================================================================================ ================================================================================ Starting configure run at Tue, 03 Dec 2019 16:43:35 -0500 Configure Options: --configModules=PETSc.Configure --optionsModule=config.compilerOptions --with-fc=0 --COPTFLAGS="-g -O2 -fPIC" --CXXOPTFLAGS="-g -O2 -fPIC" --FOPTFLAGS="-g -O2 -fPIC" --CUDAOPTFLAGS="-O2 -g" --with-ssl=0 --with-batch=0 --with-cxx=mpicxx --with-mpiexec="jsrun -g1" --with-cuda=1 --with-cudac=nvcc --download-metis --download-parmetis --download-ctetgen --download-amgx --with-blaslapack-lib="-L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64 -lblas -llapack" --with-cc=mpicc --with-shared-libraries=1 --with-x=0 --with-64-bit-indices=1 --with-debugging=0 PETSC_ARCH=arch-summit-opt64-gnu-cuda Working directory: /autofs/nccs-svm1_home1/adams/petsc Machine platform: ('Linux', 'login1', '4.14.0-115.8.1.el7a.ppc64le', '#1 SMP Thu May 9 14:45:13 UTC 2019', 'ppc64le', 'ppc64le') Python version: 2.7.5 (default, Jun 11 2019, 16:23:49) [GCC 4.8.5 20150623 (Red Hat 4.8.5-36)] ================================================================================ ================================================================================ TEST configureExternalPackagesDir from config.framework(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/framework.py:911) TESTING: configureExternalPackagesDir from config.framework(config/BuildSystem/config/framework.py:911) ================================================================================ TEST configureDebuggers from config.utilities.debuggers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/utilities/debuggers.py:21) TESTING: configureDebuggers from config.utilities.debuggers(config/BuildSystem/config/utilities/debuggers.py:21) Find a default debugger and determine its arguments Executing: uname -s stdout: Linux Checking for program /sw/sources/lsf-tools/2.0/summit/bin/gdb...not found Checking for program /sw/summit/xalt/1.1.4/bin/gdb...not found Checking for program /sw/summit/forge/19.1.4/bin/gdb...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.0.1-20190611-cyaenjgora6now2nusxzkfli4mzjnudx/bin/gdb...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.15.2-xit2o3iepxvqbyku77lwcugufilztu7t/bin/gdb...not found Checking for program /sw/summit/gcc/6.4.0/bin/gdb...not found Checking for program /sw/summit/cuda/10.1.168/bin/gdb...not found Checking for program /usr/bin/gdb...found Defined make macro "GDB" to "/usr/bin/gdb" Defined "USE_DEBUGGER" to ""gdb"" Executing: uname -s stdout: Linux Defined make macro "DSYMUTIL" to "true" child config.utilities.debuggers 0.019064 ================================================================================ TEST configureDirectories from PETSc.options.petscdir(/autofs/nccs-svm1_home1/adams/petsc/config/PETSc/options/petscdir.py:23) TESTING: configureDirectories from PETSc.options.petscdir(config/PETSc/options/petscdir.py:23) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 0 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 12 #define PETSC_VERSION_SUBMINOR 2 #define PETSC_VERSION_PATCH 0 #define PETSC_VERSION_DATE "unknown" #define PETSC_VERSION_GIT "unknown" #define PETSC_VERSION_DATE_GIT "unknown" #define PETSC_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_ PETSC_VERSION_EQ #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ child PETSc.options.petscdir 0.005090 ================================================================================ TEST getDatafilespath from PETSc.options.dataFilesPath(/autofs/nccs-svm1_home1/adams/petsc/config/PETSc/options/dataFilesPath.py:29) TESTING: getDatafilespath from PETSc.options.dataFilesPath(config/PETSc/options/dataFilesPath.py:29) Checks what DATAFILESPATH should be child PETSc.options.dataFilesPath 0.001221 ================================================================================ TEST configureGit from config.sourceControl(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/sourceControl.py:24) TESTING: configureGit from config.sourceControl(config/BuildSystem/config/sourceControl.py:24) Find the Git executable Checking for program /sw/sources/lsf-tools/2.0/summit/bin/git...not found Checking for program /sw/summit/xalt/1.1.4/bin/git...not found Checking for program /sw/summit/forge/19.1.4/bin/git...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.0.1-20190611-cyaenjgora6now2nusxzkfli4mzjnudx/bin/git...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.15.2-xit2o3iepxvqbyku77lwcugufilztu7t/bin/git...not found Checking for program /sw/summit/gcc/6.4.0/bin/git...not found Checking for program /sw/summit/cuda/10.1.168/bin/git...not found Checking for program /usr/bin/git...found Defined make macro "GIT" to "git" Executing: git --version stdout: git version 1.8.3.1 child config.sourceControl 0.008085 ================================================================================ TEST configureInstallationMethod from PETSc.options.petscclone(/autofs/nccs-svm1_home1/adams/petsc/config/PETSc/options/petscclone.py:20) TESTING: configureInstallationMethod from PETSc.options.petscclone(config/PETSc/options/petscclone.py:20) lib/petsc/bin/maint exists. This appears to be a repository clone .git directory exists Executing: ['git', 'describe', '--match=v*'] stdout: v3.12.2-336-g3f4ce0d Executing: ['git', 'log', '-1', '--pretty=format:%H'] stdout: 3f4ce0d3ab21d5190038f49f143aafadfb793d82 Executing: ['git', 'log', '-1', '--pretty=format:%ci'] stdout: 2019-12-03 10:28:45 -0500 Executing: ['git', 'branch'] stdout: Fande-Kong/bug_weight_partition_parmetis barry/2019-08-17/hypre-cuda barry/2019-09-01/robustify-version-check * barry/2019-12-01/mark/pc-amgx-feature mark/feature-cuda-streams mark/feature-sf-on-gpu mark/fix-cuda-with-gamg-pintocpu mark/gamg-eigest-sa-cheby mark/gamg-fix-viennacl-rebased mark/gamg-fix-viennacl-rebased-v2 mark/pc-amgx-feature master stefanozampini/hypre-cuda-rebased Defined "VERSION_GIT" to ""v3.12.2-336-g3f4ce0d"" Defined "VERSION_DATE_GIT" to ""2019-12-03 10:28:45 -0500"" Defined "VERSION_BRANCH_GIT" to ""barry/2019-12-01/mark/pc-amgx-feature"" child PETSc.options.petscclone 1.357005 ================================================================================ TEST setNativeArchitecture from PETSc.options.arch(/autofs/nccs-svm1_home1/adams/petsc/config/PETSc/options/arch.py:31) TESTING: setNativeArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:31) ================================================================================ TEST configureArchitecture from PETSc.options.arch(/autofs/nccs-svm1_home1/adams/petsc/config/PETSc/options/arch.py:43) TESTING: configureArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:43) Checks PETSC_ARCH and sets if not set No previous hashfile found Setting hashfile: arch-summit-opt64-gnu-cuda/lib/petsc/conf/configure-hash Deleting configure hash file: arch-summit-opt64-gnu-cuda/lib/petsc/conf/configure-hash Unable to delete configure hash file: arch-summit-opt64-gnu-cuda/lib/petsc/conf/configure-hash child PETSc.options.arch 0.190982 ================================================================================ TEST setInstallDir from PETSc.options.installDir(/autofs/nccs-svm1_home1/adams/petsc/config/PETSc/options/installDir.py:35) TESTING: setInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:35) setup installDir to either prefix or if that is not set to PETSC_DIR/PETSC_ARCH Defined make macro "PREFIXDIR" to "/ccs/home/adams/petsc/arch-summit-opt64-gnu-cuda" ================================================================================ TEST saveReconfigure from PETSc.options.installDir(/autofs/nccs-svm1_home1/adams/petsc/config/PETSc/options/installDir.py:80) TESTING: saveReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:80) ================================================================================ TEST cleanConfDir from PETSc.options.installDir(/autofs/nccs-svm1_home1/adams/petsc/config/PETSc/options/installDir.py:73) TESTING: cleanConfDir from PETSc.options.installDir(config/PETSc/options/installDir.py:73) ================================================================================ TEST configureInstallDir from PETSc.options.installDir(/autofs/nccs-svm1_home1/adams/petsc/config/PETSc/options/installDir.py:57) TESTING: configureInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:57) Makes installDir subdirectories if it does not exist for both prefix install location and PETSc work install location Changed persistence directory to /ccs/home/adams/petsc/arch-summit-opt64-gnu-cuda/lib/petsc/conf ================================================================================ TEST restoreReconfigure from PETSc.options.installDir(/autofs/nccs-svm1_home1/adams/petsc/config/PETSc/options/installDir.py:93) TESTING: restoreReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:93) child PETSc.options.installDir 0.006414 ================================================================================ TEST setExternalPackagesDir from PETSc.options.externalpackagesdir(/autofs/nccs-svm1_home1/adams/petsc/config/PETSc/options/externalpackagesdir.py:15) TESTING: setExternalPackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:15) ================================================================================ TEST cleanExternalpackagesDir from PETSc.options.externalpackagesdir(/autofs/nccs-svm1_home1/adams/petsc/config/PETSc/options/externalpackagesdir.py:22) TESTING: cleanExternalpackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:22) child PETSc.options.externalpackagesdir 0.000289 ================================================================================ TEST configureCLanguage from PETSc.options.languages(/autofs/nccs-svm1_home1/adams/petsc/config/PETSc/options/languages.py:27) TESTING: configureCLanguage from PETSc.options.languages(config/PETSc/options/languages.py:27) Choose whether to compile the PETSc library using a C or C++ compiler C language is C Defined "CLANGUAGE_C" to "1" child PETSc.options.languages 0.000772 ================================================================================ TEST printEnvVariables from config.setCompilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/setCompilers.py:1724) TESTING: printEnvVariables from config.setCompilers(config/BuildSystem/config/setCompilers.py:1724) **** printenv **** LMOD_FAMILY_MPI=spectrum-mpi XL_LINKER=/sw/summit/xalt/1.1.4/bin/ld __LMOD_REF_COUNT_CMAKE_PREFIX_PATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm:1;/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.0.1-20190611-cyaenjgora6now2nusxzkfli4mzjnudx:1;/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.15.2-xit2o3iepxvqbyku77lwcugufilztu7t:1;/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-csygoqyym3m3ysoaperhxlhoiluvpa2u:1 LMOD_SETTARG_FULL_SUPPORT=no PAMI_IBV_ADAPTER_AFFINITY=1 CUDA_DIR=/sw/summit/cuda/10.1.168 SHELL=/bin/bash LMOD_MPI_VERSION=10.3.0.1-20190611-cyaenjg HISTSIZE=100 MANPATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.0.1-20190611-cyaenjgora6now2nusxzkfli4mzjnudx/share/man:/sw/summit/gcc/6.4.0/share/man:/sw/summit/cuda/10.1.168/doc/man:/sw/sources/hpss/man:/sw/summit/lmod/7.7.10/rhel7.3_gnu4.8.5/lmod/lmod/share/man:/opt/ibm/spectrumcomputing/lsf/10.1/man:: XDG_RUNTIME_DIR=/run/user/62983 PYTHONPATH=/sw/summit/xalt/1.1.4/site:/sw/summit/xalt/1.1.4/libexec __LMOD_REF_COUNT_LIBRARY_PATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64:1;/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.0.1-20190611-cyaenjgora6now2nusxzkfli4mzjnudx/lib:1;/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-csygoqyym3m3ysoaperhxlhoiluvpa2u/lib:1 LMOD_FAMILY_COMPILER_VERSION=6.4.0 __Init_Default_Modules=1 XDG_SESSION_ID=15659 LMOD_FAMILY_COMPILER=gcc OLCF_LMOD_ROOT=/sw/summit/lmod/7.7.10/rhel7.3_gnu4.8.5 OMPI_FC=gfortran HOSTNAME=login1 JSM_JSRUN_NO_WARN_TOPOLOGY=1 DDT_HOME=/sw/summit/forge/19.1.4 _ModuleTable002_=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 PETSC_ARCH=arch-summit-opt64-gnu-cuda MAIL=/var/spool/mail/adams LS_COLORS=rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;05;37;41:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.axv=01;35:*.anx=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.axa=01;36:*.oga=01;36:*.spx=01;36:*.xspf=01;36: OMPI_MCA_io=romio321 __LMOD_REF_COUNT_MANPATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.0.1-20190611-cyaenjgora6now2nusxzkfli4mzjnudx/share/man:1;/sw/summit/gcc/6.4.0/share/man:1;/sw/summit/cuda/10.1.168/doc/man:1;/sw/sources/hpss/man:1;/sw/summit/lmod/7.7.10/rhel7.3_gnu4.8.5/lmod/lmod/share/man:1;/opt/ibm/spectrumcomputing/lsf/10.1/man:1 OLCF_NETLIB_LAPACK_ROOT=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm OLCF_CUDA_ROOT=/sw/summit/cuda/10.1.168 LESSOPEN=||/usr/bin/lesspipe.sh %s LSF_BINDIR=/opt/ibm/spectrumcomputing/lsf/10.1/linux3.10-glibc2.17-ppc64le-csm/bin _ModuleTable008_=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 CVS_RSH=ssh USER=adams LSF_ENVDIR=/opt/ibm/spectrumcomputing/lsf/conf PAMI_ENABLE_STRIPING=0 PS1=\A\[\033[;1m\]\[\033[35m\]$(ret=$?; [ $ret -ne 0 ] && echo -n " $ret")\[\033[;0m\] \[\033[34m\]$(__git_ps1 '%s') \[\033[32m\]\w\[\033[0m\]\$ OLCF_SPECTRUM_MPI_ROOT=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.0.1-20190611-cyaenjgora6now2nusxzkfli4mzjnudx __LMOD_REF_COUNT_LD_LIBRARY_PATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm/lib64:1;/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.0.1-20190611-cyaenjgora6now2nusxzkfli4mzjnudx/lib:1;/sw/summit/gcc/6.4.0/lib64:1;/sw/summit/cuda/10.1.168/lib64:1;/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-csygoqyym3m3ysoaperhxlhoiluvpa2u/lib:1;/opt/ibm/spectrumcomputing/lsf/10.1/linux3.10-glibc2.17-ppc64le-csm/lib:1 SHLVL=1 __LMOD_REF_COUNT_ACLOCAL_PATH=/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.15.2-xit2o3iepxvqbyku77lwcugufilztu7t/share/aclocal:1 DISPLAY=localhost:25.0 PETSC_DIR=/ccs/home/adams/petsc 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PATH=/sw/sources/lsf-tools/2.0/summit/bin:/sw/summit/xalt/1.1.4/bin:/sw/summit/forge/19.1.4/bin:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.0.1-20190611-cyaenjgora6now2nusxzkfli4mzjnudx/bin:/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.15.2-xit2o3iepxvqbyku77lwcugufilztu7t/bin:/sw/summit/gcc/6.4.0/bin:/sw/summit/cuda/10.1.168/bin:/usr/bin:/usr/sbin:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-csygoqyym3m3ysoaperhxlhoiluvpa2u/bin:/sw/sources/hpss/bin:/opt/ibm/spectrumcomputing/lsf/10.1/linux3.10-glibc2.17-ppc64le-csm/etc:/opt/ibm/spectrumcomputing/lsf/10.1/linux3.10-glibc2.17-ppc64le-csm/bin:/opt/ibm/csm/bin:/usr/local/bin:/usr/local/sbin:/opt/ibm/flightlog/bin:/opt/ibutils/bin:/opt/ibm/spectrum_mpi/jsm_pmix/bin:/opt/puppetlabs/bin:/usr/lpp/mmfs/bin TERM=xterm CMAKE_PREFIX_PATH=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/netlib-lapack-3.8.0-wcabdyqhdi5rooxbkqa6x5d7hxyxwdkm:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.0.1-20190611-cyaenjgora6now2nusxzkfli4mzjnudx:/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.15.2-xit2o3iepxvqbyku77lwcugufilztu7t:/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-csygoqyym3m3ysoaperhxlhoiluvpa2u OPAL_LIBDIR=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.0.1-20190611-cyaenjgora6now2nusxzkfli4mzjnudx/lib MEMBERWORK=/gpfs/alpine/scratch/adams LSF_LIBDIR=/opt/ibm/spectrumcomputing/lsf/10.1/linux3.10-glibc2.17-ppc64le-csm/lib OLCF_CMAKE_ROOT=/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.15.2-xit2o3iepxvqbyku77lwcugufilztu7t _ModuleTable003_=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 XALT_OLCF=1 __LMOD_Priority_PATH=/sw/sources/lsf-tools/2.0/summit/bin:-9999;/sw/summit/xalt/1.1.4/bin:-9999 OMPI_DIR=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.0.1-20190611-cyaenjgora6now2nusxzkfli4mzjnudx BASH_FUNC_ml()=() { eval $($LMOD_DIR/ml_cmd "$@") } PAMI_IBV_QP_SERVICE_LEVEL=8 MPI_ROOT=/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.0.1-20190611-cyaenjgora6now2nusxzkfli4mzjnudx WORLDWORK=/gpfs/alpine/world-shared LMOD_sys=Linux LOADEDMODULES=hsi/5.0.2.p5:xalt/1.1.4:lsf-tools/2.0:darshan-runtime/3.1.7:DefApps:cuda/10.1.168:gcc/6.4.0:cmake/3.15.2:spectrum-mpi/10.3.0.1-20190611:netlib-lapack/3.8.0:forge/19.1.4 HISTCONTROL=ignoredups PWD=/ccs/home/adams/petsc _ModuleTable004_=WyJmbiJdPSIvc3cvc3VtbWl0L21vZHVsZWZpbGVzL3NpdGUvbGludXgtcmhlbDctcHBjNjRsZS9Db3JlL2djYy82LjQuMC5sdWEiLFsiZnVsbE5hbWUiXT0iZ2NjLzYuNC4wIixbImxvYWRPcmRlciJdPTcscHJvcFQ9e30sWyJzdGFja0RlcHRoIl09MCxbInN0YXR1cyJdPSJhY3RpdmUiLFsidXNlck5hbWUiXT0iZ2NjIix9LGhzaT17WyJmbiJdPSIvc3cvc3VtbWl0L21vZHVsZWZpbGVzL3NpdGUvbGludXgtcmhlbDctcHBjNjRsZS9Db3JlL2hzaS81LjAuMi5wNS5sdWEiLFsiZnVsbE5hbWUiXT0iaHNpLzUuMC4yLnA1IixbImxvYWRPcmRlciJdPTEscHJvcFQ9e30sWyJzdGFja0RlcHRoIl09MSxbInN0YXR1cyJdPSJhY3RpdmUiLFsidXNlck5hbWUiXT0iaHNpIix9LFsibHNm