tst_vars3.trs f90tst_vars4.trs test_intent.trs test_attr_int64.trs test_fill.trs seq_runs.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/F90' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test' rm -rf .libs _libs rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test' make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1' rm -rf .libs _libs rm -f *.lo make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1' Running Executable WITHOUT threads to time it out Executing: /usr/bin/make -j40 -l96.0 stdout: Making all in src make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src' Making all in include make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/include' /usr/bin/make all-am make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/include' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/include' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/include' Making all in dispatchers make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/dispatchers' m4 -DPNETCDF -I../../m4 attr_getput.m4 >attr_getput.c m4 -DPNETCDF -I../../m4 var_getput.m4 >var_getput.c /usr/bin/make all-am make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/dispatchers' CC lib_version.lo CC dimension.lo CC file.lo CC variable.lo CC attribute.lo CC error_codes.lo CC attr_getput.lo CC var_getput.lo CCLD libdispatchers.la make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/dispatchers' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/dispatchers' Making all in drivers make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers' Making all in include make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/include' m4 -DPNETCDF -I../../../m4 ncx_h.m4 >ncx.h /usr/bin/make all-am make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/include' make[4]: Nothing to be done for 'all-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/include' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/include' Making all in common make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/common' m4 -DPNETCDF -I../../../m4 -DERANGE_FILL ncx.m4 >ncx.c m4 -DPNETCDF -I../../../m4 -DERANGE_FILL convert_swap.m4 >convert_swap.c /usr/bin/make all-am make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/common' CC utf8proc.lo CC mem_alloc.lo CC dtype_decode.lo CC create_imaptype.lo CC error_mpi2nc.lo CC check_name.lo CC pack_unpack.lo CC utils.lo CC error_posix2nc.lo CC hash_map.lo CC ncx.lo CC convert_swap.lo CCLD libcommon.la make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/common' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/common' Making all in ncmpio make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/ncmpio' m4 -DPNETCDF -I../../../m4 -DERANGE_FILL ncmpio_getput.m4 >ncmpio_getput.c m4 -DPNETCDF -I../../../m4 -DERANGE_FILL ncmpio_i_getput.m4 >ncmpio_i_getput.c m4 -DPNETCDF -I../../../m4 -DERANGE_FILL ncmpio_varn.m4 >ncmpio_varn.c m4 -DPNETCDF -I../../../m4 -DERANGE_FILL ncmpio_i_varn.m4 >ncmpio_i_varn.c m4 -DPNETCDF -I../../../m4 -DERANGE_FILL ncmpio_attr.m4 >ncmpio_attr.c /usr/bin/make all-am make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/ncmpio' CC ncmpio_driver.lo CC ncmpio_create.lo CC ncmpio_open.lo CC ncmpio_enddef.lo CC ncmpio_close.lo CC ncmpio_sync.lo CC ncmpio_file_misc.lo CC ncmpio_header_get.lo CC ncmpio_header_put.lo CC ncmpio_dim.lo CC ncmpio_var.lo CC ncmpio_bput.lo CC ncmpio_filetype.lo CC ncmpio_wait.lo CC ncmpio_vard.lo CC ncmpio_fill.lo CC ncmpio_util.lo CC ncmpio_hash_func.lo CC ncmpio_file_io.lo CC ncmpio_getput.lo CC ncmpio_i_getput.lo CC ncmpio_varn.lo CC ncmpio_attr.lo CC ncmpio_i_varn.lo CCLD libncmpio.la make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/ncmpio' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/ncmpio' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers' Making all in binding make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding' Making all in cxx make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/cxx' cat ./pnetcdf.in >pnetcdf set -e; for i in ncmpi_notyet.h ncmpiCheck.h ncmpiType.h ncmpiAtt.h ncmpiEnumType.h ncmpiGroupAtt.h ncmpiGroup.h ncmpiByte.h ncmpiChar.h ncmpiCompoundType.h ncmpiDouble.h ncmpiFloat.h ncmpiInt.h ncmpiInt64.h ncmpiOpaqueType.h ncmpiShort.h ncmpiUbyte.h ncmpiUint.h ncmpiUint64.h ncmpiUshort.h ncmpiException.h ncmpiDim.h ncmpiFile.h ncmpiVarAtt.h ncmpiVar.h ncmpiVlenType.h; do ( \ /bin/sed -e '/#ifndef/d' -e '/#define/d' -e '/#endif/d' -e '/#include/d' ./$i >> pnetcdf ; \ ) ; done /usr/bin/make all-am make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/cxx' CXX ncmpi_notyet.lo CXX ncmpiCheck.lo CXX ncmpiType.lo CXX ncmpiAtt.lo CXX ncmpiEnumType.lo CXX ncmpiGroup.lo CXX ncmpiByte.lo CXX ncmpiGroupAtt.lo CXX ncmpiChar.lo CXX ncmpiCompoundType.lo CXX ncmpiDouble.lo CXX ncmpiFloat.lo CXX ncmpiInt64.lo CXX ncmpiOpaqueType.lo CXX ncmpiUbyte.lo CXX ncmpiInt.lo CXX ncmpiUint.lo CXX ncmpiShort.lo CXX ncmpiUint64.lo CXX ncmpiDim.lo CXX ncmpiUshort.lo CXX ncmpiException.lo CXX ncmpiVarAtt.lo CXX ncmpiFile.lo CXX ncmpiVar.lo CXX ncmpiVlenType.lo CXXLD libcxx.la make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/cxx' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/cxx' Making all in f77 make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/f77' rm -f mpifnetcdf.h issyserrf.c xstrerrorf.c xstrerrnof.c xinq_libversf.c allf.c F77 strerrorf.lo F77 strerrnof.lo F77 inq_libversf.lo ./buildiface -infile=../../../src/include/pnetcdf.h -deffile=./defs > allf.c CC issyserrf.lo CC xstrerrorf.lo CC xstrerrnof.lo CC xinq_libversf.lo CC allf.lo F77LD libf77.la make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/f77' Making all in f90 make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/f90' m4 -DPNETCDF -DINTENTV=INOUT getput_text.m4 >getput_text.fh m4 -DPNETCDF -DINTENTV=INOUT getput_var.m4 >getput_var.fh m4 -DPNETCDF -DINTENTV=INOUT getput_varn.m4 >getput_varn.fh m4 -DPNETCDF -DINTENTV=INOUT getput_vard.m4 >getput_vard.fh /usr/bin/make all-am make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/f90' FC pnetcdf.lo FCLD libf90.la make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/f90' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/f90' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding' Making all in packaging make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/packaging' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/packaging' Making all in . make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src' Making all in libs make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/libs' GEN libpnetcdf.la make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/libs' Making all in utils make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils' Making all in ncmpigen make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncmpigen' CC main.o CC load.o CC escapes.o CC getfill.o CC init.o CC genlib.o CC ncmpigentab.o CCLD ncmpigen make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncmpigen' Making all in ncmpidump make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncmpidump' CC ncmpidump.o CC vardata.o CC dumplib.o CCLD ncmpidump make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncmpidump' Making all in ncmpidiff make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncmpidiff' /usr/bin/gcc -I../../../src/utils/ncvalidator -o cdfdiff cdfdiff.c CC ncmpidiff.o CCLD ncmpidiff make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncmpidiff' Making all in ncvalidator make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncvalidator' /usr/bin/gcc -o ncvalidator ncvalidator.c make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncvalidator' Making all in pnetcdf_version make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/pnetcdf_version' /usr/bin/gcc -DMPICC="\"/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc\"" -DCFLAGS="\"-fstack-protector -O3\"" -DCONFIGURE_ARGS_CLEAN="\"--prefix=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt MAKE=/usr/bin/make --libdir=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib CC=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc CFLAGS=-fstack-protector -O3 AR=/usr/bin/ar ARFLAGS=cr CXX=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx CXXFLAGS=-fstack-protector -O3 F90=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 F90FLAGS=-ffree-line-length-0 -O3 FFLAGS=-ffree-line-length-0 -O3 FC=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 F77=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 FCFLAGS=-ffree-line-length-0 -O3 --enable-shared LIBS=-Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lstdc++ -ldl -lmpifort -lmpi -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath\"" -DPNETCDF_VERSION="\"1.12.1\"" -DMPICXX="\"/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx\"" -DCXXFLAGS="\"-fstack-protector -O3\"" -DMPIF77="\"/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90\"" -DFFLAGS="\"-ffree-line-length-0 -O3\"" -DMPIF90="\"/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90\"" -DFCFLAGS="\"-ffree-line-length-0 -O3\"" -o pnetcdf_version pnetcdf_version.c make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/pnetcdf_version' Making all in ncoffsets make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncoffsets' /usr/bin/gcc -o ncoffsets ncoffsets.c make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncoffsets' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src' Making all in man make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/man' m4 -DPNETCDF -DAPI=C -DPNETCDF_VERSION=1.12.1 pnetcdf.m4 > pnetcdf.3 || rm -f pnetcdf.3 m4 -DPNETCDF -DAPI=F -DPNETCDF_VERSION=1.12.1 pnetcdf.m4 > pnetcdf_f77.3 || rm -f pnetcdf_f77.3 m4 -DPNETCDF -DPNETCDF_VERSION=1.12.1 pnetcdf_f90.m4 > pnetcdf_f90.3 || rm -f pnetcdf_f90.3 make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/man' Making all in examples make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples' Making all in C make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/C' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/C' Making all in tutorial make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/tutorial' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/tutorial' Making all in CXX make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/CXX' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/CXX' Making all in F77 make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/F77' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/F77' Making all in F90 make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/F90' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/F90' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples' Making all in benchmarks make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/benchmarks' Making all in C make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/benchmarks/C' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/benchmarks/C' Making all in FLASH-IO make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/benchmarks/FLASH-IO' PPFC get_mfluid_property.o PPFC flash_release.o PPFC flash_benchmark_io.o PPFC checkpoint_ncmpi_parallel.o PPFC plotfile_ncmpi_parallel.o FCLD flash_benchmark_io make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/benchmarks/FLASH-IO' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/benchmarks' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/benchmarks' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/benchmarks' Making all in test make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test' Making all in common make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/common' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/common' Making all in C make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/C' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/C' Making all in fandc make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/fandc' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/fandc' Making all in nc_test make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nc_test' m4 -DPNETCDF -I../../m4 tests.h.m4 > tests.h /usr/bin/make all-am make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nc_test' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nc_test' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nc_test' Making all in cdf_format make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/cdf_format' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/cdf_format' Making all in header make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/header' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/header' Making all in testcases make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/testcases' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/testcases' Making all in nonblocking make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nonblocking' m4 -DPNETCDF -I../../m4 bput_varn.m4 >bput_varn.c m4 -DPNETCDF -I../../m4 column_wise.m4 >column_wise.c /usr/bin/make all-am make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nonblocking' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nonblocking' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nonblocking' Making all in CXX make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/CXX' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/CXX' Making all in nf_test make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nf_test' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nf_test' Making all in nf90_test make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nf90_test' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nf90_test' Making all in F90 make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/F90' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/F90' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test' make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1' make[1]: Nothing to be done for 'all-am'. make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1' =============================================================================== Running make install on PNETCDF; this may take several minutes =============================================================================== Running Executable WITHOUT threads to time it out Executing: /usr/bin/make install stdout: Making install in src make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src' Making install in include make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/include' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/include' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include' /usr/bin/install -c -m 644 pnetcdf.h '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/include' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/include' Making install in dispatchers make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/dispatchers' /usr/bin/make install-am make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/dispatchers' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/dispatchers' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/dispatchers' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/dispatchers' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/dispatchers' Making install in drivers make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers' Making install in include make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/include' /usr/bin/make install-am make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/include' make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/include' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/include' make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/include' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/include' Making install in common make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/common' /usr/bin/make install-am make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/common' make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/common' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/common' make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/common' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/common' Making install in ncmpio make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/ncmpio' /usr/bin/make install-am make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/ncmpio' make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/ncmpio' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/ncmpio' make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/ncmpio' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/ncmpio' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers' Making install in binding make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding' Making install in cxx make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/cxx' /usr/bin/make install-am make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/cxx' make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/cxx' make[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include' /usr/bin/install -c -m 644 pnetcdf '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include' make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/cxx' make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/cxx' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/cxx' Making install in f77 make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/f77' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/f77' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include' /usr/bin/install -c -m 644 pnetcdf.inc '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include' make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/f77' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/f77' Making install in f90 make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/f90' /usr/bin/make install-am make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/f90' make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/f90' make[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include' /usr/bin/install -c -m 644 pnetcdf.mod '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include' make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/f90' make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/f90' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/f90' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding' Making install in packaging make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/packaging' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/packaging' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/pkgconfig' /usr/bin/install -c -m 644 pnetcdf.pc '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/pkgconfig' /usr/bin/make install-data-hook make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/packaging' /bin/sed -i'' -e 's|INSTALL_PREFIX|/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt|g ; s|INSTALL_EXEC_PREFIX|/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt|g' /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/pkgconfig/pnetcdf.pc make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/packaging' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/packaging' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/packaging' Making install in . make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src' Making install in libs make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/libs' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/libs' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib' /bin/bash ../../libtool --mode=install /usr/bin/install -c libpnetcdf.la '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib' libtool: install: /usr/bin/install -c .libs/libpnetcdf.so.4.0.1 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libpnetcdf.so.4.0.1 libtool: install: (cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib && { ln -s -f libpnetcdf.so.4.0.1 libpnetcdf.so.4 || { rm -f libpnetcdf.so.4 && ln -s libpnetcdf.so.4.0.1 libpnetcdf.so.4; }; }) libtool: install: (cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib && { ln -s -f libpnetcdf.so.4.0.1 libpnetcdf.so || { rm -f libpnetcdf.so && ln -s libpnetcdf.so.4.0.1 libpnetcdf.so; }; }) libtool: install: /usr/bin/install -c .libs/libpnetcdf.lai /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libpnetcdf.la libtool: install: /usr/bin/install -c .libs/libpnetcdf.a /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libpnetcdf.a libtool: install: chmod 644 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libpnetcdf.a libtool: install: ranlib /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libpnetcdf.a libtool: finish: PATH="/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin:/home/dsu/Soft/PETSc/petsc-3.10.5/linux-gnu-opt/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/home/dsu/Soft/Paraview/ParaView-5.5.0/bin:/home/dsu/Soft/VisIt/visit2_13_0.linux-x86_64/bin:/home/dsu/Soft/Intel/parallel_studio_2019/bin:/home/dsu/Soft/Paraview/ParaView-5.5.0/bin:/home/dsu/Soft/VisIt/visit2_13_0.linux-x86_64/bin:/home/dsu/Soft/Intel/parallel_studio_2019/bin:/sbin" ldconfig -n /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the '-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the 'LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the 'LD_RUN_PATH' environment variable during linking - use the '-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to '/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/libs' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/libs' Making install in utils make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils' Making install in ncmpigen make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncmpigen' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncmpigen' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' /bin/bash ../../../libtool --mode=install /usr/bin/install -c ncmpigen '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' libtool: install: /usr/bin/install -c .libs/ncmpigen /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/ncmpigen /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man1' /usr/bin/install -c -m 644 ncmpigen.1 '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man1' make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncmpigen' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncmpigen' Making install in ncmpidump make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncmpidump' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncmpidump' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' /bin/bash ../../../libtool --mode=install /usr/bin/install -c ncmpidump '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' libtool: install: /usr/bin/install -c .libs/ncmpidump /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/ncmpidump /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man1' /usr/bin/install -c -m 644 ncmpidump.1 '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man1' make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncmpidump' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncmpidump' Making install in ncmpidiff make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncmpidiff' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncmpidiff' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' /bin/bash ../../../libtool --mode=install /usr/bin/install -c ncmpidiff cdfdiff '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' libtool: install: /usr/bin/install -c .libs/ncmpidiff /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/ncmpidiff libtool: install: /usr/bin/install -c cdfdiff /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/cdfdiff /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man1' /usr/bin/install -c -m 644 ncmpidiff.1 cdfdiff.1 '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man1' make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncmpidiff' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncmpidiff' Making install in ncvalidator make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncvalidator' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncvalidator' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' /bin/bash ../../../libtool --mode=install /usr/bin/install -c ncvalidator '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' libtool: install: /usr/bin/install -c ncvalidator /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/ncvalidator /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man1' /usr/bin/install -c -m 644 ncvalidator.1 '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man1' make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncvalidator' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncvalidator' Making install in pnetcdf_version make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/pnetcdf_version' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/pnetcdf_version' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' /bin/bash ../../../libtool --mode=install /usr/bin/install -c pnetcdf_version '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' libtool: install: /usr/bin/install -c pnetcdf_version /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/pnetcdf_version /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man1' /usr/bin/install -c -m 644 pnetcdf_version.1 '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man1' make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/pnetcdf_version' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/pnetcdf_version' Making install in ncoffsets make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncoffsets' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncoffsets' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' /bin/bash ../../../libtool --mode=install /usr/bin/install -c ncoffsets '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' libtool: install: /usr/bin/install -c ncoffsets /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/ncoffsets /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man1' /usr/bin/install -c -m 644 ncoffsets.1 '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man1' make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncoffsets' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncoffsets' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' /usr/bin/install -c pnetcdf-config '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' /usr/bin/make install-exec-hook make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils' /bin/sed -i'' -e 's|INSTALL_PREFIX|/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt|g ; s|INSTALL_EXEC_PREFIX|/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt|g' /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/pnetcdf-config chmod +x /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/pnetcdf-config make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils' make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src' Making install in man make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/man' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/man' make[2]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3' /usr/bin/install -c -m 644 pnetcdf.3 pnetcdf_f77.3 pnetcdf_f90.3 '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/man' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/man' Making install in examples make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples' Making install in C make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/C' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/C' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/C' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/C' Making install in tutorial make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/tutorial' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/tutorial' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/tutorial' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/tutorial' Making install in CXX make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/CXX' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/CXX' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/CXX' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/CXX' Making install in F77 make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/F77' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/F77' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/F77' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/F77' Making install in F90 make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/F90' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/F90' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/F90' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/F90' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples' Making install in benchmarks make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/benchmarks' Making install in C make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/benchmarks/C' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/benchmarks/C' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/benchmarks/C' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/benchmarks/C' Making install in FLASH-IO make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/benchmarks/FLASH-IO' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/benchmarks/FLASH-IO' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/benchmarks/FLASH-IO' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/benchmarks/FLASH-IO' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/benchmarks' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/benchmarks' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/benchmarks' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/benchmarks' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/benchmarks' Making install in test make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test' Making install in common make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/common' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/common' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/common' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/common' Making install in C make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/C' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/C' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/C' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/C' Making install in fandc make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/fandc' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/fandc' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/fandc' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/fandc' Making install in nc_test make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nc_test' /usr/bin/make install-am make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nc_test' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nc_test' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nc_test' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nc_test' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nc_test' Making install in cdf_format make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/cdf_format' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/cdf_format' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/cdf_format' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/cdf_format' Making install in header make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/header' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/header' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/header' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/header' Making install in testcases make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/testcases' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/testcases' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/testcases' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/testcases' Making install in nonblocking make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nonblocking' /usr/bin/make install-am make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nonblocking' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nonblocking' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nonblocking' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nonblocking' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nonblocking' Making install in CXX make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/CXX' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/CXX' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/CXX' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/CXX' Making install in nf_test make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nf_test' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nf_test' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nf_test' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nf_test' Making install in nf90_test make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nf90_test' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nf90_test' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nf90_test' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nf90_test' Making install in F90 make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/F90' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/F90' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/F90' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/F90' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test' make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1' make[2]: Nothing to be done for 'install-exec-am'. /usr/bin/make install-data-hook make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1' +----------------------------------------------------------------------------+ | | PnetCDF has been successfully installed under | /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt | | * PnetCDF header files have been installed in | /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include | * PnetCDF library files have been installed in | /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib | * PnetCDF utility programs have been installed in | /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin | * PnetCDF man pages have been installed in | /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man | | To compile your PnetCDF programs, please add the following to the command | line, so the compiler can find the PnetCDF header files: | -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include | | Add the following line to link your program to PnetCDF library: | -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lpnetcdf | | Add the following to your run-time environment variable LD_LIBRARY_PATH, | when linking your executable with the PnetCDF shared libraries. | /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib | | | PnetCDF is jointly developed by a team at Northwestern University and | Argonne National Laboratory. | | Visit PnetCDF project web site for more information | https://parallel-netcdf.github.io | +----------------------------------------------------------------------------+ make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1' ********Output of running make on PNETCDF follows ******* checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether /usr/bin/make sets $(MAKE)... yes checking whether /usr/bin/make supports nested variables... yes checking whether /usr/bin/make supports nested variables... (cached) yes checking whether to enable maintainer-specific portions of Makefiles... yes checking for rm... yes checking for gawk... (cached) gawk checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for a sed that does not truncate output... /bin/sed checking for sed handling option -i ... /bin/sed -i'' checking whether /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc exists and is executable... yes checking for gcc... /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc accepts -g... yes checking for /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc option to accept ISO C89... none needed checking whether /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc understands -c and -o together... yes checking for style of include used by /usr/bin/make... GNU checking dependency style of /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc... gcc3 checking how to run the C preprocessor... /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -E checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for MPI_Comm_rank... yes checking for MPI_File_open... yes checking MPI C compiler base... GCC checking MPI Standard version implemented... 3.1 checking whether MPICH_VERSION is declared... yes checking whether MPICH2_VERSION is declared... no checking whether OMPI_MAJOR_VERSION is declared... no checking whether MVAPICH2_VERSION is declared... no checking MPI vendor... MPICH 3.3.2 checking whether /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc is a wrapper of a C++ compiler... no checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking the archiver (/usr/bin/ar) interface... ar checking how to print strings... printf checking for a sed that does not truncate output... (cached) /bin/sed checking for fgrep... /bin/grep -F checking for ld used by /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc supports -fno-rtti -fno-exceptions... no checking for /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc option to produce PIC... -fPIC -DPIC checking if /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc PIC flag -fPIC -DPIC works... yes checking if /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc static flag -static works... no checking if /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc supports -c -o file.o... yes checking if /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc supports -c -o file.o... (cached) yes checking whether the /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx exists and is executable... yes checking whether we are using the GNU C++ compiler... yes checking whether /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx accepts -g... yes checking dependency style of /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx... gcc3 checking how to run the C++ preprocessor... /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx -E checking for ld used by /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx option to produce PIC... -fPIC -DPIC checking if /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx PIC flag -fPIC -DPIC works... yes checking if /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx static flag -static works... no checking if /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx supports -c -o file.o... yes checking if /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx supports -c -o file.o... (cached) yes checking whether the /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for MPI_File_close... yes checking whether MPI C++ compiler redefines SEEK_SET ... no checking whether /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 exists and is executable... yes checking whether /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 exists and is executable... yes checking whether we are using the GNU Fortran 77 compiler... yes checking whether /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 option to produce PIC... -fPIC checking if /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 PIC flag -fPIC works... yes checking if /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 static flag -static works... no checking if /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 supports -c -o file.o... yes checking if /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 supports -c -o file.o... (cached) yes checking whether the /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking how to get verbose linking output from /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90... -v checking for Fortran 77 libraries of /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90... -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/5/../../.. -lstdc++ -ldl -lmpifort -lmpi -lgfortran -lm -lquadmath checking whether /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 is a valid MPI compiler... yes checking whether we are using the GNU Fortran compiler... yes checking whether /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 option to produce PIC... -fPIC checking if /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 PIC flag -fPIC works... yes checking if /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 static flag -static works... no checking if /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 supports -c -o file.o... yes checking if /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 supports -c -o file.o... (cached) yes checking whether the /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking how to get verbose linking output from /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90... -v checking for Fortran libraries of /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90... -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/5/../../.. -lstdc++ -ldl -lmpifort -lmpi -lgfortran -lm -lquadmath checking whether mpi.mod is available... yes checking whether /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 is a valid MPI compiler... yes checking for Fortran flag needed to accept free-form source... -ffree-form checking for Fortran flag to compile preprocessed .F files... none checking for Fortran flag to compile preprocessed .F90 files... none checking for Fortran flag to compile preprocessed .F files... (cached) none checking how to define symbols for preprocessed Fortran... -D checking for Fortran flag to compile .f files... none checking for Fortran flag to compile .F files... none checking for Fortran flag to compile .f90 files... none checking for Fortran flag to compile .F90 files... none checking for Fortran flag needed to accept fixed-form source... -ffixed-form checking for dummy main to link with Fortran libraries... none checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore checking for C-equivalent to Fortran routine "SUB_A"... sub_a_ checking if MPI Fortran 90 compiler is NAG Fortran... no checking Fortran compiler treating constant modifier... 8 checking Fortran 90 module extension... mod checking Fortran 90 module inclusion flag... -I checking Fortran 90 module extension... (cached) mod checking whether Fortran 90 compiler capitalizes .mod filenames... no configure: creating ./config.lt config.lt: creating libtool checking whether MPI library is built with shared library support... yes checking for m4... m4 checking m4 additional flags... none needed checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for inline... inline checking for IEEE floating point format... yes checking whether strdup is declared... yes checking for strdup... yes checking whether strerror is declared... yes checking for strerror... yes checking whether access is declared... yes checking for access... yes checking whether unlink is declared... yes checking for unlink... yes checking whether strcasecmp is declared... yes checking for strcasecmp... yes checking search.h usability... yes checking search.h presence... yes checking for search.h... yes checking whether tsearch is declared... yes checking for tsearch... yes checking whether tdelete is declared... yes checking for tdelete... yes checking size of MPI_Offset... 8 checking size of MPI_Aint... 8 checking whether MPI_COMBINER_HVECTOR_INTEGER is defined... yes checking whether MPI_COMBINER_HINDEXED_INTEGER is defined... yes checking whether MPI_COMBINER_STRUCT_INTEGER is defined... yes checking whether char is unsigned... no checking whether byte ordering is bigendian... no checking for size_t... yes checking for off_t... yes checking for ssize_t... yes checking for ptrdiff_t... yes checking for schar... no checking for uchar... no checking for ushort... yes checking for uint... yes checking for longlong... no checking for ulonglong... no checking for int64... no checking for uint64... no checking size of size_t... 8 checking size of off_t... 8 checking size of char... 1 checking size of signed char... 1 checking size of unsigned char... 1 checking size of short... 2 checking size of unsigned short int... 2 checking size of unsigned short... 2 checking size of int... 4 checking size of unsigned int... 4 checking size of long... 8 checking size of float... 4 checking size of double... 8 checking size of long long... 8 checking size of unsigned long long... 8 checking size of ptrdiff_t... 8 checking size of ushort... 2 checking size of uint... 4 checking size of MPI_Fint... 4 checking for /usr/bin/nm... /usr/bin/nm -B checking nm flags... checking for C-equivalent to Fortran routine "SUB"... sub_ checking for Fortran "integer*1"... yes checking for Fortran "integer*2"... yes checking for Fortran "integer*8"... yes checking if Fortran "integer*1" is ... "signed char" in C checking if Fortran "integer*2" is ... "short" in C checking if Fortran "integer*8" is ... "int" in C checking if Fortran "integer" is ... "int" in C checking if Fortran "real" is ... "float" in C checking if Fortran "doubleprecision" is ... "double" in C checking for Fortran 77 GNU intrinsic INT... yes checking for Fortran 77 intrinsic INT1... no checking for Fortran 77 intrinsic INT2... yes checking for Fortran 77 intrinsic INT8... yes checking for gcov... gcov checking if C++ macro __func__ or __FUNCTION__ is defined... yes checking for latex... no checking for dvipdf... /usr/bin/dvipdf checking for mpiexec... /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpiexec checking for gcc... /usr/bin/gcc checking C compiler for serial utility programs... /usr/bin/gcc checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/dispatchers/Makefile config.status: creating src/libs/Makefile config.status: creating src/include/Makefile config.status: creating src/include/pnetcdf.h config.status: creating src/drivers/Makefile config.status: creating src/drivers/common/Makefile config.status: creating src/drivers/include/Makefile config.status: creating src/drivers/ncmpio/Makefile config.status: creating src/drivers/nc4io/Makefile config.status: creating src/drivers/ncadios/Makefile config.status: creating src/drivers/ncbbio/Makefile config.status: creating src/drivers/ncfoo/Makefile config.status: creating src/binding/Makefile config.status: creating src/binding/cxx/Makefile config.status: creating src/binding/f77/Makefile config.status: creating src/binding/f77/pnetcdf.inc config.status: creating src/binding/f90/Makefile config.status: creating src/binding/f90/pnetcdf.f90 config.status: creating src/binding/f90/api.fh config.status: creating src/binding/f90/nfmpi_constants.fh config.status: creating src/utils/Makefile config.status: creating src/utils/ncoffsets/Makefile config.status: creating src/utils/pnetcdf_version/Makefile config.status: creating src/utils/ncvalidator/Makefile config.status: creating src/utils/ncmpidiff/Makefile config.status: creating src/utils/ncmpidump/Makefile config.status: creating src/utils/ncmpigen/Makefile config.status: creating src/utils/ncmpilogdump/Makefile config.status: creating src/utils/pnetcdf-config config.status: creating src/packaging/Makefile config.status: creating src/packaging/pnetcdf.pc config.status: creating examples/Makefile config.status: creating examples/adios/Makefile config.status: creating examples/C/Makefile config.status: creating examples/tutorial/Makefile config.status: creating examples/CXX/Makefile config.status: creating examples/F77/Makefile config.status: creating examples/F90/Makefile config.status: creating examples/burst_buffer/Makefile config.status: creating benchmarks/Makefile config.status: creating benchmarks/C/Makefile config.status: creating benchmarks/FLASH-IO/Makefile config.status: creating doc/Makefile config.status: creating doc/pnetcdf-api/Makefile config.status: creating man/Makefile config.status: creating test/Makefile config.status: creating test/common/Makefile config.status: creating test/C/Makefile config.status: creating test/fandc/Makefile config.status: creating test/nc_test/Makefile config.status: creating test/cdf_format/Makefile config.status: creating test/nc4/Makefile config.status: creating test/adios/Makefile config.status: creating test/header/Makefile config.status: creating test/testcases/Makefile config.status: creating test/nonblocking/Makefile config.status: creating test/largefile/Makefile config.status: creating test/CXX/Makefile config.status: creating test/subfile/Makefile config.status: creating test/nf_test/Makefile config.status: creating test/nf_test/tests.inc config.status: creating test/nf90_test/Makefile config.status: creating test/nf90_test/tests.inc config.status: creating test/F90/Makefile config.status: creating test/burst_buffer/Makefile config.status: creating src/include/config.h config.status: executing depfiles commands config.status: executing libtool commands ------------------------------------------------------------------------------ PnetCDF Version 1.12.1 Features: Build static libraries - yes Build shared libraries - yes Build Fortran APIs - yes Build C++ APIs - yes Compilers: MPICC = /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc MPICXX = /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx MPIF77 = /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 MPIF90 = /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 CFLAGS = -fstack-protector -O3 CXXFLAGS = -fstack-protector -O3 FFLAGS = -ffree-line-length-0 -O3 FCFLAGS = -ffree-line-length-0 -O3 LIBS = -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lstdc++ -ldl -lmpifort -lmpi -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath Now run 'make' to build the library and utility tools. Then run 'make []' for testing and installation, where the optional can be: tests - build all test programs (build only, no run) check - run sequential test programs ptest - run parallel test programs on 4 MPI processes ptests - run parallel test programs on 3,4,6,8 MPI processes install - install PnetCDF library in /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt ------------------------------------------------------------------------------Making clean in src make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src' Making clean in include make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/include' rm -rf .libs _libs rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/include' Making clean in dispatchers make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/dispatchers' test -z "attr_getput.c var_getput.c *.gcda *.gcno *.gcov gmon.out" || rm -f attr_getput.c var_getput.c *.gcda *.gcno *.gcov gmon.out rm -rf .libs _libs test -z "libdispatchers.la" || rm -f libdispatchers.