========================================== See documentation/faq.html and documentation/bugreporting.html for help with installation problems. Please send EVERYTHING printed out below when reporting problems. Please check the mailing list archives and consider subscribing. http://www.mcs.anl.gov/petsc/miscellaneous/mailing-lists.html ========================================== Starting make run on MarksMac-302.local at Mon, 30 Mar 2020 15:52:12 -0400 Machine characteristics: Darwin MarksMac-302.local 19.3.0 Darwin Kernel Version 19.3.0: Thu Jan 9 20:58:23 PST 2020; root:xnu-6153.81.5~1/RELEASE_X86_64 x86_64 ----------------------------------------- Using PETSc directory: /Users/markadams/Codes/petsc-master Using PETSc arch: arch-macosx-gnu-g ----------------------------------------- PETSC_VERSION_RELEASE 0 PETSC_VERSION_MAJOR 3 PETSC_VERSION_MINOR 13 PETSC_VERSION_SUBMINOR 0 PETSC_VERSION_PATCH 0 PETSC_VERSION_DATE "unknown" PETSC_VERSION_GIT "unknown" PETSC_VERSION_DATE_GIT "unknown" PETSC_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ PETSC_VERSION_ PETSC_VERSION_EQ PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ ----------------------------------------- Using configure Options: --with-mpi-dir=/usr/local/Cellar/mpich/3.3.2 COPTFLAGS="-g -O0" CXXOPTFLAGS="-g -O0" FOPTFLAGS="-g -O0" --download-metis=1 --download-parmetis=1 --download-fftw --download-p4est=1 --download-zlib --with-cxx-dialect=C++11 --download-triangle=1 --download-hdf5=1 -with-cuda=0 --with-x=1 --with-debugging=1 PETSC_ARCH=arch-macosx-gnu-g --with-64-bit-indices=0 PETSC_DIR=/Users/markadams/Codes/petsc-master Using configuration flags: #define INCLUDED_PETSCCONF_H #define IS_COLORING_MAX USHRT_MAX #define MPIU_COLORING_VALUE MPI_UNSIGNED_SHORT #define PETSC_ARCH "arch-macosx-gnu-g" #define PETSC_ATTRIBUTEALIGNED(size) __attribute((aligned(size))) #define PETSC_DEPRECATED_ENUM(why) __attribute((deprecated)) #define PETSC_DEPRECATED_FUNCTION(why) __attribute((deprecated)) #define PETSC_DEPRECATED_MACRO(why) _Pragma(why) #define PETSC_DEPRECATED_TYPEDEF(why) __attribute((deprecated)) #define PETSC_DIR "/Users/markadams/Codes/petsc-master" #define PETSC_DIR_SEPARATOR '/' #define PETSC_FUNCTION_NAME_C __func__ #define PETSC_FUNCTION_NAME_CXX __func__ #define PETSC_HAVE_ATOLL 1 #define PETSC_HAVE_ATTRIBUTEALIGNED 1 #define PETSC_HAVE_BUILTIN_EXPECT 1 #define PETSC_HAVE_CXX 1 #define PETSC_HAVE_DOUBLE_ALIGN_MALLOC 1 #define PETSC_HAVE_FFTW 1 #define PETSC_HAVE_FORTRAN 1 #define PETSC_HAVE_HDF5 1 #define PETSC_HAVE_METIS 1 #define PETSC_HAVE_P4EST 1 #define PETSC_HAVE_PARMETIS 1 #define PETSC_HAVE_PTHREAD 1 #define PETSC_HAVE_REGEX 1 #define PETSC_HAVE_SOWING 1 #define PETSC_HAVE_SO_REUSEADDR 1 #define PETSC_HAVE_TRIANGLE 1 #define PETSC_HAVE_X 1 #define PETSC_HAVE_XMMINTRIN_H 1 #define PETSC_LIB_DIR "/Users/markadams/Codes/petsc-master/arch-macosx-gnu-g/lib" #define PETSC_MPICC_SHOW "clang -Wl,-flat_namespace -Wl,-commons,use_dylibs -I/usr/local/Cellar/mpich/3.3.2/include -L/usr/local/Cellar/mpich/3.3.2/lib -lmpi -lpmpi" #define PETSC_PREFETCH_HINT_NTA _MM_HINT_NTA #define PETSC_PREFETCH_HINT_T0 _MM_HINT_T0 #define PETSC_PREFETCH_HINT_T1 _MM_HINT_T1 #define PETSC_PREFETCH_HINT_T2 _MM_HINT_T2 #define PETSC_Prefetch(a,b,c) _mm_prefetch((const char*)(a),(c)) #define PETSC_REPLACE_DIR_SEPARATOR '\\' #define PETSC_RTLD_DEFAULT 1 #define PETSC_SLSUFFIX "dylib" #define PETSC_UINTPTR_T uintptr_t #define PETSC_UNUSED __attribute((unused)) #define PETSC_USE_ISATTY 1 #define PETSC_USE_SINGLE_LIBRARY 1 #define PETSC_USE_SOCKET_VIEWER 1 #define PETSC_CLANGUAGE_C 1 #define PETSC_HAVE_ERF 1 #define PETSC_HAVE_FENV_H 1 #define PETSC_HAVE_LGAMMA 1 #define PETSC_HAVE_LOG2 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_CXX_INLINE inline #define PETSC_CXX_RESTRICT __restrict #define PETSC_C_INLINE inline #define PETSC_C_RESTRICT __restrict #define PETSC_FORTRAN_CHARLEN_T size_t #define PETSC_HAVE_C99 1 #define PETSC_HAVE_CXX_DIALECT_CXX11 1 #define PETSC_HAVE_FORTRAN_UNDERSCORE 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_IMMINTRIN_H 1 #define PETSC_HAVE_INTTYPES_H 1 #define PETSC_HAVE_MACHINE_ENDIAN_H 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_PTHREAD_H 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_ISINF 1 #define PETSC_HAVE_ISNAN 1 #define PETSC_HAVE_ISNORMAL 1 #define PETSC_USE_REAL_DOUBLE 1 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_HAVE_STRUCT_SIGACTION 1 #define PETSC_SIZEOF_ENUM 4 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG 8 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_USE_VISIBILITY_C 1 #define PETSC_USE_VISIBILITY_CXX 1 #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_BZERO 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_GETWD 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE_MMAP 1 #define PETSC_HAVE_NANOSLEEP 1 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_USLEEP 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_SIGNAL_CAST #define PETSC_FORTRAN_TYPE_INITIALIZE = -2 #define PETSC_HAVE_FORTRAN_FLUSH 1 #define PETSC_HAVE_FORTRAN_TYPE_STAR 1 #define PETSC_USING_F2003 1 #define PETSC_USING_F90FREEFORM 1 #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_USE_SHARED_LIBRARIES 1 #define PETSC_USE_DEBUGGER "lldb" #define PETSC_VERSION_BRANCH_GIT "knepley/feature-swarm-fortran" #define PETSC_VERSION_DATE_GIT "2020-03-30 13:53:15 -0400" #define PETSC_VERSION_GIT "v3.13-5-gc11fb2f17b" #define PETSC_BLASLAPACK_UNDERSCORE 1 #define PETSC_HAVE_MPICH_NUMVERSION 30302300 #define PETSC_HAVE_MPIEXEC_ENVIRONMENTAL_VARIABLE MPIR_CVAR_CH3 #define PETSC_HAVE_MPIIO 1 #define PETSC_HAVE_MPI_COMBINER_CONTIGUOUS 1 #define PETSC_HAVE_MPI_COMBINER_DUP 1 #define PETSC_HAVE_MPI_COMBINER_NAMED 1 #define PETSC_HAVE_MPI_C_DOUBLE_COMPLEX 1 #define PETSC_HAVE_MPI_EXSCAN 1 #define PETSC_HAVE_MPI_F90MODULE 1 #define PETSC_HAVE_MPI_FINALIZED 1 #define PETSC_HAVE_MPI_GET_ACCUMULATE 1 #define PETSC_HAVE_MPI_GET_LIBRARY_VERSION 1 #define PETSC_HAVE_MPI_IALLREDUCE 1 #define PETSC_HAVE_MPI_IBARRIER 1 #define PETSC_HAVE_MPI_INIT_THREAD 1 #define PETSC_HAVE_MPI_INT64_T 1 #define PETSC_HAVE_MPI_IN_PLACE 1 #define PETSC_HAVE_MPI_LONG_DOUBLE 1 #define PETSC_HAVE_MPI_NEIGHBORHOOD_COLLECTIVES 1 #define