BINARY_TYPE_HPC= OLCF_HSI_ROOT=/sw/sources/hpss ================================================================================ TEST resetEnvCompilers from config.setCompilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/setCompilers.py:1731) TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1731) ================================================================================ TEST checkEnvCompilers from config.setCompilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/setCompilers.py:1761) TESTING: checkEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1761) ================================================================================ TEST checkMPICompilerOverride from config.setCompilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/setCompilers.py:1694) TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:1694) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ================================================================================ TEST requireMpiLdPath from config.setCompilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/setCompilers.py:1715) TESTING: requireMpiLdPath from config.setCompilers(config/BuildSystem/config/setCompilers.py:1715) OpenMPI wrappers require LD_LIBRARY_PATH set ================================================================================ TEST checkInitialFlags from config.setCompilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/setCompilers.py:459) TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:459) Initialize the compiler and linker flags Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Initialized CPPFLAGS to Initialized FPPFLAGS to Initialized CUDAPPFLAGS to -Wno-deprecated-gpu-targets Initialized CXXPPFLAGS to Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ================================================================================ TEST checkCCompiler from config.setCompilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/setCompilers.py:629) TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:629) Locate a functional C compiler Checking for program /sw/sources/lsf-tools/2.0/summit/bin/mpicc...not found Checking for program /sw/summit/xalt/1.1.4/bin/mpicc...not found Checking for program /sw/summit/forge/19.1.4/bin/mpicc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.0.1-20190611-cyaenjgora6now2nusxzkfli4mzjnudx/bin/mpicc...found Defined make macro "CC" to "mpicc" All intermediate test results are stored in /tmp/petsc-LDoAyU All intermediate test results are stored in /tmp/petsc-LDoAyU/config.setCompilers Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.setCompilers/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers /tmp/petsc-LDoAyU/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.setCompilers/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers /tmp/petsc-LDoAyU/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.setCompilers/conftest /tmp/petsc-LDoAyU/config.setCompilers/conftest.o Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.setCompilers/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers /tmp/petsc-LDoAyU/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.setCompilers/conftest /tmp/petsc-LDoAyU/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm /usr/bin/sha1sum: /tmp/petsc-LDoAyU/config.setCompilers/conftest: No such file or directory collect2: error: ld returned 1 exit status Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.setCompilers/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers /tmp/petsc-LDoAyU/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.setCompilers/conftest /tmp/petsc-LDoAyU/config.setCompilers/conftest.o Testing executable /tmp/petsc-LDoAyU/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-LDoAyU/config.setCompilers/conftest Executing: /tmp/petsc-LDoAyU/config.setCompilers/conftest Executing: mpicc --version stdout: gcc (GCC) 6.4.0 Copyright (C) 2017 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. ================================================================================ TEST checkCPreprocessor from config.setCompilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/setCompilers.py:666) TESTING: checkCPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:666) Locate a functional C preprocessor Checking for program /sw/sources/lsf-tools/2.0/summit/bin/mpicc...not found Checking for program /sw/summit/xalt/1.1.4/bin/mpicc...not found Checking for program /sw/summit/forge/19.1.4/bin/mpicc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.0.1-20190611-cyaenjgora6now2nusxzkfli4mzjnudx/bin/mpicc...found Defined make macro "CPP" to "mpicc -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers /tmp/petsc-LDoAyU/config.setCompilers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: ================================================================================ TEST checkCUDACompiler from config.setCompilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/setCompilers.py:704) TESTING: checkCUDACompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:704) Locate a functional CUDA compiler Checking for program /sw/sources/lsf-tools/2.0/summit/bin/nvcc...not found Checking for program /sw/summit/xalt/1.1.4/bin/nvcc...not found Checking for program /sw/summit/forge/19.1.4/bin/nvcc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.0.1-20190611-cyaenjgora6now2nusxzkfli4mzjnudx/bin/nvcc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.15.2-xit2o3iepxvqbyku77lwcugufilztu7t/bin/nvcc...not found Checking for program /sw/summit/gcc/6.4.0/bin/nvcc...not found Checking for program /sw/summit/cuda/10.1.168/bin/nvcc...found Defined make macro "CUDAC" to "nvcc" Executing: nvcc -c -o /tmp/petsc-LDoAyU/config.setCompilers/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -Wno-deprecated-gpu-targets /tmp/petsc-LDoAyU/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: nvcc --version stdout: nvcc: NVIDIA (R) Cuda compiler driver Copyright (c) 2005-2019 NVIDIA Corporation Built on Wed_Apr_24_19:12:21_PDT_2019 Cuda compilation tools, release 10.1, V10.1.168 ================================================================================ TEST checkCUDAPreprocessor from config.setCompilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/setCompilers.py:744) TESTING: checkCUDAPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:744) Locate a functional CUDA preprocessor Checking for program /sw/sources/lsf-tools/2.0/summit/bin/nvcc...not found Checking for program /sw/summit/xalt/1.1.4/bin/nvcc...not found Checking for program /sw/summit/forge/19.1.4/bin/nvcc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.0.1-20190611-cyaenjgora6now2nusxzkfli4mzjnudx/bin/nvcc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.15.2-xit2o3iepxvqbyku77lwcugufilztu7t/bin/nvcc...not found Checking for program /sw/summit/gcc/6.4.0/bin/nvcc...not found Checking for program /sw/summit/cuda/10.1.168/bin/nvcc...found Defined make macro "CUDAPP" to "nvcc -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include __global__ void testFunction() {return;}; Executing: nvcc -E -I/tmp/petsc-LDoAyU/config.setCompilers -Wno-deprecated-gpu-targets /tmp/petsc-LDoAyU/config.setCompilers/conftest.cu Preprocess stderr before filtering:: Preprocess stderr after filtering:: ================================================================================ TEST checkCxxCompiler from config.setCompilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/setCompilers.py:844) TESTING: checkCxxCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:844) Locate a functional Cxx compiler Checking for program /sw/sources/lsf-tools/2.0/summit/bin/mpicxx...not found Checking for program /sw/summit/xalt/1.1.4/bin/mpicxx...not found Checking for program /sw/summit/forge/19.1.4/bin/mpicxx...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.0.1-20190611-cyaenjgora6now2nusxzkfli4mzjnudx/bin/mpicxx...found Defined make macro "CXX" to "mpicxx" Executing: mpicxx -c -o /tmp/petsc-LDoAyU/config.setCompilers/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers /tmp/petsc-LDoAyU/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicxx -c -o /tmp/petsc-LDoAyU/config.setCompilers/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers /tmp/petsc-LDoAyU/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicxx -o /tmp/petsc-LDoAyU/config.setCompilers/conftest /tmp/petsc-LDoAyU/config.setCompilers/conftest.o Executing: mpicxx -c -o /tmp/petsc-LDoAyU/config.setCompilers/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers /tmp/petsc-LDoAyU/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicxx -o /tmp/petsc-LDoAyU/config.setCompilers/conftest /tmp/petsc-LDoAyU/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm /usr/bin/sha1sum: /tmp/petsc-LDoAyU/config.setCompilers/conftest: No such file or directory collect2: error: ld returned 1 exit status Executing: mpicxx -c -o /tmp/petsc-LDoAyU/config.setCompilers/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers /tmp/petsc-LDoAyU/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicxx -o /tmp/petsc-LDoAyU/config.setCompilers/conftest /tmp/petsc-LDoAyU/config.setCompilers/conftest.o Testing executable /tmp/petsc-LDoAyU/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-LDoAyU/config.setCompilers/conftest Executing: /tmp/petsc-LDoAyU/config.setCompilers/conftest Executing: mpicxx --version stdout: g++ (GCC) 6.4.0 Copyright (C) 2017 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. ================================================================================ TEST checkCxxPreprocessor from config.setCompilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/setCompilers.py:886) TESTING: checkCxxPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:886) Locate a functional Cxx preprocessor Checking for program /sw/sources/lsf-tools/2.0/summit/bin/mpicxx...not found Checking for program /sw/summit/xalt/1.1.4/bin/mpicxx...not found Checking for program /sw/summit/forge/19.1.4/bin/mpicxx...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.0.1-20190611-cyaenjgora6now2nusxzkfli4mzjnudx/bin/mpicxx...found Defined make macro "CXXPP" to "mpicxx -E" Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicxx -E -I/tmp/petsc-LDoAyU/config.setCompilers /tmp/petsc-LDoAyU/config.setCompilers/conftest.cc Preprocess stderr before filtering:: Preprocess stderr after filtering:: ================================================================================ TEST checkFortranCompiler from config.setCompilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/setCompilers.py:989) TESTING: checkFortranCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:989) Locate a functional Fortran compiler ================================================================================ TEST checkLargeFileIO from config.setCompilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/setCompilers.py:1180) TESTING: checkLargeFileIO from config.setCompilers(config/BuildSystem/config/setCompilers.py:1180) ================================================================================ TEST checkArchiver from config.setCompilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/setCompilers.py:1279) TESTING: checkArchiver from config.setCompilers(config/BuildSystem/config/setCompilers.py:1279) Check that the archiver exists and can make a library usable by the compiler Executing: ar -V stdout: GNU ar version 2.27-34.base.el7 Copyright (C) 2016 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar version 2.27-34.base.el7 Copyright (C) 2016 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.setCompilers/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers /tmp/petsc-LDoAyU/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /sw/sources/lsf-tools/2.0/summit/bin/ar...not found Checking for program /sw/summit/xalt/1.1.4/bin/ar...not found Checking for program /sw/summit/forge/19.1.4/bin/ar...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.0.1-20190611-cyaenjgora6now2nusxzkfli4mzjnudx/bin/ar...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.15.2-xit2o3iepxvqbyku77lwcugufilztu7t/bin/ar...not found Checking for program /sw/summit/gcc/6.4.0/bin/ar...not found Checking for program /sw/summit/cuda/10.1.168/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /sw/sources/lsf-tools/2.0/summit/bin/ranlib...not found Checking for program /sw/summit/xalt/1.1.4/bin/ranlib...not found Checking for program /sw/summit/forge/19.1.4/bin/ranlib...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.0.1-20190611-cyaenjgora6now2nusxzkfli4mzjnudx/bin/ranlib...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.15.2-xit2o3iepxvqbyku77lwcugufilztu7t/bin/ranlib...not found Checking for program /sw/summit/gcc/6.4.0/bin/ranlib...not found Checking for program /sw/summit/cuda/10.1.168/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" Executing: /usr/bin/ar cr /tmp/petsc-LDoAyU/config.setCompilers/libconf1.a /tmp/petsc-LDoAyU/config.setCompilers/conf1.o Executing: /usr/bin/ranlib -c /tmp/petsc-LDoAyU/config.setCompilers/libconf1.a Possible ERROR while running ranlib: stderr: /usr/bin/ranlib: invalid option -- 'c' Ranlib is not functional with your archiver. Try --with-ranlib=true if ranlib is unnecessary. Executing: ar -V stdout: GNU ar version 2.27-34.base.el7 Copyright (C) 2016 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar version 2.27-34.base.el7 Copyright (C) 2016 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.setCompilers/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers /tmp/petsc-LDoAyU/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /sw/sources/lsf-tools/2.0/summit/bin/ar...not found Checking for program /sw/summit/xalt/1.1.4/bin/ar...not found Checking for program /sw/summit/forge/19.1.4/bin/ar...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.0.1-20190611-cyaenjgora6now2nusxzkfli4mzjnudx/bin/ar...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.15.2-xit2o3iepxvqbyku77lwcugufilztu7t/bin/ar...not found Checking for program /sw/summit/gcc/6.4.0/bin/ar...not found Checking for program /sw/summit/cuda/10.1.168/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /sw/sources/lsf-tools/2.0/summit/bin/ranlib...not found Checking for program /sw/summit/xalt/1.1.4/bin/ranlib...not found Checking for program /sw/summit/forge/19.1.4/bin/ranlib...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.0.1-20190611-cyaenjgora6now2nusxzkfli4mzjnudx/bin/ranlib...