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/dispatchers' Making clean in drivers make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers' Making clean in include make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/include' test -z "ncx.h" || rm -f ncx.h rm -rf .libs _libs rm -f *.lo make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/include' Making clean in common make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/common' test -z "ncx.c convert_swap.c *.gcda *.gcno *.gcov gmon.out" || rm -f ncx.c convert_swap.c *.gcda *.gcno *.gcov gmon.out rm -rf .libs _libs test -z "libcommon.la" || rm -f libcommon.la rm -f ./so_locations rm -f *.o rm -f *.lo make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/common' Making clean in ncmpio make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/ncmpio' test -z "ncmpio_getput.c ncmpio_i_getput.c ncmpio_varn.c ncmpio_i_varn.c ncmpio_attr.c core core.* *.gcda *.gcno *.gcov gmon.out" || rm -f ncmpio_getput.c ncmpio_i_getput.c ncmpio_varn.c ncmpio_i_varn.c ncmpio_attr.c core core.* *.gcda *.gcno *.gcov gmon.out rm -rf .libs _libs test -z "libncmpio.la" || rm -f libncmpio.la rm -f ./so_locations rm -f *.o rm -f *.lo make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/ncmpio' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers' rm -rf .libs _libs rm -f *.lo make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers' Making clean in binding make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding' Making clean in cxx make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/cxx' test -z "core core.* *.gcda *.gcno *.gcov gmon.out pnetcdf a.out" || rm -f core core.* *.gcda *.gcno *.gcov gmon.out pnetcdf a.out rm -rf .libs _libs test -z "libcxx.la" || rm -f libcxx.la rm -f ./so_locations rm -f *.o rm -f *.lo make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/cxx' Making clean in f77 make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/f77' test -z "mpifnetcdf.h issyserrf.c xstrerrorf.c xstrerrnof.c xinq_libversf.c allf.c *.gcda *.gcno *.gcov gmon.out" || rm -f mpifnetcdf.h issyserrf.c xstrerrorf.c xstrerrnof.c xinq_libversf.c allf.c *.gcda *.gcno *.gcov gmon.out rm -rf .libs _libs test -z "libf77.la" || rm -f libf77.la rm -f ./so_locations rm -f *.o rm -f *.lo make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/f77' Making clean in f90 make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/f90' test -z "pnetcdf.mod getput_text.fh getput_var.fh getput_varn.fh getput_vard.fh *.gcda *.gcno *.gcov gmon.out" || rm -f pnetcdf.mod getput_text.fh getput_var.fh getput_varn.fh getput_vard.fh *.gcda *.gcno *.gcov gmon.out rm -rf .libs _libs test -z "libf90.la" || rm -f libf90.la rm -f ./so_locations rm -f *.o rm -f *.lo make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/f90' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding' rm -rf .libs _libs rm -f *.lo make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding' Making clean in packaging make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/packaging' rm -rf .libs _libs rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/packaging' Making clean in . make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src' rm -rf .libs _libs rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src' Making clean in libs make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/libs' test -z "a.out" || rm -f a.out test -z "libpnetcdf.la" || rm -f libpnetcdf.la rm -f ./so_locations rm -rf .libs _libs rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/libs' Making clean in utils make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils' Making clean in ncmpigen make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncmpigen' rm -f ncmpigen test -z "c0.nc c1.cdl c1.nc c2.cdl f0.nc ctest.c ctest ctest0.nc ctest1.cdl ftest.f ftest ftest0.nc ftest1.cdl lex.ncmpi.c y.tab.c y.tab.h core core.* *.gcda *.gcno *.gcov gmon.out" || rm -f c0.nc c1.cdl c1.nc c2.cdl f0.nc ctest.c ctest ctest0.nc ctest1.cdl ftest.f ftest ftest0.nc ftest1.cdl lex.ncmpi.c y.tab.c y.tab.h core core.* *.gcda *.gcno *.gcov gmon.out rm -rf .libs _libs rm -f *.o rm -f *.lo make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncmpigen' Making clean in ncmpidump make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncmpidump' rm -f ncmpidump test -z "test0.nc test1.nc test1.cdl test2.cdl core core.* *.gcda *.gcno *.gcov gmon.out" || rm -f test0.nc test1.nc test1.cdl test2.cdl core core.* *.gcda *.gcno *.gcov gmon.out rm -rf .libs _libs rm -f *.o rm -f *.lo make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncmpidump' Making clean in ncmpidiff make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncmpidiff' rm -f ncmpidiff cdfdiff test -z "core core.* *.gcda *.gcno *.gcov gmon.out" || rm -f core core.* *.gcda *.gcno *.gcov gmon.out rm -rf .libs _libs rm -f *.o rm -f *.lo make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncmpidiff' Making clean in ncvalidator make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncvalidator' rm -f ncvalidator rm -f ncvalidator tst_open test -z "core core.* *.gcda *.gcno *.gcov gmon.out" || rm -f core core.* *.gcda *.gcno *.gcov gmon.out rm -rf .libs _libs rm -f *.o test -z "xfail_runs.sh.log wrap_runs.sh.log" || rm -f xfail_runs.sh.log wrap_runs.sh.log test -z "xfail_runs.sh.trs wrap_runs.sh.trs" || rm -f xfail_runs.sh.trs wrap_runs.sh.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncvalidator' Making clean in pnetcdf_version make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/pnetcdf_version' rm -f pnetcdf_version rm -rf .libs _libs rm -f *.o rm -f *.lo make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/pnetcdf_version' Making clean in ncoffsets make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncoffsets' rm -f ncoffsets rm -rf .libs _libs rm -f *.o rm -f *.lo make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncoffsets' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils' rm -rf .libs _libs rm -f *.lo make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src' Making clean in man make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/man' test -z "pnetcdf.3 pnetcdf_f77.3 pnetcdf_f90.3" || rm -f pnetcdf.3 pnetcdf_f77.3 pnetcdf_f90.3 rm -rf .libs _libs rm -f *.lo make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/man' Making clean in examples make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples' Making clean in C make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/C' rm -f collective_write nonblocking_write nonblocking_write_in_def column_wise block_cyclic flexible_api get_info hints mput put_varn_float put_varn_int create_open global_attributes put_vara get_vara transpose transpose2D vard_int i_varn_int64 bput_varn_uint bput_varn_int64 fill_mode ghost_cell req_all vard_mvars time_var test -z "core core.* *.gcda *.gcno *.gcov gmon.out ./collective_write.nc ./nonblocking_write.nc ./nonblocking_write_in_def.nc ./column_wise.nc ./block_cyclic.nc ./flexible_api.nc ./get_info.nc ./hints.nc ./mput.nc ./put_varn_float.nc ./put_varn_int.nc ./create_open.nc ./global_attributes.nc ./put_vara.nc ./get_vara.nc ./transpose.nc ./transpose2D.nc ./vard_int.nc ./i_varn_int64.nc ./bput_varn_uint.nc ./bput_varn_int64.nc ./fill_mode.nc ./ghost_cell.nc ./req_all.nc ./vard_mvars.nc ./time_var.nc ./collective_write.bb.nc ./nonblocking_write.bb.nc ./nonblocking_write_in_def.bb.nc ./column_wise.bb.nc ./block_cyclic.bb.nc ./flexible_api.bb.nc ./get_info.bb.nc ./hints.bb.nc ./mput.bb.nc ./put_varn_float.bb.nc ./put_varn_int.bb.nc ./create_open.bb.nc ./global_attributes.bb.nc ./put_vara.bb.nc ./get_vara.bb.nc ./transpose.bb.nc ./transpose2D.bb.nc ./vard_int.bb.nc ./i_varn_int64.bb.nc ./bput_varn_uint.bb.nc ./bput_varn_int64.bb.nc ./fill_mode.bb.nc ./ghost_cell.bb.nc ./req_all.bb.nc ./vard_mvars.bb.nc ./time_var.bb.nc ./pthread.nc.* ./testfile.nc" || rm -f core core.* *.gcda *.gcno *.gcov gmon.out ./collective_write.nc ./nonblocking_write.nc ./nonblocking_write_in_def.nc ./column_wise.nc ./block_cyclic.nc ./flexible_api.nc ./get_info.nc ./hints.nc ./mput.nc ./put_varn_float.nc ./put_varn_int.nc ./create_open.nc ./global_attributes.nc ./put_vara.nc ./get_vara.nc ./transpose.nc ./transpose2D.nc ./vard_int.nc ./i_varn_int64.nc ./bput_varn_uint.nc ./bput_varn_int64.nc ./fill_mode.nc ./ghost_cell.nc ./req_all.nc ./vard_mvars.nc ./time_var.nc ./collective_write.bb.nc ./nonblocking_write.bb.nc ./nonblocking_write_in_def.bb.nc ./column_wise.bb.nc ./block_cyclic.bb.nc ./flexible_api.bb.nc ./get_info.bb.nc ./hints.bb.nc ./mput.bb.nc ./put_varn_float.bb.nc ./put_varn_int.bb.nc ./create_open.bb.nc ./global_attributes.bb.nc ./put_vara.bb.nc ./get_vara.bb.nc ./transpose.bb.nc ./transpose2D.bb.nc ./vard_int.bb.nc ./i_varn_int64.bb.nc ./bput_varn_uint.bb.nc ./bput_varn_int64.bb.nc ./fill_mode.bb.nc ./ghost_cell.bb.nc ./req_all.bb.nc ./vard_mvars.bb.nc ./time_var.bb.nc ./pthread.nc.* ./testfile.nc rm -rf .libs _libs rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/C' Making clean in tutorial make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/tutorial' rm -f pnetcdf-write-from-master pnetcdf-read-from-master pnetcdf-write-nfiles pnetcdf-read-nfiles pnetcdf-write-standard pnetcdf-read-standard pnetcdf-write-flexible pnetcdf-read-flexible pnetcdf-write-nb pnetcdf-read-nb pnetcdf-write-buffered pnetcdf-permute pnetcdf-write-bufferedf77 pnetcdf-write-bufferedf test -z "core core.* *.gcda *.gcno *.gcov gmon.out ./pnetcdf-write-nfiles.*.nc ./pnetcdf-write-from-master.nc ./pnetcdf-read-from-master.nc ./pnetcdf-write-nfiles.nc ./pnetcdf-read-nfiles.nc ./pnetcdf-write-standard.nc ./pnetcdf-read-standard.nc ./pnetcdf-write-flexible.nc ./pnetcdf-read-flexible.nc ./pnetcdf-write-nb.nc ./pnetcdf-read-nb.nc ./pnetcdf-write-buffered.nc ./pnetcdf-permute.nc ./pnetcdf-write-bufferedf77.nc ./pnetcdf-write-bufferedf.nc ./pnetcdf-write-from-master.bb.nc ./pnetcdf-read-from-master.bb.nc ./pnetcdf-write-nfiles.bb.nc ./pnetcdf-read-nfiles.bb.nc ./pnetcdf-write-standard.bb.nc ./pnetcdf-read-standard.bb.nc ./pnetcdf-write-flexible.bb.nc ./pnetcdf-read-flexible.bb.nc ./pnetcdf-write-nb.bb.nc ./pnetcdf-read-nb.bb.nc ./pnetcdf-write-buffered.bb.nc ./pnetcdf-permute.bb.nc ./pnetcdf-write-bufferedf77.bb.nc ./pnetcdf-write-bufferedf.bb.nc" || rm -f core core.* *.gcda *.gcno *.gcov gmon.out ./pnetcdf-write-nfiles.*.nc ./pnetcdf-write-from-master.nc ./pnetcdf-read-from-master.nc ./pnetcdf-write-nfiles.nc ./pnetcdf-read-nfiles.nc ./pnetcdf-write-standard.nc ./pnetcdf-read-standard.nc ./pnetcdf-write-flexible.nc ./pnetcdf-read-flexible.nc ./pnetcdf-write-nb.nc ./pnetcdf-read-nb.nc ./pnetcdf-write-buffered.nc ./pnetcdf-permute.nc ./pnetcdf-write-bufferedf77.nc ./pnetcdf-write-bufferedf.nc ./pnetcdf-write-from-master.bb.nc ./pnetcdf-read-from-master.bb.nc ./pnetcdf-write-nfiles.bb.nc ./pnetcdf-read-nfiles.bb.nc ./pnetcdf-write-standard.bb.nc ./pnetcdf-read-standard.bb.nc ./pnetcdf-write-flexible.bb.nc ./pnetcdf-read-flexible.bb.nc ./pnetcdf-write-nb.bb.nc ./pnetcdf-read-nb.bb.nc ./pnetcdf-write-buffered.bb.nc ./pnetcdf-permute.bb.nc ./pnetcdf-write-bufferedf77.bb.nc ./pnetcdf-write-bufferedf.bb.nc rm -rf .libs _libs rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/tutorial' Making clean in CXX make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/CXX' rm -f collective_write nonblocking_write column_wise block_cyclic flexible_api get_info hints put_varn_float put_varn_int put_vara get_vara transpose vard_int fill_mode SimpleXyWr test -z "core core.* *.gcda *.gcno *.gcov gmon.out ./collective_write.nc ./nonblocking_write.nc ./column_wise.nc ./block_cyclic.nc ./flexible_api.nc ./get_info.nc ./hints.nc ./put_varn_float.nc ./put_varn_int.nc ./put_vara.nc ./get_vara.nc ./transpose.nc ./vard_int.nc ./fill_mode.nc ./SimpleXyWr.nc ./collective_write.bb.nc ./nonblocking_write.bb.nc ./column_wise.bb.nc ./block_cyclic.bb.nc ./flexible_api.bb.nc ./get_info.bb.nc ./hints.bb.nc ./put_varn_float.bb.nc ./put_varn_int.bb.nc ./put_vara.bb.nc ./get_vara.bb.nc ./transpose.bb.nc ./vard_int.bb.nc ./fill_mode.bb.nc ./SimpleXyWr.bb.nc a.out" || rm -f core core.* *.gcda *.gcno *.gcov gmon.out ./collective_write.nc ./nonblocking_write.nc ./column_wise.nc ./block_cyclic.nc ./flexible_api.nc ./get_info.nc ./hints.nc ./put_varn_float.nc ./put_varn_int.nc ./put_vara.nc ./get_vara.nc ./transpose.nc ./vard_int.nc ./fill_mode.nc ./SimpleXyWr.nc ./collective_write.bb.nc ./nonblocking_write.bb.nc ./column_wise.bb.nc ./block_cyclic.bb.nc ./flexible_api.bb.nc ./get_info.bb.nc ./hints.bb.nc ./put_varn_float.bb.nc ./put_varn_int.bb.nc ./put_vara.bb.nc ./get_vara.bb.nc ./transpose.bb.nc ./vard_int.bb.nc ./fill_mode.bb.nc ./SimpleXyWr.bb.nc a.out rm -rf .libs _libs rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/CXX' Making clean in F77 make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/F77' rm -f nonblocking_write column_wise block_cyclic flexible_api get_info hints put_vara put_varn_real put_varn_int transpose i_varn_real bput_varn_int8 fill_mode vard_int time_var test -z "core core.* *.gcda *.gcno *.gcov gmon.out ./nonblocking_write.nc ./column_wise.nc ./block_cyclic.nc ./flexible_api.nc ./get_info.nc ./hints.nc ./put_vara.nc ./put_varn_real.nc ./put_varn_int.nc ./transpose.nc ./i_varn_real.nc ./bput_varn_int8.nc ./fill_mode.nc ./vard_int.nc ./time_var.nc ./nonblocking_write.bb.nc ./column_wise.bb.nc ./block_cyclic.bb.nc ./flexible_api.bb.nc ./get_info.bb.nc ./hints.bb.nc ./put_vara.bb.nc ./put_varn_real.bb.nc ./put_varn_int.bb.nc ./transpose.bb.nc ./i_varn_real.bb.nc ./bput_varn_int8.bb.nc ./fill_mode.bb.nc ./vard_int.bb.nc ./time_var.bb.nc" || rm -f core core.* *.gcda *.gcno *.gcov gmon.out ./nonblocking_write.nc ./column_wise.nc ./block_cyclic.nc ./flexible_api.nc ./get_info.nc ./hints.nc ./put_vara.nc ./put_varn_real.nc ./put_varn_int.nc ./transpose.nc ./i_varn_real.nc ./bput_varn_int8.nc ./fill_mode.nc ./vard_int.nc ./time_var.nc ./nonblocking_write.bb.nc ./column_wise.bb.nc ./block_cyclic.bb.nc ./flexible_api.bb.nc ./get_info.bb.nc ./hints.bb.nc ./put_vara.bb.nc ./put_varn_real.bb.nc ./put_varn_int.bb.nc ./transpose.bb.nc ./i_varn_real.bb.nc ./bput_varn_int8.bb.nc ./fill_mode.bb.nc ./vard_int.bb.nc ./time_var.bb.nc rm -rf .libs _libs rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/F77' Making clean in F90 make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/F90' rm -f nonblocking_write column_wise block_cyclic flexible_api get_info hints put_var put_varn_real put_varn_int transpose fill_mode vard_int test -z "core core.* *.gcda *.gcno *.gcov gmon.out ./nonblocking_write.nc ./column_wise.nc ./block_cyclic.nc ./flexible_api.nc ./get_info.nc ./hints.nc ./put_var.nc ./put_varn_real.nc ./put_varn_int.nc ./transpose.nc ./fill_mode.nc ./vard_int.nc ./nonblocking_write.bb.nc ./column_wise.bb.nc ./block_cyclic.bb.nc ./flexible_api.bb.nc ./get_info.bb.nc ./hints.bb.nc ./put_var.bb.nc ./put_varn_real.bb.nc ./put_varn_int.bb.nc ./transpose.bb.nc ./fill_mode.bb.nc ./vard_int.bb.nc" || rm -f core core.* *.gcda *.gcno *.gcov gmon.out ./nonblocking_write.nc ./column_wise.nc ./block_cyclic.nc ./flexible_api.nc ./get_info.nc ./hints.nc ./put_var.nc ./put_varn_real.nc ./put_varn_int.nc ./transpose.nc ./fill_mode.nc ./vard_int.nc ./nonblocking_write.bb.nc ./column_wise.bb.nc ./block_cyclic.bb.nc ./flexible_api.bb.nc ./get_info.bb.nc ./hints.bb.nc ./put_var.bb.nc ./put_varn_real.bb.nc ./put_varn_int.bb.nc ./transpose.bb.nc ./fill_mode.bb.nc ./vard_int.bb.nc rm -rf .libs _libs rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/F90' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples' rm -rf .libs _libs rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples' Making clean in benchmarks make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/benchmarks' Making clean in C make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/benchmarks/C' rm -f aggregation write_block_read_column test -z "core core.* *.gcda *.gcno *.gcov gmon.out ./aggregation.nc ./write_block_read_column.nc ./aggregation.bb.nc ./write_block_read_column.bb.nc" || rm -f core core.* *.gcda *.gcno *.gcov gmon.out ./aggregation.nc ./write_block_read_column.nc ./aggregation.bb.nc ./write_block_read_column.bb.nc rm -rf .libs _libs rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/benchmarks/C' Making clean in FLASH-IO make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/benchmarks/FLASH-IO' rm -f flash_benchmark_io test -z "core core.* *.gcda *.gcno *.gcov gmon.out ./flash_benchmark_io.ncmpi_chk_0000.nc ./flash_benchmark_io.ncmpi_plt_crn_0000.nc ./flash_benchmark_io.ncmpi_plt_cnt_0000.nc ./flash_benchmark_io.bb.ncmpi_chk_0000.nc ./flash_benchmark_io.bb.ncmpi_plt_crn_0000.nc ./flash_benchmark_io.bb.ncmpi_plt_cnt_0000.nc" || rm -f core core.* *.gcda *.gcno *.gcov gmon.out ./flash_benchmark_io.ncmpi_chk_0000.nc ./flash_benchmark_io.ncmpi_plt_crn_0000.nc ./flash_benchmark_io.ncmpi_plt_cnt_0000.nc ./flash_benchmark_io.bb.ncmpi_chk_0000.nc ./flash_benchmark_io.bb.ncmpi_plt_crn_0000.nc ./flash_benchmark_io.bb.ncmpi_plt_cnt_0000.nc rm -rf .libs _libs rm -f flash_benchmark_io rm -f *.o test -z "" || rm -f test -z "" || rm -f test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/benchmarks/FLASH-IO' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/benchmarks' rm -rf .libs _libs rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/benchmarks' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/benchmarks' Making clean in test make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test' Making clean in common make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/common' test -z "libtestutils.la libtestutilsf.la" || rm -f libtestutils.la libtestutilsf.la rm -f ./so_locations test -z "core.* *.gcda *.gcno *.gcov gmon.out testutilsf.mod" || rm -f core.* *.gcda *.gcno *.gcov gmon.out testutilsf.mod rm -rf .libs _libs rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/common' Making clean in C make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/C' rm -f pres_temp_4D_wr pres_temp_4D_rd test -z "./pres_temp_4D.nc ./pres_temp_4D.nc4 ./pres_temp_4D.bb.nc core core.* *.gcda *.gcno *.gcov gmon.out" || rm -f ./pres_temp_4D.nc ./pres_temp_4D.nc4 ./pres_temp_4D.bb.nc core core.* *.gcda *.gcno *.gcov gmon.out rm -rf .libs _libs rm -f *.o test -z "seq_runs.log" || rm -f seq_runs.log test -z "seq_runs.trs" || rm -f seq_runs.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/C' Making clean in fandc make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/fandc' rm -f pnctest csnap pnf_test pnctestf fixedform freeform test -z "core core.* *.gcda *.gcno *.gcov gmon.out" || rm -f core core.* *.gcda *.gcno *.gcov gmon.out rm -rf .libs _libs rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/fandc' Making clean in nc_test make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nc_test' rm -f t_nc tst_misc tst_norm tst_small tst_names tst_atts3 tst_atts tst_nofill nc_test test -z "tests.h test_get.c test_put.c test_iget.c test_iput.c test_read.c test_write.c ./test.nc ./scratch.nc ./tooth-fairy.nc ./tst_nofill.nc.fill ./tst_nofill.nc.nofill ./tst_atts3.nc.2 ./tst_atts3.bb.nc.2 core core.* *.gcda *.gcno *.gcov gmon.out ./t_nc.nc ./tst_misc.nc ./tst_norm.nc ./tst_small.nc ./tst_names.nc ./tst_atts3.nc ./tst_atts.nc ./t_nc.bb.nc ./tst_misc.bb.nc ./tst_norm.bb.nc ./tst_small.bb.nc ./tst_names.bb.nc ./tst_atts3.bb.nc ./tst_atts.bb.nc" || rm -f tests.h test_get.c test_put.c test_iget.c test_iput.c test_read.c test_write.c ./test.nc ./scratch.nc ./tooth-fairy.nc ./tst_nofill.nc.fill ./tst_nofill.nc.nofill ./tst_atts3.nc.2 ./tst_atts3.bb.nc.2 core core.* *.gcda *.gcno *.gcov gmon.out ./t_nc.nc ./tst_misc.nc ./tst_norm.nc ./tst_small.nc ./tst_names.nc ./tst_atts3.nc ./tst_atts.nc ./t_nc.bb.nc ./tst_misc.bb.nc ./tst_norm.bb.nc ./tst_small.bb.nc ./tst_names.bb.nc ./tst_atts3.bb.nc ./tst_atts.bb.nc rm -rf .libs _libs rm -f *.o test -z "t_nc.log tst_misc.log tst_norm.log tst_small.log tst_names.log tst_atts3.log tst_atts.log seq_runs.log" || rm -f t_nc.log tst_misc.log tst_norm.log tst_small.log tst_names.log tst_atts3.log tst_atts.log seq_runs.log test -z "t_nc.trs tst_misc.trs tst_norm.trs tst_small.trs tst_names.trs tst_atts3.trs tst_atts.trs seq_runs.trs" || rm -f t_nc.trs tst_misc.trs tst_norm.trs tst_small.trs tst_names.trs tst_atts3.trs tst_atts.trs seq_runs.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nc_test' Making clean in cdf_format make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/cdf_format' rm -f test_inq_format cdf_type dim_cdf12 tst_open_cdf5 tst_corrupt test -z "./cdf_type.nc ./cdf_type.bb.nc ./dim_cdf12.nc ./dim_cdf12.bb.nc core core.* *.gcda *.gcno *.gcov gmon.out" || rm -f ./cdf_type.nc ./cdf_type.bb.nc ./dim_cdf12.nc ./dim_cdf12.bb.nc core core.* *.gcda *.gcno *.gcov gmon.out rm -rf .libs _libs rm -f *.o test -z "cdf_type.log dim_cdf12.log seq_runs.log xfail_runs.log" || rm -f cdf_type.log dim_cdf12.log seq_runs.log xfail_runs.log test -z "cdf_type.trs dim_cdf12.trs seq_runs.trs xfail_runs.trs" || rm -f cdf_type.trs dim_cdf12.trs seq_runs.trs xfail_runs.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/cdf_format' Making clean in header make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/header' rm -f header_consistency test -z "./header_consistency.nc ./header_consistency.bb.nc core core.* *.gcda *.gcno *.gcov gmon.out" || rm -f ./header_consistency.nc ./header_consistency.bb.nc core core.* *.gcda *.gcno *.gcov gmon.out rm -rf .libs _libs rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/header' Making clean in testcases make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/testcases' rm -f ncmpi_vars_null_stride vectors collective_error test_varm alignment_test flexible flexible2 flexible_varm nonblocking noclobber record inq_num_vars varn_int modes one_record inq_recsize test_vard test_vard_rec test_vard_multiple varn_contig ivarn check_striping add_var buftype_free last_large_var check_type test_erange scalar null_args tst_dimsizes mix_collectives large_var_cdf5 tst_max_var_dims tst_info tst_vars_fill tst_def_var_fill test_fillvalue error_precedence tst_free_comm erange_fill varn_intf attrf buftype_freef put_parameter test_vardf inq_num_varsf inq_recsizef test_vardf90 varn_real put_all_kinds redef1 iput_all_kinds tst_version test -z "put_all_kinds.c erange_fill.c tst_vars_fill.c iput_all_kinds.c error_precedence.c null_args.c core core.* *.gcda *.gcno *.gcov gmon.out ./redef1.nc ./redef1.bb.nc ./redef2.nc ./tst_pthread.nc.* ./testfile.nc* ./ncmpi_vars_null_stride.nc ./vectors.nc ./collective_error.nc ./test_varm.nc ./alignment_test.nc ./flexible.nc ./flexible2.nc ./flexible_varm.nc ./nonblocking.nc ./noclobber.nc ./record.nc ./inq_num_vars.nc ./varn_int.nc ./modes.nc ./one_record.nc ./inq_recsize.nc ./test_vard.nc ./test_vard_rec.nc ./test_vard_multiple.nc ./varn_contig.nc ./ivarn.nc ./check_striping.nc ./add_var.nc ./buftype_free.nc ./last_large_var.nc ./check_type.nc ./test_erange.nc ./scalar.nc ./null_args.nc ./tst_dimsizes.nc ./mix_collectives.nc ./large_var_cdf5.nc ./tst_max_var_dims.nc ./tst_info.nc ./tst_vars_fill.nc ./tst_def_var_fill.nc ./test_fillvalue.nc ./error_precedence.nc ./tst_free_comm.nc ./erange_fill.nc ./varn_intf.nc ./attrf.nc ./buftype_freef.nc ./put_parameter.nc ./test_vardf.nc ./inq_num_varsf.nc ./inq_recsizef.nc ./test_vardf90.nc ./varn_real.nc ./put_all_kinds.nc ./redef1.nc ./iput_all_kinds.nc ./tst_version.nc ./ncmpi_vars_null_stride.nc1 ./vectors.nc1 ./collective_error.nc1 ./test_varm.nc1 ./alignment_test.nc1 ./flexible.nc1 ./flexible2.nc1 ./flexible_varm.nc1 ./nonblocking.nc1 ./noclobber.nc1 ./record.nc1 ./inq_num_vars.nc1 ./varn_int.nc1 ./modes.nc1 ./one_record.nc1 ./inq_recsize.nc1 ./test_vard.nc1 ./test_vard_rec.nc1 ./test_vard_multiple.nc1 ./varn_contig.nc1 ./ivarn.nc1 ./check_striping.nc1 ./add_var.nc1 ./buftype_free.nc1 ./last_large_var.nc1 ./check_type.nc1 ./test_erange.nc1 ./scalar.nc1 ./null_args.nc1 ./tst_dimsizes.nc1 ./mix_collectives.nc1 ./large_var_cdf5.nc1 ./tst_max_var_dims.nc1 ./tst_info.nc1 ./tst_vars_fill.nc1 ./tst_def_var_fill.nc1 ./test_fillvalue.nc1 ./error_precedence.nc1 ./tst_free_comm.nc1 ./erange_fill.nc1 ./varn_intf.nc1 ./attrf.nc1 ./buftype_freef.nc1 ./put_parameter.nc1 ./test_vardf.nc1 ./inq_num_varsf.nc1 ./inq_recsizef.nc1 ./test_vardf90.nc1 ./varn_real.nc1 ./put_all_kinds.nc1 ./redef1.nc1 ./iput_all_kinds.nc1 ./tst_version.nc1 ./ncmpi_vars_null_stride.nc2 ./vectors.nc2 ./collective_error.nc2 ./test_varm.nc2 ./alignment_test.nc2 ./flexible.nc2 ./flexible2.nc2 ./flexible_varm.nc2 ./nonblocking.nc2 ./noclobber.nc2 ./record.nc2 ./inq_num_vars.nc2 ./varn_int.nc2 ./modes.nc2 ./one_record.nc2 ./inq_recsize.nc2 ./test_vard.nc2 ./test_vard_rec.nc2 ./test_vard_multiple.nc2 ./varn_contig.nc2 ./ivarn.nc2 ./check_striping.nc2 ./add_var.nc2 ./buftype_free.nc2 ./last_large_var.nc2 ./check_type.nc2 ./test_erange.nc2 ./scalar.nc2 ./null_args.nc2 ./tst_dimsizes.nc2 ./mix_collectives.nc2 ./large_var_cdf5.nc2 ./tst_max_var_dims.nc2 ./tst_info.nc2 ./tst_vars_fill.nc2 ./tst_def_var_fill.nc2 ./test_fillvalue.nc2 ./error_precedence.nc2 ./tst_free_comm.nc2 ./erange_fill.nc2 ./varn_intf.nc2 ./attrf.nc2 ./buftype_freef.nc2 ./put_parameter.nc2 ./test_vardf.nc2 ./inq_num_varsf.nc2 ./inq_recsizef.nc2 ./test_vardf90.nc2 ./varn_real.nc2 ./put_all_kinds.nc2 ./redef1.nc2 ./iput_all_kinds.nc2 ./tst_version.nc2 ./ncmpi_vars_null_stride.nc3 ./vectors.nc3 ./collective_error.nc3 ./test_varm.nc3 ./alignment_test.nc3 ./flexible.nc3 ./flexible2.nc3 ./flexible_varm.nc3 ./nonblocking.nc3 ./noclobber.nc3 ./record.nc3 ./inq_num_vars.nc3 ./varn_int.nc3 ./modes.nc3 ./one_record.nc3 ./inq_recsize.nc3 ./test_vard.nc3 ./test_vard_rec.nc3 ./test_vard_multiple.nc3 ./varn_contig.nc3 ./ivarn.nc3 ./check_striping.nc3 ./add_var.nc3 ./buftype_free.nc3 ./last_large_var.nc3 ./check_type.nc3 ./test_erange.nc3 ./scalar.nc3 ./null_args.nc3 ./tst_dimsizes.nc3 ./mix_collectives.nc3 ./large_var_cdf5.nc3 ./tst_max_var_dims.nc3 ./tst_info.nc3 ./tst_vars_fill.nc3 ./tst_def_var_fill.nc3 ./test_fillvalue.nc3 ./error_precedence.nc3 ./tst_free_comm.nc3 ./erange_fill.nc3 ./varn_intf.nc3 ./attrf.nc3 ./buftype_freef.nc3 ./put_parameter.nc3 ./test_vardf.nc3 ./inq_num_varsf.nc3 ./inq_recsizef.nc3 ./test_vardf90.nc3 ./varn_real.nc3 ./put_all_kinds.nc3 ./redef1.nc3 ./iput_all_kinds.nc3 ./tst_version.nc3 ./ncmpi_vars_null_stride.nc4 ./vectors.nc4 ./collective_error.nc4 ./test_varm.nc4 ./alignment_test.nc4 ./flexible.nc4 ./flexible2.nc4 ./flexible_varm.nc4 ./nonblocking.nc4 ./noclobber.nc4 ./record.nc4 ./inq_num_vars.nc4 ./varn_int.nc4 ./modes.nc4 ./one_record.nc4 ./inq_recsize.nc4 ./test_vard.nc4 ./test_vard_rec.nc4 ./test_vard_multiple.nc4 ./varn_contig.nc4 ./ivarn.nc4 ./check_striping.nc4 ./add_var.nc4 ./buftype_free.nc4 ./last_large_var.nc4 ./check_type.nc4 ./test_erange.nc4 ./scalar.nc4 ./null_args.nc4 ./tst_dimsizes.nc4 ./mix_collectives.nc4 ./large_var_cdf5.nc4 ./tst_max_var_dims.nc4 ./tst_info.nc4 ./tst_vars_fill.nc4 ./tst_def_var_fill.nc4 ./test_fillvalue.nc4 ./error_precedence.nc4 ./tst_free_comm.nc4 ./erange_fill.nc4 ./varn_intf.nc4 ./attrf.nc4 ./buftype_freef.nc4 ./put_parameter.nc4 ./test_vardf.nc4 ./inq_num_varsf.nc4 ./inq_recsizef.nc4 ./test_vardf90.nc4 ./varn_real.nc4 ./put_all_kinds.nc4 ./redef1.nc4 ./iput_all_kinds.nc4 ./tst_version.nc4 ./ncmpi_vars_null_stride.nc5 ./vectors.nc5 ./collective_error.nc5 ./test_varm.nc5 ./alignment_test.nc5 ./flexible.nc5 ./flexible2.nc5 ./flexible_varm.nc5 ./nonblocking.nc5 ./noclobber.nc5 ./record.nc5 ./inq_num_vars.nc5 ./varn_int.nc5 ./modes.nc5 ./one_record.nc5 ./inq_recsize.nc5 ./test_vard.nc5 ./test_vard_rec.nc5 ./test_vard_multiple.nc5 ./varn_contig.nc5 ./ivarn.nc5 ./check_striping.nc5 ./add_var.nc5 ./buftype_free.nc5 ./last_large_var.nc5 ./check_type.nc5 ./test_erange.nc5 ./scalar.nc5 ./null_args.nc5 ./tst_dimsizes.nc5 ./mix_collectives.nc5 ./large_var_cdf5.nc5 ./tst_max_var_dims.nc5 ./tst_info.nc5 ./tst_vars_fill.nc5 ./tst_def_var_fill.nc5 ./test_fillvalue.nc5 ./error_precedence.nc5 ./tst_free_comm.nc5 ./erange_fill.nc5 ./varn_intf.nc5 ./attrf.nc5 ./buftype_freef.nc5 ./put_parameter.nc5 ./test_vardf.nc5 ./inq_num_varsf.nc5 ./inq_recsizef.nc5 ./test_vardf90.nc5 ./varn_real.nc5 ./put_all_kinds.nc5 ./redef1.nc5 ./iput_all_kinds.nc5 ./tst_version.nc5 ./ncmpi_vars_null_stride.bb.nc ./vectors.bb.nc ./collective_error.bb.nc ./test_varm.bb.nc ./alignment_test.bb.nc ./flexible.bb.nc ./flexible2.bb.nc ./flexible_varm.bb.nc ./nonblocking.bb.nc ./noclobber.bb.nc ./record.bb.nc ./inq_num_vars.bb.nc ./varn_int.bb.nc ./modes.bb.nc ./one_record.bb.nc ./inq_recsize.bb.nc ./test_vard.bb.nc ./test_vard_rec.bb.nc ./test_vard_multiple.bb.nc ./varn_contig.bb.nc ./ivarn.bb.nc ./check_striping.bb.nc ./add_var.bb.nc ./buftype_free.bb.nc ./last_large_var.bb.nc ./check_type.bb.nc ./test_erange.bb.nc ./scalar.bb.nc ./null_args.bb.nc ./tst_dimsizes.bb.nc ./mix_collectives.bb.nc ./large_var_cdf5.bb.nc ./tst_max_var_dims.bb.nc ./tst_info.bb.nc ./tst_vars_fill.bb.nc ./tst_def_var_fill.bb.nc ./test_fillvalue.bb.nc ./error_precedence.bb.nc ./tst_free_comm.bb.nc ./erange_fill.bb.nc ./varn_intf.bb.nc ./attrf.bb.nc ./buftype_freef.bb.nc ./put_parameter.bb.nc ./test_vardf.bb.nc ./inq_num_varsf.bb.nc ./inq_recsizef.bb.nc ./test_vardf90.bb.nc ./varn_real.bb.nc ./put_all_kinds.bb.nc ./redef1.bb.nc ./iput_all_kinds.bb.nc ./tst_version.bb.nc ./ncmpi_vars_null_stride.bb.nc1 ./vectors.bb.nc1 ./collective_error.bb.nc1 ./test_varm.bb.nc1 ./alignment_test.bb.nc1 ./flexible.bb.nc1 ./flexible2.bb.nc1 ./flexible_varm.bb.nc1 ./nonblocking.bb.nc1 ./noclobber.bb.nc1 ./record.bb.nc1 ./inq_num_vars.bb.nc1 ./varn_int.bb.nc1 ./modes.bb.nc1 ./one_record.bb.nc1 ./inq_recsize.bb.nc1 ./test_vard.bb.nc1 ./test_vard_rec.bb.nc1 ./test_vard_multiple.bb.nc1 ./varn_contig.bb.nc1 ./ivarn.bb.nc1 ./check_striping.bb.nc1 ./add_var.bb.nc1 ./buftype_free.bb.nc1 ./last_large_var.bb.nc1 ./check_type.bb.nc1 ./test_erange.bb.nc1 ./scalar.bb.nc1 ./null_args.bb.nc1 ./tst_dimsizes.bb.nc1 ./mix_collectives.bb.nc1 ./large_var_cdf5.bb.nc1 ./tst_max_var_dims.bb.nc1 ./tst_info.bb.nc1 ./tst_vars_fill.bb.nc1 ./tst_def_var_fill.bb.nc1 ./test_fillvalue.bb.nc1 ./error_precedence.bb.nc1 ./tst_free_comm.bb.nc1 ./erange_fill.bb.nc1 ./varn_intf.bb.nc1 ./attrf.bb.nc1 ./buftype_freef.bb.nc1 ./put_parameter.bb.nc1 ./test_vardf.bb.nc1 ./inq_num_varsf.bb.nc1 ./inq_recsizef.bb.nc1 ./test_vardf90.bb.nc1 ./varn_real.bb.nc1 ./put_all_kinds.bb.nc1 ./redef1.bb.nc1 ./iput_all_kinds.bb.nc1 ./tst_version.bb.nc1 ./ncmpi_vars_null_stride.bb.nc2 ./vectors.bb.nc2 ./collective_error.bb.nc2 ./test_varm.bb.nc2 ./alignment_test.bb.nc2 ./flexible.bb.nc2 ./flexible2.bb.nc2 ./flexible_varm.bb.nc2 ./nonblocking.bb.nc2 ./noclobber.bb.nc2 ./record.bb.nc2 ./inq_num_vars.bb.nc2 ./varn_int.bb.nc2 ./modes.bb.nc2 ./one_record.bb.nc2 ./inq_recsize.bb.nc2 ./test_vard.bb.nc2 ./test_vard_rec.bb.nc2 ./test_vard_multiple.bb.nc2 ./varn_contig.bb.nc2 ./ivarn.bb.nc2 ./check_striping.bb.nc2 ./add_var.bb.nc2 ./buftype_free.bb.nc2 ./last_large_var.bb.nc2 ./check_type.bb.nc2 ./test_erange.bb.nc2 ./scalar.bb.nc2 ./null_args.bb.nc2 ./tst_dimsizes.bb.nc2 ./mix_collectives.bb.nc2 ./large_var_cdf5.bb.nc2 ./tst_max_var_dims.bb.nc2 ./tst_info.bb.nc2 ./tst_vars_fill.bb.nc2 ./tst_def_var_fill.bb.nc2 ./test_fillvalue.bb.nc2 ./error_precedence.bb.nc2 ./tst_free_comm.bb.nc2 ./erange_fill.bb.nc2 ./varn_intf.bb.nc2 ./attrf.bb.nc2 ./buftype_freef.bb.nc2 ./put_parameter.bb.nc2 ./test_vardf.bb.nc2 ./inq_num_varsf.bb.nc2 ./inq_recsizef.bb.nc2 ./test_vardf90.bb.nc2 ./varn_real.bb.nc2 ./put_all_kinds.bb.nc2 ./redef1.bb.nc2 ./iput_all_kinds.bb.nc2 ./tst_version.bb.nc2 ./ncmpi_vars_null_stride.bb.nc3 ./vectors.bb.nc3 ./collective_error.bb.nc3 ./test_varm.bb.nc3 ./alignment_test.bb.nc3 ./flexible.bb.nc3 ./flexible2.bb.nc3 ./flexible_varm.bb.nc3 ./nonblocking.bb.nc3 ./noclobber.bb.nc3 ./record.bb.nc3 ./inq_num_vars.bb.nc3 ./varn_int.bb.nc3 ./modes.bb.nc3 ./one_record.bb.nc3 ./inq_recsize.bb.nc3 ./test_vard.bb.nc3 ./test_vard_rec.bb.nc3 ./test_vard_multiple.bb.nc3 ./varn_contig.bb.nc3 ./ivarn.bb.nc3 ./check_striping.bb.nc3 ./add_var.bb.nc3 ./buftype_free.bb.nc3 ./last_large_var.bb.nc3 ./check_type.bb.nc3 ./test_erange.bb.nc3 ./scalar.bb.nc3 ./null_args.bb.nc3 ./tst_dimsizes.bb.nc3 ./mix_collectives.bb.nc3 ./large_var_cdf5.bb.nc3 ./tst_max_var_dims.bb.nc3 ./tst_info.bb.nc3 ./tst_vars_fill.bb.nc3 ./tst_def_var_fill.bb.nc3 ./test_fillvalue.bb.nc3 ./error_precedence.bb.nc3 ./tst_free_comm.bb.nc3 ./erange_fill.bb.nc3 ./varn_intf.bb.nc3 ./attrf.bb.nc3 ./buftype_freef.bb.nc3 ./put_parameter.bb.nc3 ./test_vardf.bb.nc3 ./inq_num_varsf.bb.nc3 ./inq_recsizef.bb.nc3 ./test_vardf90.bb.nc3 ./varn_real.bb.nc3 ./put_all_kinds.bb.nc3 ./redef1.bb.nc3 ./iput_all_kinds.bb.nc3 ./tst_version.bb.nc3 ./ncmpi_vars_null_stride.bb.nc4 ./vectors.bb.nc4 ./collective_error.bb.nc4 ./test_varm.bb.nc4 ./alignment_test.bb.nc4 ./flexible.bb.nc4 ./flexible2.bb.nc4 ./flexible_varm.bb.nc4 ./nonblocking.bb.nc4 ./noclobber.bb.nc4 ./record.bb.nc4 ./inq_num_vars.bb.nc4 ./varn_int.bb.nc4 ./modes.bb.nc4 ./one_record.bb.nc4 ./inq_recsize.bb.nc4 ./test_vard.bb.nc4 ./test_vard_rec.bb.nc4 ./test_vard_multiple.bb.nc4 ./varn_contig.bb.nc4 ./ivarn.bb.nc4 ./check_striping.bb.nc4 ./add_var.bb.nc4 ./buftype_free.bb.nc4 ./last_large_var.bb.nc4 ./check_type.bb.nc4 ./test_erange.bb.nc4 ./scalar.bb.nc4 ./null_args.bb.nc4 ./tst_dimsizes.bb.nc4 ./mix_collectives.bb.nc4 ./large_var_cdf5.bb.nc4 ./tst_max_var_dims.bb.nc4 ./tst_info.bb.nc4 ./tst_vars_fill.bb.nc4 ./tst_def_var_fill.bb.nc4 ./test_fillvalue.bb.nc4 ./error_precedence.bb.nc4 ./tst_free_comm.bb.nc4 ./erange_fill.bb.nc4 ./varn_intf.bb.nc4 ./attrf.bb.nc4 ./buftype_freef.bb.nc4 ./put_parameter.bb.nc4 ./test_vardf.bb.nc4 ./inq_num_varsf.bb.nc4 ./inq_recsizef.bb.nc4 ./test_vardf90.bb.nc4 ./varn_real.bb.nc4 ./put_all_kinds.bb.nc4 ./redef1.bb.nc4 ./iput_all_kinds.bb.nc4 ./tst_version.bb.nc4 ./ncmpi_vars_null_stride.bb.nc5 ./vectors.bb.nc5 ./collective_error.bb.nc5 ./test_varm.bb.nc5 ./alignment_test.bb.nc5 ./flexible.bb.nc5 ./flexible2.bb.nc5 ./flexible_varm.bb.nc5 ./nonblocking.bb.nc5 ./noclobber.bb.nc5 ./record.bb.nc5 ./inq_num_vars.bb.nc5 ./varn_int.bb.nc5 ./modes.bb.nc5 ./one_record.bb.nc5 ./inq_recsize.bb.nc5 ./test_vard.bb.nc5 ./test_vard_rec.bb.nc5 ./test_vard_multiple.bb.nc5 ./varn_contig.bb.nc5 ./ivarn.bb.nc5 ./check_striping.bb.nc5 ./add_var.bb.nc5 ./buftype_free.bb.nc5 ./last_large_var.bb.nc5 ./check_type.bb.nc5 ./test_erange.bb.nc5 ./scalar.bb.nc5 ./null_args.bb.nc5 ./tst_dimsizes.bb.nc5 ./mix_collectives.bb.nc5 ./large_var_cdf5.bb.nc5 ./tst_max_var_dims.bb.nc5 ./tst_info.bb.nc5 ./tst_vars_fill.bb.nc5 ./tst_def_var_fill.bb.nc5 ./test_fillvalue.bb.nc5 ./error_precedence.bb.nc5 ./tst_free_comm.bb.nc5 ./erange_fill.bb.nc5 ./varn_intf.bb.nc5 ./attrf.bb.nc5 ./buftype_freef.bb.nc5 ./put_parameter.bb.nc5 ./test_vardf.bb.nc5 ./inq_num_varsf.bb.nc5 ./inq_recsizef.bb.nc5 ./test_vardf90.bb.nc5 ./varn_real.bb.nc5 ./put_all_kinds.bb.nc5 ./redef1.bb.nc5 ./iput_all_kinds.bb.nc5 ./tst_version.bb.nc5" || rm -f put_all_kinds.c erange_fill.c tst_vars_fill.c iput_all_kinds.c error_precedence.c null_args.c core core.* *.gcda *.gcno *.gcov gmon.out ./redef1.nc ./redef1.bb.nc ./redef2.nc ./tst_pthread.nc.* ./testfile.nc* ./ncmpi_vars_null_stride.nc ./vectors.nc ./collective_error.nc ./test_varm.nc ./alignment_test.nc ./flexible.nc ./flexible2.nc ./flexible_varm.nc ./nonblocking.nc ./noclobber.nc ./record.nc ./inq_num_vars.nc ./varn_int.nc ./modes.nc ./one_record.nc ./inq_recsize.nc ./test_vard.nc ./test_vard_rec.nc ./test_vard_multiple.nc ./varn_contig.nc ./ivarn.nc ./check_striping.nc ./add_var.nc ./buftype_free.nc ./last_large_var.nc ./check_type.nc ./test_erange.nc ./scalar.nc ./null_args.nc ./tst_dimsizes.nc ./mix_collectives.nc ./large_var_cdf5.nc ./tst_max_var_dims.nc ./tst_info.nc ./tst_vars_fill.nc ./tst_def_var_fill.nc ./test_fillvalue.nc ./error_precedence.nc ./tst_free_comm.nc ./erange_fill.nc ./varn_intf.nc ./attrf.nc ./buftype_freef.nc ./put_parameter.nc ./test_vardf.nc ./inq_num_varsf.nc ./inq_recsizef.nc ./test_vardf90.nc ./varn_real.nc ./put_all_kinds.nc ./redef1.nc ./iput_all_kinds.nc ./tst_version.nc ./ncmpi_vars_null_stride.nc1 ./vectors.nc1 ./collective_error.nc1 ./test_varm.nc1 ./alignment_test.nc1 ./flexible.nc1 ./flexible2.nc1 ./flexible_varm.nc1 ./nonblocking.nc1 ./noclobber.nc1 ./record.nc1 ./inq_num_vars.nc1 ./varn_int.nc1 ./modes.nc1 ./one_record.nc1 ./inq_recsize.nc1 ./test_vard.nc1 ./test_vard_rec.nc1 ./test_vard_multiple.nc1 ./varn_contig.nc1 ./ivarn.nc1 ./check_striping.nc1 ./add_var.nc1 ./buftype_free.nc1 ./last_large_var.nc1 ./check_type.nc1 ./test_erange.nc1 ./scalar.nc1 ./null_args.nc1 ./tst_dimsizes.nc1 ./mix_collectives.nc1 ./large_var_cdf5.nc1 ./tst_max_var_dims.nc1 ./tst_info.nc1 ./tst_vars_fill.nc1 ./tst_def_var_fill.nc1 ./test_fillvalue.nc1 ./error_precedence.nc1 ./tst_free_comm.nc1 ./erange_fill.nc1 ./varn_intf.nc1 ./attrf.nc1 ./buftype_freef.nc1 ./put_parameter.nc1 ./test_vardf.nc1 ./inq_num_varsf.nc1 ./inq_recsizef.nc1 ./test_vardf90.nc1 ./varn_real.nc1 ./put_all_kinds.nc1 ./redef1.nc1 ./iput_all_kinds.nc1 ./tst_version.nc1 ./ncmpi_vars_null_stride.nc2 ./vectors.nc2 ./collective_error.nc2 ./test_varm.nc2 ./alignment_test.nc2 ./flexible.nc2 ./flexible2.nc2 ./flexible_varm.nc2 ./nonblocking.nc2 ./noclobber.nc2 ./record.nc2 ./inq_num_vars.nc2 ./varn_int.nc2 ./modes.nc2 ./one_record.nc2 ./inq_recsize.nc2 ./test_vard.nc2 ./test_vard_rec.nc2 ./test_vard_multiple.nc2 ./varn_contig.nc2 ./ivarn.nc2 ./check_striping.nc2 ./add_var.nc2 ./buftype_free.nc2 ./last_large_var.nc2 ./check_type.nc2 ./test_erange.nc2 ./scalar.nc2 ./null_args.nc2 ./tst_dimsizes.nc2 ./mix_collectives.nc2 ./large_var_cdf5.nc2 ./tst_max_var_dims.nc2 ./tst_info.nc2 ./tst_vars_fill.nc2 ./tst_def_var_fill.nc2 ./test_fillvalue.nc2 ./error_precedence.nc2 ./tst_free_comm.nc2 ./erange_fill.nc2 ./varn_intf.nc2 ./attrf.nc2 ./buftype_freef.nc2 ./put_parameter.nc2 ./test_vardf.nc2 ./inq_num_varsf.nc2 ./inq_recsizef.nc2 ./test_vardf90.nc2 ./varn_real.nc2 ./put_all_kinds.nc2 ./redef1.nc2 ./iput_all_kinds.nc2 ./tst_version.nc2 ./ncmpi_vars_null_stride.nc3 ./vectors.nc3 ./collective_error.nc3 ./test_varm.nc3 ./alignment_test.nc3 ./flexible.nc3 ./flexible2.nc3 ./flexible_varm.nc3 ./nonblocking.nc3 ./noclobber.nc3 ./record.nc3 ./inq_num_vars.nc3 ./varn_int.nc3 ./modes.nc3 ./one_record.nc3 ./inq_recsize.nc3 ./test_vard.nc3 ./test_vard_rec.nc3 ./test_vard_multiple.nc3 ./varn_contig.nc3 ./ivarn.nc3 ./check_striping.nc3 ./add_var.nc3 ./buftype_free.nc3 ./last_large_var.nc3 ./check_type.nc3 ./test_erange.nc3 ./scalar.nc3 ./null_args.nc3 ./tst_dimsizes.nc3 ./mix_collectives.nc3 ./large_var_cdf5.nc3 ./tst_max_var_dims.nc3 ./tst_info.nc3 ./tst_vars_fill.nc3 ./tst_def_var_fill.nc3 ./test_fillvalue.nc3 ./error_precedence.nc3 ./tst_free_comm.nc3 ./erange_fill.nc3 ./varn_intf.nc3 ./attrf.nc3 ./buftype_freef.nc3 ./put_parameter.nc3 ./test_vardf.nc3 ./inq_num_varsf.nc3 ./inq_recsizef.nc3 ./test_vardf90.nc3 ./varn_real.nc3 ./put_all_kinds.nc3 ./redef1.nc3 ./iput_all_kinds.nc3 ./tst_version.nc3 ./ncmpi_vars_null_stride.nc4 ./vectors.nc4 ./collective_error.nc4 ./test_varm.nc4 ./alignment_test.nc4 ./flexible.nc4 ./flexible2.nc4 ./flexible_varm.nc4 ./nonblocking.nc4 ./noclobber.nc4 ./record.nc4 ./inq_num_vars.nc4 ./varn_int.nc4 ./modes.nc4 ./one_record.nc4 ./inq_recsize.nc4 ./test_vard.nc4 ./test_vard_rec.nc4 ./test_vard_multiple.nc4 ./varn_contig.nc4 ./ivarn.nc4 ./check_striping.nc4 ./add_var.nc4 ./buftype_free.nc4 ./last_large_var.nc4 ./check_type.nc4 ./test_erange.nc4 ./scalar.nc4 ./null_args.nc4 ./tst_dimsizes.nc4 ./mix_collectives.nc4 ./large_var_cdf5.nc4 ./tst_max_var_dims.nc4 ./tst_info.nc4 ./tst_vars_fill.nc4 ./tst_def_var_fill.nc4 ./test_fillvalue.nc4 ./error_precedence.nc4 ./tst_free_comm.nc4 ./erange_fill.nc4 ./varn_intf.nc4 ./attrf.nc4 ./buftype_freef.nc4 ./put_parameter.nc4 ./test_vardf.nc4 ./inq_num_varsf.nc4 ./inq_recsizef.nc4 ./test_vardf90.nc4 ./varn_real.nc4 ./put_all_kinds.nc4 ./redef1.nc4 ./iput_all_kinds.nc4 ./tst_version.nc4 ./ncmpi_vars_null_stride.nc5 ./vectors.nc5 ./collective_error.nc5 ./test_varm.nc5 ./alignment_test.nc5 ./flexible.nc5 ./flexible2.nc5 ./flexible_varm.nc5 ./nonblocking.nc5 ./noclobber.nc5 ./record.nc5 ./inq_num_vars.nc5 ./varn_int.nc5 ./modes.nc5 ./one_record.nc5 ./inq_recsize.nc5 ./test_vard.nc5 ./test_vard_rec.nc5 ./test_vard_multiple.nc5 ./varn_contig.nc5 ./ivarn.nc5 ./check_striping.nc5 ./add_var.nc5 ./buftype_free.nc5 ./last_large_var.nc5 ./check_type.nc5 ./test_erange.nc5 ./scalar.nc5 ./null_args.nc5 ./tst_dimsizes.nc5 ./mix_collectives.nc5 ./large_var_cdf5.nc5 ./tst_max_var_dims.nc5 ./tst_info.nc5 ./tst_vars_fill.nc5 ./tst_def_var_fill.nc5 ./test_fillvalue.nc5 ./error_precedence.nc5 ./tst_free_comm.nc5 ./erange_fill.nc5 ./varn_intf.nc5 ./attrf.nc5 ./buftype_freef.nc5 ./put_parameter.nc5 ./test_vardf.nc5 ./inq_num_varsf.nc5 ./inq_recsizef.nc5 ./test_vardf90.nc5 ./varn_real.nc5 ./put_all_kinds.nc5 ./redef1.nc5 ./iput_all_kinds.nc5 ./tst_version.nc5 ./ncmpi_vars_null_stride.bb.nc ./vectors.bb.nc ./collective_error.bb.nc ./test_varm.bb.nc ./alignment_test.bb.nc ./flexible.bb.nc ./flexible2.bb.nc ./flexible_varm.bb.nc ./nonblocking.bb.nc ./noclobber.bb.nc ./record.bb.nc ./inq_num_vars.bb.nc ./varn_int.bb.nc ./modes.bb.nc ./one_record.bb.nc ./inq_recsize.bb.nc ./test_vard.bb.nc ./test_vard_rec.bb.nc ./test_vard_multiple.bb.nc ./varn_contig.bb.nc ./ivarn.bb.nc ./check_striping.bb.nc ./add_var.bb.nc ./buftype_free.bb.nc ./last_large_var.bb.nc ./check_type.bb.nc ./test_erange.bb.nc ./scalar.bb.nc ./null_args.bb.nc ./tst_dimsizes.bb.nc ./mix_collectives.bb.nc ./large_var_cdf5.bb.nc ./tst_max_var_dims.bb.nc ./tst_info.bb.nc ./tst_vars_fill.bb.nc ./tst_def_var_fill.bb.nc ./test_fillvalue.bb.nc ./error_precedence.bb.nc ./tst_free_comm.bb.nc ./erange_fill.bb.nc ./varn_intf.bb.nc ./attrf.bb.nc ./buftype_freef.bb.nc ./put_parameter.bb.nc ./test_vardf.bb.nc ./inq_num_varsf.bb.nc ./inq_recsizef.bb.nc ./test_vardf90.bb.nc ./varn_real.bb.nc ./put_all_kinds.bb.nc ./redef1.bb.nc ./iput_all_kinds.bb.nc ./tst_version.bb.nc ./ncmpi_vars_null_stride.bb.nc1 ./vectors.bb.nc1 ./collective_error.bb.nc1 ./test_varm.bb.nc1 ./alignment_test.bb.nc1 ./flexible.bb.nc1 ./flexible2.bb.nc1 ./flexible_varm.bb.nc1 ./nonblocking.bb.nc1 ./noclobber.bb.nc1 ./record.bb.nc1 ./inq_num_vars.bb.nc1 ./varn_int.bb.nc1 ./modes.bb.nc1 ./one_record.bb.nc1 ./inq_recsize.bb.nc1 ./test_vard.bb.nc1 ./test_vard_rec.bb.nc1 ./test_vard_multiple.bb.nc1 ./varn_contig.bb.nc1 ./ivarn.bb.nc1 ./check_striping.bb.nc1 ./add_var.bb.nc1 ./buftype_free.bb.nc1 ./last_large_var.bb.nc1 ./check_type.bb.nc1 ./test_erange.bb.nc1 ./scalar.bb.nc1 ./null_args.bb.nc1 ./tst_dimsizes.bb.nc1 ./mix_collectives.bb.nc1 ./large_var_cdf5.bb.nc1 ./tst_max_var_dims.bb.nc1 ./tst_info.bb.nc1 ./tst_vars_fill.bb.nc1 ./tst_def_var_fill.bb.nc1 ./test_fillvalue.bb.nc1 ./error_precedence.bb.nc1 ./tst_free_comm.bb.nc1 ./erange_fill.bb.nc1 ./varn_intf.bb.nc1 ./attrf.bb.nc1 ./buftype_freef.bb.nc1 ./put_parameter.bb.nc1 ./test_vardf.bb.nc1 ./inq_num_varsf.bb.nc1 ./inq_recsizef.bb.nc1 ./test_vardf90.bb.nc1 ./varn_real.bb.nc1 ./put_all_kinds.bb.nc1 ./redef1.bb.nc1 ./iput_all_kinds.bb.nc1 ./tst_version.bb.nc1 ./ncmpi_vars_null_stride.bb.nc2 ./vectors.bb.nc2 ./collective_error.bb.nc2 ./test_varm.bb.nc2 ./alignment_test.bb.nc2 ./flexible.bb.nc2 ./flexible2.bb.nc2 ./flexible_varm.bb.nc2 ./nonblocking.bb.nc2 ./noclobber.bb.nc2 ./record.bb.nc2 ./inq_num_vars.bb.nc2 ./varn_int.bb.nc2 ./modes.bb.nc2 ./one_record.bb.nc2 ./inq_recsize.bb.nc2 ./test_vard.bb.nc2 ./test_vard_rec.bb.nc2 ./test_vard_multiple.bb.nc2 ./varn_contig.bb.nc2 ./ivarn.bb.nc2 ./check_striping.bb.nc2 ./add_var.bb.nc2 ./buftype_free.bb.nc2 ./last_large_var.bb.nc2 ./check_type.bb.nc2 ./test_erange.bb.nc2 ./scalar.bb.nc2 ./null_args.bb.nc2 ./tst_dimsizes.bb.nc2 ./mix_collectives.bb.nc2 ./large_var_cdf5.bb.nc2 ./tst_max_var_dims.bb.nc2 ./tst_info.bb.nc2 ./tst_vars_fill.bb.nc2 ./tst_def_var_fill.bb.nc2 ./test_fillvalue.bb.nc2 ./error_precedence.bb.nc2 ./tst_free_comm.bb.nc2 ./erange_fill.bb.nc2 ./varn_intf.bb.nc2 ./attrf.bb.nc2 ./buftype_freef.bb.nc2 ./put_parameter.bb.nc2 ./test_vardf.bb.nc2 ./inq_num_varsf.bb.nc2 ./inq_recsizef.bb.nc2 ./test_vardf90.bb.nc2 ./varn_real.bb.nc2 ./put_all_kinds.bb.nc2 ./redef1.bb.nc2 ./iput_all_kinds.bb.nc2 ./tst_version.bb.nc2 ./ncmpi_vars_null_stride.bb.nc3 ./vectors.bb.nc3 ./collective_error.bb.nc3 ./test_varm.bb.nc3 ./alignment_test.bb.nc3 ./flexible.bb.nc3 ./flexible2.bb.nc3 ./flexible_varm.bb.nc3 ./nonblocking.bb.nc3 ./noclobber.bb.nc3 ./record.bb.nc3 ./inq_num_vars.bb.nc3 ./varn_int.bb.nc3 ./modes.bb.nc3 ./one_record.bb.nc3 ./inq_recsize.bb.nc3 ./test_vard.bb.nc3 ./test_vard_rec.bb.nc3 ./test_vard_multiple.bb.nc3 ./varn_contig.bb.nc3 ./ivarn.bb.nc3 ./check_striping.bb.nc3 ./add_var.bb.nc3 ./buftype_free.bb.nc3 ./last_large_var.bb.nc3 ./check_type.bb.nc3 ./test_erange.bb.nc3 ./scalar.bb.nc3 ./null_args.bb.nc3 ./tst_dimsizes.bb.nc3 ./mix_collectives.bb.nc3 ./large_var_cdf5.bb.nc3 ./tst_max_var_dims.bb.nc3 ./tst_info.bb.nc3 ./tst_vars_fill.bb.nc3 ./tst_def_var_fill.bb.nc3 ./test_fillvalue.bb.nc3 ./error_precedence.bb.nc3 ./tst_free_comm.bb.nc3 ./erange_fill.bb.nc3 ./varn_intf.bb.nc3 ./attrf.bb.nc3 ./buftype_freef.bb.nc3 ./put_parameter.bb.nc3 ./test_vardf.bb.nc3 ./inq_num_varsf.bb.nc3 ./inq_recsizef.bb.nc3 ./test_vardf90.bb.nc3 ./varn_real.bb.nc3 ./put_all_kinds.bb.nc3 ./redef1.bb.nc3 ./iput_all_kinds.bb.nc3 ./tst_version.bb.nc3 ./ncmpi_vars_null_stride.bb.nc4 ./vectors.bb.nc4 ./collective_error.bb.nc4 ./test_varm.bb.nc4 ./alignment_test.bb.nc4 ./flexible.bb.nc4 ./flexible2.bb.nc4 ./flexible_varm.bb.nc4 ./nonblocking.bb.nc4 ./noclobber.bb.nc4 ./record.bb.nc4 ./inq_num_vars.bb.nc4 ./varn_int.bb.nc4 ./modes.bb.nc4 ./one_record.bb.nc4 ./inq_recsize.bb.nc4 ./test_vard.bb.nc4 ./test_vard_rec.bb.nc4 ./test_vard_multiple.bb.nc4 ./varn_contig.bb.nc4 ./ivarn.bb.nc4 ./check_striping.bb.nc4 ./add_var.bb.nc4 ./buftype_free.bb.nc4 ./last_large_var.bb.nc4 ./check_type.bb.nc4 ./test_erange.bb.nc4 ./scalar.bb.nc4 ./null_args.bb.nc4 ./tst_dimsizes.bb.nc4 ./mix_collectives.bb.nc4 ./large_var_cdf5.bb.nc4 ./tst_max_var_dims.bb.nc4 ./tst_info.bb.nc4 ./tst_vars_fill.bb.nc4 ./tst_def_var_fill.bb.nc4 ./test_fillvalue.bb.nc4 ./error_precedence.bb.nc4 ./tst_free_comm.bb.nc4 ./erange_fill.bb.nc4 ./varn_intf.bb.nc4 ./attrf.bb.nc4 ./buftype_freef.bb.nc4 ./put_parameter.bb.nc4 ./test_vardf.bb.nc4 ./inq_num_varsf.bb.nc4 ./inq_recsizef.bb.nc4 ./test_vardf90.bb.nc4 ./varn_real.bb.nc4 ./put_all_kinds.bb.nc4 ./redef1.bb.nc4 ./iput_all_kinds.bb.nc4 ./tst_version.bb.nc4 ./ncmpi_vars_null_stride.bb.nc5 ./vectors.bb.nc5 ./collective_error.bb.nc5 ./test_varm.bb.nc5 ./alignment_test.bb.nc5 ./flexible.bb.nc5 ./flexible2.bb.nc5 ./flexible_varm.bb.nc5 ./nonblocking.bb.nc5 ./noclobber.bb.nc5 ./record.bb.nc5 ./inq_num_vars.bb.nc5 ./varn_int.bb.nc5 ./modes.bb.nc5 ./one_record.bb.nc5 ./inq_recsize.bb.nc5 ./test_vard.bb.nc5 ./test_vard_rec.bb.nc5 ./test_vard_multiple.bb.nc5 ./varn_contig.bb.nc5 ./ivarn.bb.nc5 ./check_striping.bb.nc5 ./add_var.bb.nc5 ./buftype_free.bb.nc5 ./last_large_var.bb.nc5 ./check_type.bb.nc5 ./test_erange.bb.nc5 ./scalar.bb.nc5 ./null_args.bb.nc5 ./tst_dimsizes.bb.nc5 ./mix_collectives.bb.nc5 ./large_var_cdf5.bb.nc5 ./tst_max_var_dims.bb.nc5 ./tst_info.bb.nc5 ./tst_vars_fill.bb.nc5 ./tst_def_var_fill.bb.nc5 ./test_fillvalue.bb.nc5 ./error_precedence.bb.nc5 ./tst_free_comm.bb.nc5 ./erange_fill.bb.nc5 ./varn_intf.bb.nc5 ./attrf.bb.nc5 ./buftype_freef.bb.nc5 ./put_parameter.bb.nc5 ./test_vardf.bb.nc5 ./inq_num_varsf.bb.nc5 ./inq_recsizef.bb.nc5 ./test_vardf90.bb.nc5 ./varn_real.bb.nc5 ./put_all_kinds.bb.nc5 ./redef1.bb.nc5 ./iput_all_kinds.bb.nc5 ./tst_version.bb.nc5 rm -rf .libs _libs rm -f *.o test -z "ncmpi_vars_null_stride.log vectors.log collective_error.log test_varm.log alignment_test.log flexible.log flexible2.log flexible_varm.log nonblocking.log noclobber.log record.log inq_num_vars.log varn_int.log modes.log one_record.log inq_recsize.log test_vard.log test_vard_rec.log test_vard_multiple.log varn_contig.log ivarn.log check_striping.log add_var.log buftype_free.log last_large_var.log check_type.log test_erange.log scalar.log null_args.log tst_dimsizes.log mix_collectives.log large_var_cdf5.log tst_max_var_dims.log tst_info.log tst_vars_fill.log tst_def_var_fill.log test_fillvalue.log error_precedence.log tst_free_comm.log erange_fill.log varn_intf.log attrf.log buftype_freef.log put_parameter.log test_vardf.log inq_num_varsf.log inq_recsizef.log test_vardf90.log varn_real.log seq_runs.log" || rm -f ncmpi_vars_null_stride.log vectors.log collective_error.log test_varm.log alignment_test.log flexible.log flexible2.log flexible_varm.log nonblocking.log noclobber.log record.log inq_num_vars.log varn_int.log modes.log one_record.log inq_recsize.log test_vard.log test_vard_rec.log test_vard_multiple.log varn_contig.log ivarn.log check_striping.log add_var.log buftype_free.log last_large_var.log check_type.log test_erange.log scalar.log null_args.log tst_dimsizes.log mix_collectives.log large_var_cdf5.log tst_max_var_dims.log tst_info.log tst_vars_fill.log tst_def_var_fill.log test_fillvalue.log error_precedence.log tst_free_comm.log erange_fill.log varn_intf.log attrf.log buftype_freef.log put_parameter.log test_vardf.log inq_num_varsf.log inq_recsizef.log test_vardf90.log varn_real.log seq_runs.log test -z "ncmpi_vars_null_stride.trs vectors.trs collective_error.trs test_varm.trs alignment_test.trs flexible.trs flexible2.trs flexible_varm.trs nonblocking.trs noclobber.trs record.trs inq_num_vars.trs varn_int.trs modes.trs one_record.trs inq_recsize.trs test_vard.trs test_vard_rec.trs test_vard_multiple.trs varn_contig.trs ivarn.trs check_striping.trs add_var.trs buftype_free.trs last_large_var.trs check_type.trs test_erange.trs scalar.trs null_args.trs tst_dimsizes.trs mix_collectives.trs large_var_cdf5.trs tst_max_var_dims.trs tst_info.trs tst_vars_fill.trs tst_def_var_fill.trs test_fillvalue.trs error_precedence.trs tst_free_comm.trs erange_fill.trs varn_intf.trs attrf.trs buftype_freef.trs put_parameter.trs test_vardf.trs inq_num_varsf.trs inq_recsizef.trs test_vardf90.trs varn_real.trs seq_runs.trs" || rm -f ncmpi_vars_null_stride.trs vectors.trs collective_error.trs test_varm.trs alignment_test.trs flexible.trs flexible2.trs flexible_varm.trs nonblocking.trs noclobber.trs record.trs inq_num_vars.trs varn_int.trs modes.trs one_record.trs inq_recsize.trs test_vard.trs test_vard_rec.trs test_vard_multiple.trs varn_contig.trs ivarn.trs check_striping.trs add_var.trs buftype_free.trs last_large_var.trs check_type.trs test_erange.trs scalar.trs null_args.trs tst_dimsizes.trs mix_collectives.trs large_var_cdf5.trs tst_max_var_dims.trs tst_info.trs tst_vars_fill.trs tst_def_var_fill.trs test_fillvalue.trs error_precedence.trs tst_free_comm.trs erange_fill.trs varn_intf.trs attrf.trs buftype_freef.trs put_parameter.trs test_vardf.trs inq_num_varsf.trs inq_recsizef.trs test_vardf90.trs varn_real.trs seq_runs.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/testcases' Making clean in nonblocking make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nonblocking' rm -f test_bput interleaved i_varn_int64 flexible_bput wait_after_indep req_all i_varn_indef large_num_reqs bput_varn column_wise mcoll_testf77 test_bputf77 mcoll_testf test_bputf mcoll_perf test -z "bput_varn.c column_wise.c core core.