PETSC_HAVE_MPI_NONBLOCKING_COLLECTIVES 1 #define PETSC_HAVE_MPI_ONE_SIDED 1 #define PETSC_HAVE_MPI_PROCESS_SHARED_MEMORY 1 #define PETSC_HAVE_MPI_REDUCE_LOCAL 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER_BLOCK 1 #define PETSC_HAVE_MPI_RGET 1 #define PETSC_HAVE_MPI_TYPE_DUP 1 #define PETSC_HAVE_MPI_TYPE_GET_ENVELOPE 1 #define PETSC_HAVE_MPI_WIN_CREATE 1 #define PETSC_HAVE_SYS_SYSCTL_H 1 #define PETSC_Alignx(a,b) #define PETSC_IS_COLOR_VALUE_TYPE short #define PETSC_IS_COLOR_VALUE_TYPE_F integer2 #define PETSC_USE_AVX512_KERNELS 1 #define PETSC_USE_BACKWARD_LOOP 1 #define PETSC_USE_CTABLE 1 #define PETSC_USE_DEBUG 1 #define PETSC_USE_INFO 1 #define PETSC_USE_LOG 1 #define PETSC_MEMALIGN 16 #define PETSC_LEVEL1_DCACHE_LINESIZE 32 #define PETSC_HAVE_CLOSURE 1 #define PETSC__BSD_SOURCE 1 #define PETSC__DEFAULT_SOURCE 1 #define PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT 1 #define PETSC_HDF5_HAVE_PARALLEL 1 #define PETSC_HDF5_HAVE_ZLIB 1 #define PETSC_PYTHON_EXE "/System/Library/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python" #define PETSC_HAVE_VALGRIND 1 ----------------------------------------- Using C compile: /usr/local/Cellar/mpich/3.3.2/bin/mpicc -c -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 -I/Users/markadams/Codes/petsc-master/include -I/Users/markadams/Codes/petsc-master/arch-macosx-gnu-g/include -I/opt/X11/include -I/usr/local/Cellar/mpich/3.3.2/include mpicc -show: clang -Wl,-flat_namespace -Wl,-commons,use_dylibs -I/usr/local/Cellar/mpich/3.3.2/include -L/usr/local/Cellar/mpich/3.3.2/lib -lmpi -lpmpi C compiler version: Apple clang version 11.0.3 (clang-1103.0.32.29) Using C++ compile: /usr/local/Cellar/mpich/3.3.2/bin/mpicxx -c -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -fvisibility=hidden -g -O0 -std=c++11 -I/Users/markadams/Codes/petsc-master/include -I/Users/markadams/Codes/petsc-master/arch-macosx-gnu-g/include -I/opt/X11/include -I/usr/local/Cellar/mpich/3.3.2/include -std=c++11 mpicxx -show: clang++ -Wl,-flat_namespace -Wl,-commons,use_dylibs -I/usr/local/Cellar/mpich/3.3.2/include -L/usr/local/Cellar/mpich/3.3.2/lib -lmpicxx -lmpi -lpmpi C++ compiler version: Apple clang version 11.0.3 (clang-1103.0.32.29) Using Fortran compile: /usr/local/Cellar/mpich/3.3.2/bin/mpif90 -c -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 -I/Users/markadams/Codes/petsc-master/include -I/Users/markadams/Codes/petsc-master/arch-macosx-gnu-g/include -I/opt/X11/include -I/usr/local/Cellar/mpich/3.3.2/include mpif90 -show: gfortran -Wl,-flat_namespace -Wl,-commons,use_dylibs -I/usr/local/Cellar/mpich/3.3.2/include -I/usr/local/Cellar/mpich/3.3.2/include -L/usr/local/Cellar/mpich/3.3.2/lib -lmpifort -lmpi -lpmpi Fortran compiler version: GNU Fortran (Homebrew GCC 9.3.0) 9.3.0 ----------------------------------------- Using C/C++ linker: /usr/local/Cellar/mpich/3.3.2/bin/mpicc Using C/C++ flags: -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fno-stack-check -Qunused-arguments -fvisibility=hidden -g -O0 Using Fortran linker: /usr/local/Cellar/mpich/3.3.2/bin/mpif90 Using Fortran flags: -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-no_compact_unwind -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -g -O0 ----------------------------------------- Using system modules: Using mpi.h: # 1 "/usr/local/Cellar/mpich/3.3.2/include/mpi.h" 1 ----------------------------------------- Using libraries: -Wl,-rpath,/Users/markadams/Codes/petsc-master/arch-macosx-gnu-g/lib -L/Users/markadams/Codes/petsc-master/arch-macosx-gnu-g/lib -Wl,-rpath,/Users/markadams/Codes/petsc-master/arch-macosx-gnu-g/lib -L/Users/markadams/Codes/petsc-master/arch-macosx-gnu-g/lib -Wl,-rpath,/opt/X11/lib -L/opt/X11/lib -Wl,-rpath,/usr/local/Cellar/mpich/3.3.2/lib -L/usr/local/Cellar/mpich/3.3.2/lib -Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0 -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9/gcc/x86_64-apple-darwin19/9.3.0 -Wl,-rpath,/usr/local/Cellar/gcc/9.3.0/lib/gcc/9 -L/usr/local/Cellar/gcc/9.3.0/lib/gcc/9 -lpetsc -lfftw3_mpi -lfftw3 -lp4est -lsc -llapack -lblas -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -lparmetis -lmetis -ltriangle -lz -lX11 -lc++ -ldl -lmpifort -lmpi -lpmpi -lgfortran -lquadmath -lm -lc++ -ldl ------------------------------------------ Using mpiexec: /usr/local/Cellar/mpich/3.3.2/bin/mpiexec ------------------------------------------ Using MAKEFLAGS: -j7 -l12.0 --no-print-directory -- PETSC_ARCH=arch-macosx-gnu-g PETSC_DIR=/Users/markadams/Codes/petsc-master ========================================== FC arch-macosx-gnu-g/obj/sys/classes/bag/f2003-src/fsrc/bagenum.o Use "/usr/bin/make V=1" to see verbose compile lines, "/usr/bin/make V=0" to suppress. FC arch-macosx-gnu-g/obj/sys/objects/f2003-src/fsrc/optionenum.o FC arch-macosx-gnu-g/obj/mat/f90-mod/petscmatmod.o FC arch-macosx-gnu-g/obj/dm/f90-mod/petscdmswarmmod.o CC arch-macosx-gnu-g/obj/dm/field/impls/da/dmfieldda.o CC arch-macosx-gnu-g/obj/dm/field/interface/dmfield.o CC arch-macosx-gnu-g/obj/dm/field/interface/dmfieldregi.o /Users/markadams/Codes/petsc-master/src/dm/f90-mod/petscdmswarmmod.F90:2:12: 2 | use petscdmdef | 1 Fatal Error: Cannot open module file 'petscdmdef.mod' for reading at (1): No such file or directory compilation terminated. CC arch-macosx-gnu-g/obj/dm/field/interface/dlregisdmfield.o CC arch-macosx-gnu-g/obj/dm/field/interface/ftn-auto/dmfieldf.o CC arch-macosx-gnu-g/obj/dm/impls/product/product.o CC arch-macosx-gnu-g/obj/dm/impls/product/productutils.o CC arch-macosx-gnu-g/obj/dm/impls/shell/dmshell.o CC arch-macosx-gnu-g/obj/dm/impls/shell/ftn-auto/dmshellf.o CC arch-macosx-gnu-g/obj/dm/impls/shell/ftn-custom/zdmshellf.o CC arch-macosx-gnu-g/obj/dm/impls/network/networkcreate.o make[3]: *** [arch-macosx-gnu-g/obj/dm/f90-mod/petscdmswarmmod.o] Error 1 make[3]: *** Waiting for unfinished jobs.... make[2]: *** [libs] Error 2 **************************ERROR************************************* Error during compile, check arch-macosx-gnu-g/lib/petsc/conf/make.log Send it and arch-macosx-gnu-g/lib/petsc/conf/configure.log to petsc-maint@mcs.anl.gov ******************************************************************** Finishing make run at Mon, 30 Mar 2020 15:52:22 -0400