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.15.2-xit2o3iepxvqbyku77lwcugufilztu7t/bin/ranlib...not found Checking for program /sw/summit/gcc/6.4.0/bin/ranlib...not found Checking for program /sw/summit/cuda/10.1.168/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib" Executing: /usr/bin/ar cr /tmp/petsc-LDoAyU/config.setCompilers/libconf1.a /tmp/petsc-LDoAyU/config.setCompilers/conf1.o Executing: /usr/bin/ranlib /tmp/petsc-LDoAyU/config.setCompilers/libconf1.a Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.setCompilers/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers /tmp/petsc-LDoAyU/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.setCompilers/conftest /tmp/petsc-LDoAyU/config.setCompilers/conftest.o -L/tmp/petsc-LDoAyU/config.setCompilers -lconf1 Defined make macro "AR_FLAGS" to "cr" Defined make macro "AR_LIB_SUFFIX" to "a" ================================================================================ TEST checkSharedLinker from config.setCompilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/setCompilers.py:1393) TESTING: checkSharedLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1393) Check that the linker can produce shared libraries Executing: uname -s stdout: Linux Checking shared linker mpicc using flags ['-shared'] Checking for program /sw/sources/lsf-tools/2.0/summit/bin/mpicc...not found Checking for program /sw/summit/xalt/1.1.4/bin/mpicc...not found Checking for program /sw/summit/forge/19.1.4/bin/mpicc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.0.1-20190611-cyaenjgora6now2nusxzkfli4mzjnudx/bin/mpicc...found Defined make macro "LD_SHARED" to "mpicc" Trying C compiler flag Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.setCompilers/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers /tmp/petsc-LDoAyU/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.setCompilers/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers /tmp/petsc-LDoAyU/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.setCompilers/conftest -shared /tmp/petsc-LDoAyU/config.setCompilers/conftest.o Valid C linker flag -shared Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.setCompilers/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers /tmp/petsc-LDoAyU/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Executing: mpicc -o /tmp/petsc-LDoAyU/config.setCompilers/libconftest.so -shared /tmp/petsc-LDoAyU/config.setCompilers/conftest.o Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.setCompilers/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers /tmp/petsc-LDoAyU/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(void); int main() { int ret = foo(); if (ret) {} ; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.setCompilers/conftest /tmp/petsc-LDoAyU/config.setCompilers/conftest.o -L/tmp/petsc-LDoAyU/config.setCompilers -lconftest Using shared linker mpicc with flags ['-shared'] and library extension so Executing: uname -s stdout: Linux Executing: uname -s stdout: Linux ================================================================================ TEST checkPIC from config.setCompilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/setCompilers.py:1127) TESTING: checkPIC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1127) Determine the PIC option for each compiler Trying Cxx for PIC code without any compiler flag Executing: mpicxx -c -o /tmp/petsc-LDoAyU/config.setCompilers/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers /tmp/petsc-LDoAyU/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicxx -c -o /tmp/petsc-LDoAyU/config.setCompilers/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers /tmp/petsc-LDoAyU/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Executing: mpicc -o /tmp/petsc-LDoAyU/config.setCompilers/libconftest.so -shared /tmp/petsc-LDoAyU/config.setCompilers/conftest.o Accepted Cxx PIC code without compiler flag Trying CUDA for PIC code without any compiler flag Executing: nvcc -c -o /tmp/petsc-LDoAyU/config.setCompilers/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -Wno-deprecated-gpu-targets /tmp/petsc-LDoAyU/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: nvcc -c -o /tmp/petsc-LDoAyU/config.setCompilers/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -Wno-deprecated-gpu-targets /tmp/petsc-LDoAyU/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Executing: mpicc -o /tmp/petsc-LDoAyU/config.setCompilers/libconftest.so -shared /tmp/petsc-LDoAyU/config.setCompilers/conftest.o Accepted CUDA PIC code without compiler flag ================================================================================ TEST checkSharedLinkerPaths from config.setCompilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/setCompilers.py:1505) TESTING: checkSharedLinkerPaths from config.setCompilers(config/BuildSystem/config/setCompilers.py:1505) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Executing: uname -s stdout: Linux Executing: mpicc -V Trying C linker flag -Wl,-rpath, Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.setCompilers/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers /tmp/petsc-LDoAyU/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.setCompilers/conftest -Wl,-rpath,/autofs/nccs-svm1_home1/adams/petsc /tmp/petsc-LDoAyU/config.setCompilers/conftest.o Valid C linker flag -Wl,-rpath,/autofs/nccs-svm1_home1/adams/petsc Executing: uname -s stdout: Linux Executing: mpicc -V Trying Cxx linker flag -Wl,-rpath, Executing: mpicxx -c -o /tmp/petsc-LDoAyU/config.setCompilers/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers /tmp/petsc-LDoAyU/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicxx -o /tmp/petsc-LDoAyU/config.setCompilers/conftest -Wl,-rpath,/autofs/nccs-svm1_home1/adams/petsc /tmp/petsc-LDoAyU/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-rpath,/autofs/nccs-svm1_home1/adams/petsc Executing: uname -s stdout: Linux Executing: mpicc -V Trying CUDA linker flag -Wl,-rpath, Executing: nvcc -c -o /tmp/petsc-LDoAyU/config.setCompilers/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -Wno-deprecated-gpu-targets /tmp/petsc-LDoAyU/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: nvcc -o /tmp/petsc-LDoAyU/config.setCompilers/conftest /tmp/petsc-LDoAyU/config.setCompilers/conftest.o Valid CUDA linker flag -Wl,-rpath,/autofs/nccs-svm1_home1/adams/petsc ================================================================================ TEST checkLibC from config.setCompilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/setCompilers.py:1540) TESTING: checkLibC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1540) Test whether we need to explicitly include libc in shared linking - Mac OSX requires an explicit reference to libc for shared linking Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.setCompilers/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers /tmp/petsc-LDoAyU/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {void *chunk = malloc(31); free(chunk); return 0;} Executing: mpicc -o /tmp/petsc-LDoAyU/config.setCompilers/libconftest.so -shared /tmp/petsc-LDoAyU/config.setCompilers/conftest.o Shared linking does not require an explicit libc reference ================================================================================ TEST checkDynamicLinker from config.setCompilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/setCompilers.py:1586) TESTING: checkDynamicLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1586) Check that the linker can dynamicaly load shared libraries Checking for header: dlfcn.h All intermediate test results are stored in /tmp/petsc-LDoAyU/config.headers Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_DLFCN_H" to "1" Checking for functions [dlopen dlsym dlclose] in library ['dl'] [] All intermediate test results are stored in /tmp/petsc-LDoAyU/config.libraries Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.libraries/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.libraries /tmp/petsc-LDoAyU/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } char dlsym(); static void _check_dlsym() { dlsym(); } char dlclose(); static void _check_dlclose() { dlclose(); } int main() { _check_dlopen(); _check_dlsym(); _check_dlclose();; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.libraries/conftest /tmp/petsc-LDoAyU/config.libraries/conftest.o -ldl Defined "HAVE_LIBDL" to "1" Adding ['dl'] to LIBS Executing: uname -s stdout: Linux Checking dynamic linker mpicc using flags ['-shared'] Checking for program /sw/sources/lsf-tools/2.0/summit/bin/mpicc...not found Checking for program /sw/summit/xalt/1.1.4/bin/mpicc...not found Checking for program /sw/summit/forge/19.1.4/bin/mpicc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.0.1-20190611-cyaenjgora6now2nusxzkfli4mzjnudx/bin/mpicc...found Defined make macro "DYNAMICLINKER" to "mpicc" Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.setCompilers/conftest.o -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.setCompilers /tmp/petsc-LDoAyU/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.setCompilers/conftest -shared /tmp/petsc-LDoAyU/config.setCompilers/conftest.o -ldl Valid C linker flag -shared Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.setCompilers/conftest.o -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.setCompilers /tmp/petsc-LDoAyU/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("test");return 0;} Executing: mpicc -o /tmp/petsc-LDoAyU/config.setCompilers/libconftest.so -shared /tmp/petsc-LDoAyU/config.setCompilers/conftest.o -ldl Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.setCompilers/conftest.o -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.setCompilers /tmp/petsc-LDoAyU/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { void *handle = dlopen("/tmp/petsc-LDoAyU/config.setCompilers/libconftest.so", 0); int (*foo)(void) = (int (*)(void)) dlsym(handle, "foo"); if (!foo) { printf("Could not load symbol\n"); return -1; } if ((*foo)()) { printf("Invalid return from foo()\n"); return -1; } if (dlclose(handle)) { printf("Could not close library\n"); return -1; } ; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.setCompilers/conftest /tmp/petsc-LDoAyU/config.setCompilers/conftest.o -ldl Using dynamic linker mpicc with flags ['-shared'] and library extension so ================================================================================ TEST output from config.setCompilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/setCompilers.py:1635) TESTING: output from config.setCompilers(config/BuildSystem/config/setCompilers.py:1635) Output module data as defines and substitutions Substituting "CC" with "mpicc" Substituting "CFLAGS" with "" Defined make macro "CC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "CPP" with "mpicc -E" Substituting "CPPFLAGS" with "" Substituting "CUDAC" with "nvcc" Substituting "CUDAFLAGS" with "" Substituting "CUDAPP" with "nvcc -E" Substituting "CUDAPPFLAGS" with "-Wno-deprecated-gpu-targets" Substituting "CXX" with "mpicxx" Substituting "CXX_CXXFLAGS" with "" Substituting "CXXFLAGS" with "" Substituting "CXX_LINKER_SLFLAG" with "-Wl,-rpath," Substituting "CXXPP" with "mpicxx -E" Substituting "CXXPPFLAGS" with "" Substituting "FC" with "" Substituting "LDFLAGS" with "" Substituting "LIBS" with "-ldl " Substituting "SHARED_LIBRARY_FLAG" with "-shared" child config.setCompilers 12.927872 ================================================================================ TEST checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(/autofs/nccs-svm1_home1/adams/petsc/config/PETSc/options/sharedLibraries.py:36) TESTING: checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:36) ================================================================================ TEST configureSharedLibraries from PETSc.options.sharedLibraries(/autofs/nccs-svm1_home1/adams/petsc/config/PETSc/options/sharedLibraries.py:52) TESTING: configureSharedLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:52) Checks whether shared libraries should be used, for which you must - Specify --with-shared-libraries - Have found a working shared linker Defines PETSC_USE_SHARED_LIBRARIES if they are used Executing: uname -s stdout: Linux Defined make rule "shared_arch" with dependencies "shared_linux" and code [] Defined make macro "SONAME_FUNCTION" to "$(1).so.$(2)" Defined make macro "SL_LINKER_FUNCTION" to "-shared -Wl,-soname,$(call SONAME_FUNCTION,$(notdir $(1)),$(2))" Defined make macro "BUILDSHAREDLIB" to "yes" Defined "USE_SHARED_LIBRARIES" to "1" ================================================================================ TEST configureDynamicLibraries from PETSc.options.sharedLibraries(/autofs/nccs-svm1_home1/adams/petsc/config/PETSc/options/sharedLibraries.py:94) TESTING: configureDynamicLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:94) Checks whether dynamic loading is available (with dlfcn.h and libdl) Defined "HAVE_DYNAMIC_LIBRARIES" to "1" ================================================================================ TEST configureSerializedFunctions from PETSc.options.sharedLibraries(/autofs/nccs-svm1_home1/adams/petsc/config/PETSc/options/sharedLibraries.py:100) TESTING: configureSerializedFunctions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:100) Defines PETSC_SERIALIZE_FUNCTIONS if they are used Requires shared libraries child PETSc.options.sharedLibraries 0.009772 ================================================================================ TEST configureIndexSize from PETSc.options.indexTypes(/autofs/nccs-svm1_home1/adams/petsc/config/PETSc/options/indexTypes.py:30) TESTING: configureIndexSize from PETSc.options.indexTypes(config/PETSc/options/indexTypes.py:30) Defined "USE_64BIT_INDICES" to "1" Checking for functions [__floatdidf] in library ['-lgcc_s.1'] [] Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.libraries/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.libraries /tmp/petsc-LDoAyU/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char __floatdidf(); static void _check___floatdidf() { __floatdidf(); } int main() { _check___floatdidf();; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.libraries/conftest /tmp/petsc-LDoAyU/config.libraries/conftest.o -lgcc_s.1 -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lgcc_s.1 /usr/bin/sha1sum: /tmp/petsc-LDoAyU/config.libraries/conftest: No such file or directory collect2: error: ld returned 1 exit status Defined make macro "PETSC_INDEX_SIZE" to "64" child PETSc.options.indexTypes 0.382210 ================================================================================ TEST configureCompilerFlags from config.compilerFlags(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/compilerFlags.py:72) TESTING: configureCompilerFlags from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:72) Get the default compiler flags Defined make macro "C_VERSION" to "gcc (GCC) 6.4.0" Defined make macro "MPICC_SHOW" to "gcc -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.0.1-20190611-cyaenjgora6now2nusxzkfli4mzjnudx/include -pthread -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.0.1-20190611-cyaenjgora6now2nusxzkfli4mzjnudx/lib -lmpiprofilesupport -lmpi_ibm" Trying C compiler flag -Wall Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.setCompilers/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.libraries -Wall /tmp/petsc-LDoAyU/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wall Trying C compiler flag -Wwrite-strings Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.setCompilers/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.libraries -Wall -Wwrite-strings /tmp/petsc-LDoAyU/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wwrite-strings Trying C compiler flag -Wno-strict-aliasing Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.setCompilers/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing /tmp/petsc-LDoAyU/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wno-strict-aliasing Trying C compiler flag -Wno-unknown-pragmas Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.setCompilers/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas /tmp/petsc-LDoAyU/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wno-unknown-pragmas Trying C compiler flag -fstack-protector Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.setCompilers/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector /tmp/petsc-LDoAyU/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fstack-protector Trying C compiler flag -mfp16-format=ieee Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.setCompilers/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -mfp16-format=ieee /tmp/petsc-LDoAyU/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 1 stderr: gcc: error: unrecognized command line option '-mfp16-format=ieee' Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -mfp16-format=ieee due to nonzero status from link Rejecting compiler flag -mfp16-format=ieee due to gcc: error: unrecognized command line option '-mfp16-format=ieee' PETSc Error: No output file produced Rejected C compiler flag -mfp16-format=ieee Trying C compiler flag -fvisibility=hidden Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.setCompilers/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden /tmp/petsc-LDoAyU/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fvisibility=hidden Trying C compiler flag -g -O2 -fPIC Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.setCompilers/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -g -O2 -fPIC Defined make macro "Cxx_VERSION" to "g++ (GCC) 6.4.0" Defined make macro "MPICXX_SHOW" to "g++ -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.0.1-20190611-cyaenjgora6now2nusxzkfli4mzjnudx/include -pthread -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.0.1-20190611-cyaenjgora6now2nusxzkfli4mzjnudx/lib -lmpiprofilesupport -lmpi_ibm" Trying Cxx compiler flag -Wall Executing: mpicxx -c -o /tmp/petsc-LDoAyU/config.setCompilers/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -Wall /tmp/petsc-LDoAyU/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wall Trying Cxx compiler flag -Wwrite-strings Executing: mpicxx -c -o /tmp/petsc-LDoAyU/config.setCompilers/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -Wall -Wwrite-strings /tmp/petsc-LDoAyU/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wwrite-strings Trying Cxx compiler flag -Wno-strict-aliasing Executing: mpicxx -c -o /tmp/petsc-LDoAyU/config.setCompilers/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing /tmp/petsc-LDoAyU/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wno-strict-aliasing Trying Cxx compiler flag -Wno-unknown-pragmas Executing: mpicxx -c -o /tmp/petsc-LDoAyU/config.setCompilers/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas /tmp/petsc-LDoAyU/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wno-unknown-pragmas Trying Cxx compiler flag -fstack-protector Executing: mpicxx -c -o /tmp/petsc-LDoAyU/config.setCompilers/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector /tmp/petsc-LDoAyU/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -fstack-protector Trying Cxx compiler flag -fvisibility=hidden Executing: mpicxx -c -o /tmp/petsc-LDoAyU/config.setCompilers/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden /tmp/petsc-LDoAyU/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -fvisibility=hidden Trying Cxx compiler flag -g -O2 -fPIC Executing: mpicxx -c -o /tmp/petsc-LDoAyU/config.setCompilers/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -g -O2 -fPIC Defined make macro "CUDA_VERSION" to "nvcc: NVIDIA (R) Cuda compiler driver" Defined make macro "MPICC_SHOW" to "Unavailable" Trying CUDA compiler flag -O2 -g Executing: nvcc -c -o /tmp/petsc-LDoAyU/config.setCompilers/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -O2 -g -Wno-deprecated-gpu-targets /tmp/petsc-LDoAyU/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added CUDA compiler flag -O2 -g child config.compilerFlags 2.031297 Executing: mpicc --help | head -n 20 stdout: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase. --help Display this information. --target-help Display target specific command line options. --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...]