* *.gcda *.gcno *.gcov gmon.out ./testfile*.nc ./test_bput.nc ./interleaved.nc ./i_varn_int64.nc ./flexible_bput.nc ./wait_after_indep.nc ./req_all.nc ./i_varn_indef.nc ./large_num_reqs.nc ./bput_varn.nc ./column_wise.nc ./mcoll_testf77.nc ./test_bputf77.nc ./mcoll_testf.nc ./test_bputf.nc ./test_bput.bb.nc ./interleaved.bb.nc ./i_varn_int64.bb.nc ./flexible_bput.bb.nc ./wait_after_indep.bb.nc ./req_all.bb.nc ./i_varn_indef.bb.nc ./large_num_reqs.bb.nc ./bput_varn.bb.nc ./column_wise.bb.nc ./mcoll_testf77.bb.nc ./test_bputf77.bb.nc ./mcoll_testf.bb.nc ./test_bputf.bb.nc ./mcoll_perf.nc.* ./mcoll_perf.bb.nc.*" || rm -f bput_varn.c column_wise.c core core.* *.gcda *.gcno *.gcov gmon.out ./testfile*.nc ./test_bput.nc ./interleaved.nc ./i_varn_int64.nc ./flexible_bput.nc ./wait_after_indep.nc ./req_all.nc ./i_varn_indef.nc ./large_num_reqs.nc ./bput_varn.nc ./column_wise.nc ./mcoll_testf77.nc ./test_bputf77.nc ./mcoll_testf.nc ./test_bputf.nc ./test_bput.bb.nc ./interleaved.bb.nc ./i_varn_int64.bb.nc ./flexible_bput.bb.nc ./wait_after_indep.bb.nc ./req_all.bb.nc ./i_varn_indef.bb.nc ./large_num_reqs.bb.nc ./bput_varn.bb.nc ./column_wise.bb.nc ./mcoll_testf77.bb.nc ./test_bputf77.bb.nc ./mcoll_testf.bb.nc ./test_bputf.bb.nc ./mcoll_perf.nc.* ./mcoll_perf.bb.nc.* rm -rf .libs _libs rm -f *.o test -z "test_bput.log interleaved.log i_varn_int64.log flexible_bput.log wait_after_indep.log req_all.log i_varn_indef.log large_num_reqs.log bput_varn.log column_wise.log mcoll_testf77.log test_bputf77.log mcoll_testf.log test_bputf.log seq_runs.log" || rm -f test_bput.log interleaved.log i_varn_int64.log flexible_bput.log wait_after_indep.log req_all.log i_varn_indef.log large_num_reqs.log bput_varn.log column_wise.log mcoll_testf77.log test_bputf77.log mcoll_testf.log test_bputf.log seq_runs.log test -z "test_bput.trs interleaved.trs i_varn_int64.trs flexible_bput.trs wait_after_indep.trs req_all.trs i_varn_indef.trs large_num_reqs.trs bput_varn.trs column_wise.trs mcoll_testf77.trs test_bputf77.trs mcoll_testf.trs test_bputf.trs seq_runs.trs" || rm -f test_bput.trs interleaved.trs i_varn_int64.trs flexible_bput.trs wait_after_indep.trs req_all.trs i_varn_indef.trs large_num_reqs.trs bput_varn.trs column_wise.trs mcoll_testf77.trs test_bputf77.trs mcoll_testf.trs test_bputf.trs seq_runs.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nonblocking' Making clean in CXX make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/CXX' rm -f nctst test_classic test -z "./nctst.nc ./test_classic.nc ./nctst.bb.nc ./test_classic.bb.nc core core.* *.gcda *.gcno *.gcov gmon.out a.out" || rm -f ./nctst.nc ./test_classic.nc ./nctst.bb.nc ./test_classic.bb.nc core core.* *.gcda *.gcno *.gcov gmon.out a.out rm -rf .libs _libs rm -f *.o test -z "nctst.log test_classic.log" || rm -f nctst.log test_classic.log test -z "nctst.trs test_classic.trs" || rm -f nctst.trs test_classic.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/CXX' Making clean in nf_test make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nf_test' rm -f nf_test test -z "test_get.F test_put.F test_iget.F test_iput.F ./scratch.nc ./test.nc ./tooth-fairy.nc core core.* *.gcda *.gcno *.gcov gmon.out" || rm -f test_get.F test_put.F test_iget.F test_iput.F ./scratch.nc ./test.nc ./tooth-fairy.nc core core.* *.gcda *.gcno *.gcov gmon.out rm -rf .libs _libs rm -f *.o test -z "seq_runs.log" || rm -f seq_runs.log test -z "seq_runs.trs" || rm -f seq_runs.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nf_test' Making clean in nf90_test make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nf90_test' rm -f nf90_test test -z "test_get.F90 test_put.F90 test_iget.F90 test_iput.F90 ./scratch.nc ./test.nc ./tooth-fairy.nc core core.* *.gcda *.gcno *.gcov gmon.out" || rm -f test_get.F90 test_put.F90 test_iget.F90 test_iput.F90 ./scratch.nc ./test.nc ./tooth-fairy.nc core core.* *.gcda *.gcno *.gcov gmon.out rm -rf .libs _libs rm -f *.o test -z "seq_runs.log" || rm -f seq_runs.log test -z "seq_runs.trs" || rm -f seq_runs.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nf90_test' Making clean in F90 make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/F90' rm -f tst_f90 f90tst_vars tst_types2 tst_f90_cdf5 f90tst_vars2 f90tst_vars3 f90tst_vars4 test_intent test_attr_int64 test_fill f90tst_parallel f90tst_parallel2 f90tst_parallel3 f90tst_parallel4 tst_io test -z "*.mod core core.* *.gcda *.gcno *.gcov gmon.out ./tst_io1.nc ./tst_io1.nc0 ./testfile.nc ./tst_f90.nc ./f90tst_vars.nc ./tst_types2.nc ./tst_f90_cdf5.nc ./f90tst_vars2.nc ./f90tst_vars3.nc ./f90tst_vars4.nc ./test_intent.nc ./test_attr_int64.nc ./test_fill.nc ./f90tst_parallel.nc ./f90tst_parallel2.nc ./f90tst_parallel3.nc ./f90tst_parallel4.nc ./tst_io.nc ./tst_f90.bb.nc ./f90tst_vars.bb.nc ./tst_types2.bb.nc ./tst_f90_cdf5.bb.nc ./f90tst_vars2.bb.nc ./f90tst_vars3.bb.nc ./f90tst_vars4.bb.nc ./test_intent.bb.nc ./test_attr_int64.bb.nc ./test_fill.bb.nc ./f90tst_parallel.bb.nc ./f90tst_parallel2.bb.nc ./f90tst_parallel3.bb.nc ./f90tst_parallel4.bb.nc ./tst_io.bb.nc" || rm -f *.mod core core.* *.gcda *.gcno *.gcov gmon.out ./tst_io1.nc ./tst_io1.nc0 ./testfile.nc ./tst_f90.nc ./f90tst_vars.nc ./tst_types2.nc ./tst_f90_cdf5.nc ./f90tst_vars2.nc ./f90tst_vars3.nc ./f90tst_vars4.nc ./test_intent.nc ./test_attr_int64.nc ./test_fill.nc ./f90tst_parallel.nc ./f90tst_parallel2.nc ./f90tst_parallel3.nc ./f90tst_parallel4.nc ./tst_io.nc ./tst_f90.bb.nc ./f90tst_vars.bb.nc ./tst_types2.bb.nc ./tst_f90_cdf5.bb.nc ./f90tst_vars2.bb.nc ./f90tst_vars3.bb.nc ./f90tst_vars4.bb.nc ./test_intent.bb.nc ./test_attr_int64.bb.nc ./test_fill.bb.nc ./f90tst_parallel.bb.nc ./f90tst_parallel2.bb.nc ./f90tst_parallel3.bb.nc ./f90tst_parallel4.bb.nc ./tst_io.bb.nc rm -rf .libs _libs rm -f *.o test -z "tst_f90.log f90tst_vars.log tst_types2.log tst_f90_cdf5.log f90tst_vars2.log f90tst_vars3.log f90tst_vars4.log test_intent.log test_attr_int64.log test_fill.log seq_runs.log" || rm -f tst_f90.log f90tst_vars.log tst_types2.log tst_f90_cdf5.log f90tst_vars2.log f90tst_vars3.log f90tst_vars4.log test_intent.log test_attr_int64.log test_fill.log seq_runs.log test -z "tst_f90.trs f90tst_vars.trs tst_types2.trs tst_f90_cdf5.trs f90tst_vars2.trs f90tst_vars3.trs f90tst_vars4.trs test_intent.trs test_attr_int64.trs test_fill.trs seq_runs.trs" || rm -f tst_f90.trs f90tst_vars.trs tst_types2.trs tst_f90_cdf5.trs f90tst_vars2.trs f90tst_vars3.trs f90tst_vars4.trs test_intent.trs test_attr_int64.trs test_fill.trs seq_runs.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/F90' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test' rm -rf .libs _libs rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test' make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1' rm -rf .libs _libs rm -f *.lo make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1'Making all in src make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src' Making all in include make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/include' /usr/bin/make all-am make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/include' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/include' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/include' Making all in dispatchers make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/dispatchers' m4 -DPNETCDF -I../../m4 attr_getput.m4 >attr_getput.c m4 -DPNETCDF -I../../m4 var_getput.m4 >var_getput.c /usr/bin/make all-am make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/dispatchers' CC lib_version.lo CC dimension.lo CC file.lo CC variable.lo CC attribute.lo CC error_codes.lo CC attr_getput.lo CC var_getput.lo CCLD libdispatchers.la make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/dispatchers' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/dispatchers' Making all in drivers make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers' Making all in include make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/include' m4 -DPNETCDF -I../../../m4 ncx_h.m4 >ncx.h /usr/bin/make all-am make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/include' make[4]: Nothing to be done for 'all-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/include' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/include' Making all in common make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/common' m4 -DPNETCDF -I../../../m4 -DERANGE_FILL ncx.m4 >ncx.c m4 -DPNETCDF -I../../../m4 -DERANGE_FILL convert_swap.m4 >convert_swap.c /usr/bin/make all-am make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/common' CC utf8proc.lo CC mem_alloc.lo CC dtype_decode.lo CC create_imaptype.lo CC error_mpi2nc.lo CC check_name.lo CC pack_unpack.lo CC utils.lo CC error_posix2nc.lo CC hash_map.lo CC ncx.lo CC convert_swap.lo CCLD libcommon.la make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/common' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/common' Making all in ncmpio make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/ncmpio' m4 -DPNETCDF -I../../../m4 -DERANGE_FILL ncmpio_getput.m4 >ncmpio_getput.c m4 -DPNETCDF -I../../../m4 -DERANGE_FILL ncmpio_i_getput.m4 >ncmpio_i_getput.c m4 -DPNETCDF -I../../../m4 -DERANGE_FILL ncmpio_varn.m4 >ncmpio_varn.c m4 -DPNETCDF -I../../../m4 -DERANGE_FILL ncmpio_i_varn.m4 >ncmpio_i_varn.c m4 -DPNETCDF -I../../../m4 -DERANGE_FILL ncmpio_attr.m4 >ncmpio_attr.c /usr/bin/make all-am make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/ncmpio' CC ncmpio_driver.lo CC ncmpio_create.lo CC ncmpio_open.lo CC ncmpio_enddef.lo CC ncmpio_close.lo CC ncmpio_sync.lo CC ncmpio_file_misc.lo CC ncmpio_header_get.lo CC ncmpio_header_put.lo CC ncmpio_dim.lo CC ncmpio_var.lo CC ncmpio_bput.lo CC ncmpio_filetype.lo CC ncmpio_wait.lo CC ncmpio_vard.lo CC ncmpio_fill.lo CC ncmpio_util.lo CC ncmpio_hash_func.lo CC ncmpio_file_io.lo CC ncmpio_getput.lo CC ncmpio_i_getput.lo CC ncmpio_varn.lo CC ncmpio_attr.lo CC ncmpio_i_varn.lo CCLD libncmpio.la make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/ncmpio' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/ncmpio' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers' Making all in binding make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding' Making all in cxx make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/cxx' cat ./pnetcdf.in >pnetcdf set -e; for i in ncmpi_notyet.h ncmpiCheck.h ncmpiType.h ncmpiAtt.h ncmpiEnumType.h ncmpiGroupAtt.h ncmpiGroup.h ncmpiByte.h ncmpiChar.h ncmpiCompoundType.h ncmpiDouble.h ncmpiFloat.h ncmpiInt.h ncmpiInt64.h ncmpiOpaqueType.h ncmpiShort.h ncmpiUbyte.h ncmpiUint.h ncmpiUint64.h ncmpiUshort.h ncmpiException.h ncmpiDim.h ncmpiFile.h ncmpiVarAtt.h ncmpiVar.h ncmpiVlenType.h; do ( \ /bin/sed -e '/#ifndef/d' -e '/#define/d' -e '/#endif/d' -e '/#include/d' ./$i >> pnetcdf ; \ ) ; done /usr/bin/make all-am make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/cxx' CXX ncmpi_notyet.lo CXX ncmpiCheck.lo CXX ncmpiType.lo CXX ncmpiAtt.lo CXX ncmpiEnumType.lo CXX ncmpiGroup.lo CXX ncmpiByte.lo CXX ncmpiGroupAtt.lo CXX ncmpiChar.lo CXX ncmpiCompoundType.lo CXX ncmpiDouble.lo CXX ncmpiFloat.lo CXX ncmpiInt64.lo CXX ncmpiOpaqueType.lo CXX ncmpiUbyte.lo CXX ncmpiInt.lo CXX ncmpiUint.lo CXX ncmpiShort.lo CXX ncmpiUint64.lo CXX ncmpiDim.lo CXX ncmpiUshort.lo CXX ncmpiException.lo CXX ncmpiVarAtt.lo CXX ncmpiFile.lo CXX ncmpiVar.lo CXX ncmpiVlenType.lo CXXLD libcxx.la make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/cxx' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/cxx' Making all in f77 make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/f77' rm -f mpifnetcdf.h issyserrf.c xstrerrorf.c xstrerrnof.c xinq_libversf.c allf.c F77 strerrorf.lo F77 strerrnof.lo F77 inq_libversf.lo ./buildiface -infile=../../../src/include/pnetcdf.h -deffile=./defs > allf.c CC issyserrf.lo CC xstrerrorf.lo CC xstrerrnof.lo CC xinq_libversf.lo CC allf.lo F77LD libf77.la make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/f77' Making all in f90 make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/f90' m4 -DPNETCDF -DINTENTV=INOUT getput_text.m4 >getput_text.fh m4 -DPNETCDF -DINTENTV=INOUT getput_var.m4 >getput_var.fh m4 -DPNETCDF -DINTENTV=INOUT getput_varn.m4 >getput_varn.fh m4 -DPNETCDF -DINTENTV=INOUT getput_vard.m4 >getput_vard.fh /usr/bin/make all-am make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/f90' FC pnetcdf.lo FCLD libf90.la make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/f90' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/f90' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding' Making all in packaging make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/packaging' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/packaging' Making all in . make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src' Making all in libs make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/libs' GEN libpnetcdf.la make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/libs' Making all in utils make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils' Making all in ncmpigen make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncmpigen' CC main.o CC load.o CC escapes.o CC getfill.o CC init.o CC genlib.o CC ncmpigentab.o CCLD ncmpigen make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncmpigen' Making all in ncmpidump make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncmpidump' CC ncmpidump.o CC vardata.o CC dumplib.o CCLD ncmpidump make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncmpidump' Making all in ncmpidiff make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncmpidiff' /usr/bin/gcc -I../../../src/utils/ncvalidator -o cdfdiff cdfdiff.c CC ncmpidiff.o CCLD ncmpidiff make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncmpidiff' Making all in ncvalidator make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncvalidator' /usr/bin/gcc -o ncvalidator ncvalidator.c make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncvalidator' Making all in pnetcdf_version make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/pnetcdf_version' /usr/bin/gcc -DMPICC="\"/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc\"" -DCFLAGS="\"-fstack-protector -O3\"" -DCONFIGURE_ARGS_CLEAN="\"--prefix=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt MAKE=/usr/bin/make --libdir=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib CC=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc CFLAGS=-fstack-protector -O3 AR=/usr/bin/ar ARFLAGS=cr CXX=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx CXXFLAGS=-fstack-protector -O3 F90=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 F90FLAGS=-ffree-line-length-0 -O3 FFLAGS=-ffree-line-length-0 -O3 FC=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 F77=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 FCFLAGS=-ffree-line-length-0 -O3 --enable-shared LIBS=-Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lstdc++ -ldl -lmpifort -lmpi -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath\"" -DPNETCDF_VERSION="\"1.12.1\"" -DMPICXX="\"/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx\"" -DCXXFLAGS="\"-fstack-protector -O3\"" -DMPIF77="\"/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90\"" -DFFLAGS="\"-ffree-line-length-0 -O3\"" -DMPIF90="\"/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90\"" -DFCFLAGS="\"-ffree-line-length-0 -O3\"" -o pnetcdf_version pnetcdf_version.c make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/pnetcdf_version' Making all in ncoffsets make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncoffsets' /usr/bin/gcc -o ncoffsets ncoffsets.c make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncoffsets' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src' Making all in man make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/man' m4 -DPNETCDF -DAPI=C -DPNETCDF_VERSION=1.12.1 pnetcdf.m4 > pnetcdf.3 || rm -f pnetcdf.3 m4 -DPNETCDF -DAPI=F -DPNETCDF_VERSION=1.12.1 pnetcdf.m4 > pnetcdf_f77.3 || rm -f pnetcdf_f77.3 m4 -DPNETCDF -DPNETCDF_VERSION=1.12.1 pnetcdf_f90.m4 > pnetcdf_f90.3 || rm -f pnetcdf_f90.3 make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/man' Making all in examples make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples' Making all in C make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/C' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/C' Making all in tutorial make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/tutorial' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/tutorial' Making all in CXX make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/CXX' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/CXX' Making all in F77 make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/F77' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/F77' Making all in F90 make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/F90' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/F90' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples' Making all in benchmarks make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/benchmarks' Making all in C make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/benchmarks/C' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/benchmarks/C' Making all in FLASH-IO make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/benchmarks/FLASH-IO' PPFC get_mfluid_property.o PPFC flash_release.o PPFC flash_benchmark_io.o PPFC checkpoint_ncmpi_parallel.o PPFC plotfile_ncmpi_parallel.o FCLD flash_benchmark_io make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/benchmarks/FLASH-IO' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/benchmarks' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/benchmarks' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/benchmarks' Making all in test make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test' Making all in common make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/common' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/common' Making all in C make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/C' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/C' Making all in fandc make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/fandc' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/fandc' Making all in nc_test make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nc_test' m4 -DPNETCDF -I../../m4 tests.h.m4 > tests.h /usr/bin/make all-am make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nc_test' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nc_test' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nc_test' Making all in cdf_format make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/cdf_format' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/cdf_format' Making all in header make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/header' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/header' Making all in testcases make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/testcases' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/testcases' Making all in nonblocking make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nonblocking' m4 -DPNETCDF -I../../m4 bput_varn.m4 >bput_varn.c m4 -DPNETCDF -I../../m4 column_wise.m4 >column_wise.c /usr/bin/make all-am make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nonblocking' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nonblocking' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nonblocking' Making all in CXX make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/CXX' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/CXX' Making all in nf_test make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nf_test' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nf_test' Making all in nf90_test make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nf90_test' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nf90_test' Making all in F90 make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/F90' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/F90' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test' make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1' make[1]: Nothing to be done for 'all-am'. make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1'/usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') Making install in src make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src' Making install in include make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/include' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/include' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include' /usr/bin/install -c -m 644 pnetcdf.h '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/include' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/include' Making install in dispatchers make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/dispatchers' /usr/bin/make install-am make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/dispatchers' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/dispatchers' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/dispatchers' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/dispatchers' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/dispatchers' Making install in drivers make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers' Making install in include make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/include' /usr/bin/make install-am make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/include' make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/include' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/include' make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/include' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/include' Making install in common make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/common' /usr/bin/make install-am make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/common' make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/common' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/common' make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/common' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/common' Making install in ncmpio make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/ncmpio' /usr/bin/make install-am make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/ncmpio' make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/ncmpio' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/ncmpio' make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/ncmpio' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers/ncmpio' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/drivers' Making install in binding make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding' Making install in cxx make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/cxx' /usr/bin/make install-am make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/cxx' make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/cxx' make[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include' /usr/bin/install -c -m 644 pnetcdf '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include' make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/cxx' make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/cxx' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/cxx' Making install in f77 make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/f77' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/f77' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include' /usr/bin/install -c -m 644 pnetcdf.inc '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include' make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/f77' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/f77' Making install in f90 make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/f90' /usr/bin/make install-am make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/f90' make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/f90' make[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include' /usr/bin/install -c -m 644 pnetcdf.mod '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include' make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/f90' make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/f90' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding/f90' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/binding' Making install in packaging make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/packaging' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/packaging' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/pkgconfig' /usr/bin/install -c -m 644 pnetcdf.pc '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/pkgconfig' /usr/bin/make install-data-hook make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/packaging' /bin/sed -i'' -e 's|INSTALL_PREFIX|/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt|g ; s|INSTALL_EXEC_PREFIX|/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt|g' /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/pkgconfig/pnetcdf.pc make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/packaging' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/packaging' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/packaging' Making install in . make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src' Making install in libs make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/libs' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/libs' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib' /bin/bash ../../libtool --mode=install /usr/bin/install -c libpnetcdf.la '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib' libtool: install: /usr/bin/install -c .libs/libpnetcdf.so.4.0.1 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libpnetcdf.so.4.0.1 libtool: install: (cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib && { ln -s -f libpnetcdf.so.4.0.1 libpnetcdf.so.4 || { rm -f libpnetcdf.so.4 && ln -s libpnetcdf.so.4.0.1 libpnetcdf.so.4; }; }) libtool: install: (cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib && { ln -s -f libpnetcdf.so.4.0.1 libpnetcdf.so || { rm -f libpnetcdf.so && ln -s libpnetcdf.so.4.0.1 libpnetcdf.so; }; }) libtool: install: /usr/bin/install -c .libs/libpnetcdf.lai /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libpnetcdf.la libtool: install: /usr/bin/install -c .libs/libpnetcdf.a /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libpnetcdf.a libtool: install: chmod 644 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libpnetcdf.a libtool: install: ranlib /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libpnetcdf.a libtool: finish: PATH="/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin:/home/dsu/Soft/PETSc/petsc-3.10.5/linux-gnu-opt/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/home/dsu/Soft/Paraview/ParaView-5.5.0/bin:/home/dsu/Soft/VisIt/visit2_13_0.linux-x86_64/bin:/home/dsu/Soft/Intel/parallel_studio_2019/bin:/home/dsu/Soft/Paraview/ParaView-5.5.0/bin:/home/dsu/Soft/VisIt/visit2_13_0.linux-x86_64/bin:/home/dsu/Soft/Intel/parallel_studio_2019/bin:/sbin" ldconfig -n /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the '-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the 'LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the 'LD_RUN_PATH' environment variable during linking - use the '-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to '/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/libs' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/libs' Making install in utils make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils' Making install in ncmpigen make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncmpigen' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncmpigen' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' /bin/bash ../../../libtool --mode=install /usr/bin/install -c ncmpigen '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' libtool: install: /usr/bin/install -c .libs/ncmpigen /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/ncmpigen /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man1' /usr/bin/install -c -m 644 ncmpigen.1 '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man1' make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncmpigen' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncmpigen' Making install in ncmpidump make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncmpidump' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncmpidump' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' /bin/bash ../../../libtool --mode=install /usr/bin/install -c ncmpidump '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' libtool: install: /usr/bin/install -c .libs/ncmpidump /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/ncmpidump /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man1' /usr/bin/install -c -m 644 ncmpidump.1 '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man1' make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncmpidump' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncmpidump' Making install in ncmpidiff make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncmpidiff' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncmpidiff' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' /bin/bash ../../../libtool --mode=install /usr/bin/install -c ncmpidiff cdfdiff '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' libtool: install: /usr/bin/install -c .libs/ncmpidiff /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/ncmpidiff libtool: install: /usr/bin/install -c cdfdiff /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/cdfdiff /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man1' /usr/bin/install -c -m 644 ncmpidiff.1 cdfdiff.1 '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man1' make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncmpidiff' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncmpidiff' Making install in ncvalidator make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncvalidator' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncvalidator' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' /bin/bash ../../../libtool --mode=install /usr/bin/install -c ncvalidator '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' libtool: install: /usr/bin/install -c ncvalidator /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/ncvalidator /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man1' /usr/bin/install -c -m 644 ncvalidator.1 '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man1' make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncvalidator' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncvalidator' Making install in pnetcdf_version make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/pnetcdf_version' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/pnetcdf_version' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' /bin/bash ../../../libtool --mode=install /usr/bin/install -c pnetcdf_version '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' libtool: install: /usr/bin/install -c pnetcdf_version /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/pnetcdf_version /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man1' /usr/bin/install -c -m 644 pnetcdf_version.1 '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man1' make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/pnetcdf_version' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/pnetcdf_version' Making install in ncoffsets make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncoffsets' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncoffsets' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' /bin/bash ../../../libtool --mode=install /usr/bin/install -c ncoffsets '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' libtool: install: /usr/bin/install -c ncoffsets /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/ncoffsets /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man1' /usr/bin/install -c -m 644 ncoffsets.1 '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man1' make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncoffsets' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils/ncoffsets' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' /usr/bin/install -c pnetcdf-config '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' /usr/bin/make install-exec-hook make[5]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils' /bin/sed -i'' -e 's|INSTALL_PREFIX|/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt|g ; s|INSTALL_EXEC_PREFIX|/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt|g' /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/pnetcdf-config chmod +x /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/pnetcdf-config make[5]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils' make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src/utils' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/src' Making install in man make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/man' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/man' make[2]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3' /usr/bin/install -c -m 644 pnetcdf.3 pnetcdf_f77.3 pnetcdf_f90.3 '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/man' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/man' Making install in examples make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples' Making install in C make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/C' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/C' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/C' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/C' Making install in tutorial make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/tutorial' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/tutorial' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/tutorial' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/tutorial' Making install in CXX make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/CXX' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/CXX' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/CXX' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/CXX' Making install in F77 make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/F77' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/F77' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/F77' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/F77' Making install in F90 make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/F90' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/F90' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/F90' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples/F90' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/examples' Making install in benchmarks make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/benchmarks' Making install in C make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/benchmarks/C' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/benchmarks/C' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/benchmarks/C' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/benchmarks/C' Making install in FLASH-IO make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/benchmarks/FLASH-IO' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/benchmarks/FLASH-IO' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/benchmarks/FLASH-IO' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/benchmarks/FLASH-IO' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/benchmarks' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/benchmarks' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/benchmarks' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/benchmarks' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/benchmarks' Making install in test make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test' Making install in common make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/common' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/common' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/common' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/common' Making install in C make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/C' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/C' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/C' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/C' Making install in fandc make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/fandc' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/fandc' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/fandc' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/fandc' Making install in nc_test make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nc_test' /usr/bin/make install-am make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nc_test' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nc_test' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nc_test' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nc_test' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nc_test' Making install in cdf_format make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/cdf_format' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/cdf_format' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/cdf_format' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/cdf_format' Making install in header make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/header' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/header' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/header' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/header' Making install in testcases make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/testcases' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/testcases' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/testcases' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/testcases' Making install in nonblocking make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nonblocking' /usr/bin/make install-am make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nonblocking' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nonblocking' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nonblocking' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nonblocking' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nonblocking' Making install in CXX make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/CXX' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/CXX' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/CXX' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/CXX' Making install in nf_test make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nf_test' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nf_test' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nf_test' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nf_test' Making install in nf90_test make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nf90_test' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nf90_test' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nf90_test' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/nf90_test' Making install in F90 make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/F90' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/F90' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/F90' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test/F90' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1/test' make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1' make[2]: Nothing to be done for 'install-exec-am'. /usr/bin/make install-data-hook make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1' +----------------------------------------------------------------------------+ | | PnetCDF has been successfully installed under | /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt | | * PnetCDF header files have been installed in | /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include | * PnetCDF library files have been installed in | /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib | * PnetCDF utility programs have been installed in | /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin | * PnetCDF man pages have been installed in | /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man | | To compile your PnetCDF programs, please add the following to the command | line, so the compiler can find the PnetCDF header files: | -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include | | Add the following line to link your program to PnetCDF library: | -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lpnetcdf | | Add the following to your run-time environment variable LD_LIBRARY_PATH, | when linking your executable with the PnetCDF shared libraries. | /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib | | | PnetCDF is jointly developed by a team at Northwestern University and | Argonne National Laboratory. | | Visit PnetCDF project web site for more information | https://parallel-netcdf.github.io | +----------------------------------------------------------------------------+ make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/pnetcdf-1.12.1'********End of Output of running make on PNETCDF ******* Checking for library in Download PNETCDF: ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libpnetcdf.a'] Contents: ['share', 'lib', 'externalpackages', 'include', 'bin'] ================================================================================ TEST check from config.libraries(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [ncmpi_create] in library ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libpnetcdf.a'] ['-lstdc++', '-ldl', '-Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib', '-L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib', '-lmpifort', '-lmpi', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/5', '-L/usr/lib/gcc/x86_64-linux-gnu/5', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib', '-lgfortran', '-lm', '-lgcc_s', '-lquadmath'] Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.libraries/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.packages.valgrind -I/tmp/petsc-oluu3nld/config.packages.MPI -I/tmp/petsc-oluu3nld/config.packages.metis -I/tmp/petsc-oluu3nld/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ncmpi_create(); static void _check_ncmpi_create() { ncmpi_create(); } int main() { _check_ncmpi_create();; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -o /tmp/petsc-oluu3nld/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.o -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lpnetcdf -lstdc++ -ldl -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lmpifort -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -ldl Defined "HAVE_LIBPNETCDF" to "1" Checking for optional headers [] in Download PNETCDF: ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] ================================================================================ TEST checkInclude from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] Found header files [] in ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] Checking for headers ['pnetcdf.h'] in Download PNETCDF: ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] ================================================================================ TEST checkInclude from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['pnetcdf.h'] in ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] Checking include with compiler flags var CPPFLAGS ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include', '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -E -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.packages.metis -I/tmp/petsc-oluu3nld/config.packages.MPI -I/tmp/petsc-oluu3nld/config.packages.parmetis -I/tmp/petsc-oluu3nld/config.packages.hdf5 -I/tmp/petsc-oluu3nld/config.headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include /tmp/petsc-oluu3nld/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Found header files ['pnetcdf.h'] in ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] ================================================================================ TEST checkVersion from config.packages.pnetcdf(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:992) TESTING: checkVersion from config.packages.pnetcdf(config/BuildSystem/config/package.py:992) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "pnetcdf.h" ;petscpkgver(PNETCDF_VERSION); Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -E -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.packages.metis -I/tmp/petsc-oluu3nld/config.packages.MPI -I/tmp/petsc-oluu3nld/config.packages.parmetis -I/tmp/petsc-oluu3nld/config.packages.hdf5 -I/tmp/petsc-oluu3nld/config.packages.pnetcdf -I/tmp/petsc-oluu3nld/config.headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include /tmp/petsc-oluu3nld/config.packages.pnetcdf/conftest.c For pnetcdf need <= 1.12.1 <= ================================================================================ TEST checkSharedLibrary from config.packages.pnetcdf(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:926) TESTING: checkSharedLibrary from config.packages.pnetcdf(config/BuildSystem/config/package.py:926) By default we don't care about checking if the library is shared child config.packages.pnetcdf 203.466351 ================================================================================ TEST checkDependencies from config.packages.netcdf(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:843) TESTING: checkDependencies from config.packages.netcdf(config/BuildSystem/config/package.py:843) ================================================================================ TEST configureLibrary from config.packages.netcdf(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:868) TESTING: configureLibrary from config.packages.netcdf(config/BuildSystem/config/package.py:868) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional netcdf Looking for NETCDF at git.netcdf, hg.netcdf or a directory starting with ['netcdf'] Could not locate an existing copy of NETCDF: ['git.parmetis', 'Chaco-2.2-p2', 'mpich-3.3.2', 'hdf5-1.12.0', 'git.ctetgen', 'zlib-1.2.11', 'git.metis', 'pnetcdf-1.12.1'] Downloading netcdf =============================================================================== Trying to download https://github.com/Unidata/netcdf-c/archive/v4.5.0.tar.gz for NETCDF =============================================================================== Downloading https://github.com/Unidata/netcdf-c/archive/v4.5.0.tar.gz to /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/_d_v4.5.0.tar.gz Extracting /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/_d_v4.5.0.tar.gz Running Executable WITHOUT threads to time it out Executing: cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages; chmod -R a+r netcdf-c-4.5.0;find netcdf-c-4.5.0 -type d -name "*" -exec chmod a+rx {} \; Looking for NETCDF at git.netcdf, hg.netcdf or a directory starting with ['netcdf'] Found a copy of NETCDF in netcdf-c-4.5.0 All intermediate test results are stored in /tmp/petsc-oluu3nld/config.packages.netcdf Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 -v stdout: mpifort for MPICH version 3.3.2 NETCDF was just downloaded, forcing a rebuild because cannot determine if package has changed =============================================================================== Running configure on NETCDF; this may take several minutes =============================================================================== Running Executable WITHOUT threads to time it out Executing: ./configure --prefix=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt MAKE=/usr/bin/make --libdir=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib CC="/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc" CFLAGS="-fstack-protector -O3" AR="/usr/bin/ar" ARFLAGS="cr" CXX="/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx" CXXFLAGS="-fstack-protector -O3" F90="/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90" F90FLAGS="-ffree-line-length-0 -O3" FFLAGS="-ffree-line-length-0 -O3" FC="/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90" F77="/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90" FCFLAGS="-ffree-line-length-0 -O3" --enable-shared CPPFLAGS="-I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include" LIBS="-Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lpnetcdf -lstdc++ -ldl -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lmpifort -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lgfortran -lm -lgcc_s -lquadmath -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lz -lm -lstdc++ -ldl " --enable-netcdf-4 --enable-pnetcdf --disable-dap --disable-dynamic-loading --disable-hdf4 stdout: configure: netCDF 4.5.0 checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking target system type... x86_64-pc-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether /usr/bin/make sets $(MAKE)... yes checking whether /usr/bin/make supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... no configure: checking user options checking whether a win32 DLL is desired... no checking whether a NCIO_MINBLOCKSIZE was specified... 256 checking if fsync support is enabled... no checking if jna bug workaround is enabledd... no checking whether extra valgrind tests should be run... no checking whether we should build netCDF-4... yes checking do we require hdf5 dynamic-loading support... no checking whether reading of HDF4 SD files is to be enabled... no checking whether to fetch some sample HDF4 files from Unidata ftp site to test HDF4 reading (requires wget)... no checking whether we should attempt to install netcdf-fortran (EXPERIMENTAL)... no checking whether extra example tests should be run... no checking whether parallel IO tests should be run... no checking whether a default chunk size in bytes was specified... 4194304 checking whether a maximum per-variable cache size for HDF5 was specified... 67108864 checking whether a number of chunks for the default per-variable cache was specified... 10 checking whether a default file cache size for HDF5 was specified... 4194304 checking whether a default file cache maximum number of elements for HDF5 was specified... 1009 checking whether a default cache preemption for HDF5 was specified... 0.75 checking whether netCDF-4 logging is enabled... no checking whether DAP client(s) are to be built... no checking for style of include used by /usr/bin/make... GNU checking for gcc... /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc accepts -g... yes checking for /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc option to accept ISO C89... none needed checking whether /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc understands -c and -o together... yes checking dependency style of /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc... gcc3 checking for curl_easy_setopt in -lcurl... no checking whether dap remote testing should be enabled (default on)... no checking whether dap remote authorization testing should be enabled (default off)... no checking whether netcdf4 group names for DAP2 hould be enabled (default on)... yes configure: DAP2 groups is being disabled because DAP2 support is disabled or netcdf-4 disabled checking which remote test server(s) to use... remotetest.unidata.ucar.edu,jetstream.unidata.ucar.edu (defaults) checking whether the time-consuming dap tests should be enabled (default off)... no checking whether CDF5 support should be enabled (default off)... no checking whether netCDF extra tests should be run (developers only)... yes checking whether FFIO will be used... no checking whether STDIO will be used... no checking whether examples should be built... yes checking whether v2 netCDF API should be built... yes checking whether the ncgen/ncdump/nccopy should be built... yes checking whether test should be built and run... yes checking whether large file (> 2GB) tests should be run... no checking whether benchmarks should be run (experimental)... no checking whether extreme numbers should be used in tests... yes checking where to put large temp files if large file tests are run... . configure: finding C compiler checking for gcc... (cached) /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc checking whether we are using the GNU C compiler... (cached) yes checking whether /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc accepts -g... (cached) yes checking for /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc option to accept ISO C89... (cached) none needed checking whether /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc understands -c and -o together... (cached) yes checking dependency style of /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc... (cached) gcc3 checking for an ANSI C-conforming const... yes checking whether CURLOPT_USERNAME is defined... no checking whether CURLOPT_PASSWORD is defined... no checking whether CURLOPT_KEYPASSWD is defined... no checking whether CURLINFO_RESPONSE_CODE is defined... no checking whether CURLOPT_CHUNK_BGN_FUNCTION is defined... no configure: setting up libtool checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking how to run the C preprocessor... /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc supports -fno-rtti -fno-exceptions... no checking for /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc option to produce PIC... -fPIC -DPIC checking if /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc PIC flag -fPIC -DPIC works... yes checking if /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc static flag -static works... no checking if /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc supports -c -o file.o... yes checking if /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc supports -c -o file.o... (cached) yes checking whether the /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes configure: finding other utilities checking for m4... m4 checking for doxygen... no checking for dot... no checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no configure: displaying some results checking CPPFLAGS... -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include checking CC CFLAGS... /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 checking type /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc... /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc is /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc checking CXX... /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx checking CXXFLAGS... -fstack-protector -O3 checking type /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx... /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx is /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx checking FC... /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 checking FFLAGS... -ffree-line-length-0 -O3 checking type /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90... /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 is /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 checking F90... /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 checking FCFLAGS... -ffree-line-length-0 -O3 checking type /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90... /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 is /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 checking AR... /usr/bin/ar checking AR_FLAGS... cru checking type /usr/bin/ar... /usr/bin/ar is /usr/bin/ar checking NM... /usr/bin/nm -B checking NMFLAGS... configure: checking types, headers, and functions checking for stdlib.h... (cached) yes checking for sys/types.h... (cached) yes checking sys/dir.h usability... yes checking sys/dir.h presence... yes checking for sys/dir.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for ANSI C header files... (cached) yes checking for sys/wait.h that is POSIX.1 compatible... yes checking whether time.h and sys/time.h may both be included... yes checking locale.h usability... yes checking locale.h presence... yes checking for locale.h... yes checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/stat.h... (cached) yes checking getopt.h usability... yes checking getopt.h presence... yes checking for getopt.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for vprintf... yes checking for _doprnt... no checking sys/resource.h usability... yes checking sys/resource.h presence... yes checking for sys/resource.h... yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking ftw.h usability... yes checking ftw.h presence... yes checking for ftw.h... yes checking for strlcat... no checking for strerror... yes checking for snprintf... yes checking for strchr... yes checking for strrchr... yes checking for strcat... yes checking for strcpy... yes checking for strdup... yes checking for strcasecmp... yes checking for strtod... yes checking for strtoll... yes checking for strtoull... yes checking for strstr... yes checking for mkstemp... yes checking for rand... yes checking for random... yes checking for memcmp... yes checking for getrlimit... yes checking for gettimeofday... yes checking for fsync... yes checking for MPI_Comm_f2c... no checking whether in-memory files are enabled... yes checking for memmove... yes checking for getpagesize... yes checking for sysconf... yes checking whether mmap is enabled for in-memory files... no checking for stdlib.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/param.h... (cached) yes checking for getpagesize... (cached) yes checking for working mmap... yes checking for mremap... yes checking for size_t... yes checking for working alloca.h... yes checking for alloca... yes checking whether isnan is declared... yes checking whether isinf is declared... yes checking whether isfinite is declared... yes checking whether signbit is declared... yes checking for struct stat.st_blksize... yes checking for IEEE floating point format... yes checking for size_t... (cached) yes checking for ssize_t... yes checking for ptrdiff_t... yes checking for uchar... no checking for longlong... no checking for ushort... yes checking for uint... yes checking for int64... no checking for uint64 off_t... no checking for size_t... (cached) yes checking for off_t... yes checking whether char is unsigned... no checking whether byte ordering is bigendian... no checking size of short... 2 checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking size of float... 4 checking size of double... 8 checking size of off_t... 8 checking size of size_t... 8 checking size of unsigned long long... 8 checking size of unsigned long long... (cached) 8 checking size of unsigned char... 1 checking size of ushort... 2 checking size of uint... 4 checking size of ushort... (cached) 2 checking size of uint... (cached) 4 checking size of ptrdiff_t... 8 checking size of ssize_t... 8 checking size of void*... 8 checking for library containing deflate... none required checking for floor in -lm... yes checking for library containing H5Fflush... none required checking for library containing H5DSis_scale... none required checking hdf5.h usability... yes checking hdf5.h presence... yes checking for hdf5.h... yes checking for H5Pget_fapl_mpiposix... no checking for H5Pget_fapl_mpio... yes checking for H5Pset_deflate... yes checking for H5Z_SZIP... no checking for H5free_memory... yes checking for H5Pset_libver_bounds... yes checking for H5Pset_all_coll_metadata_ops... yes checking whether parallel io is enabled in hdf5... yes checking whether parallel I/O is enabled for netcdf-4... yes checking whether parallel I/O for classic files is to be enabled... yes checking for ncmpi_create in -lpnetcdf... yes checking Is libpnetcdf version 1.6.0 or later?... yes checking for full path of header file pnetcdf.h... /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include/pnetcdf.h checking if erange-fill is enabled in PnetCDF... configure: yes checking if relax-coord-bound is enabled in PnetCDF... configure: yes checking for unsigned long long int... yes checking for long long int... yes checking for unsigned long long int... (cached) yes checking what to call the output of the ftpbin target... binary-netcdf-4.5.0.tar /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx checking if libtool needs -no-undefined flag to build shared libraries... no checking value of LIBS... -lpnetcdf -lm -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lpnetcdf -lstdc++ -ldl -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lmpifort -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lgfortran -lm -lgcc_s -lquadmath -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lz -lm -lstdc++ -ldl checking If compilation is for use with JNA... no configure: generating header files and makefiles checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating test_common.sh config.status: creating Makefile config.status: creating nc-config config.status: creating netcdf.pc config.status: creating libnetcdf.settings config.status: creating postinstall.sh config.status: creating include/netcdf_meta.h config.status: creating include/Makefile config.status: creating h5_test/Makefile config.status: creating libsrc/Makefile config.status: creating libsrc4/Makefile config.status: creating libsrcp/Makefile config.status: creating ncdump/Makefile config.status: creating ncgen3/Makefile config.status: creating ncgen/Makefile config.status: creating examples/Makefile config.status: creating examples/C/Makefile config.status: creating examples/CDL/Makefile config.status: creating oc2/Makefile config.status: creating libdap2/Makefile config.status: creating libdap4/Makefile config.status: creating libdispatch/Makefile config.status: creating liblib/Makefile config.status: creating ncdump/cdl/Makefile config.status: creating ncdump/expected/Makefile config.status: creating docs/Makefile config.status: creating docs/images/Makefile config.status: creating nctest/Makefile config.status: creating nc_test4/Makefile config.status: creating nc_test/Makefile config.status: creating ncdap_test/Makefile config.status: creating ncdap_test/testdata3/Makefile config.status: creating ncdap_test/expected3/Makefile config.status: creating ncdap_test/expectremote3/Makefile config.status: creating dap4_test/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands # NetCDF C Configuration Summary ============================== # General ------- NetCDF Version: 4.5.0 Configured On: Wed Jun 3 10:31:26 PDT 2020 Host System: x86_64-pc-linux-gnu Build Directory: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0 Install Prefix: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt # Compiling Options ----------------- C Compiler: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc CFLAGS: -fstack-protector -O3 CPPFLAGS: -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include LDFLAGS: AM_CFLAGS: AM_CPPFLAGS: AM_LDFLAGS: Shared Library: yes Static Library: yes Extra libraries: -lpnetcdf -lm -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lpnetcdf -lstdc++ -ldl -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lmpifort -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lgfortran -lm -lgcc_s -lquadmath -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lz -lm -lstdc++ -ldl # Features -------- NetCDF-2 API: yes HDF4 Support: no NetCDF-4 API: yes NC-4 Parallel Support: yes PNetCDF Support: yes DAP2 Support: no DAP4 Support: no Diskless Support: yes MMap Support: no JNA Support: no CDF5 Support: no =============================================================================== Running make on NETCDF; this may take several minutes =============================================================================== Running Executable WITHOUT threads to time it out Executing: /usr/bin/make clean stdout: Making clean in include make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/include' rm -rf .libs _libs rm -f *.lo make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/include' Making clean in h5_test make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/h5_test' rm -f tst_h_files tst_h_files2 tst_h_files4 tst_h_atts tst_h_atts3 tst_h_atts4 tst_h_vars tst_h_vars2 tst_h_vars3 tst_h_grps tst_h_compounds tst_h_compounds2 tst_h_wrt_cmp tst_h_rd_cmp tst_h_vl tst_h_opaques tst_h_strings tst_h_strings1 tst_h_strings2 tst_h_ints tst_h_dimscales tst_h_dimscales1 tst_h_dimscales2 tst_h_dimscales3 tst_h_enums tst_h_dimscales4 test -z "tst_h_*.h5" || rm -f tst_h_*.h5 rm -rf .libs _libs rm -f *.o test -z "tst_h_files.log tst_h_files2.log tst_h_files4.log tst_h_atts.log tst_h_atts3.log tst_h_atts4.log tst_h_vars.log tst_h_vars2.log tst_h_vars3.log tst_h_grps.log tst_h_compounds.log tst_h_compounds2.log tst_h_wrt_cmp.log tst_h_rd_cmp.log tst_h_vl.log tst_h_opaques.log tst_h_strings.log tst_h_strings1.log tst_h_strings2.log tst_h_ints.log tst_h_dimscales.log tst_h_dimscales1.log tst_h_dimscales2.log tst_h_dimscales3.log tst_h_enums.log tst_h_dimscales4.log" || rm -f tst_h_files.log tst_h_files2.log tst_h_files4.log tst_h_atts.log tst_h_atts3.log tst_h_atts4.log tst_h_vars.log tst_h_vars2.log tst_h_vars3.log tst_h_grps.log tst_h_compounds.log tst_h_compounds2.log tst_h_wrt_cmp.log tst_h_rd_cmp.log tst_h_vl.log tst_h_opaques.log tst_h_strings.log tst_h_strings1.log tst_h_strings2.log tst_h_ints.log tst_h_dimscales.log tst_h_dimscales1.log tst_h_dimscales2.log tst_h_dimscales3.log tst_h_enums.log tst_h_dimscales4.log test -z "tst_h_files.trs tst_h_files2.trs tst_h_files4.trs tst_h_atts.trs tst_h_atts3.trs tst_h_atts4.trs tst_h_vars.trs tst_h_vars2.trs tst_h_vars3.trs tst_h_grps.trs tst_h_compounds.trs tst_h_compounds2.trs tst_h_wrt_cmp.trs tst_h_rd_cmp.trs tst_h_vl.trs tst_h_opaques.trs tst_h_strings.trs tst_h_strings1.trs tst_h_strings2.trs tst_h_ints.trs tst_h_dimscales.trs tst_h_dimscales1.trs tst_h_dimscales2.trs tst_h_dimscales3.trs tst_h_enums.trs tst_h_dimscales4.trs" || rm -f tst_h_files.trs tst_h_files2.trs tst_h_files4.trs tst_h_atts.trs tst_h_atts3.trs tst_h_atts4.trs tst_h_vars.trs tst_h_vars2.trs tst_h_vars3.trs tst_h_grps.trs tst_h_compounds.trs tst_h_compounds2.trs tst_h_wrt_cmp.trs tst_h_rd_cmp.trs tst_h_vl.trs tst_h_opaques.trs tst_h_strings.trs tst_h_strings1.trs tst_h_strings2.trs tst_h_ints.trs tst_h_dimscales.trs tst_h_dimscales1.trs tst_h_dimscales2.trs tst_h_dimscales3.trs tst_h_enums.trs tst_h_dimscales4.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/h5_test' Making clean in libdispatch make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libdispatch' rm -f test_ncuri test_pathcvt rm -rf .libs _libs test -z "libdispatch.la libnetcdf2.la " || rm -f libdispatch.la libnetcdf2.la rm -f ./so_locations rm -f *.o test -z "test_ncuri.log test_pathcvt.log" || rm -f test_ncuri.log test_pathcvt.log test -z "test_ncuri.trs test_pathcvt.trs" || rm -f test_ncuri.trs test_pathcvt.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libdispatch' Making clean in libsrc make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libsrc' rm -rf .libs _libs test -z "libnetcdf3.la" || rm -f libnetcdf3.la rm -f ./so_locations rm -f *.o rm -f *.lo make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libsrc' Making clean in libsrc4 make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libsrc4' rm -rf .libs _libs test -z "libnetcdf4.la" || rm -f libnetcdf4.la rm -f ./so_locations rm -f *.o rm -f *.lo make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libsrc4' Making clean in libsrcp make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libsrcp' rm -rf .libs _libs test -z "libnetcdfp.la" || rm -f libnetcdfp.la rm -f ./so_locations rm -f *.o rm -f *.lo make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libsrcp' Making clean in liblib make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/liblib' test -z "" || rm -f test -z "libnetcdf.la" || rm -f libnetcdf.la rm -f ./so_locations rm -rf .libs _libs rm -f *.o rm -f *.lo make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/liblib' Making clean in ncgen3 make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncgen3' rm -f ncgen3 test -z "c0.nc c0_64.nc c0_4.nc c0_4c.nc" || rm -f c0.nc c0_64.nc c0_4.nc c0_4c.nc rm -rf .libs _libs rm -f *.o test -z "run_tests.sh.log run_nc4_tests.sh.log" || rm -f run_tests.sh.log run_nc4_tests.sh.log test -z "run_tests.sh.trs run_nc4_tests.sh.trs" || rm -f run_tests.sh.trs run_nc4_tests.sh.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncgen3' Making clean in ncgen make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncgen' rm -f ncgen test -z "c0.nc c0_64.nc c0_4.nc c0_4c.nc ref_camrun.c ncf199.nc c5.nc compound_datasize_test.nc compound_datasize_test2.nc tst_compound_datasize_test.cdl tst_compound_datasize_test2.cdl tst_ncf199.cdl tst_tst_gattenum.cdl tst_gattenum.nc tst_tst_usuffix.cdl tst_usuffix.nc tst_c0.cdl tst_c0_4.cdl tst_c0_4c.cdl tst_c0_64.cdl" || rm -f c0.nc c0_64.nc c0_4.nc c0_4c.nc ref_camrun.c ncf199.nc c5.nc compound_datasize_test.nc compound_datasize_test2.nc tst_compound_datasize_test.cdl tst_compound_datasize_test2.cdl tst_ncf199.cdl tst_tst_gattenum.cdl tst_gattenum.nc tst_tst_usuffix.cdl tst_usuffix.nc tst_c0.cdl tst_c0_4.cdl tst_c0_4c.cdl tst_c0_64.cdl rm -rf .libs _libs rm -f *.o rm -f *.lo make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncgen' Making clean in ncdump make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump' Making clean in cdl make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump/cdl' rm -rf .libs _libs rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump/cdl' Making clean in expected make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump/expected' rm -rf .libs _libs rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump/expected' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump' rm -f ncdump nccopy rm -f rewrite-scalar ctest ctest64 ncdump tst_utf8 bom tst_dimsizes nctrunc tst_fileinfo tst_create_files tst_h_rdc0 tst_group_data tst_enum_data tst_opaque_data tst_string_data tst_vlen_data tst_comp tst_comp2 tst_nans tst_special_atts tst_unicode tst_fillbug tst_compress tst_chunking tst_h_scalar tst_bug324 test -z "test0.nc test1_ncdump.cdl test1_ncdump.nc test2_ncdump.cdl test1.cdl test0_ncdump.nc ctest1.cdl test1_cdf5.nc test1_cdf5.cdl test0_cdf5.nc test2_cdf5.nc test2_cdf5.cdl test0_offset.nc test1_offset.nc test1_offset.cdl test2_offset.nc test2_offset.cdl ctest0.nc ctest0_64.nc c1.cdl c1_4.cdl ctest1_64.cdl c0.nc c0_4.nc small.nc small2.nc c0tmp.nc c1.ncml utf8.cdl utf8_64.cdl utf8.nc utf8_64.nc tmp.cdl tst_vlen_data.nc tst_utf8.nc tst_special_atts.nc tst_unicode.nc tst_solar_2.nc tst_string_data.nc tst_calendars.nc tst_nans.nc tst_opaque_data.nc tst_solar_cmp.nc tst_enum_data.nc tst_solar_1.nc tst_mslp_64.nc tst_mslp.nc tst_bug321.nc tst_comp2.nc tst_ncml.nc tst_fillbug.nc tst_group_data.nc tst_small.nc tst_comp.nc tst_unicode.cdl tst_group_data.cdl tst_compounds2.cdl tst_comp.cdl tst_enum_data.cdl tst_small.cdl tst_times.cdl tst_solar_2.cdl tst_string_data.cdl tst_fillbug.cdl tst_opaque_data.cdl tst_compounds4.cdl tst_utf8.cdl tst_compounds3.cdl tst_special_atts.cdl tst_nans.cdl tst_format_att_64.cdl tst_vlen_data.cdl tst_solar_1.cdl tst_format_att.cdl tst_inflated.nc tmp_subset.cdl tst_inflated4.nc tst_deflated.nc tst_chunking.nc tmp*.nc tst_charfill.nc tmp_tst_charfill.cdl iter.* tst_nc_test_netcdf4_4_0.cdl tst_mud4.nc tst_mud4.cdl tst_mud4-bc.cdl tst_ncf213.cdl tst_ncf213.nc tst_h_scalar.cdl tst_h_scalar.nc tst_mud4_chars.cdl tst_mud4_chars.nc inttags.nc inttags4.nc tst_inttags.cdl tst_inttags4.cdl tst_dimsize_classic.nc tst_dimsize_64offset.nc tst_dimsize_64data.nc nc4_fileinfo.nc hdf5_fileinfo.hdf ref_hdf5_compat1.nc ref_hdf5_compat2.nc ref_hdf5_compat3.nc ref_tst_compounds.nc ref_tst_dims.nc ref_tst_interops4.nc ref_tst_xplatform2_1.nc ref_tst_xplatform2_2.nc nccopy3_subset_out.nc results/*.nc results/*.dmp results/*.dmp2 tmp*.cdl c5.nc compound_datasize_test.nc compound_datasize_test2.nc ncf199.nc ref_camrun.c tst_c0.cdl tst_c0_4.cdl tst_c0_4c.cdl tst_c0_64.cdl tst_compound_datasize_test.cdl tst_compound_datasize_test2.cdl tst_gattenum.nc tst_ncf199.cdl tst_tst_gattenum.cdl tst_tst_usuffix.cdl tst_usuffix.nc tst_bug324.nc nccopy3_subset_out.nc" || rm -f test0.nc test1_ncdump.cdl test1_ncdump.nc test2_ncdump.cdl test1.cdl test0_ncdump.nc ctest1.cdl test1_cdf5.nc test1_cdf5.cdl test0_cdf5.nc test2_cdf5.nc test2_cdf5.cdl test0_offset.nc test1_offset.nc test1_offset.cdl test2_offset.nc test2_offset.cdl ctest0.nc ctest0_64.nc c1.cdl c1_4.cdl ctest1_64.cdl c0.nc c0_4.nc small.nc small2.nc c0tmp.nc c1.ncml utf8.cdl utf8_64.cdl utf8.nc utf8_64.nc tmp.cdl tst_vlen_data.nc tst_utf8.nc tst_special_atts.nc tst_unicode.nc tst_solar_2.nc tst_string_data.nc tst_calendars.nc tst_nans.nc tst_opaque_data.nc tst_solar_cmp.nc tst_enum_data.nc tst_solar_1.nc tst_mslp_64.nc tst_mslp.nc tst_bug321.nc tst_comp2.nc tst_ncml.nc tst_fillbug.nc tst_group_data.nc tst_small.nc tst_comp.nc tst_unicode.cdl tst_group_data.cdl tst_compounds2.cdl tst_comp.cdl tst_enum_data.cdl tst_small.cdl tst_times.cdl tst_solar_2.cdl tst_string_data.cdl tst_fillbug.cdl tst_opaque_data.cdl tst_compounds4.cdl tst_utf8.cdl tst_compounds3.cdl tst_special_atts.cdl tst_nans.cdl tst_format_att_64.cdl tst_vlen_data.cdl tst_solar_1.cdl tst_format_att.cdl tst_inflated.nc tmp_subset.cdl tst_inflated4.nc tst_deflated.nc tst_chunking.nc tmp*.nc tst_charfill.nc tmp_tst_charfill.cdl iter.* tst_nc_test_netcdf4_4_0.cdl tst_mud4.nc tst_mud4.cdl tst_mud4-bc.cdl tst_ncf213.cdl tst_ncf213.nc tst_h_scalar.cdl tst_h_scalar.nc tst_mud4_chars.cdl tst_mud4_chars.nc inttags.nc inttags4.nc tst_inttags.cdl tst_inttags4.cdl tst_dimsize_classic.nc tst_dimsize_64offset.nc tst_dimsize_64data.nc nc4_fileinfo.nc hdf5_fileinfo.hdf ref_hdf5_compat1.nc ref_hdf5_compat2.nc ref_hdf5_compat3.nc ref_tst_compounds.nc ref_tst_dims.nc ref_tst_interops4.nc ref_tst_xplatform2_1.nc ref_tst_xplatform2_2.nc nccopy3_subset_out.nc results/*.nc results/*.dmp results/*.dmp2 tmp*.cdl c5.nc compound_datasize_test.nc compound_datasize_test2.nc ncf199.nc ref_camrun.c tst_c0.cdl tst_c0_4.cdl tst_c0_4c.cdl tst_c0_64.cdl tst_compound_datasize_test.cdl tst_compound_datasize_test2.cdl tst_gattenum.nc tst_ncf199.cdl tst_tst_gattenum.cdl tst_tst_usuffix.cdl tst_usuffix.nc tst_bug324.nc nccopy3_subset_out.nc rm -rf .libs _libs rm -rf results rm -f nc4print rm -f *.o test -z "tst_inttags.sh.log run_tests.sh.log tst_64bit.sh.log ctest.log ctest64.log tst_output.sh.log tst_lengths.sh.log tst_calendars.sh.log tst_utf8.log run_utf8_tests.sh.log tst_nccopy3.sh.log tst_nccopy3_subset.sh.log tst_charfill.sh.log tst_iter.sh.log tst_formatx3.sh.log tst_bom.sh.log tst_dimsizes.sh.log run_ncgen_tests.sh.log tst_fileinfo.sh.log run_ncgen_nc4_tests.sh.log tst_inmemory_nc3.sh.log tst_inmemory_nc4.sh.log tst_inttags4.sh.log tst_create_files.log tst_group_data.log tst_enum_data.log tst_opaque_data.log tst_string_data.log tst_vlen_data.log tst_comp.log tst_comp2.log tst_nans.log tst_special_atts.log tst_netcdf4.sh.log tst_h_rdc0.log tst_unicode.log tst_fillbug.log tst_fillbug.sh.log tst_netcdf4_4.sh.log tst_compress.log tst_nccopy4.sh.log tst_grp_spec.sh.log tst_mud.sh.log tst_h_scalar.log tst_h_scalar.sh.log tst_formatx4.sh.log tst_bug324.log run_utf8_nc4_tests.sh.log run_back_comp_tests.sh.log tst_ncgen4_classic.sh.log tst_ncgen4.sh.log" || rm -f tst_inttags.sh.log run_tests.sh.log tst_64bit.sh.log ctest.log ctest64.log tst_output.sh.log tst_lengths.sh.log tst_calendars.sh.log tst_utf8.log run_utf8_tests.sh.log tst_nccopy3.sh.log tst_nccopy3_subset.sh.log tst_charfill.sh.log tst_iter.sh.log tst_formatx3.sh.log tst_bom.sh.log tst_dimsizes.sh.log run_ncgen_tests.sh.log tst_fileinfo.sh.log run_ncgen_nc4_tests.sh.log tst_inmemory_nc3.sh.log tst_inmemory_nc4.sh.log tst_inttags4.sh.log tst_create_files.log tst_group_data.log tst_enum_data.log tst_opaque_data.log tst_string_data.log tst_vlen_data.log tst_comp.log tst_comp2.log tst_nans.log tst_special_atts.log tst_netcdf4.sh.log tst_h_rdc0.log tst_unicode.log tst_fillbug.log tst_fillbug.sh.log tst_netcdf4_4.sh.log tst_compress.log tst_nccopy4.sh.log tst_grp_spec.sh.log tst_mud.sh.log tst_h_scalar.log tst_h_scalar.sh.log tst_formatx4.sh.log tst_bug324.log run_utf8_nc4_tests.sh.log run_back_comp_tests.sh.log tst_ncgen4_classic.sh.log tst_ncgen4.sh.log test -z "tst_inttags.sh.trs run_tests.sh.trs tst_64bit.sh.trs ctest.trs ctest64.trs tst_output.sh.trs tst_lengths.sh.trs tst_calendars.sh.trs tst_utf8.trs run_utf8_tests.sh.trs tst_nccopy3.sh.trs tst_nccopy3_subset.sh.trs tst_charfill.sh.trs tst_iter.sh.trs tst_formatx3.sh.trs tst_bom.sh.trs tst_dimsizes.sh.trs run_ncgen_tests.sh.trs tst_fileinfo.sh.trs run_ncgen_nc4_tests.sh.trs tst_inmemory_nc3.sh.trs tst_inmemory_nc4.sh.trs tst_inttags4.sh.trs tst_create_files.trs tst_group_data.trs tst_enum_data.trs tst_opaque_data.trs tst_string_data.trs tst_vlen_data.trs tst_comp.trs tst_comp2.trs tst_nans.trs tst_special_atts.trs tst_netcdf4.sh.trs tst_h_rdc0.trs tst_unicode.trs tst_fillbug.trs tst_fillbug.sh.trs tst_netcdf4_4.sh.trs tst_compress.trs tst_nccopy4.sh.trs tst_grp_spec.sh.trs tst_mud.sh.trs tst_h_scalar.trs tst_h_scalar.sh.trs tst_formatx4.sh.trs tst_bug324.trs run_utf8_nc4_tests.sh.trs run_back_comp_tests.sh.trs tst_ncgen4_classic.sh.trs tst_ncgen4.sh.trs" || rm -f tst_inttags.sh.trs run_tests.sh.trs tst_64bit.sh.trs ctest.trs ctest64.trs tst_output.sh.trs tst_lengths.sh.trs tst_calendars.sh.trs tst_utf8.trs run_utf8_tests.sh.trs tst_nccopy3.sh.trs tst_nccopy3_subset.sh.trs tst_charfill.sh.trs tst_iter.sh.trs tst_formatx3.sh.trs tst_bom.sh.trs tst_dimsizes.sh.trs run_ncgen_tests.sh.trs tst_fileinfo.sh.trs run_ncgen_nc4_tests.sh.trs tst_inmemory_nc3.sh.trs tst_inmemory_nc4.sh.trs tst_inttags4.sh.trs tst_create_files.trs tst_group_data.trs tst_enum_data.trs tst_opaque_data.trs tst_string_data.trs tst_vlen_data.trs tst_comp.trs tst_comp2.trs tst_nans.trs tst_special_atts.trs tst_netcdf4.sh.trs tst_h_rdc0.trs tst_unicode.trs tst_fillbug.trs tst_fillbug.sh.trs tst_netcdf4_4.sh.trs tst_compress.trs tst_nccopy4.sh.trs tst_grp_spec.sh.trs tst_mud.sh.trs tst_h_scalar.trs tst_h_scalar.sh.trs tst_formatx4.sh.trs tst_bug324.trs run_utf8_nc4_tests.sh.trs run_back_comp_tests.sh.trs tst_ncgen4_classic.sh.trs tst_ncgen4.sh.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump' Making clean in nctest make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/nctest' rm -f nctest tst_rename test -z "nctest_classic.nc nctest_64bit_offset.nc nctest_netcdf4.nc test2.nc temp.tmp tst_*.nc nctest_classic.cdl ref_nctest_classic.cdl" || rm -f nctest_classic.nc nctest_64bit_offset.nc nctest_netcdf4.nc test2.nc temp.tmp tst_*.nc nctest_classic.cdl ref_nctest_classic.cdl rm -rf .libs _libs rm -f *.o test -z "nctest.log tst_rename.log compare_test_files.sh.log" || rm -f nctest.log tst_rename.log compare_test_files.sh.log test -z "nctest.trs tst_rename.trs compare_test_files.sh.trs" || rm -f nctest.trs tst_rename.trs compare_test_files.sh.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/nctest' Making clean in nc_test make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/nc_test' rm -f t_nc tst_small nc_test tst_misc tst_norm tst_names tst_nofill tst_nofill2 tst_nofill3 tst_atts3 tst_meta tst_inq_type tst_utf8_validate tst_utf8_phrases tst_global_fillval tst_atts tst_put_vars tst_elatefill tst_parallel2 tst_pnetcdf tst_addvar tst_formatx_pnetcdf tst_diskless tst_diskless3 tst_diskless4 tst_diskless5 tst_diskless2 test -z "nc_test_classic.nc nc_test_64bit.nc nc_test_netcdf4.nc tst_*.nc t_nc.nc large_files.nc quick_large_files.nc tst_diskless.nc tst_diskless2.nc tst_diskless3.nc tst_diskless3_file.cdl tst_diskless3_memory.cdl tst_diskless4.cdl tst_diskless4.nc tst_formatx.nc nc_test_cdf5.nc unlim.nc tst_inq_type.nc tst_elatefill.nc tst_global_fillval.nc tst_large_cdf5.nc ncx.c" || rm -f nc_test_classic.nc nc_test_64bit.nc nc_test_netcdf4.nc tst_*.nc t_nc.nc large_files.nc quick_large_files.nc tst_diskless.nc tst_diskless2.nc tst_diskless3.nc tst_diskless3_file.cdl tst_diskless3_memory.cdl tst_diskless4.cdl tst_diskless4.nc tst_formatx.nc nc_test_cdf5.nc unlim.nc tst_inq_type.nc tst_elatefill.nc tst_global_fillval.nc tst_large_cdf5.nc ncx.c rm -rf .libs _libs rm -f *.o test -z "t_nc.log tst_small.log nc_test.log tst_misc.log tst_norm.log tst_names.log tst_nofill.log tst_nofill2.log tst_nofill3.log tst_atts3.log tst_meta.log tst_inq_type.log tst_utf8_validate.log tst_utf8_phrases.log tst_global_fillval.log tst_atts.log tst_put_vars.log tst_elatefill.log tst_parallel2.log tst_pnetcdf.log tst_addvar.log tst_formatx_pnetcdf.log run_diskless.sh.log run_diskless5.sh.log run_pnetcdf_test.sh.log" || rm -f t_nc.log tst_small.log nc_test.log tst_misc.log tst_norm.log tst_names.log tst_nofill.log tst_nofill2.log tst_nofill3.log tst_atts3.log tst_meta.log tst_inq_type.log tst_utf8_validate.log tst_utf8_phrases.log tst_global_fillval.log tst_atts.log tst_put_vars.log tst_elatefill.log tst_parallel2.log tst_pnetcdf.log tst_addvar.log tst_formatx_pnetcdf.log run_diskless.sh.log run_diskless5.sh.log run_pnetcdf_test.sh.log test -z "t_nc.trs tst_small.trs nc_test.trs tst_misc.trs tst_norm.trs tst_names.trs tst_nofill.trs tst_nofill2.trs tst_nofill3.trs tst_atts3.trs tst_meta.trs tst_inq_type.trs tst_utf8_validate.trs tst_utf8_phrases.trs tst_global_fillval.trs tst_atts.trs tst_put_vars.trs tst_elatefill.trs tst_parallel2.trs tst_pnetcdf.trs tst_addvar.trs tst_formatx_pnetcdf.trs run_diskless.sh.trs run_diskless5.sh.trs run_pnetcdf_test.sh.trs" || rm -f t_nc.trs tst_small.trs nc_test.trs tst_misc.trs tst_norm.trs tst_names.trs tst_nofill.trs tst_nofill2.trs tst_nofill3.trs tst_atts3.trs tst_meta.trs tst_inq_type.trs tst_utf8_validate.trs tst_utf8_phrases.trs tst_global_fillval.trs tst_atts.trs tst_put_vars.trs tst_elatefill.trs tst_parallel2.trs tst_pnetcdf.trs tst_addvar.trs tst_formatx_pnetcdf.trs run_diskless.sh.trs run_diskless5.sh.trs run_pnetcdf_test.sh.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/nc_test' Making clean in nc_test4 make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/nc_test4' rm -f tst_dims tst_dims2 tst_dims3 tst_files tst_files4 tst_vars tst_varms tst_unlim_vars tst_converts tst_converts2 tst_grps tst_grps2 tst_compounds tst_compounds2 tst_compounds3 tst_opaques tst_strings tst_strings2 tst_interops tst_interops4 tst_interops5 tst_interops6 tst_enums tst_coords tst_coords2 tst_coords3 tst_vars3 tst_vars4 tst_chunks tst_chunks2 tst_utf8 tst_fills tst_fills2 tst_fillbug tst_xplatform tst_xplatform2 tst_h_atts2 tst_endian_fill tst_atts t_type cdm_sea_soundings tst_camrun tst_vl tst_atts1 tst_atts2 tst_vars2 tst_files5 tst_files6 tst_sync tst_h_scalar tst_rename tst_h5_endians tst_atts_string_rewrite tst_hdf5_file_compat tst_fill_attr_vanish tst_rehash tst_h_strbug tst_h_refs renamegroup tst_empty_vlen_unlim tst_v2 test -z "tst_mpi_parallel.bin cdm_sea_soundings.nc bm_chunking.nc bm_radar.nc bm_radar1.nc radar_3d_compression_test.txt radar_3d_compression.txt radar_2d_compression.txt radar_3d_chunking.txt tst_floats_1D.cdl floats_1D_3.nc floats_1D.cdl tst_*.nc tst_floats2_*.cdl tst_ints2_*.cdl tst_shorts2_*.cdl tst_elena_*.cdl tst_simple*.cdl tst_chunks.cdl pr_A1.* tauu_A1.* usi_01.* thetau_01.* tst_*.nc tst_*.h5 tst_grp_rename.cdl tst_grp_rename.nc tst_grp_rename.dmp ref_grp_rename.cdl foo1.nc tst_interops2.h4 tst_h5_endians.nc tst_h4_lendian.h4 test.nc tst_atts_string_rewrite.nc tst_empty_vlen_unlim.nc tst_empty_vlen_lim.nc tst_parallel4_simplerw_coll.nc tst_fill_attr_vanish.nc tst_rehash.nc" || rm -f tst_mpi_parallel.bin cdm_sea_soundings.nc bm_chunking.nc bm_radar.nc bm_radar1.nc radar_3d_compression_test.txt radar_3d_compression.txt radar_2d_compression.txt radar_3d_chunking.txt tst_floats_1D.cdl floats_1D_3.nc floats_1D.cdl tst_*.nc tst_floats2_*.cdl tst_ints2_*.cdl tst_shorts2_*.cdl tst_elena_*.cdl tst_simple*.cdl tst_chunks.cdl pr_A1.* tauu_A1.* usi_01.* thetau_01.* tst_*.nc tst_*.h5 tst_grp_rename.cdl tst_grp_rename.nc tst_grp_rename.dmp ref_grp_rename.cdl foo1.nc tst_interops2.h4 tst_h5_endians.nc tst_h4_lendian.h4 test.nc tst_atts_string_rewrite.nc tst_empty_vlen_unlim.nc tst_empty_vlen_lim.nc tst_parallel4_simplerw_coll.nc tst_fill_attr_vanish.nc tst_rehash.nc rm -rf .libs _libs rm -f *.o test -z "tst_dims.log tst_dims2.log tst_dims3.log tst_files.log tst_files4.log tst_vars.log tst_varms.log tst_unlim_vars.log tst_converts.log tst_converts2.log tst_grps.log tst_grps2.log tst_compounds.log tst_compounds2.log tst_compounds3.log tst_opaques.log tst_strings.log tst_strings2.log tst_interops.log tst_interops4.log tst_interops5.log tst_interops6.log tst_enums.log tst_coords.log tst_coords2.log tst_coords3.log tst_vars3.log tst_vars4.log tst_chunks.log tst_chunks2.log tst_utf8.log tst_fills.log tst_fills2.log tst_fillbug.log tst_xplatform.log tst_xplatform2.log tst_h_atts2.log tst_endian_fill.log tst_atts.log t_type.log cdm_sea_soundings.log tst_camrun.log tst_vl.log tst_atts1.log tst_atts2.log tst_vars2.log tst_files5.log tst_files6.log tst_sync.log tst_h_scalar.log tst_rename.log tst_h5_endians.log tst_atts_string_rewrite.log tst_hdf5_file_compat.log tst_fill_attr_vanish.log tst_rehash.log tst_h_strbug.log tst_h_refs.log run_empty_vlen_test.sh.log tst_v2.log" || rm -f tst_dims.log tst_dims2.log tst_dims3.log tst_files.log tst_files4.log tst_vars.log tst_varms.log tst_unlim_vars.log tst_converts.log tst_converts2.log tst_grps.log tst_grps2.log tst_compounds.log tst_compounds2.log tst_compounds3.log tst_opaques.log tst_strings.log tst_strings2.log tst_interops.log tst_interops4.log tst_interops5.log tst_interops6.log tst_enums.log tst_coords.log tst_coords2.log tst_coords3.log tst_vars3.log tst_vars4.log tst_chunks.log tst_chunks2.log tst_utf8.log tst_fills.log tst_fills2.log tst_fillbug.log tst_xplatform.log tst_xplatform2.log tst_h_atts2.log tst_endian_fill.log tst_atts.log t_type.log cdm_sea_soundings.log tst_camrun.log tst_vl.log tst_atts1.log tst_atts2.log tst_vars2.log tst_files5.log tst_files6.log tst_sync.log tst_h_scalar.log tst_rename.log tst_h5_endians.log tst_atts_string_rewrite.log tst_hdf5_file_compat.log tst_fill_attr_vanish.log tst_rehash.log tst_h_strbug.log tst_h_refs.log run_empty_vlen_test.sh.log tst_v2.log test -z "tst_dims.trs tst_dims2.trs tst_dims3.trs tst_files.trs tst_files4.trs tst_vars.trs tst_varms.trs tst_unlim_vars.trs tst_converts.trs tst_converts2.trs tst_grps.trs tst_grps2.trs tst_compounds.trs tst_compounds2.trs tst_compounds3.trs tst_opaques.trs tst_strings.trs tst_strings2.trs tst_interops.trs tst_interops4.trs tst_interops5.trs tst_interops6.trs tst_enums.trs tst_coords.trs tst_coords2.trs tst_coords3.trs tst_vars3.trs tst_vars4.trs tst_chunks.trs tst_chunks2.trs tst_utf8.trs tst_fills.trs tst_fills2.trs tst_fillbug.trs tst_xplatform.trs tst_xplatform2.trs tst_h_atts2.trs tst_endian_fill.trs tst_atts.trs t_type.trs cdm_sea_soundings.trs tst_camrun.trs tst_vl.trs tst_atts1.trs tst_atts2.trs tst_vars2.trs tst_files5.trs tst_files6.trs tst_sync.trs tst_h_scalar.trs tst_rename.trs tst_h5_endians.trs tst_atts_string_rewrite.trs tst_hdf5_file_compat.trs tst_fill_attr_vanish.trs tst_rehash.trs tst_h_strbug.trs tst_h_refs.trs run_empty_vlen_test.sh.trs tst_v2.trs" || rm -f tst_dims.trs tst_dims2.trs tst_dims3.trs tst_files.trs tst_files4.trs tst_vars.trs tst_varms.trs tst_unlim_vars.trs tst_converts.trs tst_converts2.trs tst_grps.trs tst_grps2.trs tst_compounds.trs tst_compounds2.trs tst_compounds3.trs tst_opaques.trs tst_strings.trs tst_strings2.trs tst_interops.trs tst_interops4.trs tst_interops5.trs tst_interops6.trs tst_enums.trs tst_coords.trs tst_coords2.trs tst_coords3.trs tst_vars3.trs tst_vars4.trs tst_chunks.trs tst_chunks2.trs tst_utf8.trs tst_fills.trs tst_fills2.trs tst_fillbug.trs tst_xplatform.trs tst_xplatform2.trs tst_h_atts2.trs tst_endian_fill.trs tst_atts.trs t_type.trs cdm_sea_soundings.trs tst_camrun.trs tst_vl.trs tst_atts1.trs tst_atts2.trs tst_vars2.trs tst_files5.trs tst_files6.trs tst_sync.trs tst_h_scalar.trs tst_rename.trs tst_h5_endians.trs tst_atts_string_rewrite.trs tst_hdf5_file_compat.trs tst_fill_attr_vanish.trs tst_rehash.trs tst_h_strbug.trs tst_h_refs.trs run_empty_vlen_test.sh.trs tst_v2.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/nc_test4' Making clean in docs make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/docs' Making clean in images make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/docs/images' rm -rf .libs _libs rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/docs/images' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/docs' test -z "doxyfile.stamp html latex man" || rm -f doxyfile.stamp html latex man rm -rf .libs _libs rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/docs' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/docs' Making clean in examples make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/examples' Making clean in C make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/examples/C' rm -f simple_xy_wr simple_xy_rd sfc_pres_temp_wr sfc_pres_temp_rd pres_temp_4D_wr pres_temp_4D_rd simple_nc4_wr simple_nc4_rd simple_xy_nc4_wr simple_xy_nc4_rd parallel_vara test -z "sfc_pres_temp.nc simple_xy.nc pres_temp_4D.nc simple_nc4.nc simple_xy_nc4.nc testfile.nc" || rm -f sfc_pres_temp.nc simple_xy.nc pres_temp_4D.nc simple_nc4.nc simple_xy_nc4.nc testfile.nc rm -rf .libs _libs rm -f *.o test -z "simple_xy_wr.log simple_xy_rd.log sfc_pres_temp_wr.log sfc_pres_temp_rd.log pres_temp_4D_wr.log pres_temp_4D_rd.log simple_nc4_wr.log simple_nc4_rd.log simple_xy_nc4_wr.log simple_xy_nc4_rd.log parallel_vara.log" || rm -f simple_xy_wr.log simple_xy_rd.log sfc_pres_temp_wr.log sfc_pres_temp_rd.log pres_temp_4D_wr.log pres_temp_4D_rd.log simple_nc4_wr.log simple_nc4_rd.log simple_xy_nc4_wr.log simple_xy_nc4_rd.log parallel_vara.log test -z "simple_xy_wr.trs simple_xy_rd.trs sfc_pres_temp_wr.trs sfc_pres_temp_rd.trs pres_temp_4D_wr.trs pres_temp_4D_rd.trs simple_nc4_wr.trs simple_nc4_rd.trs simple_xy_nc4_wr.trs simple_xy_nc4_rd.trs parallel_vara.trs" || rm -f simple_xy_wr.trs simple_xy_rd.trs sfc_pres_temp_wr.trs sfc_pres_temp_rd.trs pres_temp_4D_wr.trs pres_temp_4D_rd.trs simple_nc4_wr.trs simple_nc4_rd.trs simple_xy_nc4_wr.trs simple_xy_nc4_rd.trs parallel_vara.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/examples/C' Making clean in CDL make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/examples/CDL' test -z "simple_xy.nc sfc_pres_temp.nc pres_temp_4D.nc" || rm -f simple_xy.nc sfc_pres_temp.nc pres_temp_4D.nc rm -rf .libs _libs test -z "create_sample_files.sh.log do_comps.sh.log" || rm -f create_sample_files.sh.log do_comps.sh.log test -z "create_sample_files.sh.trs do_comps.sh.trs" || rm -f create_sample_files.sh.trs do_comps.sh.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/examples/CDL' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/examples' rm -rf .libs _libs rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/examples' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/examples' make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0' rm -rf .libs _libs rm -f *.lo make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0' Running Executable WITHOUT threads to time it out Executing: /usr/bin/make -j40 -l96.0 stdout: /usr/bin/make all-recursive make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0' Making all in include make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/include' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/include' Making all in h5_test make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/h5_test' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/h5_test' Making all in libdispatch make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libdispatch' /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dparallel.lo -MD -MP -MF .deps/libdispatch_la-dparallel.Tpo -c -o libdispatch_la-dparallel.lo `test -f 'dparallel.c' || echo './'`dparallel.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dcopy.lo -MD -MP -MF .deps/libdispatch_la-dcopy.Tpo -c -o libdispatch_la-dcopy.lo `test -f 'dcopy.c' || echo './'`dcopy.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dfile.lo -MD -MP -MF .deps/libdispatch_la-dfile.Tpo -c -o libdispatch_la-dfile.lo `test -f 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libdispatch_la-denum.lo -MD -MP -MF .deps/libdispatch_la-denum.Tpo -c -o libdispatch_la-denum.lo `test -f 'denum.c' || echo './'`denum.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dopaque.lo -MD -MP -MF .deps/libdispatch_la-dopaque.Tpo -c -o libdispatch_la-dopaque.lo `test -f 'dopaque.c' || echo './'`dopaque.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-ncaux.lo -MD -MP -MF .deps/libdispatch_la-ncaux.Tpo -c -o libdispatch_la-ncaux.lo `test -f 'ncaux.c' || echo './'`ncaux.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -DDLL_EXPORT -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf2_la-dv2i.lo -MD -MP -MF .deps/libnetcdf2_la-dv2i.Tpo -c -o libnetcdf2_la-dv2i.lo `test -f 'dv2i.c' || echo './'`dv2i.c libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-ddim.lo -MD -MP -MF .deps/libdispatch_la-ddim.Tpo -c ddim.c -fPIC -DPIC -o .libs/libdispatch_la-ddim.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dvarget.lo -MD -MP -MF .deps/libdispatch_la-dvarget.Tpo -c dvarget.c -fPIC -DPIC -o .libs/libdispatch_la-dvarget.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dcopy.lo -MD -MP -MF .deps/libdispatch_la-dcopy.Tpo -c dcopy.c -fPIC -DPIC -o .libs/libdispatch_la-dcopy.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dvarput.lo -MD -MP -MF .deps/libdispatch_la-dvarput.Tpo -c dvarput.c -fPIC -DPIC -o .libs/libdispatch_la-dvarput.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dstring.lo -MD -MP -MF .deps/libdispatch_la-dstring.Tpo -c dstring.c -fPIC -DPIC -o .libs/libdispatch_la-dstring.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dvar.lo -MD -MP -MF .deps/libdispatch_la-dvar.Tpo -c dvar.c -fPIC -DPIC -o .libs/libdispatch_la-dvar.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-nc.lo -MD -MP -MF .deps/libdispatch_la-nc.Tpo -c nc.c -fPIC -DPIC -o .libs/libdispatch_la-nc.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dattinq.lo -MD -MP -MF .deps/libdispatch_la-dattinq.Tpo -c dattinq.c -fPIC -DPIC -o .libs/libdispatch_la-dattinq.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-nclog.lo -MD -MP -MF .deps/libdispatch_la-nclog.Tpo -c nclog.c -fPIC -DPIC -o .libs/libdispatch_la-nclog.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dvarinq.lo -MD -MP -MF .deps/libdispatch_la-dvarinq.Tpo -c dvarinq.c -fPIC -DPIC -o .libs/libdispatch_la-dvarinq.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dparallel.lo -MD -MP -MF .deps/libdispatch_la-dparallel.Tpo -c dparallel.c -fPIC -DPIC -o .libs/libdispatch_la-dparallel.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-drc.lo -MD -MP -MF .deps/libdispatch_la-drc.Tpo -c drc.c -fPIC -DPIC -o .libs/libdispatch_la-drc.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-ncaux.lo -MD -MP -MF .deps/libdispatch_la-ncaux.Tpo -c ncaux.c -fPIC -DPIC -o .libs/libdispatch_la-ncaux.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dfile.lo -MD -MP -MF .deps/libdispatch_la-dfile.Tpo -c dfile.c -fPIC -DPIC -o .libs/libdispatch_la-dfile.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-derror.lo -MD -MP -MF .deps/libdispatch_la-derror.Tpo -c derror.c -fPIC -DPIC -o .libs/libdispatch_la-derror.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-datt.lo -MD -MP -MF .deps/libdispatch_la-datt.Tpo -c datt.c -fPIC -DPIC -o .libs/libdispatch_la-datt.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dattput.lo -MD -MP -MF .deps/libdispatch_la-dattput.Tpo -c dattput.c -fPIC -DPIC -o .libs/libdispatch_la-dattput.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dutf8.lo -MD -MP -MF .deps/libdispatch_la-dutf8.Tpo -c dutf8.c -fPIC -DPIC -o .libs/libdispatch_la-dutf8.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dtype.lo -MD -MP -MF .deps/libdispatch_la-dtype.Tpo -c dtype.c -fPIC -DPIC -o .libs/libdispatch_la-dtype.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-ddispatch.lo -MD -MP -MF .deps/libdispatch_la-ddispatch.Tpo -c ddispatch.c -fPIC -DPIC -o .libs/libdispatch_la-ddispatch.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-ncuri.lo -MD -MP -MF .deps/libdispatch_la-ncuri.Tpo -c ncuri.c -fPIC -DPIC -o .libs/libdispatch_la-ncuri.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-nclistmgr.lo -MD -MP -MF .deps/libdispatch_la-nclistmgr.Tpo -c nclistmgr.c -fPIC -DPIC -o .libs/libdispatch_la-nclistmgr.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-utf8proc.lo -MD -MP -MF .deps/libdispatch_la-utf8proc.Tpo -c utf8proc.c -fPIC -DPIC -o .libs/libdispatch_la-utf8proc.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-ncbytes.lo -MD -MP -MF .deps/libdispatch_la-ncbytes.Tpo -c ncbytes.c -fPIC -DPIC -o .libs/libdispatch_la-ncbytes.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-nclist.lo -MD -MP -MF .deps/libdispatch_la-nclist.Tpo -c nclist.c -fPIC -DPIC -o .libs/libdispatch_la-nclist.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dgroup.lo -MD -MP -MF .deps/libdispatch_la-dgroup.Tpo -c dgroup.c -fPIC -DPIC -o .libs/libdispatch_la-dgroup.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-doffsets.lo -MD -MP -MF .deps/libdispatch_la-doffsets.Tpo -c doffsets.c -fPIC -DPIC -o .libs/libdispatch_la-doffsets.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-nctime.lo -MD -MP -MF .deps/libdispatch_la-nctime.Tpo -c nctime.c -fPIC -DPIC -o .libs/libdispatch_la-nctime.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dwinpath.lo -MD -MP -MF .deps/libdispatch_la-dwinpath.Tpo -c dwinpath.c -fPIC -DPIC -o .libs/libdispatch_la-dwinpath.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-denum.lo -MD -MP -MF .deps/libdispatch_la-denum.Tpo -c denum.c -fPIC -DPIC -o .libs/libdispatch_la-denum.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-nchashmap.lo -MD -MP -MF .deps/libdispatch_la-nchashmap.Tpo -c nchashmap.c -fPIC -DPIC -o .libs/libdispatch_la-nchashmap.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dcompound.lo -MD -MP -MF .deps/libdispatch_la-dcompound.Tpo -c dcompound.c -fPIC -DPIC -o .libs/libdispatch_la-dcompound.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dopaque.lo -MD -MP -MF .deps/libdispatch_la-dopaque.Tpo -c dopaque.c -fPIC -DPIC -o .libs/libdispatch_la-dopaque.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dinternal.lo -MD -MP -MF .deps/libdispatch_la-dinternal.Tpo -c dinternal.c -fPIC -DPIC -o .libs/libdispatch_la-dinternal.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dattget.lo -MD -MP -MF .deps/libdispatch_la-dattget.Tpo -c dattget.c -fPIC -DPIC -o .libs/libdispatch_la-dattget.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dvlen.lo -MD -MP -MF .deps/libdispatch_la-dvlen.Tpo -c dvlen.c -fPIC -DPIC -o .libs/libdispatch_la-dvlen.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -DDLL_EXPORT -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf2_la-dv2i.lo -MD -MP -MF .deps/libnetcdf2_la-dv2i.Tpo -c dv2i.c -fPIC -DPIC -o .libs/libnetcdf2_la-dv2i.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-nclog.lo -MD -MP -MF .deps/libdispatch_la-nclog.Tpo -c nclog.c -o libdispatch_la-nclog.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dstring.lo -MD -MP -MF .deps/libdispatch_la-dstring.Tpo -c dstring.c -o libdispatch_la-dstring.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dattinq.lo -MD -MP -MF .deps/libdispatch_la-dattinq.Tpo -c dattinq.c -o libdispatch_la-dattinq.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-datt.lo -MD -MP -MF .deps/libdispatch_la-datt.Tpo -c datt.c -o libdispatch_la-datt.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dparallel.lo -MD -MP -MF .deps/libdispatch_la-dparallel.Tpo -c dparallel.c -o libdispatch_la-dparallel.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-denum.lo -MD -MP -MF .deps/libdispatch_la-denum.Tpo -c denum.c -o libdispatch_la-denum.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dutf8.lo -MD -MP -MF .deps/libdispatch_la-dutf8.Tpo -c dutf8.c -o libdispatch_la-dutf8.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dinternal.lo -MD -MP -MF .deps/libdispatch_la-dinternal.Tpo -c dinternal.c -o libdispatch_la-dinternal.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-ddim.lo -MD -MP -MF .deps/libdispatch_la-ddim.Tpo -c ddim.c -o libdispatch_la-ddim.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-nc.lo -MD -MP -MF .deps/libdispatch_la-nc.Tpo -c nc.c -o libdispatch_la-nc.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-doffsets.lo -MD -MP -MF .deps/libdispatch_la-doffsets.Tpo -c doffsets.c -o libdispatch_la-doffsets.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dopaque.lo -MD -MP -MF .deps/libdispatch_la-dopaque.Tpo -c dopaque.c -o libdispatch_la-dopaque.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dtype.lo -MD -MP -MF .deps/libdispatch_la-dtype.Tpo -c dtype.c -o libdispatch_la-dtype.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-nclistmgr.lo -MD -MP -MF .deps/libdispatch_la-nclistmgr.Tpo -c nclistmgr.c -o libdispatch_la-nclistmgr.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dvlen.lo -MD -MP -MF .deps/libdispatch_la-dvlen.Tpo -c dvlen.c -o libdispatch_la-dvlen.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dwinpath.lo -MD -MP -MF .deps/libdispatch_la-dwinpath.Tpo -c dwinpath.c -o libdispatch_la-dwinpath.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dgroup.lo -MD -MP -MF .deps/libdispatch_la-dgroup.Tpo -c dgroup.c -o libdispatch_la-dgroup.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-derror.lo -MD -MP -MF .deps/libdispatch_la-derror.Tpo -c derror.c -o libdispatch_la-derror.