. Display specific types of command line options. (Use '-v --help' to display command line options of sub-processes). --version Display compiler version information. -dumpspecs Display all of the built in spec strings. -dumpversion Display the version of the compiler. -dumpmachine Display the compiler's target processor. -print-search-dirs Display the directories in the compiler's search path. -print-libgcc-file-name Display the name of the compiler's companion library. -print-file-name= Display the full path to library . -print-prog-name= Display the full path to compiler component . -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path. -print-multi-directory Display the root directory for versions of libgcc. -print-multi-lib Display the mapping between command line options and ================================================================================ TEST checkRestrict from config.compilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/compilers.py:138) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:138) Check for the C/CXX restrict keyword Executing: mpicc -V All intermediate test results are stored in /tmp/petsc-LDoAyU/config.compilers Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.compilers/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.compilers/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-LDoAyU/config.compilers/conftest.c: In function 'main': /tmp/petsc-LDoAyU/config.compilers/conftest.c:5:20: warning: unused variable 'x' [-Wunused-variable] float * __restrict x;; ^ Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set C restrict keyword to __restrict Defined "C_RESTRICT" to "__restrict" ================================================================================ TEST checkCFormatting from config.compilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/compilers.py:391) TESTING: checkCFormatting from config.compilers(config/BuildSystem/config/compilers.py:391) Activate format string checking if using the GNU compilers ================================================================================ TEST checkCInline from config.compilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/compilers.py:108) TESTING: checkCInline from config.compilers(config/BuildSystem/config/compilers.py:108) Check for C inline keyword Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.compilers/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set C Inline keyword to inline Defined "C_INLINE" to "inline" ================================================================================ TEST checkDynamicLoadFlag from config.compilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/compilers.py:402) TESTING: checkDynamicLoadFlag from config.compilers(config/BuildSystem/config/compilers.py:402) Checks that dlopen() takes RTLD_XXX, and defines PETSC_HAVE_RTLD_XXX if it does Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.compilers/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LAZY);dlopen(libname, RTLD_NOW);dlopen(libname, RTLD_LOCAL);dlopen(libname, RTLD_GLOBAL); ; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.compilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_LAZY" to "1" Defined "HAVE_RTLD_NOW" to "1" Defined "HAVE_RTLD_LOCAL" to "1" Defined "HAVE_RTLD_GLOBAL" to "1" ================================================================================ TEST checkCLibraries from config.compilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/compilers.py:202) TESTING: checkCLibraries from config.compilers(config/BuildSystem/config/compilers.py:202) Determines the libraries needed to link with C compiled code Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.compilers/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void asub(void) {char s[16];printf("testing %s",s);} Executing: mpicxx -c -o /tmp/petsc-LDoAyU/config.compilers/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Executing: mpicxx -o /tmp/petsc-LDoAyU/config.compilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.compilers/conftest.o /tmp/petsc-LDoAyU/config.compilers/confc.o -ldl C libraries are not needed when using C++ linker ================================================================================ TEST checkDependencyGenerationFlag from config.compilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/compilers.py:1345) TESTING: checkDependencyGenerationFlag from config.compilers(config/BuildSystem/config/compilers.py:1345) Check if -MMD works for dependency generation, and add it if it does Trying C compiler flag -MMD -MP Defined make macro "C_DEPFLAGS" to "-MMD -MP" Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.setCompilers/conftest.o -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC -MMD -MP /tmp/petsc-LDoAyU/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Trying Cxx compiler flag -MMD -MP Defined make macro "CXX_DEPFLAGS" to "-MMD -MP" Executing: mpicxx -c -o /tmp/petsc-LDoAyU/config.setCompilers/conftest.o -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC -MMD -MP /tmp/petsc-LDoAyU/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Trying CUDA compiler flag -MMD -MP Rejected CUDA compiler flag -MMD -MP Trying CUDA compiler flag -MMD Rejected CUDA compiler flag -MMD Trying CUDA compiler flag -xMMD Rejected CUDA compiler flag -xMMD Trying CUDA compiler flag -qmakedep=gcc Rejected CUDA compiler flag -qmakedep=gcc Trying CUDA compiler flag -MD Rejected CUDA compiler flag -MD Executing: nvcc -c -o /tmp/petsc-LDoAyU/config.setCompilers/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -O2 -g -MMD -MP -Wno-deprecated-gpu-targets /tmp/petsc-LDoAyU/config.setCompilers/conftest.cu Possible ERROR while running compiler: exit code 1 stderr: nvcc fatal : Unknown option 'MMD' Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -MMD -MP due to nonzero status from link Rejecting compiler flag -MMD -MP due to nvcc fatal : Unknown option 'MMD' PETSc Error: No output file produced Executing: nvcc -c -o /tmp/petsc-LDoAyU/config.setCompilers/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -O2 -g -MMD -Wno-deprecated-gpu-targets /tmp/petsc-LDoAyU/config.setCompilers/conftest.cu Possible ERROR while running compiler: exit code 1 stderr: nvcc fatal : Unknown option 'MMD' Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -MMD due to nonzero status from link Rejecting compiler flag -MMD due to nvcc fatal : Unknown option 'MMD' PETSc Error: No output file produced Executing: nvcc -c -o /tmp/petsc-LDoAyU/config.setCompilers/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -O2 -g -xMMD -Wno-deprecated-gpu-targets /tmp/petsc-LDoAyU/config.setCompilers/conftest.cu Possible ERROR while running compiler: exit code 1 stderr: nvcc fatal : Unknown option 'xMMD' Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -xMMD due to nonzero status from link Rejecting compiler flag -xMMD due to nvcc fatal : Unknown option 'xMMD' PETSc Error: No output file produced Executing: nvcc -c -o /tmp/petsc-LDoAyU/config.setCompilers/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -O2 -g -qmakedep=gcc -Wno-deprecated-gpu-targets /tmp/petsc-LDoAyU/config.setCompilers/conftest.cu Possible ERROR while running compiler: exit code 1 stderr: nvcc fatal : Unknown option 'qmakedep' Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -qmakedep=gcc due to nonzero status from link Rejecting compiler flag -qmakedep=gcc due to nvcc fatal : Unknown option 'qmakedep' PETSc Error: No output file produced Executing: nvcc -c -o /tmp/petsc-LDoAyU/config.setCompilers/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -O2 -g -MD -Wno-deprecated-gpu-targets /tmp/petsc-LDoAyU/config.setCompilers/conftest.cu Possible ERROR while running compiler: exit code 1 stderr: nvcc fatal : Unknown option 'MD' Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -MD due to nonzero status from link Rejecting compiler flag -MD due to nvcc fatal : Unknown option 'MD' PETSc Error: No output file produced ================================================================================ TEST checkC99Flag from config.compilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/compilers.py:1390) TESTING: checkC99Flag from config.compilers(config/BuildSystem/config/compilers.py:1390) Check for -std=c99 or equivalent flag Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.setCompilers/conftest.o -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-LDoAyU/config.setCompilers/conftest.c: In function 'main': /tmp/petsc-LDoAyU/config.setCompilers/conftest.c:7:11: warning: variable 'x' set but not used [-Wunused-but-set-variable] float x[2],y; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { float x[2],y; y = FLT_ROUNDS; // c++ comment int j = 2; for (int i=0; i<2; i++){ x[i] = i*j*y; } ; return 0; } Accepted C99 compile flag: Defined "HAVE_C99" to "1" Executing: mpicxx --help | head -n 20 stdout: Usage: g++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase. --help Display this information. --target-help Display target specific command line options. --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...]. Display specific types of command line options. (Use '-v --help' to display command line options of sub-processes). --version Display compiler version information. -dumpspecs Display all of the built in spec strings. -dumpversion Display the version of the compiler. -dumpmachine Display the compiler's target processor. -print-search-dirs Display the directories in the compiler's search path. -print-libgcc-file-name Display the name of the compiler's companion library. -print-file-name= Display the full path to library . -print-prog-name= Display the full path to compiler component . -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path. -print-multi-directory Display the root directory for versions of libgcc. -print-multi-lib Display the mapping between command line options and ================================================================================ TEST checkRestrict from config.compilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/compilers.py:138) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:138) Check for the C/CXX restrict keyword Executing: mpicc -V Executing: mpicxx -c -o /tmp/petsc-LDoAyU/config.compilers/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.compilers/conftest.cc Possible ERROR while running compiler: stderr: /tmp/petsc-LDoAyU/config.compilers/conftest.cc: In function 'int main()': /tmp/petsc-LDoAyU/config.compilers/conftest.cc:5:20: warning: unused variable 'x' [-Wunused-variable] float * __restrict x;; ^ Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set Cxx restrict keyword to __restrict Defined "CXX_RESTRICT" to "__restrict" ================================================================================ TEST checkCxxOptionalExtensions from config.compilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/compilers.py:421) TESTING: checkCxxOptionalExtensions from config.compilers(config/BuildSystem/config/compilers.py:421) Check whether the C++ compiler (IBM xlC, OSF5) need special flag for .c files which contain C++ Executing: mpicxx -c -o /tmp/petsc-LDoAyU/config.setCompilers/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } ================================================================================ TEST checkCxxInline from config.compilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/compilers.py:123) TESTING: checkCxxInline from config.compilers(config/BuildSystem/config/compilers.py:123) Check for C++ inline keyword Executing: mpicxx -c -o /tmp/petsc-LDoAyU/config.compilers/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set Cxx Inline keyword to inline Defined "CXX_INLINE" to "inline" ================================================================================ TEST checkCxxLibraries from config.compilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/compilers.py:533) TESTING: checkCxxLibraries from config.compilers(config/BuildSystem/config/compilers.py:533) Determines the libraries needed to link with C++ from C and Fortran Executing: mpicxx -c -o /tmp/petsc-LDoAyU/config.compilers/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.compilers/conftest.o -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Executing: mpicc -o /tmp/petsc-LDoAyU/config.compilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.compilers/conftest.o /tmp/petsc-LDoAyU/config.compilers/confc.o -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-LDoAyU/config.compilers/confc.o: In function `asub()': /tmp/petsc-LDoAyU/config.compilers/conftest.cc:7: undefined reference to `__cxa_allocate_exception' /tmp/petsc-LDoAyU/config.compilers/conftest.cc:7: undefined reference to `__cxa_throw' /tmp/petsc-LDoAyU/config.compilers/conftest.cc:7: undefined reference to `__cxa_begin_catch' /tmp/petsc-LDoAyU/config.compilers/conftest.cc:7: undefined reference to `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)' /tmp/petsc-LDoAyU/config.compilers/conftest.cc:7: undefined reference to `__cxa_end_catch' /tmp/petsc-LDoAyU/config.compilers/conftest.cc:7: undefined reference to `__cxa_end_catch' /tmp/petsc-LDoAyU/config.compilers/confc.o:(.toc+0x0): undefined reference to `typeinfo for int' /tmp/petsc-LDoAyU/config.compilers/confc.o:(.toc+0x8): undefined reference to `std::cout' /tmp/petsc-LDoAyU/config.compilers/confc.o:(.toc+0x10): undefined reference to `std::ios_base::Init::~Init()' /tmp/petsc-LDoAyU/config.compilers/confc.o: In function `__static_initialization_and_destruction_0': /autofs/nccs-svm1_sw/summit/gcc/6.4.0/include/c++/6.4.0/iostream:74: undefined reference to `std::ios_base::Init::Init()' /tmp/petsc-LDoAyU/config.compilers/confc.o:(.data.DW.ref._ZTIi[DW.ref._ZTIi]+0x0): undefined reference to `typeinfo for int' /tmp/petsc-LDoAyU/config.compilers/confc.o:(.data.DW.ref.__gxx_personality_v0[DW.ref.__gxx_personality_v0]+0x0): undefined reference to `__gxx_personality_v0' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-LDoAyU/config.compilers/conftest' /usr/bin/sha1sum: /tmp/petsc-LDoAyU/config.compilers/conftest: No such file or directory collect2: error: ld returned 1 exit status Executing: uname -s stdout: Linux Executing: mpicxx -c -o /tmp/petsc-LDoAyU/config.compilers/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void asub(void) {std::vector v; try { throw 20; } catch (int e) { std::cout << "An exception occurred"; }} Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.compilers/conftest.o -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main(int argc,char **args) {return 0;} Executing: mpicc -o /tmp/petsc-LDoAyU/config.compilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.compilers/conftest.o /tmp/petsc-LDoAyU/config.compilers/confc.o -lstdc++ -ldl compilers: C++ requires -lstdc++ to link with C compiler ================================================================================ TEST checkCxxDialect from config.compilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/compilers.py:449) TESTING: checkCxxDialect from config.compilers(config/BuildSystem/config/compilers.py:449) Determine the Cxx dialect supported by the compiler [and correspoding compiler option - if any]. -with-cxx-dialect can take options: auto: use highest dialect configure can determine cxx17: [future?] cxx14: gnu++14 or c++14 cxx11: gnu++11 or c++11 0: disable CxxDialect check and use compiler default checkCxxDialect: checking CXX14 with flag: Defined "HAVE_CXX_DIALECT_CXX14" to "1" Defined "HAVE_CXX_DIALECT_CXX11" to "1" Executing: mpicxx -c -o /tmp/petsc-LDoAyU/config.setCompilers/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include template constexpr T Cubed( T x ) { return x*x*x; } int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); std::cout << x; constexpr std::complex I(0.0,1.0); auto lambda = [](auto x, auto y) {return x + y;}; return lambda(3,4); ; return 0; } Executing: mpicxx -V ================================================================================ TEST setupFrameworkCompilers from config.compilers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/compilers.py:1455) TESTING: setupFrameworkCompilers from config.compilers(config/BuildSystem/config/compilers.py:1455) child config.compilers 4.365763 ================================================================================ TEST configureClosure from config.utilities.closure(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/utilities/closure.py:17) TESTING: configureClosure from config.utilities.closure(config/BuildSystem/config/utilities/closure.py:17) Determine if Apple ^close syntax is supported in C All intermediate test results are stored in /tmp/petsc-LDoAyU/config.utilities.closure Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.utilities.closure/conftest.o -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.utilities.closure/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-LDoAyU/config.utilities.closure/conftest.c: In function 'main': /tmp/petsc-LDoAyU/config.utilities.closure/conftest.c:6:6: error: expected identifier or '(' before '^' token int (^closure)(int);; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int (^closure)(int);; return 0; } Compile failed inside link child config.utilities.closure 0.059403 child config.compilersFortran 0.000026 ================================================================================ TEST checkStdC from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:105) TESTING: checkStdC from config.headers(config/BuildSystem/config/headers.py:105) Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.headers/conftest.o -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.headers/conftest.o -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #define ISLOWER(c) ('a' <= (c) && (c) <= 'z') #define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c)) #define XOR(e, f) (((e) && !