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dattput.lo -MD -MP -MF .deps/libdispatch_la-dattput.Tpo -c dattput.c -o libdispatch_la-dattput.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dvar.lo -MD -MP -MF .deps/libdispatch_la-dvar.Tpo -c dvar.c -o libdispatch_la-dvar.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dvarinq.lo -MD -MP -MF .deps/libdispatch_la-dvarinq.Tpo -c dvarinq.c -o libdispatch_la-dvarinq.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dcompound.lo -MD -MP -MF .deps/libdispatch_la-dcompound.Tpo -c dcompound.c -o libdispatch_la-dcompound.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-ncbytes.lo -MD -MP -MF .deps/libdispatch_la-ncbytes.Tpo -c ncbytes.c -o libdispatch_la-ncbytes.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dattget.lo -MD -MP -MF .deps/libdispatch_la-dattget.Tpo -c dattget.c -o libdispatch_la-dattget.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-ddispatch.lo -MD -MP -MF .deps/libdispatch_la-ddispatch.Tpo -c ddispatch.c -o libdispatch_la-ddispatch.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-nchashmap.lo -MD -MP -MF .deps/libdispatch_la-nchashmap.Tpo -c nchashmap.c -o libdispatch_la-nchashmap.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-nclist.lo -MD -MP -MF .deps/libdispatch_la-nclist.Tpo -c nclist.c -o libdispatch_la-nclist.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-drc.lo -MD -MP -MF .deps/libdispatch_la-drc.Tpo -c drc.c -o libdispatch_la-drc.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-ncaux.lo -MD -MP -MF .deps/libdispatch_la-ncaux.Tpo -c ncaux.c -o libdispatch_la-ncaux.o >/dev/null 2>&1 mv -f .deps/libdispatch_la-datt.Tpo .deps/libdispatch_la-datt.Plo mv -f .deps/libdispatch_la-dstring.Tpo .deps/libdispatch_la-dstring.Plo mv -f .deps/libdispatch_la-dutf8.Tpo .deps/libdispatch_la-dutf8.Plo mv -f .deps/libdispatch_la-dattinq.Tpo .deps/libdispatch_la-dattinq.Plo mv -f .deps/libdispatch_la-denum.Tpo .deps/libdispatch_la-denum.Plo mv -f .deps/libdispatch_la-dinternal.Tpo .deps/libdispatch_la-dinternal.Plo mv -f .deps/libdispatch_la-dparallel.Tpo .deps/libdispatch_la-dparallel.Plo mv -f .deps/libdispatch_la-doffsets.Tpo .deps/libdispatch_la-doffsets.Plo libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dfile.lo -MD -MP -MF .deps/libdispatch_la-dfile.Tpo -c dfile.c -o libdispatch_la-dfile.o >/dev/null 2>&1 mv -f .deps/libdispatch_la-dopaque.Tpo .deps/libdispatch_la-dopaque.Plo mv -f .deps/libdispatch_la-nclog.Tpo .deps/libdispatch_la-nclog.Plo mv -f .deps/libdispatch_la-nclistmgr.Tpo .deps/libdispatch_la-nclistmgr.Plo mv -f .deps/libdispatch_la-ddim.Tpo .deps/libdispatch_la-ddim.Plo mv -f .deps/libdispatch_la-dtype.Tpo .deps/libdispatch_la-dtype.Plo mv -f .deps/libdispatch_la-dwinpath.Tpo .deps/libdispatch_la-dwinpath.Plo libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dcopy.lo -MD -MP -MF .deps/libdispatch_la-dcopy.Tpo -c dcopy.c -o libdispatch_la-dcopy.o >/dev/null 2>&1 mv -f .deps/libdispatch_la-nc.Tpo .deps/libdispatch_la-nc.Plo mv -f .deps/libdispatch_la-dgroup.Tpo .deps/libdispatch_la-dgroup.Plo mv -f .deps/libdispatch_la-dvlen.Tpo .deps/libdispatch_la-dvlen.Plo mv -f .deps/libdispatch_la-derror.Tpo .deps/libdispatch_la-derror.Plo mv -f .deps/libdispatch_la-dcompound.Tpo .deps/libdispatch_la-dcompound.Plo mv -f .deps/libdispatch_la-dvarinq.Tpo .deps/libdispatch_la-dvarinq.Plo mv -f .deps/libdispatch_la-dattput.Tpo .deps/libdispatch_la-dattput.Plo mv -f .deps/libdispatch_la-dattget.Tpo .deps/libdispatch_la-dattget.Plo libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -DDLL_EXPORT -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf2_la-dv2i.lo -MD -MP -MF .deps/libnetcdf2_la-dv2i.Tpo -c dv2i.c -o libnetcdf2_la-dv2i.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-ncuri.lo -MD -MP -MF .deps/libdispatch_la-ncuri.Tpo -c ncuri.c -o libdispatch_la-ncuri.o >/dev/null 2>&1 mv -f .deps/libdispatch_la-ddispatch.Tpo .deps/libdispatch_la-ddispatch.Plo mv -f .deps/libdispatch_la-dvar.Tpo .deps/libdispatch_la-dvar.Plo mv -f .deps/libdispatch_la-nchashmap.Tpo .deps/libdispatch_la-nchashmap.Plo mv -f .deps/libdispatch_la-ncbytes.Tpo .deps/libdispatch_la-ncbytes.Plo mv -f .deps/libdispatch_la-nclist.Tpo .deps/libdispatch_la-nclist.Plo mv -f .deps/libdispatch_la-ncaux.Tpo .deps/libdispatch_la-ncaux.Plo mv -f .deps/libdispatch_la-drc.Tpo .deps/libdispatch_la-drc.Plo mv -f .deps/libdispatch_la-dfile.Tpo .deps/libdispatch_la-dfile.Plo libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-nctime.lo -MD -MP -MF .deps/libdispatch_la-nctime.Tpo -c nctime.c -o libdispatch_la-nctime.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dvarget.lo -MD -MP -MF .deps/libdispatch_la-dvarget.Tpo -c dvarget.c -o libdispatch_la-dvarget.o >/dev/null 2>&1 mv -f .deps/libdispatch_la-dcopy.Tpo .deps/libdispatch_la-dcopy.Plo libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dvarput.lo -MD -MP -MF .deps/libdispatch_la-dvarput.Tpo -c dvarput.c -o libdispatch_la-dvarput.o >/dev/null 2>&1 mv -f .deps/libnetcdf2_la-dv2i.Tpo .deps/libnetcdf2_la-dv2i.Plo /bin/bash ../libtool --tag=CC --mode=link /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -o libnetcdf2.la libnetcdf2_la-dv2i.lo -lpnetcdf -lm -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lpnetcdf -lstdc++ -ldl -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lmpifort -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lgfortran -lm -lgcc_s -lquadmath -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lz -lm -lstdc++ -ldl mv -f .deps/libdispatch_la-ncuri.Tpo .deps/libdispatch_la-ncuri.Plo libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-utf8proc.lo -MD -MP -MF .deps/libdispatch_la-utf8proc.Tpo -c utf8proc.c -o libdispatch_la-utf8proc.o >/dev/null 2>&1 mv -f .deps/libdispatch_la-nctime.Tpo .deps/libdispatch_la-nctime.Plo mv -f .deps/libdispatch_la-dvarget.Tpo .deps/libdispatch_la-dvarget.Plo libtool: link: /usr/bin/ar cru .libs/libnetcdf2.a .libs/libnetcdf2_la-dv2i.o libtool: link: ranlib .libs/libnetcdf2.a mv -f .deps/libdispatch_la-dvarput.Tpo .deps/libdispatch_la-dvarput.Plo libtool: link: ( cd ".libs" && rm -f "libnetcdf2.la" && ln -s "../libnetcdf2.la" "libnetcdf2.la" ) mv -f .deps/libdispatch_la-utf8proc.Tpo .deps/libdispatch_la-utf8proc.Plo /bin/bash ../libtool --tag=CC --mode=link /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -o libdispatch.la libdispatch_la-dparallel.lo libdispatch_la-dcopy.lo libdispatch_la-dfile.lo libdispatch_la-ddim.lo libdispatch_la-datt.lo libdispatch_la-dattinq.lo libdispatch_la-dattput.lo libdispatch_la-dattget.lo libdispatch_la-derror.lo libdispatch_la-dvar.lo libdispatch_la-dvarget.lo libdispatch_la-dvarput.lo libdispatch_la-dvarinq.lo libdispatch_la-dinternal.lo libdispatch_la-ddispatch.lo libdispatch_la-dutf8.lo libdispatch_la-nclog.lo libdispatch_la-dstring.lo libdispatch_la-ncuri.lo libdispatch_la-nclist.lo libdispatch_la-ncbytes.lo libdispatch_la-nchashmap.lo libdispatch_la-nctime.lo libdispatch_la-nc.lo libdispatch_la-nclistmgr.lo libdispatch_la-drc.lo libdispatch_la-doffsets.lo libdispatch_la-dwinpath.lo libdispatch_la-utf8proc.lo libdispatch_la-dgroup.lo libdispatch_la-dvlen.lo libdispatch_la-dcompound.lo libdispatch_la-dtype.lo libdispatch_la-denum.lo libdispatch_la-dopaque.lo libdispatch_la-ncaux.lo -lpnetcdf -lm -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lpnetcdf -lstdc++ -ldl -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lmpifort -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lgfortran -lm -lgcc_s -lquadmath -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lz -lm -lstdc++ -ldl libtool: link: /usr/bin/ar cru .libs/libdispatch.a .libs/libdispatch_la-dparallel.o .libs/libdispatch_la-dcopy.o .libs/libdispatch_la-dfile.o .libs/libdispatch_la-ddim.o .libs/libdispatch_la-datt.o .libs/libdispatch_la-dattinq.o .libs/libdispatch_la-dattput.o .libs/libdispatch_la-dattget.o .libs/libdispatch_la-derror.o .libs/libdispatch_la-dvar.o .libs/libdispatch_la-dvarget.o .libs/libdispatch_la-dvarput.o .libs/libdispatch_la-dvarinq.o .libs/libdispatch_la-dinternal.o .libs/libdispatch_la-ddispatch.o .libs/libdispatch_la-dutf8.o .libs/libdispatch_la-nclog.o .libs/libdispatch_la-dstring.o .libs/libdispatch_la-ncuri.o .libs/libdispatch_la-nclist.o .libs/libdispatch_la-ncbytes.o .libs/libdispatch_la-nchashmap.o .libs/libdispatch_la-nctime.o .libs/libdispatch_la-nc.o .libs/libdispatch_la-nclistmgr.o .libs/libdispatch_la-drc.o .libs/libdispatch_la-doffsets.o .libs/libdispatch_la-dwinpath.o .libs/libdispatch_la-utf8proc.o .libs/libdispatch_la-dgroup.o .libs/libdispatch_la-dvlen.o .libs/libdispatch_la-dcompound.o .libs/libdispatch_la-dtype.o .libs/libdispatch_la-denum.o .libs/libdispatch_la-dopaque.o .libs/libdispatch_la-ncaux.o libtool: link: ranlib .libs/libdispatch.a libtool: link: ( cd ".libs" && rm -f "libdispatch.la" && ln -s "../libdispatch.la" "libdispatch.la" ) make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libdispatch' Making all in libsrc make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libsrc' /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-v1hpg.lo -MD -MP -MF .deps/libnetcdf3_la-v1hpg.Tpo -c -o libnetcdf3_la-v1hpg.lo `test -f 'v1hpg.c' || echo './'`v1hpg.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-putget.lo -MD -MP -MF .deps/libnetcdf3_la-putget.Tpo -c -o libnetcdf3_la-putget.lo `test -f 'putget.c' || echo './'`putget.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-attr.lo -MD -MP -MF .deps/libnetcdf3_la-attr.Tpo -c -o libnetcdf3_la-attr.lo `test -f 'attr.c' || echo './'`attr.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-nc3dispatch.lo -MD -MP -MF .deps/libnetcdf3_la-nc3dispatch.Tpo -c -o libnetcdf3_la-nc3dispatch.lo `test -f 'nc3dispatch.c' || echo './'`nc3dispatch.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-nc3internal.lo -MD -MP -MF .deps/libnetcdf3_la-nc3internal.Tpo -c -o libnetcdf3_la-nc3internal.lo `test -f 'nc3internal.c' || echo './'`nc3internal.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-var.lo -MD -MP -MF .deps/libnetcdf3_la-var.Tpo -c -o libnetcdf3_la-var.lo `test -f 'var.c' || echo './'`var.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-dim.lo -MD -MP -MF .deps/libnetcdf3_la-dim.Tpo -c -o libnetcdf3_la-dim.lo `test -f 'dim.c' || echo './'`dim.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-ncx.lo -MD -MP -MF .deps/libnetcdf3_la-ncx.Tpo -c -o libnetcdf3_la-ncx.lo `test -f 'ncx.c' || echo './'`ncx.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-nc_hashmap.lo -MD -MP -MF .deps/libnetcdf3_la-nc_hashmap.Tpo -c -o libnetcdf3_la-nc_hashmap.lo `test -f 'nc_hashmap.c' || echo './'`nc_hashmap.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-lookup3.lo -MD -MP -MF .deps/libnetcdf3_la-lookup3.Tpo -c -o libnetcdf3_la-lookup3.lo `test -f 'lookup3.c' || echo './'`lookup3.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-ncio.lo -MD -MP -MF .deps/libnetcdf3_la-ncio.Tpo -c -o libnetcdf3_la-ncio.lo `test -f 'ncio.c' || echo './'`ncio.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-memio.lo -MD -MP -MF .deps/libnetcdf3_la-memio.Tpo -c -o libnetcdf3_la-memio.lo `test -f 'memio.c' || echo './'`memio.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-posixio.lo -MD -MP -MF .deps/libnetcdf3_la-posixio.Tpo -c -o libnetcdf3_la-posixio.lo `test -f 'posixio.c' || echo './'`posixio.c libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-v1hpg.lo -MD -MP -MF .deps/libnetcdf3_la-v1hpg.Tpo -c v1hpg.c -fPIC -DPIC -o .libs/libnetcdf3_la-v1hpg.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-putget.lo -MD -MP -MF .deps/libnetcdf3_la-putget.Tpo -c putget.c -fPIC -DPIC -o .libs/libnetcdf3_la-putget.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-nc3dispatch.lo -MD -MP -MF .deps/libnetcdf3_la-nc3dispatch.Tpo -c nc3dispatch.c -fPIC -DPIC -o .libs/libnetcdf3_la-nc3dispatch.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-nc3internal.lo -MD -MP -MF .deps/libnetcdf3_la-nc3internal.Tpo -c nc3internal.c -fPIC -DPIC -o .libs/libnetcdf3_la-nc3internal.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-memio.lo -MD -MP -MF .deps/libnetcdf3_la-memio.Tpo -c memio.c -fPIC -DPIC -o .libs/libnetcdf3_la-memio.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-nc_hashmap.lo -MD -MP -MF .deps/libnetcdf3_la-nc_hashmap.Tpo -c nc_hashmap.c -fPIC -DPIC -o .libs/libnetcdf3_la-nc_hashmap.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-lookup3.lo -MD -MP -MF .deps/libnetcdf3_la-lookup3.Tpo -c lookup3.c -fPIC -DPIC -o .libs/libnetcdf3_la-lookup3.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-attr.lo -MD -MP -MF .deps/libnetcdf3_la-attr.Tpo -c attr.c -fPIC -DPIC -o .libs/libnetcdf3_la-attr.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-dim.lo -MD -MP -MF .deps/libnetcdf3_la-dim.Tpo -c dim.c -fPIC -DPIC -o .libs/libnetcdf3_la-dim.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-posixio.lo -MD -MP -MF .deps/libnetcdf3_la-posixio.Tpo -c posixio.c -fPIC -DPIC -o .libs/libnetcdf3_la-posixio.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-var.lo -MD -MP -MF .deps/libnetcdf3_la-var.Tpo -c var.c -fPIC -DPIC -o .libs/libnetcdf3_la-var.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-ncx.lo -MD -MP -MF .deps/libnetcdf3_la-ncx.Tpo -c ncx.c -fPIC -DPIC -o .libs/libnetcdf3_la-ncx.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-ncio.lo -MD -MP -MF .deps/libnetcdf3_la-ncio.Tpo -c ncio.c -fPIC -DPIC -o .libs/libnetcdf3_la-ncio.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-ncio.lo -MD -MP -MF .deps/libnetcdf3_la-ncio.Tpo -c ncio.c -o libnetcdf3_la-ncio.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-lookup3.lo -MD -MP -MF .deps/libnetcdf3_la-lookup3.Tpo -c lookup3.c -o libnetcdf3_la-lookup3.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-dim.lo -MD -MP -MF .deps/libnetcdf3_la-dim.Tpo -c dim.c -o libnetcdf3_la-dim.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-memio.lo -MD -MP -MF .deps/libnetcdf3_la-memio.Tpo -c memio.c -o libnetcdf3_la-memio.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-nc3dispatch.lo -MD -MP -MF .deps/libnetcdf3_la-nc3dispatch.Tpo -c nc3dispatch.c -o libnetcdf3_la-nc3dispatch.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-nc_hashmap.lo -MD -MP -MF .deps/libnetcdf3_la-nc_hashmap.Tpo -c nc_hashmap.c -o libnetcdf3_la-nc_hashmap.o >/dev/null 2>&1 mv -f .deps/libnetcdf3_la-ncio.Tpo .deps/libnetcdf3_la-ncio.Plo libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-var.lo -MD -MP -MF .deps/libnetcdf3_la-var.Tpo -c var.c -o libnetcdf3_la-var.o >/dev/null 2>&1 mv -f .deps/libnetcdf3_la-lookup3.Tpo .deps/libnetcdf3_la-lookup3.Plo libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-attr.lo -MD -MP -MF .deps/libnetcdf3_la-attr.Tpo -c attr.c -o libnetcdf3_la-attr.o >/dev/null 2>&1 mv -f .deps/libnetcdf3_la-dim.Tpo .deps/libnetcdf3_la-dim.Plo libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-nc3internal.lo -MD -MP -MF .deps/libnetcdf3_la-nc3internal.Tpo -c nc3internal.c -o libnetcdf3_la-nc3internal.o >/dev/null 2>&1 mv -f .deps/libnetcdf3_la-nc3dispatch.Tpo .deps/libnetcdf3_la-nc3dispatch.Plo libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-posixio.lo -MD -MP -MF .deps/libnetcdf3_la-posixio.Tpo -c posixio.c -o libnetcdf3_la-posixio.o >/dev/null 2>&1 mv -f .deps/libnetcdf3_la-memio.Tpo .deps/libnetcdf3_la-memio.Plo mv -f .deps/libnetcdf3_la-nc_hashmap.Tpo .deps/libnetcdf3_la-nc_hashmap.Plo libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-v1hpg.lo -MD -MP -MF .deps/libnetcdf3_la-v1hpg.Tpo -c v1hpg.c -o libnetcdf3_la-v1hpg.o >/dev/null 2>&1 mv -f .deps/libnetcdf3_la-var.Tpo .deps/libnetcdf3_la-var.Plo mv -f .deps/libnetcdf3_la-attr.Tpo .deps/libnetcdf3_la-attr.Plo mv -f .deps/libnetcdf3_la-nc3internal.Tpo .deps/libnetcdf3_la-nc3internal.Plo mv -f .deps/libnetcdf3_la-posixio.Tpo .deps/libnetcdf3_la-posixio.Plo mv -f .deps/libnetcdf3_la-v1hpg.Tpo .deps/libnetcdf3_la-v1hpg.Plo libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-putget.lo -MD -MP -MF .deps/libnetcdf3_la-putget.Tpo -c putget.c -o libnetcdf3_la-putget.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-ncx.lo -MD -MP -MF .deps/libnetcdf3_la-ncx.Tpo -c ncx.c -o libnetcdf3_la-ncx.o >/dev/null 2>&1 mv -f .deps/libnetcdf3_la-putget.Tpo .deps/libnetcdf3_la-putget.Plo mv -f .deps/libnetcdf3_la-ncx.Tpo .deps/libnetcdf3_la-ncx.Plo /bin/bash ../libtool --tag=CC --mode=link /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -o libnetcdf3.la libnetcdf3_la-v1hpg.lo libnetcdf3_la-putget.lo libnetcdf3_la-attr.lo libnetcdf3_la-nc3dispatch.lo libnetcdf3_la-nc3internal.lo libnetcdf3_la-var.lo libnetcdf3_la-dim.lo libnetcdf3_la-ncx.lo libnetcdf3_la-nc_hashmap.lo libnetcdf3_la-lookup3.lo libnetcdf3_la-ncio.lo libnetcdf3_la-memio.lo libnetcdf3_la-posixio.lo -lpnetcdf -lm -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lpnetcdf -lstdc++ -ldl -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lmpifort -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lgfortran -lm -lgcc_s -lquadmath -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lz -lm -lstdc++ -ldl libtool: link: /usr/bin/ar cru .libs/libnetcdf3.a .libs/libnetcdf3_la-v1hpg.o .libs/libnetcdf3_la-putget.o .libs/libnetcdf3_la-attr.o .libs/libnetcdf3_la-nc3dispatch.o .libs/libnetcdf3_la-nc3internal.o .libs/libnetcdf3_la-var.o .libs/libnetcdf3_la-dim.o .libs/libnetcdf3_la-ncx.o .libs/libnetcdf3_la-nc_hashmap.o .libs/libnetcdf3_la-lookup3.o .libs/libnetcdf3_la-ncio.o .libs/libnetcdf3_la-memio.o .libs/libnetcdf3_la-posixio.o libtool: link: ranlib .libs/libnetcdf3.a libtool: link: ( cd ".libs" && rm -f "libnetcdf3.la" && ln -s "../libnetcdf3.la" "libnetcdf3.la" ) make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libsrc' Making all in libsrc4 make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libsrc4' /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4dispatch.lo -MD -MP -MF .deps/libnetcdf4_la-nc4dispatch.Tpo -c -o libnetcdf4_la-nc4dispatch.lo `test -f 'nc4dispatch.c' || echo './'`nc4dispatch.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4attr.lo -MD -MP -MF .deps/libnetcdf4_la-nc4attr.Tpo -c -o libnetcdf4_la-nc4attr.lo `test -f 'nc4attr.c' || echo './'`nc4attr.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4dim.lo -MD -MP -MF .deps/libnetcdf4_la-nc4dim.Tpo -c -o libnetcdf4_la-nc4dim.lo `test -f 'nc4dim.c' || echo './'`nc4dim.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4file.lo -MD -MP -MF .deps/libnetcdf4_la-nc4file.Tpo -c -o libnetcdf4_la-nc4file.lo `test -f 'nc4file.c' || echo './'`nc4file.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4grp.lo -MD -MP -MF .deps/libnetcdf4_la-nc4grp.Tpo -c -o libnetcdf4_la-nc4grp.lo `test -f 'nc4grp.c' || echo './'`nc4grp.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4hdf.lo -MD -MP -MF .deps/libnetcdf4_la-nc4hdf.Tpo -c -o libnetcdf4_la-nc4hdf.lo `test -f 'nc4hdf.c' || echo './'`nc4hdf.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4internal.lo -MD -MP -MF .deps/libnetcdf4_la-nc4internal.Tpo -c -o libnetcdf4_la-nc4internal.lo `test -f 'nc4internal.c' || echo './'`nc4internal.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4type.lo -MD -MP -MF .deps/libnetcdf4_la-nc4type.Tpo -c -o libnetcdf4_la-nc4type.lo `test -f 'nc4type.c' || echo './'`nc4type.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4var.lo -MD -MP -MF .deps/libnetcdf4_la-nc4var.Tpo -c -o libnetcdf4_la-nc4var.lo `test -f 'nc4var.c' || echo './'`nc4var.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-ncfunc.lo -MD -MP -MF .deps/libnetcdf4_la-ncfunc.Tpo -c -o libnetcdf4_la-ncfunc.lo `test -f 'ncfunc.c' || echo './'`ncfunc.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-error4.lo -MD -MP -MF .deps/libnetcdf4_la-error4.Tpo -c -o libnetcdf4_la-error4.lo `test -f 'error4.c' || echo './'`error4.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4info.lo -MD -MP -MF .deps/libnetcdf4_la-nc4info.Tpo -c -o libnetcdf4_la-nc4info.lo `test -f 'nc4info.c' || echo './'`nc4info.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4printer.lo -MD -MP -MF .deps/libnetcdf4_la-nc4printer.Tpo -c -o libnetcdf4_la-nc4printer.lo `test -f 'nc4printer.c' || echo './'`nc4printer.c libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4file.lo -MD -MP -MF .deps/libnetcdf4_la-nc4file.Tpo -c nc4file.c -fPIC -DPIC -o .libs/libnetcdf4_la-nc4file.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4grp.lo -MD -MP -MF .deps/libnetcdf4_la-nc4grp.Tpo -c nc4grp.c -fPIC -DPIC -o .libs/libnetcdf4_la-nc4grp.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4dim.lo -MD -MP -MF .deps/libnetcdf4_la-nc4dim.Tpo -c nc4dim.c -fPIC -DPIC -o .libs/libnetcdf4_la-nc4dim.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4info.lo -MD -MP -MF .deps/libnetcdf4_la-nc4info.Tpo -c nc4info.c -fPIC -DPIC -o .libs/libnetcdf4_la-nc4info.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4hdf.lo -MD -MP -MF .deps/libnetcdf4_la-nc4hdf.Tpo -c nc4hdf.c -fPIC -DPIC -o .libs/libnetcdf4_la-nc4hdf.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4dispatch.lo -MD -MP -MF .deps/libnetcdf4_la-nc4dispatch.Tpo -c nc4dispatch.c -fPIC -DPIC -o .libs/libnetcdf4_la-nc4dispatch.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4type.lo -MD -MP -MF .deps/libnetcdf4_la-nc4type.Tpo -c nc4type.c -fPIC -DPIC -o .libs/libnetcdf4_la-nc4type.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4attr.lo -MD -MP -MF .deps/libnetcdf4_la-nc4attr.Tpo -c nc4attr.c -fPIC -DPIC -o .libs/libnetcdf4_la-nc4attr.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-error4.lo -MD -MP -MF .deps/libnetcdf4_la-error4.Tpo -c error4.c -fPIC -DPIC -o .libs/libnetcdf4_la-error4.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-ncfunc.lo -MD -MP -MF .deps/libnetcdf4_la-ncfunc.Tpo -c ncfunc.c -fPIC -DPIC -o .libs/libnetcdf4_la-ncfunc.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4var.lo -MD -MP -MF .deps/libnetcdf4_la-nc4var.Tpo -c nc4var.c -fPIC -DPIC -o .libs/libnetcdf4_la-nc4var.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4printer.lo -MD -MP -MF .deps/libnetcdf4_la-nc4printer.Tpo -c nc4printer.c -fPIC -DPIC -o .libs/libnetcdf4_la-nc4printer.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4internal.lo -MD -MP -MF .deps/libnetcdf4_la-nc4internal.Tpo -c nc4internal.c -fPIC -DPIC -o .libs/libnetcdf4_la-nc4internal.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4dispatch.lo -MD -MP -MF .deps/libnetcdf4_la-nc4dispatch.Tpo -c nc4dispatch.c -o libnetcdf4_la-nc4dispatch.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-error4.lo -MD -MP -MF .deps/libnetcdf4_la-error4.Tpo -c error4.c -o libnetcdf4_la-error4.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-ncfunc.lo -MD -MP -MF .deps/libnetcdf4_la-ncfunc.Tpo -c ncfunc.c -o libnetcdf4_la-ncfunc.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4info.lo -MD -MP -MF .deps/libnetcdf4_la-nc4info.Tpo -c nc4info.c -o libnetcdf4_la-nc4info.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4dim.lo -MD -MP -MF .deps/libnetcdf4_la-nc4dim.Tpo -c nc4dim.c -o libnetcdf4_la-nc4dim.o >/dev/null 2>&1 mv -f .deps/libnetcdf4_la-nc4dispatch.Tpo .deps/libnetcdf4_la-nc4dispatch.Plo libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4grp.lo -MD -MP -MF .deps/libnetcdf4_la-nc4grp.Tpo -c nc4grp.c -o libnetcdf4_la-nc4grp.o >/dev/null 2>&1 mv -f .deps/libnetcdf4_la-error4.Tpo .deps/libnetcdf4_la-error4.Plo libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4type.lo -MD -MP -MF .deps/libnetcdf4_la-nc4type.Tpo -c nc4type.c -o libnetcdf4_la-nc4type.o >/dev/null 2>&1 mv -f .deps/libnetcdf4_la-ncfunc.Tpo .deps/libnetcdf4_la-ncfunc.Plo libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4attr.lo -MD -MP -MF .deps/libnetcdf4_la-nc4attr.Tpo -c nc4attr.c -o libnetcdf4_la-nc4attr.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4printer.lo -MD -MP -MF .deps/libnetcdf4_la-nc4printer.Tpo -c nc4printer.c -o libnetcdf4_la-nc4printer.o >/dev/null 2>&1 mv -f .deps/libnetcdf4_la-nc4dim.Tpo .deps/libnetcdf4_la-nc4dim.Plo mv -f .deps/libnetcdf4_la-nc4info.Tpo .deps/libnetcdf4_la-nc4info.Plo libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4internal.lo -MD -MP -MF .deps/libnetcdf4_la-nc4internal.Tpo -c nc4internal.c -o libnetcdf4_la-nc4internal.o >/dev/null 2>&1 mv -f .deps/libnetcdf4_la-nc4grp.Tpo .deps/libnetcdf4_la-nc4grp.Plo mv -f .deps/libnetcdf4_la-nc4type.Tpo .deps/libnetcdf4_la-nc4type.Plo libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4var.lo -MD -MP -MF .deps/libnetcdf4_la-nc4var.Tpo -c nc4var.c -o libnetcdf4_la-nc4var.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4file.lo -MD -MP -MF .deps/libnetcdf4_la-nc4file.Tpo -c nc4file.c -o libnetcdf4_la-nc4file.o >/dev/null 2>&1 mv -f .deps/libnetcdf4_la-nc4attr.Tpo .deps/libnetcdf4_la-nc4attr.Plo mv -f .deps/libnetcdf4_la-nc4printer.Tpo .deps/libnetcdf4_la-nc4printer.Plo mv -f .deps/libnetcdf4_la-nc4internal.Tpo .deps/libnetcdf4_la-nc4internal.Plo mv -f .deps/libnetcdf4_la-nc4var.Tpo .deps/libnetcdf4_la-nc4var.Plo mv -f .deps/libnetcdf4_la-nc4file.Tpo .deps/libnetcdf4_la-nc4file.Plo libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4hdf.lo -MD -MP -MF .deps/libnetcdf4_la-nc4hdf.Tpo -c nc4hdf.c -o libnetcdf4_la-nc4hdf.o >/dev/null 2>&1 mv -f .deps/libnetcdf4_la-nc4hdf.Tpo .deps/libnetcdf4_la-nc4hdf.Plo /bin/bash ../libtool --tag=CC --mode=link /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -o libnetcdf4.la libnetcdf4_la-nc4dispatch.lo libnetcdf4_la-nc4attr.lo libnetcdf4_la-nc4dim.lo libnetcdf4_la-nc4file.lo libnetcdf4_la-nc4grp.lo libnetcdf4_la-nc4hdf.lo libnetcdf4_la-nc4internal.lo libnetcdf4_la-nc4type.lo libnetcdf4_la-nc4var.lo libnetcdf4_la-ncfunc.lo libnetcdf4_la-error4.lo libnetcdf4_la-nc4info.lo libnetcdf4_la-nc4printer.lo -lpnetcdf -lm -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lpnetcdf -lstdc++ -ldl -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lmpifort -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lgfortran -lm -lgcc_s -lquadmath -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lz -lm -lstdc++ -ldl libtool: link: /usr/bin/ar cru .libs/libnetcdf4.a .libs/libnetcdf4_la-nc4dispatch.o .libs/libnetcdf4_la-nc4attr.o .libs/libnetcdf4_la-nc4dim.o .libs/libnetcdf4_la-nc4file.o .libs/libnetcdf4_la-nc4grp.o .libs/libnetcdf4_la-nc4hdf.o .libs/libnetcdf4_la-nc4internal.o .libs/libnetcdf4_la-nc4type.o .libs/libnetcdf4_la-nc4var.o .libs/libnetcdf4_la-ncfunc.o .libs/libnetcdf4_la-error4.o .libs/libnetcdf4_la-nc4info.o .libs/libnetcdf4_la-nc4printer.o libtool: link: ranlib .libs/libnetcdf4.a libtool: link: ( cd ".libs" && rm -f "libnetcdf4.la" && ln -s "../libnetcdf4.la" "libnetcdf4.la" ) make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libsrc4' Making all in libsrcp make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libsrcp' /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdfp_la-ncpdispatch.lo -MD -MP -MF .deps/libnetcdfp_la-ncpdispatch.Tpo -c -o libnetcdfp_la-ncpdispatch.lo `test -f 'ncpdispatch.c' || echo './'`ncpdispatch.c libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdfp_la-ncpdispatch.lo -MD -MP -MF .deps/libnetcdfp_la-ncpdispatch.Tpo -c ncpdispatch.c -fPIC -DPIC -o .libs/libnetcdfp_la-ncpdispatch.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdfp_la-ncpdispatch.lo -MD -MP -MF .deps/libnetcdfp_la-ncpdispatch.Tpo -c ncpdispatch.c -o libnetcdfp_la-ncpdispatch.o >/dev/null 2>&1 mv -f .deps/libnetcdfp_la-ncpdispatch.Tpo .deps/libnetcdfp_la-ncpdispatch.Plo /bin/bash ../libtool --tag=CC --mode=link /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -o libnetcdfp.la libnetcdfp_la-ncpdispatch.lo -lpnetcdf -lm -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lpnetcdf -lstdc++ -ldl -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lmpifort -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lgfortran -lm -lgcc_s -lquadmath -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lz -lm -lstdc++ -ldl libtool: link: /usr/bin/ar cru .libs/libnetcdfp.a .libs/libnetcdfp_la-ncpdispatch.o libtool: link: ranlib .libs/libnetcdfp.a libtool: link: ( cd ".libs" && rm -f "libnetcdfp.la" && ln -s "../libnetcdfp.la" "libnetcdfp.la" ) make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libsrcp' Making all in liblib make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/liblib' /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I../libsrcp -I../libsrc4 -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf_la-nc_initialize.lo -MD -MP -MF .deps/libnetcdf_la-nc_initialize.Tpo -c -o libnetcdf_la-nc_initialize.lo `test -f 'nc_initialize.c' || echo './'`nc_initialize.c libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I../libsrcp -I../libsrc4 -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf_la-nc_initialize.lo -MD -MP -MF .deps/libnetcdf_la-nc_initialize.Tpo -c nc_initialize.c -fPIC -DPIC -o .libs/libnetcdf_la-nc_initialize.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I../libsrcp -I../libsrc4 -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf_la-nc_initialize.lo -MD -MP -MF .deps/libnetcdf_la-nc_initialize.Tpo -c nc_initialize.c -o libnetcdf_la-nc_initialize.o >/dev/null 2>&1 mv -f .deps/libnetcdf_la-nc_initialize.Tpo .deps/libnetcdf_la-nc_initialize.Plo /bin/bash ../libtool --tag=CC --mode=link /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -version-info 13:0:0 -o libnetcdf.la -rpath /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib libnetcdf_la-nc_initialize.lo ../libdispatch/libnetcdf2.la ../libdispatch/libdispatch.la ../libsrc/libnetcdf3.la ../libsrcp/libnetcdfp.la ../libsrc4/libnetcdf4.la -lpnetcdf -lm -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lpnetcdf -lstdc++ -ldl -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lmpifort -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lgfortran -lm -lgcc_s -lquadmath -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lz -lm -lstdc++ -ldl libtool: link: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -shared -fPIC -DPIC .libs/libnetcdf_la-nc_initialize.o -Wl,--whole-archive ../libdispatch/.libs/libnetcdf2.a ../libdispatch/.libs/libdispatch.a ../libsrc/.libs/libnetcdf3.a ../libsrcp/.libs/libnetcdfp.a ../libsrc4/.libs/libnetcdf4.a -Wl,--no-whole-archive -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libpnetcdf.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpicxx.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpifort.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpi.so -lbacktrace -lpthread -lrt -lgfortran -lgcc_s -lquadmath /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5hl_fortran.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5_fortran.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5_hl.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5.so -lz -lm -lstdc++ -ldl -fstack-protector -O3 -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -Wl,-rpath -Wl,/usr/lib/gcc/x86_64-linux-gnu/5 -Wl,-rpath -Wl,/usr/lib/x86_64-linux-gnu -Wl,-rpath -Wl,/lib/x86_64-linux-gnu -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -Wl,-soname -Wl,libnetcdf.so.13 -o .libs/libnetcdf.so.13.0.0 libtool: link: (cd ".libs" && rm -f "libnetcdf.so.13" && ln -s "libnetcdf.so.13.0.0" "libnetcdf.so.13") libtool: link: (cd ".libs" && rm -f "libnetcdf.so" && ln -s "libnetcdf.so.13.0.0" "libnetcdf.so") libtool: link: (cd .libs/libnetcdf.lax/libnetcdf2.a && /usr/bin/ar x "/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/liblib/../libdispatch/.libs/libnetcdf2.a") libtool: link: (cd .libs/libnetcdf.lax/libdispatch.a && /usr/bin/ar x "/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/liblib/../libdispatch/.libs/libdispatch.a") libtool: link: (cd .libs/libnetcdf.lax/libnetcdf3.a && /usr/bin/ar x "/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/liblib/../libsrc/.libs/libnetcdf3.a") libtool: link: (cd .libs/libnetcdf.lax/libnetcdfp.a && /usr/bin/ar x "/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/liblib/../libsrcp/.libs/libnetcdfp.a") libtool: link: (cd .libs/libnetcdf.lax/libnetcdf4.a && /usr/bin/ar x "/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/liblib/../libsrc4/.libs/libnetcdf4.a") libtool: link: /usr/bin/ar cru .libs/libnetcdf.a libnetcdf_la-nc_initialize.o .libs/libnetcdf.lax/libnetcdf2.a/libnetcdf2_la-dv2i.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-datt.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-dattget.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-dattinq.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-dattput.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-dcompound.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-dcopy.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-ddim.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-ddispatch.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-denum.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-derror.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-dfile.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-dgroup.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-dinternal.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-doffsets.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-dopaque.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-dparallel.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-drc.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-dstring.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-dtype.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-dutf8.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-dvar.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-dvarget.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-dvarinq.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-dvarput.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-dvlen.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-dwinpath.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-nc.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-ncaux.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-ncbytes.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-nchashmap.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-nclist.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-nclistmgr.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-nclog.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-nctime.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-ncuri.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-utf8proc.o .libs/libnetcdf.lax/libnetcdf3.a/libnetcdf3_la-attr.o .libs/libnetcdf.lax/libnetcdf3.a/libnetcdf3_la-dim.o .libs/libnetcdf.lax/libnetcdf3.a/libnetcdf3_la-lookup3.o .libs/libnetcdf.lax/libnetcdf3.a/libnetcdf3_la-memio.o .libs/libnetcdf.lax/libnetcdf3.a/libnetcdf3_la-nc3dispatch.o .libs/libnetcdf.lax/libnetcdf3.a/libnetcdf3_la-nc3internal.o .libs/libnetcdf.lax/libnetcdf3.a/libnetcdf3_la-nc_hashmap.o .libs/libnetcdf.lax/libnetcdf3.a/libnetcdf3_la-ncio.o .libs/libnetcdf.lax/libnetcdf3.a/libnetcdf3_la-ncx.o .libs/libnetcdf.lax/libnetcdf3.a/libnetcdf3_la-posixio.o .libs/libnetcdf.lax/libnetcdf3.a/libnetcdf3_la-putget.o .libs/libnetcdf.lax/libnetcdf3.a/libnetcdf3_la-v1hpg.o .libs/libnetcdf.lax/libnetcdf3.a/libnetcdf3_la-var.o .libs/libnetcdf.lax/libnetcdfp.a/libnetcdfp_la-ncpdispatch.o .libs/libnetcdf.lax/libnetcdf4.a/libnetcdf4_la-error4.o .libs/libnetcdf.lax/libnetcdf4.a/libnetcdf4_la-nc4attr.o .libs/libnetcdf.lax/libnetcdf4.a/libnetcdf4_la-nc4dim.o .libs/libnetcdf.lax/libnetcdf4.a/libnetcdf4_la-nc4dispatch.o .libs/libnetcdf.lax/libnetcdf4.a/libnetcdf4_la-nc4file.o .libs/libnetcdf.lax/libnetcdf4.a/libnetcdf4_la-nc4grp.o .libs/libnetcdf.lax/libnetcdf4.a/libnetcdf4_la-nc4hdf.o .libs/libnetcdf.lax/libnetcdf4.a/libnetcdf4_la-nc4info.o .libs/libnetcdf.lax/libnetcdf4.a/libnetcdf4_la-nc4internal.o .libs/libnetcdf.lax/libnetcdf4.a/libnetcdf4_la-nc4printer.o .libs/libnetcdf.lax/libnetcdf4.a/libnetcdf4_la-nc4type.o .libs/libnetcdf.lax/libnetcdf4.a/libnetcdf4_la-nc4var.o .libs/libnetcdf.lax/libnetcdf4.a/libnetcdf4_la-ncfunc.o libtool: link: ranlib .libs/libnetcdf.a libtool: link: rm -fr .libs/libnetcdf.lax libtool: link: ( cd ".libs" && rm -f "libnetcdf.la" && ln -s "../libnetcdf.la" "libnetcdf.la" ) make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/liblib' Making all in ncgen3 make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncgen3' depbase=`echo main.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT main.o -MD -MP -MF $depbase.Tpo -c -o main.o main.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo load.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT load.o -MD -MP -MF $depbase.Tpo -c -o load.o load.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo escapes.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT escapes.o -MD -MP -MF $depbase.Tpo -c -o escapes.o escapes.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo getfill.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT getfill.o -MD -MP -MF $depbase.Tpo -c -o getfill.o getfill.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo init.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT init.o -MD -MP -MF $depbase.Tpo -c -o init.o init.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo genlib.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT genlib.o -MD -MP -MF $depbase.Tpo -c -o genlib.o genlib.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo ncgentab.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT ncgentab.o -MD -MP -MF $depbase.Tpo -c -o ncgentab.o ncgentab.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/bash ../libtool --tag=CC --mode=link /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -o ncgen3 main.o load.o escapes.o getfill.o init.o genlib.o ncgentab.o ../liblib/libnetcdf.la -lpnetcdf -lm -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lpnetcdf -lstdc++ -ldl -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lmpifort -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lgfortran -lm -lgcc_s -lquadmath -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lz -lm -lstdc++ -ldl libtool: link: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -o .libs/ncgen3 main.o load.o escapes.o getfill.o init.o genlib.o ncgentab.o -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -Wl,-rpath -Wl,/usr/lib/gcc/x86_64-linux-gnu/5 -Wl,-rpath -Wl,/usr/lib/x86_64-linux-gnu -Wl,-rpath -Wl,/lib/x86_64-linux-gnu -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib ../liblib/.libs/libnetcdf.so -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libpnetcdf.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpicxx.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpifort.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpi.so -lbacktrace -lpthread -lrt -lgfortran -lgcc_s -lquadmath /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5hl_fortran.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5_fortran.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5_hl.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5.so -lz -lm -lstdc++ -ldl -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncgen3' Making all in ncgen make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncgen' depbase=`echo generate.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT generate.o -MD -MP -MF $depbase.Tpo -c -o generate.o generate.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo main.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT main.o -MD -MP -MF $depbase.Tpo -c -o main.o main.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo cdata.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT cdata.o -MD -MP -MF $depbase.Tpo -c -o cdata.o cdata.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo bindata.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT bindata.o -MD -MP -MF $depbase.Tpo -c -o bindata.o bindata.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo genchar.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT genchar.o -MD -MP -MF $depbase.Tpo -c -o genchar.o genchar.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo cvt.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT cvt.o -MD -MP -MF $depbase.Tpo -c -o cvt.o cvt.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo data.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT data.o -MD -MP -MF $depbase.Tpo -c -o data.o data.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo debug.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT debug.o -MD -MP -MF $depbase.Tpo -c -o debug.o debug.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo escapes.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT escapes.o -MD -MP -MF $depbase.Tpo -c -o escapes.o escapes.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo genc.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT genc.o -MD -MP -MF $depbase.Tpo -c -o genc.o genc.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo genbin.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT genbin.o -MD -MP -MF $depbase.Tpo -c -o genbin.o genbin.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo generr.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT generr.o -MD -MP -MF $depbase.Tpo -c -o generr.o generr.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo genlib.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT genlib.o -MD -MP -MF $depbase.Tpo -c -o genlib.o genlib.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo getfill.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT getfill.o -MD -MP -MF $depbase.Tpo -c -o getfill.o getfill.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo odom.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT odom.o -MD -MP -MF $depbase.Tpo -c -o odom.o odom.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo semantics.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT semantics.o -MD -MP -MF $depbase.Tpo -c -o semantics.o semantics.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo dump.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT dump.o -MD -MP -MF $depbase.Tpo -c -o dump.o dump.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo util.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT util.o -MD -MP -MF $depbase.Tpo -c -o util.o util.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo bytebuffer.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT bytebuffer.o -MD -MP -MF $depbase.Tpo -c -o bytebuffer.o bytebuffer.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo list.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT list.o -MD -MP -MF $depbase.Tpo -c -o list.o list.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo genf77.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT genf77.o -MD -MP -MF $depbase.Tpo -c -o genf77.o genf77.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo f77data.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT f77data.o -MD -MP -MF $depbase.Tpo -c -o f77data.o f77data.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo genj.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT genj.o -MD -MP -MF $depbase.Tpo -c -o genj.o genj.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo jdata.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT jdata.o -MD -MP -MF $depbase.Tpo -c -o jdata.o jdata.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo nc_iter.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT nc_iter.o -MD -MP -MF $depbase.Tpo -c -o nc_iter.o nc_iter.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo ncgeny.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT ncgeny.o -MD -MP -MF $depbase.Tpo -c -o ncgeny.o ncgeny.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/bash ../libtool --tag=CC --mode=link /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -o ncgen generate.o main.o cdata.o bindata.o genchar.o cvt.o data.o debug.o escapes.o genc.o genbin.o generr.o genlib.o getfill.o odom.o semantics.o dump.o util.o bytebuffer.o list.o genf77.o f77data.o genj.o jdata.o nc_iter.o ncgeny.o ../liblib/libnetcdf.la -lpnetcdf -lm -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lpnetcdf -lstdc++ -ldl -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lmpifort -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lgfortran -lm -lgcc_s -lquadmath -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lz -lm -lstdc++ -ldl libtool: link: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -o .libs/ncgen generate.o main.o cdata.o bindata.o genchar.o cvt.o data.o debug.o escapes.o genc.o genbin.o generr.o genlib.o getfill.o odom.o semantics.o dump.o util.o bytebuffer.o list.o genf77.o f77data.o genj.o jdata.o nc_iter.o ncgeny.o -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -Wl,-rpath -Wl,/usr/lib/gcc/x86_64-linux-gnu/5 -Wl,-rpath -Wl,/usr/lib/x86_64-linux-gnu -Wl,-rpath -Wl,/lib/x86_64-linux-gnu -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib ../liblib/.libs/libnetcdf.so -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libpnetcdf.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpicxx.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpifort.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpi.so -lbacktrace -lpthread -lrt -lgfortran -lgcc_s -lquadmath /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5hl_fortran.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5_fortran.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5_hl.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5.so -lz -lm -lstdc++ -ldl -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncgen' Making all in ncdump make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump' /usr/bin/make all-recursive make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump' Making all in cdl make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump/cdl' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump/cdl' Making all in expected make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump/expected' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump/expected' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump' depbase=`echo ncdump.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT ncdump.o -MD -MP -MF $depbase.Tpo -c -o ncdump.o ncdump.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo vardata.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT vardata.o -MD -MP -MF $depbase.Tpo -c -o vardata.o vardata.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo dumplib.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT dumplib.o -MD -MP -MF $depbase.Tpo -c -o dumplib.o dumplib.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo indent.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT indent.o -MD -MP -MF $depbase.Tpo -c -o indent.o indent.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo nctime0.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT nctime0.o -MD -MP -MF $depbase.Tpo -c -o nctime0.o nctime0.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo utils.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT utils.o -MD -MP -MF $depbase.Tpo -c -o utils.o utils.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo nciter.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT nciter.o -MD -MP -MF $depbase.Tpo -c -o nciter.o nciter.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo nccopy.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT nccopy.o -MD -MP -MF $depbase.Tpo -c -o nccopy.o nccopy.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo chunkspec.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT chunkspec.o -MD -MP -MF $depbase.Tpo -c -o chunkspec.o chunkspec.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo dimmap.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT dimmap.o -MD -MP -MF $depbase.Tpo -c -o dimmap.o dimmap.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo nc4print.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT nc4print.o -MD -MP -MF $depbase.Tpo -c -o nc4print.o nc4print.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/bash ../libtool --tag=CC --mode=link /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -o nc4print nc4print.o ../liblib/libnetcdf.la -lpnetcdf -lm -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lpnetcdf -lstdc++ -ldl -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lmpifort -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lgfortran -lm -lgcc_s -lquadmath -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lz -lm -lstdc++ -ldl /bin/bash ../libtool --tag=CC --mode=link /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -o nccopy nccopy.o nciter.o chunkspec.o utils.o dimmap.o ../liblib/libnetcdf.la -lpnetcdf -lm -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lpnetcdf -lstdc++ -ldl -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lmpifort -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lgfortran -lm -lgcc_s -lquadmath -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lz -lm -lstdc++ -ldl libtool: link: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -o .libs/nc4print nc4print.o -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -Wl,-rpath -Wl,/usr/lib/gcc/x86_64-linux-gnu/5 -Wl,-rpath -Wl,/usr/lib/x86_64-linux-gnu -Wl,-rpath -Wl,/lib/x86_64-linux-gnu -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib ../liblib/.libs/libnetcdf.so -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libpnetcdf.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpicxx.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpifort.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpi.so -lbacktrace -lpthread -lrt -lgfortran -lgcc_s -lquadmath /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5hl_fortran.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5_fortran.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5_hl.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5.so -lz -lm -lstdc++ -ldl -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib /bin/bash ../libtool --tag=CC --mode=link /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -o ncdump ncdump.o vardata.o dumplib.o indent.o nctime0.o utils.o nciter.o ../liblib/libnetcdf.la -lpnetcdf -lm -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lpnetcdf -lstdc++ -ldl -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lmpifort -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lgfortran -lm -lgcc_s -lquadmath -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lz -lm -lstdc++ -ldl libtool: link: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -o .libs/nccopy nccopy.o nciter.o chunkspec.o utils.o dimmap.o -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -Wl,-rpath -Wl,/usr/lib/gcc/x86_64-linux-gnu/5 -Wl,-rpath -Wl,/usr/lib/x86_64-linux-gnu -Wl,-rpath -Wl,/lib/x86_64-linux-gnu -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib ../liblib/.libs/libnetcdf.so -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libpnetcdf.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpicxx.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpifort.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpi.so -lbacktrace -lpthread -lrt -lgfortran -lgcc_s -lquadmath /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5hl_fortran.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5_fortran.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5_hl.