(f)) || (!(e) && (f))) int main() { int i; for(i = 0; i < 256; i++) if (XOR(islower(i), ISLOWER(i)) || toupper(i) != TOUPPER(i)) exit(2); exit(0); ; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.headers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.headers/conftest.o -lstdc++ -ldl Testing executable /tmp/petsc-LDoAyU/config.headers/conftest to see if it can be run Executing: /tmp/petsc-LDoAyU/config.headers/conftest Executing: /tmp/petsc-LDoAyU/config.headers/conftest ================================================================================ TEST checkStat from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:138) TESTING: checkStat from config.headers(config/BuildSystem/config/headers.py:138) Checks whether stat file-mode macros are broken, and defines STAT_MACROS_BROKEN if they are Preprocessing source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(S_ISBLK) && defined(S_IFDIR) # if S_ISBLK (S_IFDIR) You lose. # endif #endif #if defined(S_ISBLK) && defined(S_IFCHR) # if S_ISBLK (S_IFCHR) You lose. # endif #endif #if defined(S_ISLNK) && defined(S_IFREG) # if S_ISLNK (S_IFREG) You lose. # endif #endif #if defined(S_ISSOCK) && defined(S_IFREG) # if S_ISSOCK (S_IFREG) You lose. # endif #endif Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c ================================================================================ TEST checkSysWait from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:173) TESTING: checkSysWait from config.headers(config/BuildSystem/config/headers.py:173) Check for POSIX.1 compatible sys/wait.h, and defines HAVE_SYS_WAIT_H if found Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.headers/conftest.o -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifndef WEXITSTATUS #define WEXITSTATUS(stat_val) ((unsigned)(stat_val) >> 8) #endif #ifndef WIFEXITED #define WIFEXITED(stat_val) (((stat_val) & 255) == 0) #endif int main() { int s; wait (&s); s = WIFEXITED (s) ? WEXITSTATUS (s) : 1; ; return 0; } Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST checkTime from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:195) TESTING: checkTime from config.headers(config/BuildSystem/config/headers.py:195) Checks if you can safely include both and , and if so defines TIME_WITH_SYS_TIME Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_TIME_H" to "1" Checking for header: sys/time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_TIME_H" to "1" ================================================================================ TEST checkMath from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:201) TESTING: checkMath from config.headers(config/BuildSystem/config/headers.py:201) Checks for the math headers and defines Checking for header: math.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.headers/conftest.o -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double pi = M_PI; if (pi); ; return 0; } Found math #defines, like M_PI ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SETJMP_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-LDoAyU/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-LDoAyU/config.headers/conftest.c" # 1 "/tmp/petsc-LDoAyU/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-LDoAyU/config.headers/conftest.c" 2 # 1 "/tmp/petsc-LDoAyU/config.headers/conffix.h" 1 # 3 "/tmp/petsc-LDoAyU/config.headers/conftest.c" 2 stderr: /tmp/petsc-LDoAyU/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-LDoAyU/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-LDoAyU/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_FCNTL_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-LDoAyU/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-LDoAyU/config.headers/conftest.c" # 1 "/tmp/petsc-LDoAyU/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-LDoAyU/config.headers/conftest.c" 2 # 1 "/tmp/petsc-LDoAyU/config.headers/conffix.h" 1 # 3 "/tmp/petsc-LDoAyU/config.headers/conftest.c" 2 stderr: /tmp/petsc-LDoAyU/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-LDoAyU/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-LDoAyU/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_MALLOC_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_PWD_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_STRINGS_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_UNISTD_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_SYSINFO_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-LDoAyU/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-LDoAyU/config.headers/conftest.c" # 1 "/tmp/petsc-LDoAyU/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-LDoAyU/config.headers/conftest.c" 2 # 1 "/tmp/petsc-LDoAyU/config.headers/conffix.h" 1 # 3 "/tmp/petsc-LDoAyU/config.headers/conftest.c" 2 stderr: /tmp/petsc-LDoAyU/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-LDoAyU/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-LDoAyU/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_PARAM_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_PROCFS_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_RESOURCE_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-LDoAyU/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-LDoAyU/config.headers/conftest.c" # 1 "/tmp/petsc-LDoAyU/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-LDoAyU/config.headers/conftest.c" 2 # 1 "/tmp/petsc-LDoAyU/config.headers/conffix.h" 1 # 3 "/tmp/petsc-LDoAyU/config.headers/conftest.c" 2 stderr: /tmp/petsc-LDoAyU/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-LDoAyU/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-LDoAyU/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_TIMES_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_UTSNAME_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_SOCKET_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_NETINET_IN_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_NETDB_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Direct.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-LDoAyU/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-LDoAyU/config.headers/conftest.c" # 1 "/tmp/petsc-LDoAyU/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-LDoAyU/config.headers/conftest.c" 2 # 1 "/tmp/petsc-LDoAyU/config.headers/conffix.h" 1 # 3 "/tmp/petsc-LDoAyU/config.headers/conftest.c" 2 stderr: /tmp/petsc-LDoAyU/config.headers/conftest.c:3:20: fatal error: Direct.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-LDoAyU/config.headers/conftest.c:3:20: fatal error: Direct.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-LDoAyU/config.headers/conftest.c:3:20: fatal error: Direct.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_TIME_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-LDoAyU/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-LDoAyU/config.headers/conftest.c" # 1 "/tmp/petsc-LDoAyU/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-LDoAyU/config.headers/conftest.c" 2 # 1 "/tmp/petsc-LDoAyU/config.headers/conffix.h" 1 # 3 "/tmp/petsc-LDoAyU/config.headers/conftest.c" 2 stderr: /tmp/petsc-LDoAyU/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-LDoAyU/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-LDoAyU/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_TYPES_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-LDoAyU/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-LDoAyU/config.headers/conftest.c" # 1 "/tmp/petsc-LDoAyU/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-LDoAyU/config.headers/conftest.c" 2 # 1 "/tmp/petsc-LDoAyU/config.headers/conffix.h" 1 # 3 "/tmp/petsc-LDoAyU/config.headers/conftest.c" 2 stderr: /tmp/petsc-LDoAyU/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-LDoAyU/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-LDoAyU/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-LDoAyU/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-LDoAyU/config.headers/conftest.c" # 1 "/tmp/petsc-LDoAyU/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-LDoAyU/config.headers/conftest.c" 2 # 1 "/tmp/petsc-LDoAyU/config.headers/conffix.h" 1 # 3 "/tmp/petsc-LDoAyU/config.headers/conftest.c" 2 stderr: /tmp/petsc-LDoAyU/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-LDoAyU/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-LDoAyU/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_STDINT_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_PTHREAD_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: inttypes.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_INTTYPES_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: immintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-LDoAyU/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-LDoAyU/config.headers/conftest.c" # 1 "/tmp/petsc-LDoAyU/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-LDoAyU/config.headers/conftest.c" 2 # 1 "/tmp/petsc-LDoAyU/config.headers/conffix.h" 1 # 3 "/tmp/petsc-LDoAyU/config.headers/conftest.c" 2 stderr: /tmp/petsc-LDoAyU/config.headers/conftest.c:3:23: fatal error: immintrin.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-LDoAyU/config.headers/conftest.c:3:23: fatal error: immintrin.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-LDoAyU/config.headers/conftest.c:3:23: fatal error: immintrin.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: zmmintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-LDoAyU/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-LDoAyU/config.headers/conftest.c" # 1 "/tmp/petsc-LDoAyU/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-LDoAyU/config.headers/conftest.c" 2 # 1 "/tmp/petsc-LDoAyU/config.headers/conffix.h" 1 # 3 "/tmp/petsc-LDoAyU/config.headers/conftest.c" 2 stderr: /tmp/petsc-LDoAyU/config.headers/conftest.c:3:23: fatal error: zmmintrin.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-LDoAyU/config.headers/conftest.c:3:23: fatal error: zmmintrin.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-LDoAyU/config.headers/conftest.c:3:23: fatal error: zmmintrin.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SETJMP_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-LDoAyU/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-LDoAyU/config.headers/conftest.c" # 1 "/tmp/petsc-LDoAyU/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-LDoAyU/config.headers/conftest.c" 2 # 1 "/tmp/petsc-LDoAyU/config.headers/conffix.h" 1 # 3 "/tmp/petsc-LDoAyU/config.headers/conftest.c" 2 stderr: /tmp/petsc-LDoAyU/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-LDoAyU/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-LDoAyU/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_FCNTL_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-LDoAyU/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-LDoAyU/config.headers/conftest.c" # 1 "/tmp/petsc-LDoAyU/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-LDoAyU/config.headers/conftest.c" 2 # 1 "/tmp/petsc-LDoAyU/config.headers/conffix.h" 1 # 3 "/tmp/petsc-LDoAyU/config.headers/conftest.c" 2 stderr: /tmp/petsc-LDoAyU/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-LDoAyU/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-LDoAyU/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_MALLOC_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_PWD_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_STRINGS_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_UNISTD_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_SYSINFO_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-LDoAyU/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-LDoAyU/config.headers/conftest.c" # 1 "/tmp/petsc-LDoAyU/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-LDoAyU/config.headers/conftest.c" 2 # 1 "/tmp/petsc-LDoAyU/config.headers/conffix.h" 1 # 3 "/tmp/petsc-LDoAyU/config.headers/conftest.c" 2 stderr: /tmp/petsc-LDoAyU/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-LDoAyU/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-LDoAyU/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_PARAM_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_PROCFS_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_RESOURCE_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-LDoAyU/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-LDoAyU/config.headers/conftest.c" # 1 "/tmp/petsc-LDoAyU/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-LDoAyU/config.headers/conftest.c" 2 # 1 "/tmp/petsc-LDoAyU/config.headers/conffix.h" 1 # 3 "/tmp/petsc-LDoAyU/config.headers/conftest.c" 2 stderr: /tmp/petsc-LDoAyU/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-LDoAyU/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-LDoAyU/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_TIMES_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_UTSNAME_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_SOCKET_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_NETINET_IN_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_NETDB_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Direct.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-LDoAyU/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-LDoAyU/config.headers/conftest.c" # 1 "/tmp/petsc-LDoAyU/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-LDoAyU/config.headers/conftest.c" 2 # 1 "/tmp/petsc-LDoAyU/config.headers/conffix.h" 1 # 3 "/tmp/petsc-LDoAyU/config.headers/conftest.c" 2 stderr: /tmp/petsc-LDoAyU/config.headers/conftest.c:3:20: fatal error: Direct.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-LDoAyU/config.headers/conftest.c:3:20: fatal error: Direct.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-LDoAyU/config.headers/conftest.c:3:20: fatal error: Direct.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_TIME_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-LDoAyU/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-LDoAyU/config.headers/conftest.c" # 1 "/tmp/petsc-LDoAyU/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-LDoAyU/config.headers/conftest.c" 2 # 1 "/tmp/petsc-LDoAyU/config.headers/conffix.h" 1 # 3 "/tmp/petsc-LDoAyU/config.headers/conftest.c" 2 stderr: /tmp/petsc-LDoAyU/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-LDoAyU/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-LDoAyU/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_TYPES_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-LDoAyU/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-LDoAyU/config.headers/conftest.c" # 1 "/tmp/petsc-LDoAyU/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-LDoAyU/config.headers/conftest.c" 2 # 1 "/tmp/petsc-LDoAyU/config.headers/conffix.h" 1 # 3 "/tmp/petsc-LDoAyU/config.headers/conftest.c" 2 stderr: /tmp/petsc-LDoAyU/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-LDoAyU/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-LDoAyU/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-LDoAyU/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-LDoAyU/config.headers/conftest.c" # 1 "/tmp/petsc-LDoAyU/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-LDoAyU/config.headers/conftest.c" 2 # 1 "/tmp/petsc-LDoAyU/config.headers/conffix.h" 1 # 3 "/tmp/petsc-LDoAyU/config.headers/conftest.c" 2 stderr: /tmp/petsc-LDoAyU/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-LDoAyU/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-LDoAyU/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_STDINT_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_PTHREAD_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: inttypes.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_INTTYPES_H" to "1" ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: immintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-LDoAyU/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-LDoAyU/config.headers/conftest.c" # 1 "/tmp/petsc-LDoAyU/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-LDoAyU/config.headers/conftest.c" 2 # 1 "/tmp/petsc-LDoAyU/config.headers/conffix.h" 1 # 3 "/tmp/petsc-LDoAyU/config.headers/conftest.c" 2 stderr: /tmp/petsc-LDoAyU/config.headers/conftest.c:3:23: fatal error: immintrin.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-LDoAyU/config.headers/conftest.c:3:23: fatal error: immintrin.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-LDoAyU/config.headers/conftest.c:3:23: fatal error: immintrin.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: zmmintrin.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-LDoAyU/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-LDoAyU/config.headers/conftest.c" # 1 "/tmp/petsc-LDoAyU/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-LDoAyU/config.headers/conftest.c" 2 # 1 "/tmp/petsc-LDoAyU/config.headers/conffix.h" 1 # 3 "/tmp/petsc-LDoAyU/config.headers/conftest.c" 2 stderr: /tmp/petsc-LDoAyU/config.headers/conftest.c:3:23: fatal error: zmmintrin.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-LDoAyU/config.headers/conftest.c:3:23: fatal error: zmmintrin.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-LDoAyU/config.headers/conftest.c:3:23: fatal error: zmmintrin.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST checkRecursiveMacros from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:216) TESTING: checkRecursiveMacros from config.headers(config/BuildSystem/config/headers.py:216) Checks that the preprocessor allows recursive macros, and if not defines HAVE_BROKEN_RECURSIVE_MACRO Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.headers/conftest.o -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void a(int i, int j) {} #define a(b) a(b,__LINE__) int main() { a(0); ; return 0; } child config.headers 4.707433 ================================================================================ TEST configureCacheDetails from config.utilities.cacheDetails(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/utilities/cacheDetails.py:78) TESTING: configureCacheDetails from config.utilities.cacheDetails(config/BuildSystem/config/utilities/cacheDetails.py:78) Try to determine the size and associativity of the cache. All intermediate test results are stored in /tmp/petsc-LDoAyU/config.utilities.cacheDetails Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.utilities.cacheDetails/conftest.o -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { ; return 0; } Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.utilities.cacheDetails/conftest.o -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_LINESIZE()); fclose(output);; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.utilities.cacheDetails/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.utilities.cacheDetails/conftest.o -lstdc++ -ldl Testing executable /tmp/petsc-LDoAyU/config.utilities.cacheDetails/conftest to see if it can be run Executing: /tmp/petsc-LDoAyU/config.utilities.cacheDetails/conftest Executing: /tmp/petsc-LDoAyU/config.utilities.cacheDetails/conftest Defined "LEVEL1_DCACHE_LINESIZE" to "32" child config.utilities.cacheDetails 0.588317 ================================================================================ TEST check_struct_sigaction from config.types(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/types.py:43) TESTING: check_struct_sigaction from config.types(config/BuildSystem/config/types.py:43) Checks if "struct sigaction" exists in signal.h. This check is for C89 check. Checking for type: struct sigaction All intermediate test results are stored in /tmp/petsc-LDoAyU/config.types Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.types/conftest.o -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-LDoAyU/config.types/conftest.c: In function 'main': /tmp/petsc-LDoAyU/config.types/conftest.c:11:18: warning: unused variable 'a' [-Wunused-variable] struct sigaction a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { struct sigaction a;; return 0; } struct sigaction found Defined "HAVE_STRUCT_SIGACTION" to "1" ================================================================================ TEST check__int64 from config.types(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/types.py:49) TESTING: check__int64 from config.types(config/BuildSystem/config/types.py:49) Checks if __int64 exists. This is primarily for windows. Checking for type: __int64 Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.types/conftest.o -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.types/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-LDoAyU/config.types/conftest.c: In function 'main': /tmp/petsc-LDoAyU/config.types/conftest.c:11:1: error: unknown type name '__int64' __int64 a;; ^~~~~~~ /tmp/petsc-LDoAyU/config.types/conftest.c:11:9: warning: unused variable 'a' [-Wunused-variable] __int64 a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { __int64 a;; return 0; } __int64 found ================================================================================ TEST checkSizeTypes from config.types(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/types.py:55) TESTING: checkSizeTypes from config.types(config/BuildSystem/config/types.py:55) Checks for types associated with sizes, such as size_t. Checking for type: size_t Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.types/conftest.o -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-LDoAyU/config.types/conftest.c: In function 'main': /tmp/petsc-LDoAyU/config.types/conftest.c:11:8: warning: unused variable 'a' [-Wunused-variable] size_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { size_t a;; return 0; } size_t found ================================================================================ TEST checkFileTypes from config.types(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/types.py:65) TESTING: checkFileTypes from config.types(config/BuildSystem/config/types.py:65) Checks for types associated with files, such as mode_t, off_t, etc. Checking for type: mode_t Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.types/conftest.o -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-LDoAyU/config.types/conftest.c: In function 'main': /tmp/petsc-LDoAyU/config.types/conftest.c:11:8: warning: unused variable 'a' [-Wunused-variable] mode_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { mode_t a;; return 0; } mode_t found Checking for type: off_t Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.types/conftest.o -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-LDoAyU/config.types/conftest.c: In function 'main': /tmp/petsc-LDoAyU/config.types/conftest.c:11:7: warning: unused variable 'a' [-Wunused-variable] off_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { off_t a;; return 0; } off_t found ================================================================================ TEST checkIntegerTypes from config.types(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/types.py:60) TESTING: checkIntegerTypes from config.types(config/BuildSystem/config/types.py:60) Checks for types associated with integers, such as int32_t. Checking for type: int32_t Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.types/conftest.o -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-LDoAyU/config.types/conftest.c: In function 'main': /tmp/petsc-LDoAyU/config.types/conftest.c:11:9: warning: unused variable 'a' [-Wunused-variable] int32_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { int32_t a;; return 0; } int32_t found ================================================================================ TEST checkPID from config.types(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/types.py:71) TESTING: checkPID from config.types(config/BuildSystem/config/types.py:71) Checks for pid_t, and defines it if necessary Checking for type: pid_t Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.types/conftest.o -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-LDoAyU/config.types/conftest.c: In function 'main': /tmp/petsc-LDoAyU/config.types/conftest.c:11:7: warning: unused variable 'a' [-Wunused-variable] pid_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { pid_t a;; return 0; } pid_t found ================================================================================ TEST checkUID from config.types(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/types.py:75) TESTING: checkUID from config.types(config/BuildSystem/config/types.py:75) Checks for uid_t and gid_t, and defines them if necessary Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.types/conftest.c ================================================================================ TEST checkC99Complex from config.types(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/types.py:82) TESTING: checkC99Complex from config.types(config/BuildSystem/config/types.py:82) Check for complex numbers in in C99 std Note that since PETSc source code uses _Complex we test specifically for that, not complex Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.types/conftest.o -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-LDoAyU/config.types/conftest.c: In function 'main': /tmp/petsc-LDoAyU/config.types/conftest.c:6:17: warning: variable 'x' set but not used [-Wunused-but-set-variable] double _Complex x; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.types/conftest.o -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-LDoAyU/config.types/conftest.c: In function 'main': /tmp/petsc-LDoAyU/config.types/conftest.c:6:17: warning: variable 'x' set but not used [-Wunused-but-set-variable] double _Complex x; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.types/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.types/conftest.o -lstdc++ -ldl Defined "HAVE_C99_COMPLEX" to "1" ================================================================================ TEST checkCxxComplex from config.types(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/types.py:93) TESTING: checkCxxComplex from config.types(config/BuildSystem/config/types.py:93) Check for complex numbers in namespace std Executing: mpicxx -c -o /tmp/petsc-LDoAyU/config.types/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.types/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { std::complex x; ; return 0; } Executing: mpicxx -o /tmp/petsc-LDoAyU/config.types/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.types/conftest.o -lstdc++ -ldl Defined "HAVE_CXX_COMPLEX" to "1" ================================================================================ TEST checkConst from config.types(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/types.py:126) TESTING: checkConst from config.types(config/BuildSystem/config/types.py:126) Checks for working const, and if not found defines it to empty string Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.types/conftest.o -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-LDoAyU/config.types/conftest.c: In function 'main': /tmp/petsc-LDoAyU/config.types/conftest.c:25:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (x[0]); ^~ /tmp/petsc-LDoAyU/config.types/conftest.c:26:5: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the 'if' { /* SCO 3.2v4 cc rejects this. */ ^ /tmp/petsc-LDoAyU/config.types/conftest.c:30:9: warning: 't' is used uninitialized in this function [-Wuninitialized] *t++ = 0; ~^~ /tmp/petsc-LDoAyU/config.types/conftest.c:46:25: warning: 'b' is used uninitialized in this function [-Wuninitialized] struct s *b; b->j = 5; ~~~~~^~~ Source: #include "confdefs.h" #include "conffix.h" int main() { /* Ultrix mips cc rejects this. */ typedef int charset[2]; const charset x; /* SunOS 4.1.1 cc rejects this. */ char const *const *ccp; char **p; /* NEC SVR4.0.2 mips cc rejects this. */ struct point {int x, y;}; static struct point const zero = {0,0}; /* AIX XL C 1.02.0.0 rejects this. It does not let you subtract one const X* pointer from another in an arm of an if-expression whose if-part is not a constant expression */ const char *g = "string"; ccp = &g + (g ? g-g : 0); /* HPUX 7.0 cc rejects these. */ ++ccp; p = (char**) ccp; ccp = (char const *const *) p; /* This section avoids unused variable warnings */ if (zero.x); if (x[0]); { /* SCO 3.2v4 cc rejects this. */ char *t; char const *s = 0 ? (char *) 0 : (char const *) 0; *t++ = 0; if (*s); } { /* Someone thinks the Sun supposedly-ANSI compiler will reject this. */ int x[] = {25, 17}; const int *foo = &x[0]; ++foo; } { /* Sun SC1.0 ANSI compiler rejects this -- but not the above. */ typedef const int *iptr; iptr p = 0; ++p; } { /* AIX XL C 1.02.0.0 rejects this saying "k.c", line 2.27: 1506-025 (S) Operand must be a modifiable lvalue. */ struct s { int j; const int *ap[3]; }; struct s *b; b->j = 5; } { /* ULTRIX-32 V3.1 (Rev 9) vcc rejects this */ const int foo = 10; /* Get rid of unused variable warning */ if (foo); } ; return 0; } ================================================================================ TEST checkSizeof from config.types(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/types.py:182) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:182) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: short Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.types/conftest.o -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(short)==2)*2-1]; Defined "SIZEOF_SHORT" to "2" ================================================================================ TEST checkSizeof from config.types(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/types.py:182) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:182) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: int Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.types/conftest.o -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(int)==4)*2-1]; Defined "SIZEOF_INT" to "4" ================================================================================ TEST checkSizeof from config.types(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/types.py:182) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:182) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: enum Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.types/conftest.o -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(enum{ENUM_DUMMY})==4)*2-1]; Defined "SIZEOF_ENUM" to "4" ================================================================================ TEST checkSizeof from config.types(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/types.py:182) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:182) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.types/conftest.o -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(long)==8)*2-1]; Defined "SIZEOF_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/types.py:182) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:182) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: void * Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.types/conftest.o -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(void *)==8)*2-1]; Defined "SIZEOF_VOID_P" to "8" ================================================================================ TEST checkSizeof from config.types(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/types.py:182) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:182) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long long Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.types/conftest.o -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(long long)==8)*2-1]; Defined "SIZEOF_LONG_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/types.py:182) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:182) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: size_t Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.types/conftest.o -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(size_t)==8)*2-1]; Defined "SIZEOF_SIZE_T" to "8" ================================================================================ TEST checkVisibility from config.types(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/types.py:216) TESTING: checkVisibility from