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5.so -lz -lm -lstdc++ -ldl -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib libtool: link: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -o .libs/ncdump ncdump.o vardata.o dumplib.o indent.o nctime0.o utils.o nciter.o -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -Wl,-rpath -Wl,/usr/lib/gcc/x86_64-linux-gnu/5 -Wl,-rpath -Wl,/usr/lib/x86_64-linux-gnu -Wl,-rpath -Wl,/lib/x86_64-linux-gnu -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib ../liblib/.libs/libnetcdf.so -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libpnetcdf.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpicxx.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpifort.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpi.so -lbacktrace -lpthread -lrt -lgfortran -lgcc_s -lquadmath /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5hl_fortran.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5_fortran.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5_hl.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5.so -lz -lm -lstdc++ -ldl -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump' Making all in nctest make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/nctest' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/nctest' Making all in nc_test make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/nc_test' cp ../libsrc/ncx.c . make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/nc_test' Making all in nc_test4 make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/nc_test4' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/nc_test4' Making all in docs make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/docs' Making all in images make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/docs/images' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/docs/images' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/docs' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/docs' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/docs' Making all in examples make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/examples' Making all in C make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/examples/C' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/examples/C' Making all in CDL make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/examples/CDL' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/examples/CDL' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/examples' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/examples' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/examples' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0' =============================================================================== Running make install on NETCDF; this may take several minutes =============================================================================== Running Executable WITHOUT threads to time it out Executing: /usr/bin/make install stdout: Making install in include make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/include' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/include' make[2]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include' /usr/bin/install -c -m 644 netcdf.h netcdf_meta.h netcdf_par.h netcdf_mem.h '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/include' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/include' Making install in h5_test make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/h5_test' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/h5_test' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/h5_test' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/h5_test' Making install in libdispatch make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libdispatch' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libdispatch' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libdispatch' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libdispatch' Making install in libsrc make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libsrc' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libsrc' make[2]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3' /usr/bin/install -c -m 644 netcdf.3 '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libsrc' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libsrc' Making install in libsrc4 make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libsrc4' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libsrc4' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libsrc4' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libsrc4' Making install in libsrcp make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libsrcp' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libsrcp' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libsrcp' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libsrcp' Making install in liblib make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/liblib' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/liblib' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib' /bin/bash ../libtool --mode=install /usr/bin/install -c libnetcdf.la '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib' libtool: install: /usr/bin/install -c .libs/libnetcdf.so.13.0.0 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libnetcdf.so.13.0.0 libtool: install: (cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib && { ln -s -f libnetcdf.so.13.0.0 libnetcdf.so.13 || { rm -f libnetcdf.so.13 && ln -s libnetcdf.so.13.0.0 libnetcdf.so.13; }; }) libtool: install: (cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib && { ln -s -f libnetcdf.so.13.0.0 libnetcdf.so || { rm -f libnetcdf.so && ln -s libnetcdf.so.13.0.0 libnetcdf.so; }; }) libtool: install: /usr/bin/install -c .libs/libnetcdf.lai /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libnetcdf.la libtool: install: /usr/bin/install -c .libs/libnetcdf.a /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libnetcdf.a libtool: install: chmod 644 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libnetcdf.a libtool: install: ranlib /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libnetcdf.a libtool: finish: PATH="/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin:/home/dsu/Soft/PETSc/petsc-3.10.5/linux-gnu-opt/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/home/dsu/Soft/Paraview/ParaView-5.5.0/bin:/home/dsu/Soft/VisIt/visit2_13_0.linux-x86_64/bin:/home/dsu/Soft/Intel/parallel_studio_2019/bin:/home/dsu/Soft/Paraview/ParaView-5.5.0/bin:/home/dsu/Soft/VisIt/visit2_13_0.linux-x86_64/bin:/home/dsu/Soft/Intel/parallel_studio_2019/bin:/sbin" ldconfig -n /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the '-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the 'LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the 'LD_RUN_PATH' environment variable during linking - use the '-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to '/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/liblib' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/liblib' Making install in ncgen3 make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncgen3' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncgen3' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' /bin/bash ../libtool --mode=install /usr/bin/install -c ncgen3 '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' libtool: install: /usr/bin/install -c .libs/ncgen3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/ncgen3 /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man1' /usr/bin/install -c -m 644 ncgen3.1 '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man1' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncgen3' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncgen3' Making install in ncgen make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncgen' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncgen' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' /bin/bash ../libtool --mode=install /usr/bin/install -c ncgen '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' libtool: install: /usr/bin/install -c .libs/ncgen /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/ncgen /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man1' /usr/bin/install -c -m 644 ncgen.1 '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man1' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncgen' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncgen' Making install in ncdump make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump' /usr/bin/make install-recursive make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump' Making install in cdl make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump/cdl' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump/cdl' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump/cdl' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump/cdl' Making install in expected make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump/expected' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump/expected' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump/expected' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump/expected' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' /bin/bash ../libtool --mode=install /usr/bin/install -c ncdump nccopy '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' libtool: install: /usr/bin/install -c .libs/ncdump /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/ncdump libtool: install: /usr/bin/install -c .libs/nccopy /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/nccopy /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man1' /usr/bin/install -c -m 644 ncdump.1 nccopy.1 '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man1' make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump' Making install in nctest make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/nctest' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/nctest' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/nctest' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/nctest' Making install in nc_test make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/nc_test' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/nc_test' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/nc_test' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/nc_test' Making install in nc_test4 make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/nc_test4' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/nc_test4' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/nc_test4' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/nc_test4' Making install in docs make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/docs' Making install in images make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/docs/images' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/docs/images' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/docs/images' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/docs/images' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/docs' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/docs' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/docs' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/docs' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/docs' Making install in examples make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/examples' Making install in C make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/examples/C' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/examples/C' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/examples/C' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/examples/C' Making install in CDL make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/examples/CDL' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/examples/CDL' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/examples/CDL' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/examples/CDL' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/examples' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/examples' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/examples' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/examples' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/examples' make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' /usr/bin/install -c nc-config '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/pkgconfig' /usr/bin/install -c -m 644 netcdf.pc '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/pkgconfig' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib' /usr/bin/install -c -m 644 libnetcdf.settings '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib' /usr/bin/make install-data-hook make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0' +-------------------------------------------------------------+ | Congratulations! You have successfully installed netCDF! | | | | You can use script "nc-config" to find out the relevant | | compiler options to build your application. Enter | | | | nc-config --help | | | | for additional information. | | | | CAUTION: | | | | If you have not already run "make check", then we strongly | | recommend you do so. It does not take very long. | | | | Before using netCDF to store important data, test your | | build with "make check". | | | | NetCDF is tested nightly on many platforms at Unidata | | but your platform is probably different in some ways. | | | | If any tests fail, please see the netCDF web site: | | http://www.unidata.ucar.edu/software/netcdf/ | | | | NetCDF is developed and maintained at the Unidata Program | | Center. Unidata provides a broad array of data and software | | tools for use in geoscience education and research. | | http://www.unidata.ucar.edu | +-------------------------------------------------------------+ make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0' ********Output of running make on NETCDF follows ******* configure: netCDF 4.5.0 checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking target system type... x86_64-pc-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether /usr/bin/make sets $(MAKE)... yes checking whether /usr/bin/make supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... no configure: checking user options checking whether a win32 DLL is desired... no checking whether a NCIO_MINBLOCKSIZE was specified... 256 checking if fsync support is enabled... no checking if jna bug workaround is enabledd... no checking whether extra valgrind tests should be run... no checking whether we should build netCDF-4... yes checking do we require hdf5 dynamic-loading support... no checking whether reading of HDF4 SD files is to be enabled... no checking whether to fetch some sample HDF4 files from Unidata ftp site to test HDF4 reading (requires wget)... no checking whether we should attempt to install netcdf-fortran (EXPERIMENTAL)... no checking whether extra example tests should be run... no checking whether parallel IO tests should be run... no checking whether a default chunk size in bytes was specified... 4194304 checking whether a maximum per-variable cache size for HDF5 was specified... 67108864 checking whether a number of chunks for the default per-variable cache was specified... 10 checking whether a default file cache size for HDF5 was specified... 4194304 checking whether a default file cache maximum number of elements for HDF5 was specified... 1009 checking whether a default cache preemption for HDF5 was specified... 0.75 checking whether netCDF-4 logging is enabled... no checking whether DAP client(s) are to be built... no checking for style of include used by /usr/bin/make... GNU checking for gcc... /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc accepts -g... yes checking for /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc option to accept ISO C89... none needed checking whether /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc understands -c and -o together... yes checking dependency style of /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc... gcc3 checking for curl_easy_setopt in -lcurl... no checking whether dap remote testing should be enabled (default on)... no checking whether dap remote authorization testing should be enabled (default off)... no checking whether netcdf4 group names for DAP2 hould be enabled (default on)... yes configure: DAP2 groups is being disabled because DAP2 support is disabled or netcdf-4 disabled checking which remote test server(s) to use... remotetest.unidata.ucar.edu,jetstream.unidata.ucar.edu (defaults) checking whether the time-consuming dap tests should be enabled (default off)... no checking whether CDF5 support should be enabled (default off)... no checking whether netCDF extra tests should be run (developers only)... yes checking whether FFIO will be used... no checking whether STDIO will be used... no checking whether examples should be built... yes checking whether v2 netCDF API should be built... yes checking whether the ncgen/ncdump/nccopy should be built... yes checking whether test should be built and run... yes checking whether large file (> 2GB) tests should be run... no checking whether benchmarks should be run (experimental)... no checking whether extreme numbers should be used in tests... yes checking where to put large temp files if large file tests are run... . configure: finding C compiler checking for gcc... (cached) /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc checking whether we are using the GNU C compiler... (cached) yes checking whether /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc accepts -g... (cached) yes checking for /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc option to accept ISO C89... (cached) none needed checking whether /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc understands -c and -o together... (cached) yes checking dependency style of /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc... (cached) gcc3 checking for an ANSI C-conforming const... yes checking whether CURLOPT_USERNAME is defined... no checking whether CURLOPT_PASSWORD is defined... no checking whether CURLOPT_KEYPASSWD is defined... no checking whether CURLINFO_RESPONSE_CODE is defined... no checking whether CURLOPT_CHUNK_BGN_FUNCTION is defined... no configure: setting up libtool checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking how to run the C preprocessor... /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc supports -fno-rtti -fno-exceptions... no checking for /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc option to produce PIC... -fPIC -DPIC checking if /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc PIC flag -fPIC -DPIC works... yes checking if /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc static flag -static works... no checking if /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc supports -c -o file.o... yes checking if /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc supports -c -o file.o... (cached) yes checking whether the /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes configure: finding other utilities checking for m4... m4 checking for doxygen... no checking for dot... no checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no configure: displaying some results checking CPPFLAGS... -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include checking CC CFLAGS... /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 checking type /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc... /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc is /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc checking CXX... /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx checking CXXFLAGS... -fstack-protector -O3 checking type /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx... /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx is /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx checking FC... /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 checking FFLAGS... -ffree-line-length-0 -O3 checking type /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90... /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 is /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 checking F90... /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 checking FCFLAGS... -ffree-line-length-0 -O3 checking type /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90... /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 is /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 checking AR... /usr/bin/ar checking AR_FLAGS... cru checking type /usr/bin/ar... /usr/bin/ar is /usr/bin/ar checking NM... /usr/bin/nm -B checking NMFLAGS... configure: checking types, headers, and functions checking for stdlib.h... (cached) yes checking for sys/types.h... (cached) yes checking sys/dir.h usability... yes checking sys/dir.h presence... yes checking for sys/dir.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for ANSI C header files... (cached) yes checking for sys/wait.h that is POSIX.1 compatible... yes checking whether time.h and sys/time.h may both be included... yes checking locale.h usability... yes checking locale.h presence... yes checking for locale.h... yes checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/stat.h... (cached) yes checking getopt.h usability... yes checking getopt.h presence... yes checking for getopt.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for vprintf... yes checking for _doprnt... no checking sys/resource.h usability... yes checking sys/resource.h presence... yes checking for sys/resource.h... yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking ftw.h usability... yes checking ftw.h presence... yes checking for ftw.h... yes checking for strlcat... no checking for strerror... yes checking for snprintf... yes checking for strchr... yes checking for strrchr... yes checking for strcat... yes checking for strcpy... yes checking for strdup... yes checking for strcasecmp... yes checking for strtod... yes checking for strtoll... yes checking for strtoull... yes checking for strstr... yes checking for mkstemp... yes checking for rand... yes checking for random... yes checking for memcmp... yes checking for getrlimit... yes checking for gettimeofday... yes checking for fsync... yes checking for MPI_Comm_f2c... no checking whether in-memory files are enabled... yes checking for memmove... yes checking for getpagesize... yes checking for sysconf... yes checking whether mmap is enabled for in-memory files... no checking for stdlib.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/param.h... (cached) yes checking for getpagesize... (cached) yes checking for working mmap... yes checking for mremap... yes checking for size_t... yes checking for working alloca.h... yes checking for alloca... yes checking whether isnan is declared... yes checking whether isinf is declared... yes checking whether isfinite is declared... yes checking whether signbit is declared... yes checking for struct stat.st_blksize... yes checking for IEEE floating point format... yes checking for size_t... (cached) yes checking for ssize_t... yes checking for ptrdiff_t... yes checking for uchar... no checking for longlong... no checking for ushort... yes checking for uint... yes checking for int64... no checking for uint64 off_t... no checking for size_t... (cached) yes checking for off_t... yes checking whether char is unsigned... no checking whether byte ordering is bigendian... no checking size of short... 2 checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking size of float... 4 checking size of double... 8 checking size of off_t... 8 checking size of size_t... 8 checking size of unsigned long long... 8 checking size of unsigned long long... (cached) 8 checking size of unsigned char... 1 checking size of ushort... 2 checking size of uint... 4 checking size of ushort... (cached) 2 checking size of uint... (cached) 4 checking size of ptrdiff_t... 8 checking size of ssize_t... 8 checking size of void*... 8 checking for library containing deflate... none required checking for floor in -lm... yes checking for library containing H5Fflush... none required checking for library containing H5DSis_scale... none required checking hdf5.h usability... yes checking hdf5.h presence... yes checking for hdf5.h... yes checking for H5Pget_fapl_mpiposix... no checking for H5Pget_fapl_mpio... yes checking for H5Pset_deflate... yes checking for H5Z_SZIP... no checking for H5free_memory... yes checking for H5Pset_libver_bounds... yes checking for H5Pset_all_coll_metadata_ops... yes checking whether parallel io is enabled in hdf5... yes checking whether parallel I/O is enabled for netcdf-4... yes checking whether parallel I/O for classic files is to be enabled... yes checking for ncmpi_create in -lpnetcdf... yes checking Is libpnetcdf version 1.6.0 or later?... yes checking for full path of header file pnetcdf.h... /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include/pnetcdf.h checking if erange-fill is enabled in PnetCDF... configure: yes checking if relax-coord-bound is enabled in PnetCDF... configure: yes checking for unsigned long long int... yes checking for long long int... yes checking for unsigned long long int... (cached) yes checking what to call the output of the ftpbin target... binary-netcdf-4.5.0.tar /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx checking if libtool needs -no-undefined flag to build shared libraries... no checking value of LIBS... -lpnetcdf -lm -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lpnetcdf -lstdc++ -ldl -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lmpifort -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lgfortran -lm -lgcc_s -lquadmath -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lz -lm -lstdc++ -ldl checking If compilation is for use with JNA... no configure: generating header files and makefiles checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating test_common.sh config.status: creating Makefile config.status: creating nc-config config.status: creating netcdf.pc config.status: creating libnetcdf.settings config.status: creating postinstall.sh config.status: creating include/netcdf_meta.h config.status: creating include/Makefile config.status: creating h5_test/Makefile config.status: creating libsrc/Makefile config.status: creating libsrc4/Makefile config.status: creating libsrcp/Makefile config.status: creating ncdump/Makefile config.status: creating ncgen3/Makefile config.status: creating ncgen/Makefile config.status: creating examples/Makefile config.status: creating examples/C/Makefile config.status: creating examples/CDL/Makefile config.status: creating oc2/Makefile config.status: creating libdap2/Makefile config.status: creating libdap4/Makefile config.status: creating libdispatch/Makefile config.status: creating liblib/Makefile config.status: creating ncdump/cdl/Makefile config.status: creating ncdump/expected/Makefile config.status: creating docs/Makefile config.status: creating docs/images/Makefile config.status: creating nctest/Makefile config.status: creating nc_test4/Makefile config.status: creating nc_test/Makefile config.status: creating ncdap_test/Makefile config.status: creating ncdap_test/testdata3/Makefile config.status: creating ncdap_test/expected3/Makefile config.status: creating ncdap_test/expectremote3/Makefile config.status: creating dap4_test/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands # NetCDF C Configuration Summary ============================== # General ------- NetCDF Version: 4.5.0 Configured On: Wed Jun 3 10:31:26 PDT 2020 Host System: x86_64-pc-linux-gnu Build Directory: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0 Install Prefix: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt # Compiling Options ----------------- C Compiler: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc CFLAGS: -fstack-protector -O3 CPPFLAGS: -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include LDFLAGS: AM_CFLAGS: AM_CPPFLAGS: AM_LDFLAGS: Shared Library: yes Static Library: yes Extra libraries: -lpnetcdf -lm -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lpnetcdf -lstdc++ -ldl -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lmpifort -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lgfortran -lm -lgcc_s -lquadmath -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lz -lm -lstdc++ -ldl # Features -------- NetCDF-2 API: yes HDF4 Support: no NetCDF-4 API: yes NC-4 Parallel Support: yes PNetCDF Support: yes DAP2 Support: no DAP4 Support: no Diskless Support: yes MMap Support: no JNA Support: no CDF5 Support: noconfigure: WARNING: Doxygen not found - documentation will not be built configure: WARNING: dot not found - will use simple charts in documentation configure: WARNING: Enable erange-fill to conform with PnetCDF setting configure: WARNING: Enable relax-coord-bound to conform with PnetCDF setting Making clean in include make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/include' rm -rf .libs _libs rm -f *.lo make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/include' Making clean in h5_test make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/h5_test' rm -f tst_h_files tst_h_files2 tst_h_files4 tst_h_atts tst_h_atts3 tst_h_atts4 tst_h_vars tst_h_vars2 tst_h_vars3 tst_h_grps tst_h_compounds tst_h_compounds2 tst_h_wrt_cmp tst_h_rd_cmp tst_h_vl tst_h_opaques tst_h_strings tst_h_strings1 tst_h_strings2 tst_h_ints tst_h_dimscales tst_h_dimscales1 tst_h_dimscales2 tst_h_dimscales3 tst_h_enums tst_h_dimscales4 test -z "tst_h_*.h5" || rm -f tst_h_*.h5 rm -rf .libs _libs rm -f *.o test -z "tst_h_files.log tst_h_files2.log tst_h_files4.log tst_h_atts.log tst_h_atts3.log tst_h_atts4.log tst_h_vars.log tst_h_vars2.log tst_h_vars3.log tst_h_grps.log tst_h_compounds.log tst_h_compounds2.log tst_h_wrt_cmp.log tst_h_rd_cmp.log tst_h_vl.log tst_h_opaques.log tst_h_strings.log tst_h_strings1.log tst_h_strings2.log tst_h_ints.log tst_h_dimscales.log tst_h_dimscales1.log tst_h_dimscales2.log tst_h_dimscales3.log tst_h_enums.log tst_h_dimscales4.log" || rm -f tst_h_files.log tst_h_files2.log tst_h_files4.log tst_h_atts.log tst_h_atts3.log tst_h_atts4.log tst_h_vars.log tst_h_vars2.log tst_h_vars3.log tst_h_grps.log tst_h_compounds.log tst_h_compounds2.log tst_h_wrt_cmp.log tst_h_rd_cmp.log tst_h_vl.log tst_h_opaques.log tst_h_strings.log tst_h_strings1.log tst_h_strings2.log tst_h_ints.log tst_h_dimscales.log tst_h_dimscales1.log tst_h_dimscales2.log tst_h_dimscales3.log tst_h_enums.log tst_h_dimscales4.log test -z "tst_h_files.trs tst_h_files2.trs tst_h_files4.trs tst_h_atts.trs tst_h_atts3.trs tst_h_atts4.trs tst_h_vars.trs tst_h_vars2.trs tst_h_vars3.trs tst_h_grps.trs tst_h_compounds.trs tst_h_compounds2.trs tst_h_wrt_cmp.trs tst_h_rd_cmp.trs tst_h_vl.trs tst_h_opaques.trs tst_h_strings.trs tst_h_strings1.trs tst_h_strings2.trs tst_h_ints.trs tst_h_dimscales.trs tst_h_dimscales1.trs tst_h_dimscales2.trs tst_h_dimscales3.trs tst_h_enums.trs tst_h_dimscales4.trs" || rm -f tst_h_files.trs tst_h_files2.trs tst_h_files4.trs tst_h_atts.trs tst_h_atts3.trs tst_h_atts4.trs tst_h_vars.trs tst_h_vars2.trs tst_h_vars3.trs tst_h_grps.trs tst_h_compounds.trs tst_h_compounds2.trs tst_h_wrt_cmp.trs tst_h_rd_cmp.trs tst_h_vl.trs tst_h_opaques.trs tst_h_strings.trs tst_h_strings1.trs tst_h_strings2.trs tst_h_ints.trs tst_h_dimscales.trs tst_h_dimscales1.trs tst_h_dimscales2.trs tst_h_dimscales3.trs tst_h_enums.trs tst_h_dimscales4.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/h5_test' Making clean in libdispatch make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libdispatch' rm -f test_ncuri test_pathcvt rm -rf .libs _libs test -z "libdispatch.la libnetcdf2.la " || rm -f libdispatch.la libnetcdf2.la rm -f ./so_locations rm -f *.o test -z "test_ncuri.log test_pathcvt.log" || rm -f test_ncuri.log test_pathcvt.log test -z "test_ncuri.trs test_pathcvt.trs" || rm -f test_ncuri.trs test_pathcvt.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libdispatch' Making clean in libsrc make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libsrc' rm -rf .libs _libs test -z "libnetcdf3.la" || rm -f libnetcdf3.la rm -f ./so_locations rm -f *.o rm -f *.lo make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libsrc' Making clean in libsrc4 make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libsrc4' rm -rf .libs _libs test -z "libnetcdf4.la" || rm -f libnetcdf4.la rm -f ./so_locations rm -f *.o rm -f *.lo make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libsrc4' Making clean in libsrcp make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libsrcp' rm -rf .libs _libs test -z "libnetcdfp.la" || rm -f libnetcdfp.la rm -f ./so_locations rm -f *.o rm -f *.lo make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libsrcp' Making clean in liblib make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/liblib' test -z "" || rm -f test -z "libnetcdf.la" || rm -f libnetcdf.la rm -f ./so_locations rm -rf .libs _libs rm -f *.o rm -f *.lo make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/liblib' Making clean in ncgen3 make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncgen3' rm -f ncgen3 test -z "c0.nc c0_64.nc c0_4.nc c0_4c.nc" || rm -f c0.nc c0_64.nc c0_4.nc c0_4c.nc rm -rf .libs _libs rm -f *.o test -z "run_tests.sh.log run_nc4_tests.sh.log" || rm -f run_tests.sh.log run_nc4_tests.sh.log test -z "run_tests.sh.trs run_nc4_tests.sh.trs" || rm -f run_tests.sh.trs run_nc4_tests.sh.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncgen3' Making clean in ncgen make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncgen' rm -f ncgen test -z "c0.nc c0_64.nc c0_4.nc c0_4c.nc ref_camrun.c ncf199.nc c5.nc compound_datasize_test.nc compound_datasize_test2.nc tst_compound_datasize_test.cdl tst_compound_datasize_test2.cdl tst_ncf199.cdl tst_tst_gattenum.cdl tst_gattenum.nc tst_tst_usuffix.cdl tst_usuffix.nc tst_c0.cdl tst_c0_4.cdl tst_c0_4c.cdl tst_c0_64.cdl" || rm -f c0.nc c0_64.nc c0_4.nc c0_4c.nc ref_camrun.c ncf199.nc c5.nc compound_datasize_test.nc compound_datasize_test2.nc tst_compound_datasize_test.cdl tst_compound_datasize_test2.cdl tst_ncf199.cdl tst_tst_gattenum.cdl tst_gattenum.nc tst_tst_usuffix.cdl tst_usuffix.nc tst_c0.cdl tst_c0_4.cdl tst_c0_4c.cdl tst_c0_64.cdl rm -rf .libs _libs rm -f *.o rm -f *.lo make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncgen' Making clean in ncdump make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump' Making clean in cdl make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump/cdl' rm -rf .libs _libs rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump/cdl' Making clean in expected make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump/expected' rm -rf .libs _libs rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump/expected' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump' rm -f ncdump nccopy rm -f rewrite-scalar ctest ctest64 ncdump tst_utf8 bom tst_dimsizes nctrunc tst_fileinfo tst_create_files tst_h_rdc0 tst_group_data tst_enum_data tst_opaque_data tst_string_data tst_vlen_data tst_comp tst_comp2 tst_nans tst_special_atts tst_unicode tst_fillbug tst_compress tst_chunking tst_h_scalar tst_bug324 test -z "test0.nc test1_ncdump.cdl test1_ncdump.nc test2_ncdump.cdl test1.cdl test0_ncdump.nc ctest1.cdl test1_cdf5.nc test1_cdf5.cdl test0_cdf5.nc test2_cdf5.nc test2_cdf5.cdl test0_offset.nc test1_offset.nc test1_offset.cdl test2_offset.nc test2_offset.cdl ctest0.nc ctest0_64.nc c1.cdl c1_4.cdl ctest1_64.cdl c0.nc c0_4.nc small.nc small2.nc c0tmp.nc c1.ncml utf8.cdl utf8_64.cdl utf8.nc utf8_64.nc tmp.cdl tst_vlen_data.nc tst_utf8.nc tst_special_atts.nc tst_unicode.nc tst_solar_2.nc tst_string_data.nc tst_calendars.nc tst_nans.nc tst_opaque_data.nc tst_solar_cmp.nc tst_enum_data.nc tst_solar_1.nc tst_mslp_64.nc tst_mslp.nc tst_bug321.nc tst_comp2.nc tst_ncml.nc tst_fillbug.nc tst_group_data.nc tst_small.nc tst_comp.nc tst_unicode.cdl tst_group_data.cdl tst_compounds2.cdl tst_comp.cdl tst_enum_data.cdl tst_small.cdl tst_times.cdl tst_solar_2.cdl tst_string_data.cdl tst_fillbug.cdl tst_opaque_data.cdl tst_compounds4.cdl tst_utf8.cdl tst_compounds3.cdl tst_special_atts.cdl tst_nans.cdl tst_format_att_64.cdl tst_vlen_data.cdl tst_solar_1.cdl tst_format_att.cdl tst_inflated.nc tmp_subset.cdl tst_inflated4.nc tst_deflated.nc tst_chunking.nc tmp*.nc tst_charfill.nc tmp_tst_charfill.cdl iter.* tst_nc_test_netcdf4_4_0.cdl tst_mud4.nc tst_mud4.cdl tst_mud4-bc.cdl tst_ncf213.cdl tst_ncf213.nc tst_h_scalar.cdl tst_h_scalar.nc tst_mud4_chars.cdl tst_mud4_chars.nc inttags.nc inttags4.nc tst_inttags.cdl tst_inttags4.cdl tst_dimsize_classic.nc tst_dimsize_64offset.nc tst_dimsize_64data.nc nc4_fileinfo.nc hdf5_fileinfo.hdf ref_hdf5_compat1.nc ref_hdf5_compat2.nc ref_hdf5_compat3.nc ref_tst_compounds.nc ref_tst_dims.nc ref_tst_interops4.nc ref_tst_xplatform2_1.nc ref_tst_xplatform2_2.nc nccopy3_subset_out.nc results/*.nc results/*.dmp results/*.dmp2 tmp*.cdl c5.nc compound_datasize_test.nc compound_datasize_test2.nc ncf199.nc ref_camrun.c tst_c0.cdl tst_c0_4.cdl tst_c0_4c.cdl tst_c0_64.cdl tst_compound_datasize_test.cdl tst_compound_datasize_test2.cdl tst_gattenum.nc tst_ncf199.cdl tst_tst_gattenum.cdl tst_tst_usuffix.cdl tst_usuffix.nc tst_bug324.nc nccopy3_subset_out.nc" || rm -f test0.nc test1_ncdump.cdl test1_ncdump.nc test2_ncdump.cdl test1.cdl test0_ncdump.nc ctest1.cdl test1_cdf5.nc test1_cdf5.cdl test0_cdf5.nc test2_cdf5.nc test2_cdf5.cdl test0_offset.nc test1_offset.nc test1_offset.cdl test2_offset.nc test2_offset.cdl ctest0.nc ctest0_64.nc c1.cdl c1_4.cdl ctest1_64.cdl c0.nc c0_4.nc small.nc small2.nc c0tmp.nc c1.ncml utf8.cdl utf8_64.cdl utf8.nc utf8_64.nc tmp.cdl tst_vlen_data.nc tst_utf8.nc tst_special_atts.nc tst_unicode.nc tst_solar_2.nc tst_string_data.nc tst_calendars.nc tst_nans.nc tst_opaque_data.nc tst_solar_cmp.nc tst_enum_data.nc tst_solar_1.nc tst_mslp_64.nc tst_mslp.nc tst_bug321.nc tst_comp2.nc tst_ncml.nc tst_fillbug.nc tst_group_data.nc tst_small.nc tst_comp.nc tst_unicode.cdl tst_group_data.cdl tst_compounds2.cdl tst_comp.cdl tst_enum_data.cdl tst_small.cdl tst_times.cdl tst_solar_2.cdl tst_string_data.cdl tst_fillbug.cdl tst_opaque_data.cdl tst_compounds4.cdl tst_utf8.cdl tst_compounds3.cdl tst_special_atts.cdl tst_nans.cdl tst_format_att_64.cdl tst_vlen_data.cdl tst_solar_1.cdl tst_format_att.cdl tst_inflated.nc tmp_subset.cdl tst_inflated4.nc tst_deflated.nc tst_chunking.nc tmp*.nc tst_charfill.nc tmp_tst_charfill.cdl iter.* tst_nc_test_netcdf4_4_0.cdl tst_mud4.nc tst_mud4.cdl tst_mud4-bc.cdl tst_ncf213.cdl tst_ncf213.nc tst_h_scalar.cdl tst_h_scalar.nc tst_mud4_chars.cdl tst_mud4_chars.nc inttags.nc inttags4.nc tst_inttags.cdl tst_inttags4.cdl tst_dimsize_classic.nc tst_dimsize_64offset.nc tst_dimsize_64data.nc nc4_fileinfo.nc hdf5_fileinfo.hdf ref_hdf5_compat1.nc ref_hdf5_compat2.nc ref_hdf5_compat3.nc ref_tst_compounds.nc ref_tst_dims.nc ref_tst_interops4.nc ref_tst_xplatform2_1.nc ref_tst_xplatform2_2.nc nccopy3_subset_out.nc results/*.nc results/*.dmp results/*.dmp2 tmp*.cdl c5.nc compound_datasize_test.nc compound_datasize_test2.nc ncf199.nc ref_camrun.c tst_c0.cdl tst_c0_4.cdl tst_c0_4c.cdl tst_c0_64.cdl tst_compound_datasize_test.cdl tst_compound_datasize_test2.cdl tst_gattenum.nc tst_ncf199.cdl tst_tst_gattenum.cdl tst_tst_usuffix.cdl tst_usuffix.nc tst_bug324.nc nccopy3_subset_out.nc rm -rf .libs _libs rm -rf results rm -f nc4print rm -f *.o test -z "tst_inttags.sh.log run_tests.sh.log tst_64bit.sh.log ctest.log ctest64.log tst_output.sh.log tst_lengths.sh.log tst_calendars.sh.log tst_utf8.log run_utf8_tests.sh.log tst_nccopy3.sh.log tst_nccopy3_subset.sh.log tst_charfill.sh.log tst_iter.sh.log tst_formatx3.sh.log tst_bom.sh.log tst_dimsizes.sh.log run_ncgen_tests.sh.log tst_fileinfo.sh.log run_ncgen_nc4_tests.sh.log tst_inmemory_nc3.sh.log tst_inmemory_nc4.sh.log tst_inttags4.sh.log tst_create_files.log tst_group_data.log tst_enum_data.log tst_opaque_data.log tst_string_data.log tst_vlen_data.log tst_comp.log tst_comp2.log tst_nans.log tst_special_atts.log tst_netcdf4.sh.log tst_h_rdc0.log tst_unicode.log tst_fillbug.log tst_fillbug.sh.log tst_netcdf4_4.sh.log tst_compress.log tst_nccopy4.sh.log tst_grp_spec.sh.log tst_mud.sh.log tst_h_scalar.log tst_h_scalar.sh.log tst_formatx4.sh.log tst_bug324.log run_utf8_nc4_tests.sh.log run_back_comp_tests.sh.log tst_ncgen4_classic.sh.log tst_ncgen4.sh.log" || rm -f tst_inttags.sh.log run_tests.sh.log tst_64bit.sh.log ctest.log ctest64.log tst_output.sh.log tst_lengths.sh.log tst_calendars.sh.log tst_utf8.log run_utf8_tests.sh.log tst_nccopy3.sh.log tst_nccopy3_subset.sh.log tst_charfill.sh.log tst_iter.sh.log tst_formatx3.sh.log tst_bom.sh.log tst_dimsizes.sh.log run_ncgen_tests.sh.log tst_fileinfo.sh.log run_ncgen_nc4_tests.sh.log tst_inmemory_nc3.sh.log tst_inmemory_nc4.sh.log tst_inttags4.sh.log tst_create_files.log tst_group_data.log tst_enum_data.log tst_opaque_data.log tst_string_data.log tst_vlen_data.log tst_comp.log tst_comp2.log tst_nans.log tst_special_atts.log tst_netcdf4.sh.log tst_h_rdc0.log tst_unicode.log tst_fillbug.log tst_fillbug.sh.log tst_netcdf4_4.sh.log tst_compress.log tst_nccopy4.sh.log tst_grp_spec.sh.log tst_mud.sh.log tst_h_scalar.log tst_h_scalar.sh.log tst_formatx4.sh.log tst_bug324.log run_utf8_nc4_tests.sh.log run_back_comp_tests.sh.log tst_ncgen4_classic.sh.log tst_ncgen4.sh.log test -z "tst_inttags.sh.trs run_tests.sh.trs tst_64bit.sh.trs ctest.trs ctest64.trs tst_output.sh.trs tst_lengths.sh.trs tst_calendars.sh.trs tst_utf8.trs run_utf8_tests.sh.trs tst_nccopy3.sh.trs tst_nccopy3_subset.sh.trs tst_charfill.sh.trs tst_iter.sh.trs tst_formatx3.sh.trs tst_bom.sh.trs tst_dimsizes.sh.trs run_ncgen_tests.sh.trs tst_fileinfo.sh.trs run_ncgen_nc4_tests.sh.trs tst_inmemory_nc3.sh.trs tst_inmemory_nc4.sh.trs tst_inttags4.sh.trs tst_create_files.trs tst_group_data.trs tst_enum_data.trs tst_opaque_data.trs tst_string_data.trs tst_vlen_data.trs tst_comp.trs tst_comp2.trs tst_nans.trs tst_special_atts.trs tst_netcdf4.sh.trs tst_h_rdc0.trs tst_unicode.trs tst_fillbug.trs tst_fillbug.sh.trs tst_netcdf4_4.sh.trs tst_compress.trs tst_nccopy4.sh.trs tst_grp_spec.sh.trs tst_mud.sh.trs tst_h_scalar.trs tst_h_scalar.sh.trs tst_formatx4.sh.trs tst_bug324.trs run_utf8_nc4_tests.sh.trs run_back_comp_tests.sh.trs tst_ncgen4_classic.sh.trs tst_ncgen4.sh.trs" || rm -f tst_inttags.sh.trs run_tests.sh.trs tst_64bit.sh.trs ctest.trs ctest64.trs tst_output.sh.trs tst_lengths.sh.trs tst_calendars.sh.trs tst_utf8.trs run_utf8_tests.sh.trs tst_nccopy3.sh.trs tst_nccopy3_subset.sh.trs tst_charfill.sh.trs tst_iter.sh.trs tst_formatx3.sh.trs tst_bom.sh.trs tst_dimsizes.sh.trs run_ncgen_tests.sh.trs tst_fileinfo.sh.trs run_ncgen_nc4_tests.sh.trs tst_inmemory_nc3.sh.trs tst_inmemory_nc4.sh.trs tst_inttags4.sh.trs tst_create_files.trs tst_group_data.trs tst_enum_data.trs tst_opaque_data.trs tst_string_data.trs tst_vlen_data.trs tst_comp.trs tst_comp2.trs tst_nans.trs tst_special_atts.trs tst_netcdf4.sh.trs tst_h_rdc0.trs tst_unicode.trs tst_fillbug.trs tst_fillbug.sh.trs tst_netcdf4_4.sh.trs tst_compress.trs tst_nccopy4.sh.trs tst_grp_spec.sh.trs tst_mud.sh.trs tst_h_scalar.trs tst_h_scalar.sh.trs tst_formatx4.sh.trs tst_bug324.trs run_utf8_nc4_tests.sh.trs run_back_comp_tests.sh.trs tst_ncgen4_classic.sh.trs tst_ncgen4.sh.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump' Making clean in nctest make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/nctest' rm -f nctest tst_rename test -z "nctest_classic.nc nctest_64bit_offset.nc nctest_netcdf4.nc test2.nc temp.tmp tst_*.nc nctest_classic.cdl ref_nctest_classic.cdl" || rm -f nctest_classic.nc nctest_64bit_offset.nc nctest_netcdf4.nc test2.nc temp.tmp tst_*.nc nctest_classic.cdl ref_nctest_classic.cdl rm -rf .libs _libs rm -f *.o test -z "nctest.log tst_rename.log compare_test_files.sh.log" || rm -f nctest.log tst_rename.log compare_test_files.sh.log test -z "nctest.trs tst_rename.trs compare_test_files.sh.trs" || rm -f nctest.trs tst_rename.trs compare_test_files.sh.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/nctest' Making clean in nc_test make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/nc_test' rm -f t_nc tst_small nc_test tst_misc tst_norm tst_names tst_nofill tst_nofill2 tst_nofill3 tst_atts3 tst_meta tst_inq_type tst_utf8_validate tst_utf8_phrases tst_global_fillval tst_atts tst_put_vars tst_elatefill tst_parallel2 tst_pnetcdf tst_addvar tst_formatx_pnetcdf tst_diskless tst_diskless3 tst_diskless4 tst_diskless5 tst_diskless2 test -z "nc_test_classic.nc nc_test_64bit.nc nc_test_netcdf4.nc tst_*.nc t_nc.nc large_files.nc quick_large_files.nc tst_diskless.nc tst_diskless2.nc tst_diskless3.nc tst_diskless3_file.cdl tst_diskless3_memory.cdl tst_diskless4.cdl tst_diskless4.nc tst_formatx.nc nc_test_cdf5.nc unlim.nc tst_inq_type.nc tst_elatefill.nc tst_global_fillval.nc tst_large_cdf5.nc ncx.c" || rm -f nc_test_classic.nc nc_test_64bit.nc nc_test_netcdf4.nc tst_*.nc t_nc.nc large_files.nc quick_large_files.nc tst_diskless.nc tst_diskless2.nc tst_diskless3.nc tst_diskless3_file.cdl tst_diskless3_memory.cdl tst_diskless4.cdl tst_diskless4.nc tst_formatx.nc nc_test_cdf5.nc unlim.nc tst_inq_type.nc tst_elatefill.nc tst_global_fillval.nc tst_large_cdf5.nc ncx.c rm -rf .libs _libs rm -f *.o test -z "t_nc.log tst_small.log nc_test.log tst_misc.log tst_norm.log tst_names.log tst_nofill.log tst_nofill2.log tst_nofill3.log tst_atts3.log tst_meta.log tst_inq_type.log tst_utf8_validate.log tst_utf8_phrases.log tst_global_fillval.log tst_atts.log tst_put_vars.log tst_elatefill.log tst_parallel2.log tst_pnetcdf.log tst_addvar.log tst_formatx_pnetcdf.log run_diskless.sh.log run_diskless5.sh.log run_pnetcdf_test.sh.log" || rm -f t_nc.log tst_small.log nc_test.log tst_misc.log tst_norm.log tst_names.log tst_nofill.log tst_nofill2.log tst_nofill3.log tst_atts3.log tst_meta.log tst_inq_type.log tst_utf8_validate.log tst_utf8_phrases.log tst_global_fillval.log tst_atts.log tst_put_vars.log tst_elatefill.log tst_parallel2.log tst_pnetcdf.log tst_addvar.log tst_formatx_pnetcdf.log run_diskless.sh.log run_diskless5.sh.log run_pnetcdf_test.sh.log test -z "t_nc.trs tst_small.trs nc_test.trs tst_misc.trs tst_norm.trs tst_names.trs tst_nofill.trs tst_nofill2.trs tst_nofill3.trs tst_atts3.trs tst_meta.trs tst_inq_type.trs tst_utf8_validate.trs tst_utf8_phrases.trs tst_global_fillval.trs tst_atts.trs tst_put_vars.trs tst_elatefill.trs tst_parallel2.trs tst_pnetcdf.trs tst_addvar.trs tst_formatx_pnetcdf.trs run_diskless.sh.trs run_diskless5.sh.trs run_pnetcdf_test.sh.trs" || rm -f t_nc.trs tst_small.trs nc_test.trs tst_misc.trs tst_norm.trs tst_names.trs tst_nofill.trs tst_nofill2.trs tst_nofill3.trs tst_atts3.trs tst_meta.trs tst_inq_type.trs tst_utf8_validate.trs tst_utf8_phrases.trs tst_global_fillval.trs tst_atts.trs tst_put_vars.trs tst_elatefill.trs tst_parallel2.trs tst_pnetcdf.trs tst_addvar.trs tst_formatx_pnetcdf.trs run_diskless.sh.trs run_diskless5.sh.trs run_pnetcdf_test.sh.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/nc_test' Making clean in nc_test4 make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/nc_test4' rm -f tst_dims tst_dims2 tst_dims3 tst_files tst_files4 tst_vars tst_varms tst_unlim_vars tst_converts tst_converts2 tst_grps tst_grps2 tst_compounds tst_compounds2 tst_compounds3 tst_opaques tst_strings tst_strings2 tst_interops tst_interops4 tst_interops5 tst_interops6 tst_enums tst_coords tst_coords2 tst_coords3 tst_vars3 tst_vars4 tst_chunks tst_chunks2 tst_utf8 tst_fills tst_fills2 tst_fillbug tst_xplatform tst_xplatform2 tst_h_atts2 tst_endian_fill tst_atts t_type cdm_sea_soundings tst_camrun tst_vl tst_atts1 tst_atts2 tst_vars2 tst_files5 tst_files6 tst_sync tst_h_scalar tst_rename tst_h5_endians tst_atts_string_rewrite tst_hdf5_file_compat tst_fill_attr_vanish tst_rehash tst_h_strbug tst_h_refs renamegroup tst_empty_vlen_unlim tst_v2 test -z "tst_mpi_parallel.bin cdm_sea_soundings.nc bm_chunking.nc bm_radar.nc bm_radar1.nc radar_3d_compression_test.txt radar_3d_compression.txt radar_2d_compression.txt radar_3d_chunking.txt tst_floats_1D.cdl floats_1D_3.nc floats_1D.cdl tst_*.nc tst_floats2_*.cdl tst_ints2_*.cdl tst_shorts2_*.cdl tst_elena_*.cdl tst_simple*.cdl tst_chunks.cdl pr_A1.* tauu_A1.* usi_01.* thetau_01.* tst_*.nc tst_*.h5 tst_grp_rename.cdl tst_grp_rename.nc tst_grp_rename.dmp ref_grp_rename.cdl foo1.nc tst_interops2.h4 tst_h5_endians.nc tst_h4_lendian.h4 test.nc tst_atts_string_rewrite.nc tst_empty_vlen_unlim.nc tst_empty_vlen_lim.nc tst_parallel4_simplerw_coll.nc tst_fill_attr_vanish.nc tst_rehash.nc" || rm -f tst_mpi_parallel.bin cdm_sea_soundings.nc bm_chunking.nc bm_radar.nc bm_radar1.nc radar_3d_compression_test.txt radar_3d_compression.txt radar_2d_compression.txt radar_3d_chunking.txt tst_floats_1D.cdl floats_1D_3.nc floats_1D.cdl tst_*.nc tst_floats2_*.cdl tst_ints2_*.cdl tst_shorts2_*.cdl tst_elena_*.cdl tst_simple*.cdl tst_chunks.cdl pr_A1.* tauu_A1.* usi_01.* thetau_01.