config.types(config/BuildSystem/config/types.py:216) Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.types/conftest.o -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { __attribute__((visibility ("default"))) int foo(void);; return 0; } Defined "USE_VISIBILITY_C" to "1" Executing: mpicxx -c -o /tmp/petsc-LDoAyU/config.types/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.types/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { __attribute__((visibility ("default"))) int foo(void);; return 0; } Defined "USE_VISIBILITY_CXX" to "1" child config.types 2.465375 ================================================================================ TEST configureMemAlign from PETSc.options.memAlign(/autofs/nccs-svm1_home1/adams/petsc/config/PETSc/options/memAlign.py:29) TESTING: configureMemAlign from PETSc.options.memAlign(config/PETSc/options/memAlign.py:29) Choose alignment Defined "MEMALIGN" to "16" Memory alignment is 16 child PETSc.options.memAlign 0.000812 ================================================================================ TEST check from config.libraries(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.libraries/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.libraries/conftest.o -lfpe -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lfpe /usr/bin/sha1sum: /tmp/petsc-LDoAyU/config.libraries/conftest: No such file or directory collect2: error: ld returned 1 exit status ================================================================================ TEST check from config.libraries(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.libraries/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.libraries/conftest.o -lsocket -lnsl -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lsocket /usr/bin/sha1sum: /tmp/petsc-LDoAyU/config.libraries/conftest: No such file or directory collect2: error: ld returned 1 exit status ================================================================================ TEST check from config.libraries(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.libraries/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.libraries/conftest.o -lfpe -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lfpe /usr/bin/sha1sum: /tmp/petsc-LDoAyU/config.libraries/conftest: No such file or directory collect2: error: ld returned 1 exit status ================================================================================ TEST check from config.libraries(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.libraries/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.libraries/conftest.o -lsocket -lnsl -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: cannot find -lsocket /usr/bin/sha1sum: /tmp/petsc-LDoAyU/config.libraries/conftest: No such file or directory collect2: error: ld returned 1 exit status ================================================================================ TEST checkMath from config.libraries(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/libraries.py:264) TESTING: checkMath from config.libraries(config/BuildSystem/config/libraries.py:264) Check for sin() in libm, the math library Checking for functions [sin floor log10 pow] in library [''] [] Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.libraries/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include double sin(double); static void _check_sin() { double x,y; scanf("%lf",&x); y = sin(x); printf("%f",y); ; } #include double floor(double); static void _check_floor() { double x,y; scanf("%lf",&x); y = floor(x); printf("%f",y); ; } #include double log10(double); static void _check_log10() { double x,y; scanf("%lf",&x); y = log10(x); printf("%f",y); ; } #include double pow(double, double); static void _check_pow() { double x,y; scanf("%lf",&x); y = pow(x,x); printf("%f",y); ; } int main() { _check_sin(); _check_floor(); _check_log10(); _check_pow();; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.libraries/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /usr/bin/ld: /tmp/petsc-LDoAyU/config.libraries/conftest.o: undefined reference to symbol 'log10@@GLIBC_2.17' //usr/lib64/libm.so.6: error adding symbols: DSO missing from command line /usr/bin/sha1sum: /tmp/petsc-LDoAyU/config.libraries/conftest: No such file or directory collect2: error: ld returned 1 exit status Checking for functions [sin floor log10 pow] in library ['m'] [] Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.libraries/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include double sin(double); static void _check_sin() { double x,y; scanf("%lf",&x); y = sin(x); printf("%f",y); ; } #include double floor(double); static void _check_floor() { double x,y; scanf("%lf",&x); y = floor(x); printf("%f",y); ; } #include double log10(double); static void _check_log10() { double x,y; scanf("%lf",&x); y = log10(x); printf("%f",y); ; } #include double pow(double, double); static void _check_pow() { double x,y; scanf("%lf",&x); y = pow(x,x); printf("%f",y); ; } int main() { _check_sin(); _check_floor(); _check_log10(); _check_pow();; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.libraries/conftest.o -lm -lstdc++ -ldl Defined "HAVE_LIBM" to "1" CheckMath: using math library ['libm.a'] ================================================================================ TEST checkMathErf from config.libraries(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/libraries.py:283) TESTING: checkMathErf from config.libraries(config/BuildSystem/config/libraries.py:283) Check for erf() in libm, the math library Checking for functions [erf] in library ['libm.a'] [] Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.libraries/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-LDoAyU/config.libraries/conftest.c: In function '_check_erf': /tmp/petsc-LDoAyU/config.libraries/conftest.c:5:74: warning: variable 'y' set but not used [-Wunused-but-set-variable] static void _check_erf() { double (*checkErf)(double) = erf;double x = 0,y; y = (*checkErf)(x); } ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_erf() { double (*checkErf)(double) = erf;double x = 0,y; y = (*checkErf)(x); } int main() { _check_erf();; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.libraries/conftest.o -lm -lstdc++ -ldl Defined "HAVE_LIBM" to "1" erf() found Defined "HAVE_ERF" to "1" ================================================================================ TEST checkMathTgamma from config.libraries(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/libraries.py:292) TESTING: checkMathTgamma from config.libraries(config/BuildSystem/config/libraries.py:292) Check for tgamma() in libm, the math library Checking for functions [tgamma] in library ['libm.a'] [] Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.libraries/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-LDoAyU/config.libraries/conftest.c: In function '_check_tgamma': /tmp/petsc-LDoAyU/config.libraries/conftest.c:5:83: warning: variable 'y' set but not used [-Wunused-but-set-variable] static void _check_tgamma() { double (*checkTgamma)(double) = tgamma;double x = 0,y; y = (*checkTgamma)(x); } ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_tgamma() { double (*checkTgamma)(double) = tgamma;double x = 0,y; y = (*checkTgamma)(x); } int main() { _check_tgamma();; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.libraries/conftest.o -lm -lstdc++ -ldl Defined "HAVE_LIBM" to "1" tgamma() found Defined "HAVE_TGAMMA" to "1" ================================================================================ TEST checkMathFenv from config.libraries(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/libraries.py:301) TESTING: checkMathFenv from config.libraries(config/BuildSystem/config/libraries.py:301) Checks if can be used with FE_DFL_ENV Checking for functions [fesetenv] in library ['libm.a'] [] Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.libraries/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_fesetenv() { fesetenv(FE_DFL_ENV);; } int main() { _check_fesetenv();; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.libraries/conftest.o -lm -lstdc++ -ldl Defined "HAVE_LIBM" to "1" Defined "HAVE_FENV_H" to "1" ================================================================================ TEST checkMathLog2 from config.libraries(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/libraries.py:309) TESTING: checkMathLog2 from config.libraries(config/BuildSystem/config/libraries.py:309) Check for log2() in libm, the math library Checking for functions [log2] in library ['libm.a'] [] Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.libraries/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-LDoAyU/config.libraries/conftest.c: In function '_check_log2': /tmp/petsc-LDoAyU/config.libraries/conftest.c:5:81: warning: unused variable 'y' [-Wunused-variable] static void _check_log2() { double (*checkLog2)(double) = log2; double x = 2.5, y = (*checkLog2)(x); } ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_log2() { double (*checkLog2)(double) = log2; double x = 2.5, y = (*checkLog2)(x); } int main() { _check_log2();; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.libraries/conftest.o -lm -lstdc++ -ldl Defined "HAVE_LIBM" to "1" log2() found Defined "HAVE_LOG2" to "1" ================================================================================ TEST checkRealtime from config.libraries(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/libraries.py:318) TESTING: checkRealtime from config.libraries(config/BuildSystem/config/libraries.py:318) Check for presence of clock_gettime() in realtime library (POSIX Realtime extensions) Checking for functions [clock_gettime] in library [''] [] Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.libraries/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_clock_gettime() { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; } int main() { _check_clock_gettime();; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.libraries/conftest.o -lstdc++ -ldl realtime functions are linked in by default ================================================================================ TEST checkDynamic from config.libraries(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/libraries.py:334) TESTING: checkDynamic from config.libraries(config/BuildSystem/config/libraries.py:334) Check for the header and libraries necessary for dynamic library manipulation Checking for functions [dlopen] in library ['dl'] [] Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.libraries/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } int main() { _check_dlopen();; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.libraries/conftest.o -ldl -lstdc++ -ldl Defined "HAVE_LIBDL" to "1" Checking for header: dlfcn.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_DLFCN_H" to "1" child config.libraries 5.266049 ================================================================================ TEST configureLibraryOptions from PETSc.options.libraryOptions(/autofs/nccs-svm1_home1/adams/petsc/config/PETSc/options/libraryOptions.py:37) TESTING: configureLibraryOptions from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:37) Sets PETSC_USE_DEBUG, PETSC_USE_INFO, PETSC_USE_LOG, PETSC_USE_CTABLE, PETSC_USE_FORTRAN_KERNELS, and PETSC_USE_AVX512_KERNELS Defined "USE_LOG" to "1" Executing: mpicc -qversion Defined "USE_MALLOC_COALESCED" to "1" Defined "USE_INFO" to "1" Defined "USE_CTABLE" to "1" Defined "USE_BACKWARD_LOOP" to "1" **********Checking if running on BGL/IBM detected Checking for functions [bgl_perfctr_void] in library [''] [] Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.libraries/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char bgl_perfctr_void(); static void _check_bgl_perfctr_void() { bgl_perfctr_void(); } int main() { _check_bgl_perfctr_void();; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.libraries/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-LDoAyU/config.libraries/conftest.o: In function `_check_bgl_perfctr_void': /tmp/petsc-LDoAyU/config.libraries/conftest.c:5: undefined reference to `bgl_perfctr_void' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-LDoAyU/config.libraries/conftest' /usr/bin/sha1sum: /tmp/petsc-LDoAyU/config.libraries/conftest: No such file or directory collect2: error: ld returned 1 exit status Checking for functions [ADIOI_BGL_Open] in library [''] [] Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.libraries/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ADIOI_BGL_Open(); static void _check_ADIOI_BGL_Open() { ADIOI_BGL_Open(); } int main() { _check_ADIOI_BGL_Open();; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.libraries/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-LDoAyU/config.libraries/conftest.o: In function `_check_ADIOI_BGL_Open': /tmp/petsc-LDoAyU/config.libraries/conftest.c:5: undefined reference to `ADIOI_BGL_Open' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-LDoAyU/config.libraries/conftest' /usr/bin/sha1sum: /tmp/petsc-LDoAyU/config.libraries/conftest: No such file or directory collect2: error: ld returned 1 exit status *********BGL/IBM test failure Defined "USE_AVX512_KERNELS" to "1" Defined "Alignx(a,b)" to " " ================================================================================ TEST configureISColorValueType from PETSc.options.libraryOptions(/autofs/nccs-svm1_home1/adams/petsc/config/PETSc/options/libraryOptions.py:95) TESTING: configureISColorValueType from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:95) Sets PETSC_IS_COLOR_VALUE_TYPE, MPIU_COLORING_VALUE, IS_COLORING_MAX required by ISColor Defined "MPIU_COLORING_VALUE" to "MPI_UNSIGNED_SHORT" Defined "IS_COLORING_MAX" to "USHRT_MAX" Defined "IS_COLOR_VALUE_TYPE" to "short" Defined "IS_COLOR_VALUE_TYPE_F" to "integer2" child PETSc.options.libraryOptions 0.849855 child config.atomics 0.000008 ================================================================================ TEST checkSysinfo from config.functions(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/functions.py:106) TESTING: checkSysinfo from config.functions(config/BuildSystem/config/functions.py:106) Check whether sysinfo takes three arguments, and if it does define HAVE_SYSINFO_3ARG Checking for functions [sysinfo] All intermediate test results are stored in /tmp/petsc-LDoAyU/config.functions Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.functions/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysinfo(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sysinfo) || defined (__stub___sysinfo) sysinfo_will_always_fail_with_ENOSYS(); #else sysinfo(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_SYSINFO" to "1" Checking for header: sys/sysinfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_SYSINFO_H" to "1" Checking for header: sys/systeminfo.