* tst_*.nc tst_*.h5 tst_grp_rename.cdl tst_grp_rename.nc tst_grp_rename.dmp ref_grp_rename.cdl foo1.nc tst_interops2.h4 tst_h5_endians.nc tst_h4_lendian.h4 test.nc tst_atts_string_rewrite.nc tst_empty_vlen_unlim.nc tst_empty_vlen_lim.nc tst_parallel4_simplerw_coll.nc tst_fill_attr_vanish.nc tst_rehash.nc rm -rf .libs _libs rm -f *.o test -z "tst_dims.log tst_dims2.log tst_dims3.log tst_files.log tst_files4.log tst_vars.log tst_varms.log tst_unlim_vars.log tst_converts.log tst_converts2.log tst_grps.log tst_grps2.log tst_compounds.log tst_compounds2.log tst_compounds3.log tst_opaques.log tst_strings.log tst_strings2.log tst_interops.log tst_interops4.log tst_interops5.log tst_interops6.log tst_enums.log tst_coords.log tst_coords2.log tst_coords3.log tst_vars3.log tst_vars4.log tst_chunks.log tst_chunks2.log tst_utf8.log tst_fills.log tst_fills2.log tst_fillbug.log tst_xplatform.log tst_xplatform2.log tst_h_atts2.log tst_endian_fill.log tst_atts.log t_type.log cdm_sea_soundings.log tst_camrun.log tst_vl.log tst_atts1.log tst_atts2.log tst_vars2.log tst_files5.log tst_files6.log tst_sync.log tst_h_scalar.log tst_rename.log tst_h5_endians.log tst_atts_string_rewrite.log tst_hdf5_file_compat.log tst_fill_attr_vanish.log tst_rehash.log tst_h_strbug.log tst_h_refs.log run_empty_vlen_test.sh.log tst_v2.log" || rm -f tst_dims.log tst_dims2.log tst_dims3.log tst_files.log tst_files4.log tst_vars.log tst_varms.log tst_unlim_vars.log tst_converts.log tst_converts2.log tst_grps.log tst_grps2.log tst_compounds.log tst_compounds2.log tst_compounds3.log tst_opaques.log tst_strings.log tst_strings2.log tst_interops.log tst_interops4.log tst_interops5.log tst_interops6.log tst_enums.log tst_coords.log tst_coords2.log tst_coords3.log tst_vars3.log tst_vars4.log tst_chunks.log tst_chunks2.log tst_utf8.log tst_fills.log tst_fills2.log tst_fillbug.log tst_xplatform.log tst_xplatform2.log tst_h_atts2.log tst_endian_fill.log tst_atts.log t_type.log cdm_sea_soundings.log tst_camrun.log tst_vl.log tst_atts1.log tst_atts2.log tst_vars2.log tst_files5.log tst_files6.log tst_sync.log tst_h_scalar.log tst_rename.log tst_h5_endians.log tst_atts_string_rewrite.log tst_hdf5_file_compat.log tst_fill_attr_vanish.log tst_rehash.log tst_h_strbug.log tst_h_refs.log run_empty_vlen_test.sh.log tst_v2.log test -z "tst_dims.trs tst_dims2.trs tst_dims3.trs tst_files.trs tst_files4.trs tst_vars.trs tst_varms.trs tst_unlim_vars.trs tst_converts.trs tst_converts2.trs tst_grps.trs tst_grps2.trs tst_compounds.trs tst_compounds2.trs tst_compounds3.trs tst_opaques.trs tst_strings.trs tst_strings2.trs tst_interops.trs tst_interops4.trs tst_interops5.trs tst_interops6.trs tst_enums.trs tst_coords.trs tst_coords2.trs tst_coords3.trs tst_vars3.trs tst_vars4.trs tst_chunks.trs tst_chunks2.trs tst_utf8.trs tst_fills.trs tst_fills2.trs tst_fillbug.trs tst_xplatform.trs tst_xplatform2.trs tst_h_atts2.trs tst_endian_fill.trs tst_atts.trs t_type.trs cdm_sea_soundings.trs tst_camrun.trs tst_vl.trs tst_atts1.trs tst_atts2.trs tst_vars2.trs tst_files5.trs tst_files6.trs tst_sync.trs tst_h_scalar.trs tst_rename.trs tst_h5_endians.trs tst_atts_string_rewrite.trs tst_hdf5_file_compat.trs tst_fill_attr_vanish.trs tst_rehash.trs tst_h_strbug.trs tst_h_refs.trs run_empty_vlen_test.sh.trs tst_v2.trs" || rm -f tst_dims.trs tst_dims2.trs tst_dims3.trs tst_files.trs tst_files4.trs tst_vars.trs tst_varms.trs tst_unlim_vars.trs tst_converts.trs tst_converts2.trs tst_grps.trs tst_grps2.trs tst_compounds.trs tst_compounds2.trs tst_compounds3.trs tst_opaques.trs tst_strings.trs tst_strings2.trs tst_interops.trs tst_interops4.trs tst_interops5.trs tst_interops6.trs tst_enums.trs tst_coords.trs tst_coords2.trs tst_coords3.trs tst_vars3.trs tst_vars4.trs tst_chunks.trs tst_chunks2.trs tst_utf8.trs tst_fills.trs tst_fills2.trs tst_fillbug.trs tst_xplatform.trs tst_xplatform2.trs tst_h_atts2.trs tst_endian_fill.trs tst_atts.trs t_type.trs cdm_sea_soundings.trs tst_camrun.trs tst_vl.trs tst_atts1.trs tst_atts2.trs tst_vars2.trs tst_files5.trs tst_files6.trs tst_sync.trs tst_h_scalar.trs tst_rename.trs tst_h5_endians.trs tst_atts_string_rewrite.trs tst_hdf5_file_compat.trs tst_fill_attr_vanish.trs tst_rehash.trs tst_h_strbug.trs tst_h_refs.trs run_empty_vlen_test.sh.trs tst_v2.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/nc_test4' Making clean in docs make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/docs' Making clean in images make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/docs/images' rm -rf .libs _libs rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/docs/images' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/docs' test -z "doxyfile.stamp html latex man" || rm -f doxyfile.stamp html latex man rm -rf .libs _libs rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/docs' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/docs' Making clean in examples make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/examples' Making clean in C make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/examples/C' rm -f simple_xy_wr simple_xy_rd sfc_pres_temp_wr sfc_pres_temp_rd pres_temp_4D_wr pres_temp_4D_rd simple_nc4_wr simple_nc4_rd simple_xy_nc4_wr simple_xy_nc4_rd parallel_vara test -z "sfc_pres_temp.nc simple_xy.nc pres_temp_4D.nc simple_nc4.nc simple_xy_nc4.nc testfile.nc" || rm -f sfc_pres_temp.nc simple_xy.nc pres_temp_4D.nc simple_nc4.nc simple_xy_nc4.nc testfile.nc rm -rf .libs _libs rm -f *.o test -z "simple_xy_wr.log simple_xy_rd.log sfc_pres_temp_wr.log sfc_pres_temp_rd.log pres_temp_4D_wr.log pres_temp_4D_rd.log simple_nc4_wr.log simple_nc4_rd.log simple_xy_nc4_wr.log simple_xy_nc4_rd.log parallel_vara.log" || rm -f simple_xy_wr.log simple_xy_rd.log sfc_pres_temp_wr.log sfc_pres_temp_rd.log pres_temp_4D_wr.log pres_temp_4D_rd.log simple_nc4_wr.log simple_nc4_rd.log simple_xy_nc4_wr.log simple_xy_nc4_rd.log parallel_vara.log test -z "simple_xy_wr.trs simple_xy_rd.trs sfc_pres_temp_wr.trs sfc_pres_temp_rd.trs pres_temp_4D_wr.trs pres_temp_4D_rd.trs simple_nc4_wr.trs simple_nc4_rd.trs simple_xy_nc4_wr.trs simple_xy_nc4_rd.trs parallel_vara.trs" || rm -f simple_xy_wr.trs simple_xy_rd.trs sfc_pres_temp_wr.trs sfc_pres_temp_rd.trs pres_temp_4D_wr.trs pres_temp_4D_rd.trs simple_nc4_wr.trs simple_nc4_rd.trs simple_xy_nc4_wr.trs simple_xy_nc4_rd.trs parallel_vara.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/examples/C' Making clean in CDL make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/examples/CDL' test -z "simple_xy.nc sfc_pres_temp.nc pres_temp_4D.nc" || rm -f simple_xy.nc sfc_pres_temp.nc pres_temp_4D.nc rm -rf .libs _libs test -z "create_sample_files.sh.log do_comps.sh.log" || rm -f create_sample_files.sh.log do_comps.sh.log test -z "create_sample_files.sh.trs do_comps.sh.trs" || rm -f create_sample_files.sh.trs do_comps.sh.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/examples/CDL' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/examples' rm -rf .libs _libs rm -f *.lo make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/examples' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/examples' make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0' rm -rf .libs _libs rm -f *.lo make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0'/usr/bin/make all-recursive make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0' Making all in include make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/include' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/include' Making all in h5_test make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/h5_test' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/h5_test' Making all in libdispatch make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libdispatch' /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dparallel.lo -MD -MP -MF .deps/libdispatch_la-dparallel.Tpo -c -o libdispatch_la-dparallel.lo `test -f 'dparallel.c' || echo './'`dparallel.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dcopy.lo -MD -MP -MF .deps/libdispatch_la-dcopy.Tpo -c -o libdispatch_la-dcopy.lo `test -f 'dcopy.c' || echo './'`dcopy.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dfile.lo -MD -MP -MF .deps/libdispatch_la-dfile.Tpo -c -o libdispatch_la-dfile.lo `test -f 'dfile.c' || echo './'`dfile.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-ddim.lo -MD -MP -MF .deps/libdispatch_la-ddim.Tpo -c -o libdispatch_la-ddim.lo `test -f 'ddim.c' || echo './'`ddim.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-datt.lo -MD -MP -MF .deps/libdispatch_la-datt.Tpo -c -o libdispatch_la-datt.lo `test -f 'datt.c' || echo './'`datt.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dattinq.lo -MD -MP -MF .deps/libdispatch_la-dattinq.Tpo -c -o libdispatch_la-dattinq.lo `test -f 'dattinq.c' || echo './'`dattinq.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dattput.lo -MD -MP -MF .deps/libdispatch_la-dattput.Tpo -c -o libdispatch_la-dattput.lo `test -f 'dattput.c' || echo './'`dattput.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dattget.lo -MD -MP -MF .deps/libdispatch_la-dattget.Tpo -c -o libdispatch_la-dattget.lo `test -f 'dattget.c' || echo './'`dattget.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-derror.lo -MD -MP -MF .deps/libdispatch_la-derror.Tpo -c -o libdispatch_la-derror.lo `test -f 'derror.c' || echo './'`derror.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dvar.lo -MD -MP -MF .deps/libdispatch_la-dvar.Tpo -c -o libdispatch_la-dvar.lo `test -f 'dvar.c' || echo './'`dvar.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dvarget.lo -MD -MP -MF .deps/libdispatch_la-dvarget.Tpo -c -o libdispatch_la-dvarget.lo `test -f 'dvarget.c' || echo './'`dvarget.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dvarput.lo -MD -MP -MF .deps/libdispatch_la-dvarput.Tpo -c -o libdispatch_la-dvarput.lo `test -f 'dvarput.c' || echo './'`dvarput.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dvarinq.lo -MD -MP -MF .deps/libdispatch_la-dvarinq.Tpo -c -o libdispatch_la-dvarinq.lo `test -f 'dvarinq.c' || echo './'`dvarinq.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dinternal.lo -MD -MP -MF .deps/libdispatch_la-dinternal.Tpo -c -o libdispatch_la-dinternal.lo `test -f 'dinternal.c' || echo './'`dinternal.c /bin/bash ../libtool --tag=CC 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.deps/libdispatch_la-ddim.Tpo -c ddim.c -fPIC -DPIC -o .libs/libdispatch_la-ddim.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dvarget.lo -MD -MP -MF .deps/libdispatch_la-dvarget.Tpo -c dvarget.c -fPIC -DPIC -o .libs/libdispatch_la-dvarget.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dcopy.lo -MD -MP -MF .deps/libdispatch_la-dcopy.Tpo -c dcopy.c -fPIC -DPIC -o .libs/libdispatch_la-dcopy.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dvarput.lo -MD -MP -MF .deps/libdispatch_la-dvarput.Tpo -c dvarput.c -fPIC -DPIC -o .libs/libdispatch_la-dvarput.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dstring.lo -MD -MP -MF .deps/libdispatch_la-dstring.Tpo -c dstring.c -fPIC -DPIC -o .libs/libdispatch_la-dstring.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dvar.lo -MD -MP -MF .deps/libdispatch_la-dvar.Tpo -c dvar.c -fPIC -DPIC -o .libs/libdispatch_la-dvar.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-nc.lo -MD -MP -MF .deps/libdispatch_la-nc.Tpo -c nc.c -fPIC -DPIC -o .libs/libdispatch_la-nc.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dattinq.lo -MD -MP -MF .deps/libdispatch_la-dattinq.Tpo -c dattinq.c -fPIC -DPIC -o .libs/libdispatch_la-dattinq.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-nclog.lo -MD -MP -MF .deps/libdispatch_la-nclog.Tpo -c nclog.c -fPIC -DPIC -o .libs/libdispatch_la-nclog.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dvarinq.lo -MD -MP -MF .deps/libdispatch_la-dvarinq.Tpo -c dvarinq.c -fPIC -DPIC -o .libs/libdispatch_la-dvarinq.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dparallel.lo -MD -MP -MF .deps/libdispatch_la-dparallel.Tpo -c dparallel.c -fPIC -DPIC -o .libs/libdispatch_la-dparallel.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-drc.lo -MD -MP -MF .deps/libdispatch_la-drc.Tpo -c drc.c -fPIC -DPIC -o .libs/libdispatch_la-drc.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-ncaux.lo -MD -MP -MF .deps/libdispatch_la-ncaux.Tpo -c ncaux.c -fPIC -DPIC -o .libs/libdispatch_la-ncaux.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dfile.lo -MD -MP -MF .deps/libdispatch_la-dfile.Tpo -c dfile.c -fPIC -DPIC -o .libs/libdispatch_la-dfile.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-derror.lo -MD -MP -MF .deps/libdispatch_la-derror.Tpo -c derror.c -fPIC -DPIC -o .libs/libdispatch_la-derror.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-datt.lo -MD -MP -MF .deps/libdispatch_la-datt.Tpo -c datt.c -fPIC -DPIC -o .libs/libdispatch_la-datt.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dattput.lo -MD -MP -MF .deps/libdispatch_la-dattput.Tpo -c dattput.c -fPIC -DPIC -o .libs/libdispatch_la-dattput.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dutf8.lo -MD -MP -MF .deps/libdispatch_la-dutf8.Tpo -c dutf8.c -fPIC -DPIC -o .libs/libdispatch_la-dutf8.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dtype.lo -MD -MP -MF .deps/libdispatch_la-dtype.Tpo -c dtype.c -fPIC -DPIC -o .libs/libdispatch_la-dtype.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-ddispatch.lo -MD -MP -MF .deps/libdispatch_la-ddispatch.Tpo -c ddispatch.c -fPIC -DPIC -o .libs/libdispatch_la-ddispatch.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-ncuri.lo -MD -MP -MF .deps/libdispatch_la-ncuri.Tpo -c ncuri.c -fPIC -DPIC -o .libs/libdispatch_la-ncuri.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-nclistmgr.lo -MD -MP -MF .deps/libdispatch_la-nclistmgr.Tpo -c nclistmgr.c -fPIC -DPIC -o .libs/libdispatch_la-nclistmgr.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-utf8proc.lo -MD -MP -MF .deps/libdispatch_la-utf8proc.Tpo -c utf8proc.c -fPIC -DPIC -o .libs/libdispatch_la-utf8proc.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-ncbytes.lo -MD -MP -MF .deps/libdispatch_la-ncbytes.Tpo -c ncbytes.c -fPIC -DPIC -o .libs/libdispatch_la-ncbytes.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-nclist.lo -MD -MP -MF .deps/libdispatch_la-nclist.Tpo -c nclist.c -fPIC -DPIC -o .libs/libdispatch_la-nclist.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dgroup.lo -MD -MP -MF .deps/libdispatch_la-dgroup.Tpo -c dgroup.c -fPIC -DPIC -o .libs/libdispatch_la-dgroup.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-doffsets.lo -MD -MP -MF .deps/libdispatch_la-doffsets.Tpo -c doffsets.c -fPIC -DPIC -o .libs/libdispatch_la-doffsets.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-nctime.lo -MD -MP -MF .deps/libdispatch_la-nctime.Tpo -c nctime.c -fPIC -DPIC -o .libs/libdispatch_la-nctime.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dwinpath.lo -MD -MP -MF .deps/libdispatch_la-dwinpath.Tpo -c dwinpath.c -fPIC -DPIC -o .libs/libdispatch_la-dwinpath.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-denum.lo -MD -MP -MF .deps/libdispatch_la-denum.Tpo -c denum.c -fPIC -DPIC -o .libs/libdispatch_la-denum.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-nchashmap.lo -MD -MP -MF .deps/libdispatch_la-nchashmap.Tpo -c nchashmap.c -fPIC -DPIC -o .libs/libdispatch_la-nchashmap.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dcompound.lo -MD -MP -MF .deps/libdispatch_la-dcompound.Tpo -c dcompound.c -fPIC -DPIC -o .libs/libdispatch_la-dcompound.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dopaque.lo -MD -MP -MF .deps/libdispatch_la-dopaque.Tpo -c dopaque.c -fPIC -DPIC -o .libs/libdispatch_la-dopaque.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dinternal.lo -MD -MP -MF .deps/libdispatch_la-dinternal.Tpo -c dinternal.c -fPIC -DPIC -o .libs/libdispatch_la-dinternal.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dattget.lo -MD -MP -MF .deps/libdispatch_la-dattget.Tpo -c dattget.c -fPIC -DPIC -o .libs/libdispatch_la-dattget.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dvlen.lo -MD -MP -MF .deps/libdispatch_la-dvlen.Tpo -c dvlen.c -fPIC -DPIC -o .libs/libdispatch_la-dvlen.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -DDLL_EXPORT -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf2_la-dv2i.lo -MD -MP -MF .deps/libnetcdf2_la-dv2i.Tpo -c dv2i.c -fPIC -DPIC -o .libs/libnetcdf2_la-dv2i.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-nclog.lo -MD -MP -MF .deps/libdispatch_la-nclog.Tpo -c nclog.c -o libdispatch_la-nclog.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dstring.lo -MD -MP -MF .deps/libdispatch_la-dstring.Tpo -c dstring.c -o libdispatch_la-dstring.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dattinq.lo -MD -MP -MF .deps/libdispatch_la-dattinq.Tpo -c dattinq.c -o libdispatch_la-dattinq.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-datt.lo -MD -MP -MF .deps/libdispatch_la-datt.Tpo -c datt.c -o libdispatch_la-datt.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dparallel.lo -MD -MP -MF .deps/libdispatch_la-dparallel.Tpo -c dparallel.c -o libdispatch_la-dparallel.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-denum.lo -MD -MP -MF .deps/libdispatch_la-denum.Tpo -c denum.c -o libdispatch_la-denum.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dutf8.lo -MD -MP -MF .deps/libdispatch_la-dutf8.Tpo -c dutf8.c -o libdispatch_la-dutf8.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dinternal.lo -MD -MP -MF .deps/libdispatch_la-dinternal.Tpo -c dinternal.c -o libdispatch_la-dinternal.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-ddim.lo -MD -MP -MF .deps/libdispatch_la-ddim.Tpo -c ddim.c -o libdispatch_la-ddim.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-nc.lo -MD -MP -MF .deps/libdispatch_la-nc.Tpo -c nc.c -o libdispatch_la-nc.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-doffsets.lo -MD -MP -MF .deps/libdispatch_la-doffsets.Tpo -c doffsets.c -o libdispatch_la-doffsets.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dopaque.lo -MD -MP -MF .deps/libdispatch_la-dopaque.Tpo -c dopaque.c -o libdispatch_la-dopaque.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dtype.lo -MD -MP -MF .deps/libdispatch_la-dtype.Tpo -c dtype.c -o libdispatch_la-dtype.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-nclistmgr.lo -MD -MP -MF .deps/libdispatch_la-nclistmgr.Tpo -c nclistmgr.c -o libdispatch_la-nclistmgr.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dvlen.lo -MD -MP -MF .deps/libdispatch_la-dvlen.Tpo -c dvlen.c -o libdispatch_la-dvlen.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dwinpath.lo -MD -MP -MF .deps/libdispatch_la-dwinpath.Tpo -c dwinpath.c -o libdispatch_la-dwinpath.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dgroup.lo -MD -MP -MF .deps/libdispatch_la-dgroup.Tpo -c dgroup.c -o libdispatch_la-dgroup.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-derror.lo -MD -MP -MF .deps/libdispatch_la-derror.Tpo -c derror.c -o libdispatch_la-derror.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dattput.lo -MD -MP -MF .deps/libdispatch_la-dattput.Tpo -c dattput.c -o libdispatch_la-dattput.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dvar.lo -MD -MP -MF .deps/libdispatch_la-dvar.Tpo -c dvar.c -o libdispatch_la-dvar.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dvarinq.lo -MD -MP -MF .deps/libdispatch_la-dvarinq.Tpo -c dvarinq.c -o libdispatch_la-dvarinq.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dcompound.lo -MD -MP -MF .deps/libdispatch_la-dcompound.Tpo -c dcompound.c -o libdispatch_la-dcompound.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-ncbytes.lo -MD -MP -MF .deps/libdispatch_la-ncbytes.Tpo -c ncbytes.c -o libdispatch_la-ncbytes.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dattget.lo -MD -MP -MF .deps/libdispatch_la-dattget.Tpo -c dattget.c -o libdispatch_la-dattget.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-ddispatch.lo -MD -MP -MF .deps/libdispatch_la-ddispatch.Tpo -c ddispatch.c -o libdispatch_la-ddispatch.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-nchashmap.lo -MD -MP -MF .deps/libdispatch_la-nchashmap.Tpo -c nchashmap.c -o libdispatch_la-nchashmap.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-nclist.lo -MD -MP -MF .deps/libdispatch_la-nclist.Tpo -c nclist.c -o libdispatch_la-nclist.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-drc.lo -MD -MP -MF .deps/libdispatch_la-drc.Tpo -c drc.c -o libdispatch_la-drc.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-ncaux.lo -MD -MP -MF .deps/libdispatch_la-ncaux.Tpo -c ncaux.c -o libdispatch_la-ncaux.o >/dev/null 2>&1 mv -f .deps/libdispatch_la-datt.Tpo .deps/libdispatch_la-datt.Plo mv -f .deps/libdispatch_la-dstring.Tpo .deps/libdispatch_la-dstring.Plo mv -f .deps/libdispatch_la-dutf8.Tpo .deps/libdispatch_la-dutf8.Plo mv -f .deps/libdispatch_la-dattinq.Tpo .deps/libdispatch_la-dattinq.Plo mv -f .deps/libdispatch_la-denum.Tpo .deps/libdispatch_la-denum.Plo mv -f .deps/libdispatch_la-dinternal.Tpo .deps/libdispatch_la-dinternal.Plo mv -f .deps/libdispatch_la-dparallel.Tpo .deps/libdispatch_la-dparallel.Plo mv -f .deps/libdispatch_la-doffsets.Tpo .deps/libdispatch_la-doffsets.Plo libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dfile.lo -MD -MP -MF .deps/libdispatch_la-dfile.Tpo -c dfile.c -o libdispatch_la-dfile.o >/dev/null 2>&1 mv -f .deps/libdispatch_la-dopaque.Tpo .deps/libdispatch_la-dopaque.Plo mv -f .deps/libdispatch_la-nclog.Tpo .deps/libdispatch_la-nclog.Plo mv -f .deps/libdispatch_la-nclistmgr.Tpo .deps/libdispatch_la-nclistmgr.Plo mv -f .deps/libdispatch_la-ddim.Tpo .deps/libdispatch_la-ddim.Plo mv -f .deps/libdispatch_la-dtype.Tpo .deps/libdispatch_la-dtype.Plo mv -f .deps/libdispatch_la-dwinpath.Tpo .deps/libdispatch_la-dwinpath.Plo libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dcopy.lo -MD -MP -MF .deps/libdispatch_la-dcopy.Tpo -c dcopy.c -o libdispatch_la-dcopy.o >/dev/null 2>&1 mv -f .deps/libdispatch_la-nc.Tpo .deps/libdispatch_la-nc.Plo mv -f .deps/libdispatch_la-dgroup.Tpo .deps/libdispatch_la-dgroup.Plo mv -f .deps/libdispatch_la-dvlen.Tpo .deps/libdispatch_la-dvlen.Plo mv -f .deps/libdispatch_la-derror.Tpo .deps/libdispatch_la-derror.Plo mv -f .deps/libdispatch_la-dcompound.Tpo .deps/libdispatch_la-dcompound.Plo mv -f .deps/libdispatch_la-dvarinq.Tpo .deps/libdispatch_la-dvarinq.Plo mv -f .deps/libdispatch_la-dattput.Tpo .deps/libdispatch_la-dattput.Plo mv -f .deps/libdispatch_la-dattget.Tpo .deps/libdispatch_la-dattget.Plo libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -DDLL_EXPORT -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf2_la-dv2i.lo -MD -MP -MF .deps/libnetcdf2_la-dv2i.Tpo -c dv2i.c -o libnetcdf2_la-dv2i.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-ncuri.lo -MD -MP -MF .deps/libdispatch_la-ncuri.Tpo -c ncuri.c -o libdispatch_la-ncuri.o >/dev/null 2>&1 mv -f .deps/libdispatch_la-ddispatch.Tpo .deps/libdispatch_la-ddispatch.Plo mv -f .deps/libdispatch_la-dvar.Tpo .deps/libdispatch_la-dvar.Plo mv -f .deps/libdispatch_la-nchashmap.Tpo .deps/libdispatch_la-nchashmap.Plo mv -f .deps/libdispatch_la-ncbytes.Tpo .deps/libdispatch_la-ncbytes.Plo mv -f .deps/libdispatch_la-nclist.Tpo .deps/libdispatch_la-nclist.Plo mv -f .deps/libdispatch_la-ncaux.Tpo .deps/libdispatch_la-ncaux.Plo mv -f .deps/libdispatch_la-drc.Tpo .deps/libdispatch_la-drc.Plo mv -f .deps/libdispatch_la-dfile.Tpo .deps/libdispatch_la-dfile.Plo libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-nctime.lo -MD -MP -MF .deps/libdispatch_la-nctime.Tpo -c nctime.c -o libdispatch_la-nctime.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dvarget.lo -MD -MP -MF .deps/libdispatch_la-dvarget.Tpo -c dvarget.c -o libdispatch_la-dvarget.o >/dev/null 2>&1 mv -f .deps/libdispatch_la-dcopy.Tpo .deps/libdispatch_la-dcopy.Plo libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-dvarput.lo -MD -MP -MF .deps/libdispatch_la-dvarput.Tpo -c dvarput.c -o libdispatch_la-dvarput.o >/dev/null 2>&1 mv -f .deps/libnetcdf2_la-dv2i.Tpo .deps/libnetcdf2_la-dv2i.Plo /bin/bash ../libtool --tag=CC --mode=link /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -o libnetcdf2.la libnetcdf2_la-dv2i.lo -lpnetcdf -lm -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lpnetcdf -lstdc++ -ldl -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lmpifort -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lgfortran -lm -lgcc_s -lquadmath -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lz -lm -lstdc++ -ldl mv -f .deps/libdispatch_la-ncuri.Tpo .deps/libdispatch_la-ncuri.Plo libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libdispatch_la-utf8proc.lo -MD -MP -MF .deps/libdispatch_la-utf8proc.Tpo -c utf8proc.c -o libdispatch_la-utf8proc.o >/dev/null 2>&1 mv -f .deps/libdispatch_la-nctime.Tpo .deps/libdispatch_la-nctime.Plo mv -f .deps/libdispatch_la-dvarget.Tpo .deps/libdispatch_la-dvarget.Plo libtool: link: /usr/bin/ar cru .libs/libnetcdf2.a .libs/libnetcdf2_la-dv2i.o libtool: link: ranlib .libs/libnetcdf2.a mv -f .deps/libdispatch_la-dvarput.Tpo .deps/libdispatch_la-dvarput.Plo libtool: link: ( cd ".libs" && rm -f "libnetcdf2.la" && ln -s "../libnetcdf2.la" "libnetcdf2.la" ) mv -f .deps/libdispatch_la-utf8proc.Tpo .deps/libdispatch_la-utf8proc.Plo /bin/bash ../libtool --tag=CC --mode=link /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -o libdispatch.la libdispatch_la-dparallel.lo libdispatch_la-dcopy.lo libdispatch_la-dfile.lo libdispatch_la-ddim.lo libdispatch_la-datt.lo libdispatch_la-dattinq.lo libdispatch_la-dattput.lo libdispatch_la-dattget.lo libdispatch_la-derror.lo libdispatch_la-dvar.lo libdispatch_la-dvarget.lo libdispatch_la-dvarput.lo libdispatch_la-dvarinq.lo libdispatch_la-dinternal.lo libdispatch_la-ddispatch.lo libdispatch_la-dutf8.lo libdispatch_la-nclog.lo libdispatch_la-dstring.lo libdispatch_la-ncuri.lo libdispatch_la-nclist.lo libdispatch_la-ncbytes.lo libdispatch_la-nchashmap.lo libdispatch_la-nctime.lo libdispatch_la-nc.lo libdispatch_la-nclistmgr.lo libdispatch_la-drc.lo libdispatch_la-doffsets.lo libdispatch_la-dwinpath.lo libdispatch_la-utf8proc.lo libdispatch_la-dgroup.lo libdispatch_la-dvlen.lo libdispatch_la-dcompound.lo libdispatch_la-dtype.lo libdispatch_la-denum.lo libdispatch_la-dopaque.lo libdispatch_la-ncaux.lo -lpnetcdf -lm -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lpnetcdf -lstdc++ -ldl -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lmpifort -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lgfortran -lm -lgcc_s -lquadmath -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lz -lm -lstdc++ -ldl libtool: link: /usr/bin/ar cru .libs/libdispatch.a .libs/libdispatch_la-dparallel.o .libs/libdispatch_la-dcopy.o .libs/libdispatch_la-dfile.o .libs/libdispatch_la-ddim.o .libs/libdispatch_la-datt.o .libs/libdispatch_la-dattinq.o .libs/libdispatch_la-dattput.o .libs/libdispatch_la-dattget.o .libs/libdispatch_la-derror.o .libs/libdispatch_la-dvar.o .libs/libdispatch_la-dvarget.o .libs/libdispatch_la-dvarput.o .libs/libdispatch_la-dvarinq.o .libs/libdispatch_la-dinternal.o .libs/libdispatch_la-ddispatch.o .libs/libdispatch_la-dutf8.o .libs/libdispatch_la-nclog.o .libs/libdispatch_la-dstring.o .libs/libdispatch_la-ncuri.o .libs/libdispatch_la-nclist.o .libs/libdispatch_la-ncbytes.o .libs/libdispatch_la-nchashmap.o .libs/libdispatch_la-nctime.o .libs/libdispatch_la-nc.o .libs/libdispatch_la-nclistmgr.o .libs/libdispatch_la-drc.o .libs/libdispatch_la-doffsets.o .libs/libdispatch_la-dwinpath.o .libs/libdispatch_la-utf8proc.o .libs/libdispatch_la-dgroup.o .libs/libdispatch_la-dvlen.o .libs/libdispatch_la-dcompound.o .libs/libdispatch_la-dtype.o .libs/libdispatch_la-denum.o .libs/libdispatch_la-dopaque.o .libs/libdispatch_la-ncaux.o libtool: link: ranlib .libs/libdispatch.a libtool: link: ( cd ".libs" && rm -f "libdispatch.la" && ln -s "../libdispatch.la" "libdispatch.la" ) make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libdispatch' Making all in libsrc make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libsrc' /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-v1hpg.lo -MD -MP -MF .deps/libnetcdf3_la-v1hpg.Tpo -c -o libnetcdf3_la-v1hpg.lo `test -f 'v1hpg.c' || echo './'`v1hpg.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-putget.lo -MD -MP -MF .deps/libnetcdf3_la-putget.Tpo -c -o libnetcdf3_la-putget.lo `test -f 'putget.c' || echo './'`putget.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-attr.lo -MD -MP -MF .deps/libnetcdf3_la-attr.Tpo -c -o libnetcdf3_la-attr.lo `test -f 'attr.c' || echo './'`attr.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-nc3dispatch.lo -MD -MP -MF .deps/libnetcdf3_la-nc3dispatch.Tpo -c -o libnetcdf3_la-nc3dispatch.lo `test -f 'nc3dispatch.c' || echo './'`nc3dispatch.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-nc3internal.lo -MD -MP -MF .deps/libnetcdf3_la-nc3internal.Tpo -c -o libnetcdf3_la-nc3internal.lo `test -f 'nc3internal.c' || echo './'`nc3internal.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-var.lo -MD -MP -MF .deps/libnetcdf3_la-var.Tpo -c -o libnetcdf3_la-var.lo `test -f 'var.c' || echo './'`var.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-dim.lo -MD -MP -MF .deps/libnetcdf3_la-dim.Tpo -c -o libnetcdf3_la-dim.lo `test -f 'dim.c' || echo './'`dim.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-ncx.lo -MD -MP -MF .deps/libnetcdf3_la-ncx.Tpo -c -o libnetcdf3_la-ncx.lo `test -f 'ncx.c' || echo './'`ncx.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-nc_hashmap.lo -MD -MP -MF .deps/libnetcdf3_la-nc_hashmap.Tpo -c -o libnetcdf3_la-nc_hashmap.lo `test -f 'nc_hashmap.c' || echo './'`nc_hashmap.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-lookup3.lo -MD -MP -MF .deps/libnetcdf3_la-lookup3.Tpo -c -o libnetcdf3_la-lookup3.lo `test -f 'lookup3.c' || echo './'`lookup3.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-ncio.lo -MD -MP -MF .deps/libnetcdf3_la-ncio.Tpo -c -o libnetcdf3_la-ncio.lo `test -f 'ncio.c' || echo './'`ncio.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-memio.lo -MD -MP -MF .deps/libnetcdf3_la-memio.Tpo -c -o libnetcdf3_la-memio.lo `test -f 'memio.c' || echo './'`memio.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-posixio.lo -MD -MP -MF .deps/libnetcdf3_la-posixio.Tpo -c -o libnetcdf3_la-posixio.lo `test -f 'posixio.c' || echo './'`posixio.c libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-v1hpg.lo -MD -MP -MF .deps/libnetcdf3_la-v1hpg.Tpo -c v1hpg.c -fPIC -DPIC -o .libs/libnetcdf3_la-v1hpg.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-putget.lo -MD -MP -MF .deps/libnetcdf3_la-putget.Tpo -c putget.c -fPIC -DPIC -o .libs/libnetcdf3_la-putget.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-nc3dispatch.lo -MD -MP -MF .deps/libnetcdf3_la-nc3dispatch.Tpo -c nc3dispatch.c -fPIC -DPIC -o .libs/libnetcdf3_la-nc3dispatch.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-nc3internal.lo -MD -MP -MF .deps/libnetcdf3_la-nc3internal.Tpo -c nc3internal.c -fPIC -DPIC -o .libs/libnetcdf3_la-nc3internal.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-memio.lo -MD -MP -MF .deps/libnetcdf3_la-memio.Tpo -c memio.c -fPIC -DPIC -o .libs/libnetcdf3_la-memio.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-nc_hashmap.lo -MD -MP -MF .deps/libnetcdf3_la-nc_hashmap.Tpo -c nc_hashmap.c -fPIC -DPIC -o .libs/libnetcdf3_la-nc_hashmap.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-lookup3.lo -MD -MP -MF .deps/libnetcdf3_la-lookup3.Tpo -c lookup3.c -fPIC -DPIC -o .libs/libnetcdf3_la-lookup3.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-attr.lo -MD -MP -MF .deps/libnetcdf3_la-attr.Tpo -c attr.c -fPIC -DPIC -o .libs/libnetcdf3_la-attr.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-dim.lo -MD -MP -MF .deps/libnetcdf3_la-dim.Tpo -c dim.c -fPIC -DPIC -o .libs/libnetcdf3_la-dim.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-posixio.lo -MD -MP -MF .deps/libnetcdf3_la-posixio.Tpo -c posixio.c -fPIC -DPIC -o .libs/libnetcdf3_la-posixio.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-var.lo -MD -MP -MF .deps/libnetcdf3_la-var.Tpo -c var.c -fPIC -DPIC -o .libs/libnetcdf3_la-var.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-ncx.lo -MD -MP -MF .deps/libnetcdf3_la-ncx.Tpo -c ncx.c -fPIC -DPIC -o .libs/libnetcdf3_la-ncx.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-ncio.lo -MD -MP -MF .deps/libnetcdf3_la-ncio.Tpo -c ncio.c -fPIC -DPIC -o .libs/libnetcdf3_la-ncio.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-ncio.lo -MD -MP -MF .deps/libnetcdf3_la-ncio.Tpo -c ncio.c -o libnetcdf3_la-ncio.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-lookup3.lo -MD -MP -MF .deps/libnetcdf3_la-lookup3.Tpo -c lookup3.c -o libnetcdf3_la-lookup3.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-dim.lo -MD -MP -MF .deps/libnetcdf3_la-dim.Tpo -c dim.c -o libnetcdf3_la-dim.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-memio.lo -MD -MP -MF .deps/libnetcdf3_la-memio.Tpo -c memio.c -o libnetcdf3_la-memio.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-nc3dispatch.lo -MD -MP -MF .deps/libnetcdf3_la-nc3dispatch.Tpo -c nc3dispatch.c -o libnetcdf3_la-nc3dispatch.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-nc_hashmap.lo -MD -MP -MF .deps/libnetcdf3_la-nc_hashmap.Tpo -c nc_hashmap.c -o libnetcdf3_la-nc_hashmap.o >/dev/null 2>&1 mv -f .deps/libnetcdf3_la-ncio.Tpo .deps/libnetcdf3_la-ncio.Plo libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-var.lo -MD -MP -MF .deps/libnetcdf3_la-var.Tpo -c var.c -o libnetcdf3_la-var.o >/dev/null 2>&1 mv -f .deps/libnetcdf3_la-lookup3.Tpo .deps/libnetcdf3_la-lookup3.Plo libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-attr.lo -MD -MP -MF .deps/libnetcdf3_la-attr.Tpo -c attr.c -o libnetcdf3_la-attr.o >/dev/null 2>&1 mv -f .deps/libnetcdf3_la-dim.Tpo .deps/libnetcdf3_la-dim.Plo libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-nc3internal.lo -MD -MP -MF .deps/libnetcdf3_la-nc3internal.Tpo -c nc3internal.c -o libnetcdf3_la-nc3internal.o >/dev/null 2>&1 mv -f .deps/libnetcdf3_la-nc3dispatch.Tpo .deps/libnetcdf3_la-nc3dispatch.Plo libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-posixio.lo -MD -MP -MF .deps/libnetcdf3_la-posixio.Tpo -c posixio.c -o libnetcdf3_la-posixio.o >/dev/null 2>&1 mv -f .deps/libnetcdf3_la-memio.Tpo .deps/libnetcdf3_la-memio.Plo mv -f .deps/libnetcdf3_la-nc_hashmap.Tpo .deps/libnetcdf3_la-nc_hashmap.Plo libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-v1hpg.lo -MD -MP -MF .deps/libnetcdf3_la-v1hpg.Tpo -c v1hpg.c -o libnetcdf3_la-v1hpg.o >/dev/null 2>&1 mv -f .deps/libnetcdf3_la-var.Tpo .deps/libnetcdf3_la-var.Plo mv -f .deps/libnetcdf3_la-attr.Tpo .deps/libnetcdf3_la-attr.Plo mv -f .deps/libnetcdf3_la-nc3internal.Tpo .deps/libnetcdf3_la-nc3internal.Plo mv -f .deps/libnetcdf3_la-posixio.Tpo .deps/libnetcdf3_la-posixio.Plo mv -f .deps/libnetcdf3_la-v1hpg.Tpo .deps/libnetcdf3_la-v1hpg.Plo libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-putget.lo -MD -MP -MF .deps/libnetcdf3_la-putget.Tpo -c putget.c -o libnetcdf3_la-putget.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf3_la-ncx.lo -MD -MP -MF .deps/libnetcdf3_la-ncx.Tpo -c ncx.c -o libnetcdf3_la-ncx.o >/dev/null 2>&1 mv -f .deps/libnetcdf3_la-putget.Tpo .deps/libnetcdf3_la-putget.Plo mv -f .deps/libnetcdf3_la-ncx.Tpo .deps/libnetcdf3_la-ncx.Plo /bin/bash ../libtool --tag=CC --mode=link /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -o libnetcdf3.la libnetcdf3_la-v1hpg.lo libnetcdf3_la-putget.lo libnetcdf3_la-attr.lo libnetcdf3_la-nc3dispatch.lo libnetcdf3_la-nc3internal.lo libnetcdf3_la-var.lo libnetcdf3_la-dim.lo libnetcdf3_la-ncx.lo libnetcdf3_la-nc_hashmap.lo libnetcdf3_la-lookup3.lo libnetcdf3_la-ncio.lo libnetcdf3_la-memio.lo libnetcdf3_la-posixio.lo -lpnetcdf -lm -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lpnetcdf -lstdc++ -ldl -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lmpifort -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lgfortran -lm -lgcc_s -lquadmath -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lz -lm -lstdc++ -ldl libtool: link: /usr/bin/ar cru .libs/libnetcdf3.a .libs/libnetcdf3_la-v1hpg.o .libs/libnetcdf3_la-putget.o .libs/libnetcdf3_la-attr.o .libs/libnetcdf3_la-nc3dispatch.o .libs/libnetcdf3_la-nc3internal.o .libs/libnetcdf3_la-var.o .libs/libnetcdf3_la-dim.o .libs/libnetcdf3_la-ncx.o .libs/libnetcdf3_la-nc_hashmap.o .libs/libnetcdf3_la-lookup3.o .libs/libnetcdf3_la-ncio.o .libs/libnetcdf3_la-memio.o .libs/libnetcdf3_la-posixio.o libtool: link: ranlib .libs/libnetcdf3.a libtool: link: ( cd ".libs" && rm -f "libnetcdf3.la" && ln -s "../libnetcdf3.la" "libnetcdf3.la" ) make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libsrc' Making all in libsrc4 make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libsrc4' /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4dispatch.lo -MD -MP -MF .deps/libnetcdf4_la-nc4dispatch.Tpo -c -o libnetcdf4_la-nc4dispatch.lo `test -f 'nc4dispatch.c' || echo './'`nc4dispatch.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4attr.lo -MD -MP -MF .deps/libnetcdf4_la-nc4attr.Tpo -c -o libnetcdf4_la-nc4attr.lo `test -f 'nc4attr.c' || echo './'`nc4attr.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4dim.lo -MD -MP -MF .deps/libnetcdf4_la-nc4dim.Tpo -c -o libnetcdf4_la-nc4dim.lo `test -f 'nc4dim.c' || echo './'`nc4dim.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4file.lo -MD -MP -MF .deps/libnetcdf4_la-nc4file.Tpo -c -o libnetcdf4_la-nc4file.lo `test -f 'nc4file.c' || echo './'`nc4file.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4grp.lo -MD -MP -MF .deps/libnetcdf4_la-nc4grp.Tpo -c -o libnetcdf4_la-nc4grp.lo `test -f 'nc4grp.c' || echo './'`nc4grp.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4hdf.lo -MD -MP -MF .deps/libnetcdf4_la-nc4hdf.Tpo -c -o libnetcdf4_la-nc4hdf.lo `test -f 'nc4hdf.c' || echo './'`nc4hdf.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4internal.lo -MD -MP -MF .deps/libnetcdf4_la-nc4internal.Tpo -c -o libnetcdf4_la-nc4internal.lo `test -f 'nc4internal.c' || echo './'`nc4internal.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4type.lo -MD -MP -MF .deps/libnetcdf4_la-nc4type.Tpo -c -o libnetcdf4_la-nc4type.lo `test -f 'nc4type.c' || echo './'`nc4type.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4var.lo -MD -MP -MF .deps/libnetcdf4_la-nc4var.Tpo -c -o libnetcdf4_la-nc4var.lo `test -f 'nc4var.c' || echo './'`nc4var.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-ncfunc.lo -MD -MP -MF .deps/libnetcdf4_la-ncfunc.Tpo -c -o libnetcdf4_la-ncfunc.lo `test -f 'ncfunc.c' || echo './'`ncfunc.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-error4.lo -MD -MP -MF .deps/libnetcdf4_la-error4.Tpo -c -o libnetcdf4_la-error4.lo `test -f 'error4.c' || echo './'`error4.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4info.lo -MD -MP -MF .deps/libnetcdf4_la-nc4info.Tpo -c -o libnetcdf4_la-nc4info.lo `test -f 'nc4info.c' || echo './'`nc4info.c /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4printer.lo -MD -MP -MF .deps/libnetcdf4_la-nc4printer.Tpo -c -o libnetcdf4_la-nc4printer.lo `test -f 'nc4printer.c' || echo './'`nc4printer.c libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4file.lo -MD -MP -MF .deps/libnetcdf4_la-nc4file.Tpo -c nc4file.c -fPIC -DPIC -o .libs/libnetcdf4_la-nc4file.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4grp.lo -MD -MP -MF .deps/libnetcdf4_la-nc4grp.Tpo -c nc4grp.c -fPIC -DPIC -o .libs/libnetcdf4_la-nc4grp.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4dim.lo -MD -MP -MF .deps/libnetcdf4_la-nc4dim.Tpo -c nc4dim.c -fPIC -DPIC -o .libs/libnetcdf4_la-nc4dim.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4info.lo -MD -MP -MF .deps/libnetcdf4_la-nc4info.Tpo -c nc4info.c -fPIC -DPIC -o .libs/libnetcdf4_la-nc4info.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4hdf.lo -MD -MP -MF .deps/libnetcdf4_la-nc4hdf.Tpo -c nc4hdf.c -fPIC -DPIC -o .libs/libnetcdf4_la-nc4hdf.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4dispatch.lo -MD -MP -MF .deps/libnetcdf4_la-nc4dispatch.Tpo -c nc4dispatch.c -fPIC -DPIC -o .libs/libnetcdf4_la-nc4dispatch.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4type.lo -MD -MP -MF .deps/libnetcdf4_la-nc4type.Tpo -c nc4type.c -fPIC -DPIC -o .libs/libnetcdf4_la-nc4type.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4attr.lo -MD -MP -MF .deps/libnetcdf4_la-nc4attr.Tpo -c nc4attr.c -fPIC -DPIC -o .libs/libnetcdf4_la-nc4attr.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-error4.lo -MD -MP -MF .deps/libnetcdf4_la-error4.Tpo -c error4.c -fPIC -DPIC -o .libs/libnetcdf4_la-error4.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-ncfunc.lo -MD -MP -MF .deps/libnetcdf4_la-ncfunc.Tpo -c ncfunc.c -fPIC -DPIC -o .libs/libnetcdf4_la-ncfunc.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4var.lo -MD -MP -MF .deps/libnetcdf4_la-nc4var.Tpo -c nc4var.c -fPIC -DPIC -o .libs/libnetcdf4_la-nc4var.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4printer.lo -MD -MP -MF .deps/libnetcdf4_la-nc4printer.Tpo -c nc4printer.c -fPIC -DPIC -o .libs/libnetcdf4_la-nc4printer.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4internal.lo -MD -MP -MF .deps/libnetcdf4_la-nc4internal.Tpo -c nc4internal.c -fPIC -DPIC -o .libs/libnetcdf4_la-nc4internal.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4dispatch.lo -MD -MP -MF .deps/libnetcdf4_la-nc4dispatch.Tpo -c nc4dispatch.c -o libnetcdf4_la-nc4dispatch.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-error4.lo -MD -MP -MF .deps/libnetcdf4_la-error4.Tpo -c error4.c -o libnetcdf4_la-error4.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-ncfunc.lo -MD -MP -MF .deps/libnetcdf4_la-ncfunc.Tpo -c ncfunc.c -o libnetcdf4_la-ncfunc.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4info.lo -MD -MP -MF .deps/libnetcdf4_la-nc4info.Tpo -c nc4info.c -o libnetcdf4_la-nc4info.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4dim.lo -MD -MP -MF .deps/libnetcdf4_la-nc4dim.Tpo -c nc4dim.c -o libnetcdf4_la-nc4dim.o >/dev/null 2>&1 mv -f .deps/libnetcdf4_la-nc4dispatch.Tpo .deps/libnetcdf4_la-nc4dispatch.Plo libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4grp.lo -MD -MP -MF .deps/libnetcdf4_la-nc4grp.Tpo -c nc4grp.c -o libnetcdf4_la-nc4grp.o >/dev/null 2>&1 mv -f .deps/libnetcdf4_la-error4.Tpo .deps/libnetcdf4_la-error4.Plo libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4type.lo -MD -MP -MF .deps/libnetcdf4_la-nc4type.Tpo -c nc4type.c -o libnetcdf4_la-nc4type.o >/dev/null 2>&1 mv -f .deps/libnetcdf4_la-ncfunc.Tpo .deps/libnetcdf4_la-ncfunc.Plo libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4attr.lo -MD -MP -MF .deps/libnetcdf4_la-nc4attr.Tpo -c nc4attr.c -o libnetcdf4_la-nc4attr.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4printer.lo -MD -MP -MF .deps/libnetcdf4_la-nc4printer.Tpo -c nc4printer.c -o libnetcdf4_la-nc4printer.o >/dev/null 2>&1 mv -f .deps/libnetcdf4_la-nc4dim.Tpo .deps/libnetcdf4_la-nc4dim.Plo mv -f .deps/libnetcdf4_la-nc4info.Tpo .deps/libnetcdf4_la-nc4info.Plo libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4internal.lo -MD -MP -MF .deps/libnetcdf4_la-nc4internal.Tpo -c nc4internal.c -o libnetcdf4_la-nc4internal.o >/dev/null 2>&1 mv -f .deps/libnetcdf4_la-nc4grp.Tpo .deps/libnetcdf4_la-nc4grp.Plo mv -f .deps/libnetcdf4_la-nc4type.Tpo .deps/libnetcdf4_la-nc4type.Plo libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4var.lo -MD -MP -MF .deps/libnetcdf4_la-nc4var.Tpo -c nc4var.c -o libnetcdf4_la-nc4var.o >/dev/null 2>&1 libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4file.lo -MD -MP -MF .deps/libnetcdf4_la-nc4file.Tpo -c nc4file.c -o libnetcdf4_la-nc4file.o >/dev/null 2>&1 mv -f .deps/libnetcdf4_la-nc4attr.Tpo .deps/libnetcdf4_la-nc4attr.Plo mv -f .deps/libnetcdf4_la-nc4printer.Tpo .deps/libnetcdf4_la-nc4printer.Plo mv -f .deps/libnetcdf4_la-nc4internal.Tpo .deps/libnetcdf4_la-nc4internal.Plo mv -f .deps/libnetcdf4_la-nc4var.Tpo .deps/libnetcdf4_la-nc4var.Plo mv -f .deps/libnetcdf4_la-nc4file.Tpo .deps/libnetcdf4_la-nc4file.Plo libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf4_la-nc4hdf.lo -MD -MP -MF .deps/libnetcdf4_la-nc4hdf.Tpo -c nc4hdf.c -o libnetcdf4_la-nc4hdf.o >/dev/null 2>&1 mv -f .deps/libnetcdf4_la-nc4hdf.Tpo .deps/libnetcdf4_la-nc4hdf.Plo /bin/bash ../libtool --tag=CC --mode=link /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -o libnetcdf4.la libnetcdf4_la-nc4dispatch.lo libnetcdf4_la-nc4attr.lo libnetcdf4_la-nc4dim.lo libnetcdf4_la-nc4file.lo libnetcdf4_la-nc4grp.lo libnetcdf4_la-nc4hdf.lo libnetcdf4_la-nc4internal.lo libnetcdf4_la-nc4type.lo libnetcdf4_la-nc4var.lo libnetcdf4_la-ncfunc.lo libnetcdf4_la-error4.lo libnetcdf4_la-nc4info.lo libnetcdf4_la-nc4printer.lo -lpnetcdf -lm -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lpnetcdf -lstdc++ -ldl -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lmpifort -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lgfortran -lm -lgcc_s -lquadmath -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lz -lm -lstdc++ -ldl libtool: link: /usr/bin/ar cru .libs/libnetcdf4.a .libs/libnetcdf4_la-nc4dispatch.o .libs/libnetcdf4_la-nc4attr.o .libs/libnetcdf4_la-nc4dim.o .libs/libnetcdf4_la-nc4file.o .libs/libnetcdf4_la-nc4grp.o .libs/libnetcdf4_la-nc4hdf.o .libs/libnetcdf4_la-nc4internal.o .libs/libnetcdf4_la-nc4type.o .libs/libnetcdf4_la-nc4var.o .libs/libnetcdf4_la-ncfunc.o .libs/libnetcdf4_la-error4.o .libs/libnetcdf4_la-nc4info.o .libs/libnetcdf4_la-nc4printer.o libtool: link: ranlib .libs/libnetcdf4.a libtool: link: ( cd ".libs" && rm -f "libnetcdf4.la" && ln -s "../libnetcdf4.la" "libnetcdf4.la" ) make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libsrc4' Making all in libsrcp make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libsrcp' /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdfp_la-ncpdispatch.lo -MD -MP -MF .deps/libnetcdfp_la-ncpdispatch.Tpo -c -o libnetcdfp_la-ncpdispatch.lo `test -f 'ncpdispatch.c' || echo './'`ncpdispatch.c libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdfp_la-ncpdispatch.lo -MD -MP -MF .deps/libnetcdfp_la-ncpdispatch.Tpo -c ncpdispatch.c -fPIC -DPIC -o .libs/libnetcdfp_la-ncpdispatch.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdfp_la-ncpdispatch.lo -MD -MP -MF .deps/libnetcdfp_la-ncpdispatch.Tpo -c ncpdispatch.c -o libnetcdfp_la-ncpdispatch.o >/dev/null 2>&1 mv -f .deps/libnetcdfp_la-ncpdispatch.Tpo .deps/libnetcdfp_la-ncpdispatch.Plo /bin/bash ../libtool --tag=CC --mode=link /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -o libnetcdfp.la libnetcdfp_la-ncpdispatch.lo -lpnetcdf -lm -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lpnetcdf -lstdc++ -ldl -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lmpifort -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lgfortran -lm -lgcc_s -lquadmath -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lz -lm -lstdc++ -ldl libtool: link: /usr/bin/ar cru .libs/libnetcdfp.a .libs/libnetcdfp_la-ncpdispatch.o libtool: link: ranlib .libs/libnetcdfp.a libtool: link: ( cd ".libs" && rm -f "libnetcdfp.la" && ln -s "../libnetcdfp.la" "libnetcdfp.la" ) make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libsrcp' Making all in liblib make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/liblib' /bin/bash ../libtool --tag=CC --mode=compile /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I../libsrcp -I../libsrc4 -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf_la-nc_initialize.lo -MD -MP -MF .deps/libnetcdf_la-nc_initialize.Tpo -c -o libnetcdf_la-nc_initialize.lo `test -f 'nc_initialize.c' || echo './'`nc_initialize.c libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I../libsrcp -I../libsrc4 -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf_la-nc_initialize.lo -MD -MP -MF .deps/libnetcdf_la-nc_initialize.Tpo -c nc_initialize.c -fPIC -DPIC -o .libs/libnetcdf_la-nc_initialize.o libtool: compile: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I../libsrcp -I../libsrc4 -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT libnetcdf_la-nc_initialize.lo -MD -MP -MF .deps/libnetcdf_la-nc_initialize.Tpo -c nc_initialize.c -o libnetcdf_la-nc_initialize.o >/dev/null 2>&1 mv -f .deps/libnetcdf_la-nc_initialize.Tpo .deps/libnetcdf_la-nc_initialize.Plo /bin/bash ../libtool --tag=CC --mode=link /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -version-info 13:0:0 -o libnetcdf.la -rpath /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib libnetcdf_la-nc_initialize.lo ../libdispatch/libnetcdf2.la ../libdispatch/libdispatch.la ../libsrc/libnetcdf3.la ../libsrcp/libnetcdfp.la ../libsrc4/libnetcdf4.la -lpnetcdf -lm -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lpnetcdf -lstdc++ -ldl -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lmpifort -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lgfortran -lm -lgcc_s -lquadmath -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lz -lm -lstdc++ -ldl libtool: link: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -shared -fPIC -DPIC .libs/libnetcdf_la-nc_initialize.o -Wl,--whole-archive ../libdispatch/.libs/libnetcdf2.a ../libdispatch/.libs/libdispatch.a ../libsrc/.libs/libnetcdf3.a ../libsrcp/.libs/libnetcdfp.a ../libsrc4/.libs/libnetcdf4.a -Wl,--no-whole-archive -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libpnetcdf.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpicxx.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpifort.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpi.so -lbacktrace -lpthread -lrt -lgfortran -lgcc_s -lquadmath /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5hl_fortran.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5_fortran.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5_hl.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5.so -lz -lm -lstdc++ -ldl -fstack-protector -O3 -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -Wl,-rpath -Wl,/usr/lib/gcc/x86_64-linux-gnu/5 -Wl,-rpath -Wl,/usr/lib/x86_64-linux-gnu -Wl,-rpath -Wl,/lib/x86_64-linux-gnu -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -Wl,-soname -Wl,libnetcdf.so.13 -o .libs/libnetcdf.so.13.0.0 libtool: link: (cd ".libs" && rm -f "libnetcdf.so.13" && ln -s "libnetcdf.so.13.0.0" "libnetcdf.so.13") libtool: link: (cd ".libs" && rm -f "libnetcdf.so" && ln -s "libnetcdf.so.13.0.0" "libnetcdf.so") libtool: link: (cd .libs/libnetcdf.lax/libnetcdf2.a && /usr/bin/ar x "/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/liblib/../libdispatch/.libs/libnetcdf2.a") libtool: link: (cd .libs/libnetcdf.lax/libdispatch.a && /usr/bin/ar x "/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/liblib/../libdispatch/.libs/libdispatch.a") libtool: link: (cd .libs/libnetcdf.lax/libnetcdf3.a && /usr/bin/ar x "/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/liblib/../libsrc/.libs/libnetcdf3.a") libtool: link: (cd .libs/libnetcdf.lax/libnetcdfp.a && /usr/bin/ar x "/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/liblib/../libsrcp/.libs/libnetcdfp.a") libtool: link: (cd .libs/libnetcdf.lax/libnetcdf4.a && /usr/bin/ar x "/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/liblib/../libsrc4/.libs/libnetcdf4.a") libtool: link: /usr/bin/ar cru .libs/libnetcdf.a libnetcdf_la-nc_initialize.o .libs/libnetcdf.lax/libnetcdf2.a/libnetcdf2_la-dv2i.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-datt.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-dattget.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-dattinq.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-dattput.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-dcompound.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-dcopy.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-ddim.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-ddispatch.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-denum.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-derror.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-dfile.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-dgroup.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-dinternal.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-doffsets.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-dopaque.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-dparallel.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-drc.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-dstring.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-dtype.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-dutf8.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-dvar.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-dvarget.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-dvarinq.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-dvarput.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-dvlen.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-dwinpath.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-nc.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-ncaux.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-ncbytes.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-nchashmap.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-nclist.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-nclistmgr.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-nclog.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-nctime.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-ncuri.o .libs/libnetcdf.lax/libdispatch.a/libdispatch_la-utf8proc.o .libs/libnetcdf.lax/libnetcdf3.a/libnetcdf3_la-attr.o .libs/libnetcdf.lax/libnetcdf3.a/libnetcdf3_la-dim.o .libs/libnetcdf.lax/libnetcdf3.a/libnetcdf3_la-lookup3.o .libs/libnetcdf.lax/libnetcdf3.a/libnetcdf3_la-memio.o .libs/libnetcdf.lax/libnetcdf3.a/libnetcdf3_la-nc3dispatch.o .libs/libnetcdf.lax/libnetcdf3.a/libnetcdf3_la-nc3internal.o .libs/libnetcdf.lax/libnetcdf3.a/libnetcdf3_la-nc_hashmap.o .libs/libnetcdf.lax/libnetcdf3.a/libnetcdf3_la-ncio.o .libs/libnetcdf.lax/libnetcdf3.a/libnetcdf3_la-ncx.o .libs/libnetcdf.lax/libnetcdf3.a/libnetcdf3_la-posixio.o .libs/libnetcdf.lax/libnetcdf3.a/libnetcdf3_la-putget.o .libs/libnetcdf.lax/libnetcdf3.a/libnetcdf3_la-v1hpg.o .libs/libnetcdf.lax/libnetcdf3.a/libnetcdf3_la-var.o .libs/libnetcdf.lax/libnetcdfp.a/libnetcdfp_la-ncpdispatch.o .libs/libnetcdf.lax/libnetcdf4.a/libnetcdf4_la-error4.o .libs/libnetcdf.lax/libnetcdf4.a/libnetcdf4_la-nc4attr.o .libs/libnetcdf.lax/libnetcdf4.a/libnetcdf4_la-nc4dim.o .libs/libnetcdf.lax/libnetcdf4.a/libnetcdf4_la-nc4dispatch.o .libs/libnetcdf.lax/libnetcdf4.a/libnetcdf4_la-nc4file.o .libs/libnetcdf.lax/libnetcdf4.a/libnetcdf4_la-nc4grp.o .libs/libnetcdf.lax/libnetcdf4.a/libnetcdf4_la-nc4hdf.o .libs/libnetcdf.lax/libnetcdf4.a/libnetcdf4_la-nc4info.o .libs/libnetcdf.lax/libnetcdf4.a/libnetcdf4_la-nc4internal.o .libs/libnetcdf.lax/libnetcdf4.a/libnetcdf4_la-nc4printer.o .libs/libnetcdf.lax/libnetcdf4.a/libnetcdf4_la-nc4type.o .libs/libnetcdf.lax/libnetcdf4.a/libnetcdf4_la-nc4var.o .libs/libnetcdf.lax/libnetcdf4.a/libnetcdf4_la-ncfunc.o libtool: link: ranlib .libs/libnetcdf.a libtool: link: rm -fr .libs/libnetcdf.lax libtool: link: ( cd ".libs" && rm -f "libnetcdf.la" && ln -s "../libnetcdf.la" "libnetcdf.la" ) make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/liblib' Making all in ncgen3 make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncgen3' depbase=`echo main.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT main.o -MD -MP -MF $depbase.Tpo -c -o main.o main.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo load.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT load.o -MD -MP -MF $depbase.Tpo -c -o load.o load.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo escapes.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT escapes.o -MD -MP -MF $depbase.Tpo -c -o escapes.o escapes.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo getfill.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT getfill.o -MD -MP -MF $depbase.Tpo -c -o getfill.o getfill.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo init.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT init.o -MD -MP -MF $depbase.Tpo -c -o init.o init.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo genlib.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT genlib.o -MD -MP -MF $depbase.Tpo -c -o genlib.o genlib.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo ncgentab.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT ncgentab.o -MD -MP -MF $depbase.Tpo -c -o ncgentab.o ncgentab.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/bash ../libtool --tag=CC --mode=link /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -o ncgen3 main.o load.o escapes.o getfill.o init.o genlib.o ncgentab.o ../liblib/libnetcdf.la -lpnetcdf -lm -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lpnetcdf -lstdc++ -ldl -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lmpifort -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lgfortran -lm -lgcc_s -lquadmath -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lz -lm -lstdc++ -ldl libtool: link: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -o .libs/ncgen3 main.o load.o escapes.o getfill.o init.o genlib.o ncgentab.o -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -Wl,-rpath -Wl,/usr/lib/gcc/x86_64-linux-gnu/5 -Wl,-rpath -Wl,/usr/lib/x86_64-linux-gnu -Wl,-rpath -Wl,/lib/x86_64-linux-gnu -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib ../liblib/.libs/libnetcdf.so -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libpnetcdf.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpicxx.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpifort.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpi.so -lbacktrace -lpthread -lrt -lgfortran -lgcc_s -lquadmath /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5hl_fortran.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5_fortran.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5_hl.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5.so -lz -lm -lstdc++ -ldl -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncgen3' Making all in ncgen make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncgen' depbase=`echo generate.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT generate.o -MD -MP -MF $depbase.Tpo -c -o generate.o generate.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo main.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT main.o -MD -MP -MF $depbase.Tpo -c -o main.o main.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo cdata.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT cdata.o -MD -MP -MF $depbase.Tpo -c -o cdata.o cdata.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo bindata.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT bindata.o -MD -MP -MF $depbase.Tpo -c -o bindata.o bindata.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo genchar.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT genchar.o -MD -MP -MF $depbase.Tpo -c -o genchar.o genchar.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo cvt.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT cvt.o -MD -MP -MF $depbase.Tpo -c -o cvt.o cvt.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo data.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT data.o -MD -MP -MF $depbase.Tpo -c -o data.o data.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo debug.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT debug.o -MD -MP -MF $depbase.Tpo -c -o debug.o debug.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo escapes.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT escapes.o -MD -MP -MF $depbase.Tpo -c -o escapes.o escapes.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo genc.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT genc.o -MD -MP -MF $depbase.Tpo -c -o genc.o genc.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo genbin.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT genbin.o -MD -MP -MF $depbase.Tpo -c -o genbin.o genbin.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo generr.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT generr.o -MD -MP -MF $depbase.Tpo -c -o generr.o generr.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo genlib.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT genlib.o -MD -MP -MF $depbase.Tpo -c -o genlib.o genlib.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo getfill.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT getfill.o -MD -MP -MF $depbase.Tpo -c -o getfill.o getfill.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo odom.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT odom.o -MD -MP -MF $depbase.Tpo -c -o odom.o odom.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo semantics.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT semantics.o -MD -MP -MF $depbase.Tpo -c -o semantics.o semantics.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo dump.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT dump.o -MD -MP -MF $depbase.Tpo -c -o dump.o dump.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo util.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT util.o -MD -MP -MF $depbase.Tpo -c -o util.o util.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo bytebuffer.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT bytebuffer.o -MD -MP -MF $depbase.Tpo -c -o bytebuffer.o bytebuffer.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo list.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT list.o -MD -MP -MF $depbase.Tpo -c -o list.o list.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo genf77.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT genf77.o -MD -MP -MF $depbase.Tpo -c -o genf77.o genf77.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo f77data.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT f77data.o -MD -MP -MF $depbase.Tpo -c -o f77data.o f77data.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo genj.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT genj.o -MD -MP -MF $depbase.Tpo -c -o genj.o genj.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo jdata.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT jdata.o -MD -MP -MF $depbase.Tpo -c -o jdata.o jdata.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo nc_iter.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT nc_iter.o -MD -MP -MF $depbase.Tpo -c -o nc_iter.o nc_iter.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo ncgeny.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT ncgeny.o -MD -MP -MF $depbase.Tpo -c -o ncgeny.o ncgeny.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/bash ../libtool --tag=CC --mode=link /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -o ncgen generate.o main.o cdata.o bindata.o genchar.o cvt.o data.o debug.o escapes.o genc.o genbin.o generr.o genlib.o getfill.o odom.o semantics.o dump.o util.o bytebuffer.o list.o genf77.o f77data.o genj.o jdata.o nc_iter.o ncgeny.o ../liblib/libnetcdf.la -lpnetcdf -lm -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lpnetcdf -lstdc++ -ldl -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lmpifort -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lgfortran -lm -lgcc_s -lquadmath -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lz -lm -lstdc++ -ldl libtool: link: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -o .libs/ncgen generate.o main.o cdata.o bindata.o genchar.o cvt.o data.o debug.o escapes.o genc.o genbin.o generr.o genlib.o getfill.o odom.o semantics.o dump.o util.o bytebuffer.o list.o genf77.o f77data.o genj.o jdata.o nc_iter.o ncgeny.o -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -Wl,-rpath -Wl,/usr/lib/gcc/x86_64-linux-gnu/5 -Wl,-rpath -Wl,/usr/lib/x86_64-linux-gnu -Wl,-rpath -Wl,/lib/x86_64-linux-gnu -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib ../liblib/.libs/libnetcdf.so -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libpnetcdf.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpicxx.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpifort.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpi.so -lbacktrace -lpthread -lrt -lgfortran -lgcc_s -lquadmath /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5hl_fortran.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5_fortran.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5_hl.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5.so -lz -lm -lstdc++ -ldl -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncgen' Making all in ncdump make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump' /usr/bin/make all-recursive make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump' Making all in cdl make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump/cdl' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump/cdl' Making all in expected make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump/expected' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump/expected' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump' depbase=`echo ncdump.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT ncdump.o -MD -MP -MF $depbase.Tpo -c -o ncdump.o ncdump.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo vardata.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT vardata.o -MD -MP -MF $depbase.Tpo -c -o vardata.o vardata.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo dumplib.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT dumplib.o -MD -MP -MF $depbase.Tpo -c -o dumplib.o dumplib.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo indent.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT indent.o -MD -MP -MF $depbase.Tpo -c -o indent.o indent.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo nctime0.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT nctime0.o -MD -MP -MF $depbase.Tpo -c -o nctime0.o nctime0.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo utils.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT utils.o -MD -MP -MF $depbase.Tpo -c -o utils.o utils.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo nciter.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT nciter.o -MD -MP -MF $depbase.Tpo -c -o nciter.o nciter.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo nccopy.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT nccopy.o -MD -MP -MF $depbase.Tpo -c -o nccopy.o nccopy.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo chunkspec.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT chunkspec.o -MD -MP -MF $depbase.Tpo -c -o chunkspec.o chunkspec.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo dimmap.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT dimmap.o -MD -MP -MF $depbase.Tpo -c -o dimmap.o dimmap.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo nc4print.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -DHAVE_CONFIG_H -I. -I.. -I../include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -fstack-protector -O3 -MT nc4print.o -MD -MP -MF $depbase.Tpo -c -o nc4print.o nc4print.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/bash ../libtool --tag=CC --mode=link /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -o nc4print nc4print.o ../liblib/libnetcdf.la -lpnetcdf -lm -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lpnetcdf -lstdc++ -ldl -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lmpifort -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lgfortran -lm -lgcc_s -lquadmath -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lz -lm -lstdc++ -ldl /bin/bash ../libtool --tag=CC --mode=link /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -o nccopy nccopy.o nciter.o chunkspec.o utils.o dimmap.o ../liblib/libnetcdf.la -lpnetcdf -lm -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lpnetcdf -lstdc++ -ldl -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lmpifort -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lgfortran -lm -lgcc_s -lquadmath -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lz -lm -lstdc++ -ldl libtool: link: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -o .libs/nc4print nc4print.o -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -Wl,-rpath -Wl,/usr/lib/gcc/x86_64-linux-gnu/5 -Wl,-rpath -Wl,/usr/lib/x86_64-linux-gnu -Wl,-rpath -Wl,/lib/x86_64-linux-gnu -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib ../liblib/.libs/libnetcdf.so -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libpnetcdf.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpicxx.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpifort.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpi.so -lbacktrace -lpthread -lrt -lgfortran -lgcc_s -lquadmath /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5hl_fortran.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5_fortran.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5_hl.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5.so -lz -lm -lstdc++ -ldl -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib /bin/bash ../libtool --tag=CC --mode=link /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -o ncdump ncdump.o vardata.o dumplib.o indent.o nctime0.o utils.o nciter.o ../liblib/libnetcdf.la -lpnetcdf -lm -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lpnetcdf -lstdc++ -ldl -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lmpifort -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lgfortran -lm -lgcc_s -lquadmath -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lz -lm -lstdc++ -ldl libtool: link: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -o .libs/nccopy nccopy.o nciter.o chunkspec.o utils.o dimmap.o -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -Wl,-rpath -Wl,/usr/lib/gcc/x86_64-linux-gnu/5 -Wl,-rpath -Wl,/usr/lib/x86_64-linux-gnu -Wl,-rpath -Wl,/lib/x86_64-linux-gnu -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib ../liblib/.libs/libnetcdf.so -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libpnetcdf.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpicxx.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpifort.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpi.so -lbacktrace -lpthread -lrt -lgfortran -lgcc_s -lquadmath /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5hl_fortran.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5_fortran.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5_hl.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5.so -lz -lm -lstdc++ -ldl -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib libtool: link: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -fstack-protector -O3 -o .libs/ncdump ncdump.o vardata.o dumplib.o indent.o nctime0.o utils.o nciter.o -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -Wl,-rpath -Wl,/usr/lib/gcc/x86_64-linux-gnu/5 -Wl,-rpath -Wl,/usr/lib/x86_64-linux-gnu -Wl,-rpath -Wl,/lib/x86_64-linux-gnu -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib ../liblib/.libs/libnetcdf.so -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libpnetcdf.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpicxx.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpifort.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libmpi.so -lbacktrace -lpthread -lrt -lgfortran -lgcc_s -lquadmath /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5hl_fortran.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5_fortran.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5_hl.so /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5.so -lz -lm -lstdc++ -ldl -Wl,-rpath -Wl,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump' Making all in nctest make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/nctest' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/nctest' Making all in nc_test make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/nc_test' cp ../libsrc/ncx.c . make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/nc_test' Making all in nc_test4 make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/nc_test4' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/nc_test4' Making all in docs make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/docs' Making all in images make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/docs/images' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/docs/images' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/docs' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/docs' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/docs' Making all in examples make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/examples' Making all in C make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/examples/C' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/examples/C' Making all in CDL make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/examples/CDL' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/examples/CDL' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/examples' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/examples' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/examples' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0'ncuri.c:71:0: warning: "strndup" redefined #define strndup ncstrndup ^ In file included from /usr/include/string.h:630:0, from ncuri.c:8: /usr/include/x86_64-linux-gnu/bits/string2.h:1319:0: note: this is the location of the previous definition # define strndup(s, n) __strndup (s, n) ^ /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') nc4hdf.c: In function ‘reportobject’: nc4hdf.c:3987:17: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 4 has type ‘hid_t {aka long int}’ [-Wformat=] fprintf(stderr,"Type = %s(%8u) name='%s'",typename,id,name); ^ nc4hdf.c: In function ‘reportopenobjectsT’: nc4hdf.c:4006:24: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘hid_t {aka long int}’ [-Wformat=] fprintf(stdout,"\nReport: open objects on %d\n",fid); ^ /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') main.c: In function ‘main’: main.c:477:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] (void)fread(bom,1,1,fp); ^ Making install in include make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/include' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/include' make[2]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include' /usr/bin/install -c -m 644 netcdf.h netcdf_meta.h netcdf_par.h netcdf_mem.h '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/include' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/include' Making install in h5_test make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/h5_test' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/h5_test' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/h5_test' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/h5_test' Making install in libdispatch make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libdispatch' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libdispatch' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libdispatch' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libdispatch' Making install in libsrc make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libsrc' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libsrc' make[2]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3' /usr/bin/install -c -m 644 netcdf.3 '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man3' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libsrc' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libsrc' Making install in libsrc4 make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libsrc4' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libsrc4' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libsrc4' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libsrc4' Making install in libsrcp make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libsrcp' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libsrcp' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libsrcp' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/libsrcp' Making install in liblib make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/liblib' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/liblib' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib' /bin/bash ../libtool --mode=install /usr/bin/install -c libnetcdf.la '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib' libtool: install: /usr/bin/install -c .libs/libnetcdf.so.13.0.0 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libnetcdf.so.13.0.0 libtool: install: (cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib && { ln -s -f libnetcdf.so.13.0.0 libnetcdf.so.13 || { rm -f libnetcdf.so.13 && ln -s libnetcdf.so.13.0.0 libnetcdf.so.13; }; }) libtool: install: (cd /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib && { ln -s -f libnetcdf.so.13.0.0 libnetcdf.so || { rm -f libnetcdf.so && ln -s libnetcdf.so.13.0.0 libnetcdf.so; }; }) libtool: install: /usr/bin/install -c .libs/libnetcdf.lai /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libnetcdf.la libtool: install: /usr/bin/install -c .libs/libnetcdf.a /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libnetcdf.a libtool: install: chmod 644 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libnetcdf.a libtool: install: ranlib /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libnetcdf.a libtool: finish: PATH="/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin:/home/dsu/Soft/PETSc/petsc-3.10.5/linux-gnu-opt/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/home/dsu/Soft/Paraview/ParaView-5.5.0/bin:/home/dsu/Soft/VisIt/visit2_13_0.linux-x86_64/bin:/home/dsu/Soft/Intel/parallel_studio_2019/bin:/home/dsu/Soft/Paraview/ParaView-5.5.0/bin:/home/dsu/Soft/VisIt/visit2_13_0.linux-x86_64/bin:/home/dsu/Soft/Intel/parallel_studio_2019/bin:/sbin" ldconfig -n /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the '-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the 'LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the 'LD_RUN_PATH' environment variable during linking - use the '-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to '/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/liblib' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/liblib' Making install in ncgen3 make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncgen3' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncgen3' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' /bin/bash ../libtool --mode=install /usr/bin/install -c ncgen3 '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' libtool: install: /usr/bin/install -c .libs/ncgen3 /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/ncgen3 /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man1' /usr/bin/install -c -m 644 ncgen3.1 '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man1' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncgen3' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncgen3' Making install in ncgen make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncgen' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncgen' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' /bin/bash ../libtool --mode=install /usr/bin/install -c ncgen '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' libtool: install: /usr/bin/install -c .libs/ncgen /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/ncgen /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man1' /usr/bin/install -c -m 644 ncgen.1 '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man1' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncgen' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncgen' Making install in ncdump make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump' /usr/bin/make install-recursive make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump' Making install in cdl make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump/cdl' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump/cdl' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump/cdl' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump/cdl' Making install in expected make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump/expected' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump/expected' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump/expected' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump/expected' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump' make[4]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' /bin/bash ../libtool --mode=install /usr/bin/install -c ncdump nccopy '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' libtool: install: /usr/bin/install -c .libs/ncdump /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/ncdump libtool: install: /usr/bin/install -c .libs/nccopy /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/nccopy /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man1' /usr/bin/install -c -m 644 ncdump.1 nccopy.1 '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/share/man/man1' make[4]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump' make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/ncdump' Making install in nctest make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/nctest' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/nctest' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/nctest' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/nctest' Making install in nc_test make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/nc_test' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/nc_test' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/nc_test' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/nc_test' Making install in nc_test4 make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/nc_test4' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/nc_test4' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/nc_test4' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/nc_test4' Making install in docs make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/docs' Making install in images make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/docs/images' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/docs/images' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/docs/images' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/docs/images' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/docs' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/docs' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/docs' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/docs' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/docs' Making install in examples make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/examples' Making install in C make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/examples/C' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/examples/C' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/examples/C' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/examples/C' Making install in CDL make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/examples/CDL' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/examples/CDL' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/examples/CDL' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/examples/CDL' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/examples' make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/examples' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/examples' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/examples' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0/examples' make[1]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0' make[2]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' /usr/bin/install -c nc-config '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/pkgconfig' /usr/bin/install -c -m 644 netcdf.pc '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/pkgconfig' /bin/mkdir -p '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib' /usr/bin/install -c -m 644 libnetcdf.settings '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib' /usr/bin/make install-data-hook make[3]: Entering directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0' +-------------------------------------------------------------+ | Congratulations! You have successfully installed netCDF! | | | | You can use script "nc-config" to find out the relevant | | compiler options to build your application. Enter | | | | nc-config --help | | | | for additional information. | | | | CAUTION: | | | | If you have not already run "make check", then we strongly | | recommend you do so. It does not take very long. | | | | Before using netCDF to store important data, test your | | build with "make check". | | | | NetCDF is tested nightly on many platforms at Unidata | | but your platform is probably different in some ways. | | | | If any tests fail, please see the netCDF web site: | | http://www.unidata.ucar.edu/software/netcdf/ | | | | NetCDF is developed and maintained at the Unidata Program | | Center. Unidata provides a broad array of data and software | | tools for use in geoscience education and research. | | http://www.unidata.ucar.edu | +-------------------------------------------------------------+ make[3]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0' make[2]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0' make[1]: Leaving directory '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/netcdf-c-4.5.0'********End of Output of running make on NETCDF ******* Checking for library in Download NETCDF: ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libnetcdf.a'] Contents: ['share', 'lib', 'externalpackages', 'include', 'bin'] ================================================================================ TEST check from config.libraries(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [nccreate] in library ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libnetcdf.a'] ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libpnetcdf.a', '-lstdc++', '-ldl', '-Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib', '-L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib', '-lmpifort', '-lmpi', '-lgfortran', '-lm', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/5', '-L/usr/lib/gcc/x86_64-linux-gnu/5', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib', '-lgfortran', '-lm', '-lgcc_s', '-lquadmath', '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libhdf5hl_fortran.a', 'libhdf5_fortran.a', 'libhdf5_hl.a', 'libhdf5.a', '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib/libz.a', 'libm.a'] Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc -c -o /tmp/petsc-oluu3nld/config.libraries/conftest.o -I/tmp/petsc-oluu3nld/config.utilities.closure -I/tmp/petsc-oluu3nld/config.compilersFortran -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.utilities.cacheDetails -I/tmp/petsc-oluu3nld/config.types -I/tmp/petsc-oluu3nld/config.functions -I/tmp/petsc-oluu3nld/config.utilities.featureTestMacros -I/tmp/petsc-oluu3nld/config.utilities.missing -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/PETSc.options.scalarTypes -I/tmp/petsc-oluu3nld/config.compilers -I/tmp/petsc-oluu3nld/config.packages.valgrind -I/tmp/petsc-oluu3nld/config.packages.MPI -I/tmp/petsc-oluu3nld/config.packages.metis -I/tmp/petsc-oluu3nld/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char nccreate(); static void _check_nccreate() { nccreate(); } int main() { _check_nccreate();; return 0; } Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx -o /tmp/petsc-oluu3nld/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 /tmp/petsc-oluu3nld/config.libraries/conftest.o -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lnetcdf -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lpnetcdf -lstdc++ -ldl -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lmpifort -lmpi -lgfortran -lm -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lgfortran -lm -lgcc_s -lquadmath -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -Wl,-rpath,/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -L/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -lz -lm -lstdc++ -ldl Defined "HAVE_LIBNETCDF" to "1" Checking for optional headers [] in Download NETCDF: ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] ================================================================================ TEST checkInclude from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files [] in ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] Found header files [] in ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] Checking for headers ['netcdf.h'] in Download NETCDF: ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] ================================================================================ TEST checkInclude from config.headers(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['netcdf.h'] in ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] Checking include with compiler flags var CXXPPFLAGS ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include', '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include', '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include', '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include', '/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include /tmp/petsc-oluu3nld/config.headers/conftest.cc Preprocess stderr before filtering:: Preprocess stderr after filtering:: Found header files ['netcdf.h'] in ['/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include'] ================================================================================ TEST checkVersion from config.packages.netcdf(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:992) TESTING: checkVersion from config.packages.netcdf(config/BuildSystem/config/package.py:992) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "netcdf_meta.h" ;petscpkgver(NC_VERSION_MAJOR.NC_VERSION_MINOR.NC_VERSION_PATCH); Running Executable WITHOUT threads to time it out Executing: /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx -E -I/tmp/petsc-oluu3nld/config.setCompilers -I/tmp/petsc-oluu3nld/config.headers -I/tmp/petsc-oluu3nld/config.packages.netcdf -I/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include /tmp/petsc-oluu3nld/config.packages.netcdf/conftest.cc For netcdf need <= 4.5.0 <= ================================================================================ TEST checkSharedLibrary from config.packages.netcdf(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:926) TESTING: checkSharedLibrary from config.packages.netcdf(config/BuildSystem/config/package.py:926) By default we don't care about checking if the library is shared child config.packages.netcdf 53.915514 ================================================================================ TEST checkDependencies from config.packages.exodusii(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:843) TESTING: checkDependencies from config.packages.exodusii(config/BuildSystem/config/package.py:843) ================================================================================ TEST configureLibrary from config.packages.exodusii(/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py:868) TESTING: configureLibrary from config.packages.exodusii(config/BuildSystem/config/package.py:868) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional exodusii Looking for EXODUSII at git.exodusii, hg.exodusii or a directory starting with ['seacas'] Could not locate an existing copy of EXODUSII: ['netcdf-c-4.5.0', 'git.parmetis', 'Chaco-2.2-p2', 'mpich-3.3.2', 'hdf5-1.12.0', 'git.ctetgen', 'zlib-1.2.11', 'git.metis', 'pnetcdf-1.12.1'] Downloading exodusii =============================================================================== Trying to download git://https://github.com/gsjaardema/seacas.git for EXODUSII =============================================================================== Running Executable WITHOUT threads to time it out Executing: git clone https://github.com/gsjaardema/seacas.git /home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/externalpackages/git.exodusii Looking for EXODUSII at git.exodusii, hg.exodusii or a directory starting with ['seacas'] Found a copy of EXODUSII in git.exodusii Running Executable WITHOUT threads to time it out Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Running Executable WITHOUT threads to time it out Executing: ['git', 'cat-file', '-e', 'e7308f4401dd8692318d22bc6abb1dc84d3fb404^{commit}'] Running Executable WITHOUT threads to time it out Executing: ['git', 'rev-parse', 'e7308f4401dd8692318d22bc6abb1dc84d3fb404'] stdout: e7308f4401dd8692318d22bc6abb1dc84d3fb404 Running Executable WITHOUT threads to time it out Executing: ['git', '-c', 'user.name=petsc-configure', '-c', 'user.email=petsc@configure', 'stash'] stdout: No local changes to save Running Executable WITHOUT threads to time it out Executing: ['git', 'clean', '-f', '-d', '-x'] Running Executable WITHOUT threads to time it out Executing: ['git', 'checkout', '-f', 'e7308f4401dd8692318d22bc6abb1dc84d3fb404'] EXODUSII was just downloaded, forcing a rebuild because cannot determine if package has changed =============================================================================== Configuring EXODUSII with cmake, this may take several minutes =============================================================================== Running Executable WITHOUT threads to time it out Executing: /usr/bin/cmake .. -DCMAKE_INSTALL_PREFIX=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt -DCMAKE_VERBOSE_MAKEFILE=1 -DCMAKE_C_COMPILER="/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc" -DCMAKE_AR=/usr/bin/ar -DCMAKE_RANLIB=/usr/bin/ranlib -DCMAKE_C_FLAGS:STRING="-fstack-protector -O3" -DCMAKE_C_FLAGS_DEBUG:STRING="-fstack-protector -O3" -DCMAKE_C_FLAGS_RELEASE:STRING="-fstack-protector -O3" -DCMAKE_CXX_COMPILER="/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx" -DCMAKE_CXX_FLAGS:STRING="-fstack-protector -O3" -DCMAKE_CXX_FLAGS_DEBUG:STRING="-fstack-protector -O3" -DCMAKE_CXX_FLAGS_RELEASE:STRING="-fstack-protector -O3" -DCMAKE_Fortran_COMPILER="/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90" -DCMAKE_Fortran_FLAGS:STRING="-ffree-line-length-0 -O3" -DCMAKE_Fortran_FLAGS_DEBUG:STRING="-ffree-line-length-0 -O3" -DCMAKE_Fortran_FLAGS_RELEASE:STRING="-ffree-line-length-0 -O3" -DBUILD_SHARED_LIBS=on -DACCESSDIR:PATH=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt -DCMAKE_INSTALL_PREFIX:PATH=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt -DCMAKE_INSTALL_RPATH:PATH=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -DCMAKE_C_COMPILER:FILEPATH="/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc" -DCMAKE_Fortran_COMPILER:FILEPATH="/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90" -DSEACASProj_ENABLE_SEACASExodus_for=ON -DSEACASProj_ENABLE_SEACASExoIIv2for32=ON -DSEACASProj_ENABLE_SEACASExodus=ON -DSEACASProj_ENABLE_TESTS=ON -DSEACASProj_SKIP_FORTRANCINTERFACE_VERIFY_TEST:BOOL=ON -DTPL_ENABLE_Matio:BOOL=OFF -DTPL_ENABLE_Netcdf:BOOL=ON -DTPL_ENABLE_Pnetcdf:BOOL=ON -DTPL_Netcdf_Enables_PNetcdf:BOOL=ON -DTPL_ENABLE_MPI=ON -DTPL_ENABLE_Pamgen=OFF -DTPL_ENABLE_CGNS:BOOL=OFF -DNetCDF_DIR:PATH=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt -DHDF5_DIR:PATH=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt -DPnetcdf_LIBRARY_DIRS:PATH=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -DPnetcdf_INCLUDE_DIRS:PATH=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -DBUILD_SHARED_LIBS:BOOL=ON -DCMAKE_BUILD_TYPE=Release stdout: -- Configuring incomplete, errors occurred! Error configuring EXODUSII with cmake Could not execute "['/usr/bin/cmake .. -DCMAKE_INSTALL_PREFIX=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt -DCMAKE_VERBOSE_MAKEFILE=1 -DCMAKE_C_COMPILER="/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc" -DCMAKE_AR=/usr/bin/ar -DCMAKE_RANLIB=/usr/bin/ranlib -DCMAKE_C_FLAGS:STRING="-fstack-protector -O3" -DCMAKE_C_FLAGS_DEBUG:STRING="-fstack-protector -O3" -DCMAKE_C_FLAGS_RELEASE:STRING="-fstack-protector -O3" -DCMAKE_CXX_COMPILER="/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicxx" -DCMAKE_CXX_FLAGS:STRING="-fstack-protector -O3" -DCMAKE_CXX_FLAGS_DEBUG:STRING="-fstack-protector -O3" -DCMAKE_CXX_FLAGS_RELEASE:STRING="-fstack-protector -O3" -DCMAKE_Fortran_COMPILER="/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90" -DCMAKE_Fortran_FLAGS:STRING="-ffree-line-length-0 -O3" -DCMAKE_Fortran_FLAGS_DEBUG:STRING="-ffree-line-length-0 -O3" -DCMAKE_Fortran_FLAGS_RELEASE:STRING="-ffree-line-length-0 -O3" -DBUILD_SHARED_LIBS=on -DACCESSDIR:PATH=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt -DCMAKE_INSTALL_PREFIX:PATH=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt -DCMAKE_INSTALL_RPATH:PATH=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -DCMAKE_C_COMPILER:FILEPATH="/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpicc" -DCMAKE_Fortran_COMPILER:FILEPATH="/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/bin/mpif90" -DSEACASProj_ENABLE_SEACASExodus_for=ON -DSEACASProj_ENABLE_SEACASExoIIv2for32=ON -DSEACASProj_ENABLE_SEACASExodus=ON -DSEACASProj_ENABLE_TESTS=ON -DSEACASProj_SKIP_FORTRANCINTERFACE_VERIFY_TEST:BOOL=ON -DTPL_ENABLE_Matio:BOOL=OFF -DTPL_ENABLE_Netcdf:BOOL=ON -DTPL_ENABLE_Pnetcdf:BOOL=ON -DTPL_Netcdf_Enables_PNetcdf:BOOL=ON -DTPL_ENABLE_MPI=ON -DTPL_ENABLE_Pamgen=OFF -DTPL_ENABLE_CGNS:BOOL=OFF -DNetCDF_DIR:PATH=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt -DHDF5_DIR:PATH=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt -DPnetcdf_LIBRARY_DIRS:PATH=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/lib -DPnetcdf_INCLUDE_DIRS:PATH=/home/dsu/Soft/PETSc/petsc-3.13.2/linux-gnu-opt/include -DBUILD_SHARED_LIBS:BOOL=ON -DCMAKE_BUILD_TYPE=Release']": -- Configuring incomplete, errors occurred!CMake Error at CMakeLists.txt:16 (CMAKE_MINIMUM_REQUIRED): CMake 3.10.0 or higher is required. You are running version 3.5.1 **** Configure header /tmp/petsc-oluu3nld/confdefs.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #define IS_COLORING_MAX USHRT_MAX #define MPIU_COLORING_VALUE MPI_UNSIGNED_SHORT #define PETSC_CLANGUAGE_C 1 #define PETSC_HAVE_ERF 1 #define PETSC_HAVE_FENV_H 1 #define PETSC_HAVE_LGAMMA 1 #define PETSC_HAVE_LOG2 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_CXX_INLINE inline #define PETSC_CXX_RESTRICT __restrict #define PETSC_C_INLINE inline #define PETSC_C_RESTRICT __restrict #define PETSC_FORTRAN_CHARLEN_T int #define PETSC_HAVE_C99 1 #define PETSC_HAVE_CXX_DIALECT_CXX11 1 #define PETSC_HAVE_FORTRAN_UNDERSCORE 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_IMMINTRIN_H 1 #define PETSC_HAVE_INTTYPES_H 1 #define PETSC_HAVE_MALLOC_H 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_PTHREAD_H 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_SYS_PROCFS_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_SYS_SYSINFO_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_ISINF 1 #define PETSC_HAVE_ISNAN 1 #define PETSC_HAVE_ISNORMAL 1 #define PETSC_HAVE_REAL___FLOAT128 1 #define PETSC_USE_REAL_DOUBLE 1 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_HAVE_STRUCT_SIGACTION 1 #define PETSC_SIZEOF_ENUM 4 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG 8 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_USE_VISIBILITY_C 1 #define PETSC_USE_VISIBILITY_CXX 1 #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_BZERO 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_GETWD 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_MEMALIGN 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE_MMAP 1 #define PETSC_HAVE_NANOSLEEP 1 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_SYSINFO 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_USLEEP 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_SIGNAL_CAST #define PETSC_FORTRAN_TYPE_INITIALIZE = -2 #define PETSC_HAVE_FORTRAN_FLUSH 1 #define PETSC_HAVE_FORTRAN_TYPE_STAR 1 #define PETSC_USING_F2003 1 #define PETSC_USING_F90FREEFORM 1 #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_USE_SHARED_LIBRARIES 1 #define PETSC_USE_DEBUGGER "gdb" #define PETSC_HAVE_MPICH_NUMVERSION 30302300 #define PETSC_HAVE_MPIEXEC_ENVIRONMENTAL_VARIABLE MPIR_CVAR_CH3 #define PETSC_HAVE_MPIIO 1 #define PETSC_HAVE_MPI_COMBINER_CONTIGUOUS 1 #define PETSC_HAVE_MPI_COMBINER_DUP 1 #define PETSC_HAVE_MPI_COMBINER_NAMED 1 #define PETSC_HAVE_MPI_C_DOUBLE_COMPLEX 1 #define PETSC_HAVE_MPI_EXSCAN 1 #define PETSC_HAVE_MPI_F90MODULE 1 #define PETSC_HAVE_MPI_FINALIZED 1 #define PETSC_HAVE_MPI_GET_ACCUMULATE 1 #define PETSC_HAVE_MPI_GET_LIBRARY_VERSION 1 #define PETSC_HAVE_MPI_IALLREDUCE 1 #define PETSC_HAVE_MPI_IBARRIER 1 #define PETSC_HAVE_MPI_INIT_THREAD 1 #define PETSC_HAVE_MPI_INT64_T 1 #define PETSC_HAVE_MPI_IN_PLACE 1 #define PETSC_HAVE_MPI_LONG_DOUBLE 1 #define PETSC_HAVE_MPI_NEIGHBORHOOD_COLLECTIVES 1 #define PETSC_HAVE_MPI_NONBLOCKING_COLLECTIVES 1 #define PETSC_HAVE_MPI_ONE_SIDED 1 #define PETSC_HAVE_MPI_PROCESS_SHARED_MEMORY 1 #define PETSC_HAVE_MPI_REDUCE_LOCAL 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER_BLOCK 1 #define PETSC_HAVE_MPI_RGET 1 #define PETSC_HAVE_MPI_TYPE_DUP 1 #define PETSC_HAVE_MPI_TYPE_GET_ENVELOPE 1 #define PETSC_HAVE_MPI_WIN_CREATE 1 #define PETSC_Alignx(a,b) #define PETSC_IS_COLOR_VALUE_TYPE short #define PETSC_IS_COLOR_VALUE_TYPE_F integer2 #define PETSC_USE_AVX512_KERNELS 1 #define PETSC_USE_BACKWARD_LOOP 1 #define PETSC_USE_CTABLE 1 #define PETSC_USE_INFO 1 #define PETSC_USE_LOG 1 #define PETSC_USE_MALLOC_COALESCED 1 #define PETSC_MEMALIGN 16 #define PETSC_LEVEL1_DCACHE_LINESIZE 64 #define PETSC__BSD_SOURCE 1 #define PETSC__DEFAULT_SOURCE 1 #define PETSC__GNU_SOURCE 1 #define PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT 1 #define PETSC_USE_PROC_FOR_SIZE 1 #define PETSC_HDF5_HAVE_PARALLEL 1 #define PETSC_HDF5_HAVE_ZLIB 1 #define PETSC_PYTHON_EXE "/usr/bin/python3" #define PETSC_HAVE_VALGRIND 1 #endif **** C specific Configure header /tmp/petsc-oluu3nld/conffix.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #if defined(__cplusplus) extern "C" { } #else #endif #endif ******************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): ------------------------------------------------------------------------------- Error configuring EXODUSII with cmake ******************************************************************************* File "/home/dsu/Soft/PETSc/petsc-3.13.2/config/configure.py", line 451, in petsc_configure framework.configure(out = sys.stdout) File "/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/framework.py", line 1229, in configure self.processChildren() File "/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/framework.py", line 1218, in processChildren self.serialEvaluation(self.childGraph) File "/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/framework.py", line 1193, in serialEvaluation child.configure() File "/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py", line 1110, in configure self.executeTest(self.configureLibrary) File "/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/base.py", line 139, in executeTest ret = test(*args,**kargs) File "/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py", line 875, in configureLibrary for location, directory, lib, incl in self.generateGuesses(): File "/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py", line 453, in generateGuesses d = self.checkDownload() File "/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py", line 587, in checkDownload return self.getInstallDir() File "/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py", line 342, in getInstallDir installDir = self.Install() File "/home/dsu/Soft/PETSc/petsc-3.13.2/config/BuildSystem/config/package.py", line 1737, in Install raise RuntimeError('Error configuring '+self.PACKAGE+' with cmake') ================================================================================ Finishing configure run at Wed, 03 Jun 2020 10:32:45 -0700 ================================================================================