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-LDoAyU/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-LDoAyU/config.headers/conftest.c" # 1 "/tmp/petsc-LDoAyU/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-LDoAyU/config.headers/conftest.c" 2 # 1 "/tmp/petsc-LDoAyU/config.headers/conffix.h" 1 # 3 "/tmp/petsc-LDoAyU/config.headers/conftest.c" 2 stderr: /tmp/petsc-LDoAyU/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-LDoAyU/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-LDoAyU/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^compilation terminated.: Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.functions/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.functions/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-LDoAyU/config.functions/conftest.c:9:4: error: #error "Cannot check sysinfo without special headers" # error "Cannot check sysinfo without special headers" ^~~~~ /tmp/petsc-LDoAyU/config.functions/conftest.c: In function 'main': /tmp/petsc-LDoAyU/config.functions/conftest.c:13:30: warning: implicit declaration of function 'sysinfo' [-Wimplicit-function-declaration] char buf[10]; long count=10; sysinfo(1, buf, count); ^~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #ifdef HAVE_SYS_SYSINFO_H # include #elif defined(HAVE_SYS_SYSTEMINFO_H) # include #else # error "Cannot check sysinfo without special headers" #endif int main() { char buf[10]; long count=10; sysinfo(1, buf, count); ; return 0; } Compile failed inside link ================================================================================ TEST checkVPrintf from config.functions(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/functions.py:125) TESTING: checkVPrintf from config.functions(config/BuildSystem/config/functions.py:125) Checks whether vprintf requires a char * last argument, and if it does defines HAVE_VPRINTF_CHAR Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.functions/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-LDoAyU/config.functions/conftest.c: In function 'main': /tmp/petsc-LDoAyU/config.functions/conftest.c:8:1: warning: 'Argp' is used uninitialized in this function [-Wuninitialized] vprintf( "%d", Argp ); ^~~~~~~~~~~~~~~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vprintf( "%d", Argp ); ; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.functions/conftest.o -lstdc++ -ldl ================================================================================ TEST checkVFPrintf from config.functions(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/functions.py:131) TESTING: checkVFPrintf from config.functions(config/BuildSystem/config/functions.py:131) Checks whether vfprintf requires a char * last argument, and if it does defines HAVE_VFPRINTF_CHAR Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.functions/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-LDoAyU/config.functions/conftest.c: In function 'main': /tmp/petsc-LDoAyU/config.functions/conftest.c:8:1: warning: 'Argp' is used uninitialized in this function [-Wuninitialized] vfprintf(stdout, "%d", Argp ); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vfprintf(stdout, "%d", Argp ); ; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.functions/conftest.o -lstdc++ -ldl ================================================================================ TEST checkVSNPrintf from config.functions(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/functions.py:137) TESTING: checkVSNPrintf from config.functions(config/BuildSystem/config/functions.py:137) Checks whether vsnprintf requires a char * last argument, and if it does defines HAVE_VSNPRINTF_CHAR Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.functions/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-LDoAyU/config.functions/conftest.c: In function 'main': /tmp/petsc-LDoAyU/config.functions/conftest.c:8:1: warning: 'Argp' is used uninitialized in this function [-Wuninitialized] vsnprintf(str,5, "%d", Argp ); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp;char str[6]; vsnprintf(str,5, "%d", Argp ); ; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_VSNPRINTF" to "1" ================================================================================ TEST checkNanosleep from config.functions(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/functions.py:167) TESTING: checkNanosleep from config.functions(config/BuildSystem/config/functions.py:167) Check for functional nanosleep() - as time.h behaves differently for different compiler flags - like -std=c89 Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.functions/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { struct timespec tp; tp.tv_sec = 0; tp.tv_nsec = (long)(1e9); nanosleep(&tp,0); ; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_NANOSLEEP" to "1" ================================================================================ TEST checkMemmove from config.functions(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/functions.py:173) TESTING: checkMemmove from config.functions(config/BuildSystem/config/functions.py:173) Check for functional memmove() - as MS VC requires correct includes to for this test Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.functions/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { char c1[1], c2[1] = "c"; size_t n=1; memmove(c1,c2,n); ; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_MEMMOVE" to "1" ================================================================================ TEST checkSignalHandlerType from config.functions(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/functions.py:143) TESTING: checkSignalHandlerType from config.functions(config/BuildSystem/config/functions.py:143) Checks the type of C++ signals handlers, and defines SIGNAL_CAST to the correct value Executing: mpicxx -c -o /tmp/petsc-LDoAyU/config.functions/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.functions/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include static void myhandler(int sig) {} int main() { signal(SIGFPE,myhandler); ; return 0; } Executing: mpicxx -o /tmp/petsc-LDoAyU/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.functions/conftest.o -lstdc++ -ldl Defined "SIGNAL_CAST" to " " ================================================================================ TEST checkFreeReturnType from config.functions(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/functions.py:153) TESTING: checkFreeReturnType from config.functions(config/BuildSystem/config/functions.py:153) Checks whether free returns void or int, and defines HAVE_FREE_RETURN_INT Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.functions/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.functions/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-LDoAyU/config.functions/conftest.c: In function 'main': /tmp/petsc-LDoAyU/config.functions/conftest.c:6:25: error: void value not ignored as it ought to be int ierr; void *p; ierr = free(p); return 0; ^ /tmp/petsc-LDoAyU/config.functions/conftest.c:6:5: warning: variable 'ierr' set but not used [-Wunused-but-set-variable] int ierr; void *p; ierr = free(p); return 0; ^~~~ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ierr; void *p; ierr = free(p); return 0; ; return 0; } Compile failed inside link ================================================================================ TEST checkVariableArgumentLists from config.functions(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/functions.py:159) TESTING: checkVariableArgumentLists from config.functions(config/BuildSystem/config/functions.py:159) Checks whether the variable argument list functionality is working Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.functions/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { va_list l1, l2; va_copy(l1, l2); return 0; ; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_VA_COPY" to "1" ================================================================================ TEST checkClassify from config.functions(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/functions.py:85) TESTING: checkClassify from config.functions(config/BuildSystem/config/functions.py:85) Recursive decompose to rapidly classify functions as found or missing To confirm that a function is missing, we require a compile/link failure with only that function in a compilation unit. In contrast, we can confirm that many functions are present by compiling them all together in a large compilation unit. We optimistically compile everything together, then trim all functions that were named in the error message and bisect the result. The trimming is only an optimization to increase the likelihood of a big-batch compile succeeding; we do not rely on the compiler naming missing functions. Checking for functions [rand getdomainname _access snprintf realpath dlsym bzero _getcwd getwd uname _lseek sleep _sleep lseek usleep dlclose gethostname clock access _snprintf dlerror fork getpagesize sbreak memalign getcwd gethostbyname readlink _set_output_format PXFGETARG strcasecmp dlopen drand48 socket popen getrusage _mkdir time stricmp] Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.functions/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-LDoAyU/config.functions/conftest.c:16:6: warning: conflicting types for built-in function 'snprintf' char snprintf(); ^~~~~~~~ /tmp/petsc-LDoAyU/config.functions/conftest.c:19:6: warning: conflicting types for built-in function 'bzero' char bzero(); ^~~~~ /tmp/petsc-LDoAyU/config.functions/conftest.c:34:6: warning: conflicting types for built-in function 'fork' char fork(); ^~~~ /tmp/petsc-LDoAyU/config.functions/conftest.c:43:6: warning: conflicting types for built-in function 'strcasecmp' char strcasecmp(); ^~~~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char _access(); char snprintf(); char realpath(); char dlsym(); char bzero(); char _getcwd(); char getwd(); char uname(); char _lseek(); char sleep(); char _sleep(); char lseek(); char usleep(); char dlclose(); char gethostname(); char clock(); char access(); char _snprintf(); char dlerror(); char fork(); char getpagesize(); char sbreak(); char memalign(); char getcwd(); char gethostbyname(); char readlink(); char _set_output_format(); char PXFGETARG(); char strcasecmp(); char dlopen(); char drand48(); char socket(); char popen(); char getrusage(); char _mkdir(); char time(); char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub__mkdir) || defined (__stub____mkdir) _mkdir_will_always_fail_with_ENOSYS(); #else _mkdir(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-LDoAyU/config.functions/conftest.o: In function `main': /tmp/petsc-LDoAyU/config.functions/conftest.c:110: warning: the `getwd' function is dangerous and should not be used. /tmp/petsc-LDoAyU/config.functions/conftest.c:74: undefined reference to `_access' /tmp/petsc-LDoAyU/config.functions/conftest.c:104: undefined reference to `_getcwd' /tmp/petsc-LDoAyU/config.functions/conftest.c:122: undefined reference to `_lseek' /tmp/petsc-LDoAyU/config.functions/conftest.c:134: undefined reference to `_sleep' /tmp/petsc-LDoAyU/config.functions/conftest.c:176: undefined reference to `_snprintf' /tmp/petsc-LDoAyU/config.functions/conftest.c:200: undefined reference to `sbreak' /tmp/petsc-LDoAyU/config.functions/conftest.c:230: undefined reference to `_set_output_format' /tmp/petsc-LDoAyU/config.functions/conftest.c:236: undefined reference to `PXFGETARG' /tmp/petsc-LDoAyU/config.functions/conftest.c:278: undefined reference to `_mkdir' /tmp/petsc-LDoAyU/config.functions/conftest.c:290: undefined reference to `stricmp' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-LDoAyU/config.functions/conftest' /usr/bin/sha1sum: /tmp/petsc-LDoAyU/config.functions/conftest: No such file or directory collect2: error: ld returned 1 exit status Checking for functions [rand getdomainname realpath dlsym bzero uname usleep dlclose gethostname clock dlerror] Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.functions/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-LDoAyU/config.functions/conftest.c:17:6: warning: conflicting types for built-in function 'bzero' char bzero(); ^~~~~ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char realpath(); char dlsym(); char bzero(); char uname(); char usleep(); char dlclose(); char gethostname(); char clock(); char dlerror(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_RAND" to "1" Defined "HAVE_GETDOMAINNAME" to "1" Defined "HAVE_REALPATH" to "1" Defined "HAVE_DLSYM" to "1" Defined "HAVE_BZERO" to "1" Defined "HAVE_UNAME" to "1" Defined "HAVE_USLEEP" to "1" Defined "HAVE_DLCLOSE" to "1" Defined "HAVE_GETHOSTNAME" to "1" Defined "HAVE_CLOCK" to "1" Defined "HAVE_DLERROR" to "1" Checking for functions [fork getpagesize memalign gethostbyname readlink strcasecmp dlopen drand48 socket popen getrusage time] Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.functions/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-LDoAyU/config.functions/conftest.c:13:6: warning: conflicting types for built-in function 'fork' char fork(); ^~~~ /tmp/petsc-LDoAyU/config.functions/conftest.c:18:6: warning: conflicting types for built-in function 'strcasecmp' char strcasecmp(); ^~~~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fork(); char getpagesize(); char memalign(); char gethostbyname(); char readlink(); char strcasecmp(); char dlopen(); char drand48(); char socket(); char popen(); char getrusage(); char time(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_FORK" to "1" Defined "HAVE_GETPAGESIZE" to "1" Defined "HAVE_MEMALIGN" to "1" Defined "HAVE_GETHOSTBYNAME" to "1" Defined "HAVE_READLINK" to "1" Defined "HAVE_STRCASECMP" to "1" Defined "HAVE_DLOPEN" to "1" Defined "HAVE_DRAND48" to "1" Defined "HAVE_SOCKET" to "1" Defined "HAVE_POPEN" to "1" Defined "HAVE_GETRUSAGE" to "1" Defined "HAVE_TIME" to "1" Checking for functions [_access] Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.functions/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-LDoAyU/config.functions/conftest.o: In function `main': /tmp/petsc-LDoAyU/config.functions/conftest.c:24: undefined reference to `_access' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-LDoAyU/config.functions/conftest' /usr/bin/sha1sum: /tmp/petsc-LDoAyU/config.functions/conftest: No such file or directory collect2: error: ld returned 1 exit status Checking for functions [snprintf] Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.functions/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-LDoAyU/config.functions/conftest.c:13:6: warning: conflicting types for built-in function 'snprintf' char snprintf(); ^~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_SNPRINTF" to "1" Checking for functions [_getcwd] Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.functions/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-LDoAyU/config.functions/conftest.o: In function `main': /tmp/petsc-LDoAyU/config.functions/conftest.c:24: undefined reference to `_getcwd' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-LDoAyU/config.functions/conftest' /usr/bin/sha1sum: /tmp/petsc-LDoAyU/config.functions/conftest: No such file or directory collect2: error: ld returned 1 exit status Checking for functions [getwd] Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.functions/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: stderr: /tmp/petsc-LDoAyU/config.functions/conftest.o: In function `main': /tmp/petsc-LDoAyU/config.functions/conftest.c:24: warning: the `getwd' function is dangerous and should not be used. Defined "HAVE_GETWD" to "1" Checking for functions [_lseek] Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.functions/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-LDoAyU/config.functions/conftest.o: In function `main': /tmp/petsc-LDoAyU/config.functions/conftest.c:24: undefined reference to `_lseek' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-LDoAyU/config.functions/conftest' /usr/bin/sha1sum: /tmp/petsc-LDoAyU/config.functions/conftest: No such file or directory collect2: error: ld returned 1 exit status Checking for functions [sleep] Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.functions/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_SLEEP" to "1" Checking for functions [_sleep] Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.functions/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-LDoAyU/config.functions/conftest.o: In function `main': /tmp/petsc-LDoAyU/config.functions/conftest.c:24: undefined reference to `_sleep' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-LDoAyU/config.functions/conftest' /usr/bin/sha1sum: /tmp/petsc-LDoAyU/config.functions/conftest: No such file or directory collect2: error: ld returned 1 exit status Checking for functions [lseek] Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.functions/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_LSEEK" to "1" Checking for functions [access] Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.functions/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_ACCESS" to "1" Checking for functions [_snprintf] Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.functions/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-LDoAyU/config.functions/conftest.o: In function `main': /tmp/petsc-LDoAyU/config.functions/conftest.c:24: undefined reference to `_snprintf' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-LDoAyU/config.functions/conftest' /usr/bin/sha1sum: /tmp/petsc-LDoAyU/config.functions/conftest: No such file or directory collect2: error: ld returned 1 exit status Checking for functions [sbreak] Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.functions/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-LDoAyU/config.functions/conftest.o: In function `main': /tmp/petsc-LDoAyU/config.functions/conftest.c:24: undefined reference to `sbreak' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-LDoAyU/config.functions/conftest' /usr/bin/sha1sum: /tmp/petsc-LDoAyU/config.functions/conftest: No such file or directory collect2: error: ld returned 1 exit status Checking for functions [getcwd] Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.functions/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_GETCWD" to "1" Checking for functions [_set_output_format] Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.functions/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _set_output_format(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-LDoAyU/config.functions/conftest.o: In function `main': /tmp/petsc-LDoAyU/config.functions/conftest.c:24: undefined reference to `_set_output_format' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-LDoAyU/config.functions/conftest' /usr/bin/sha1sum: /tmp/petsc-LDoAyU/config.functions/conftest: No such file or directory collect2: error: ld returned 1 exit status Checking for functions [PXFGETARG] Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.functions/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-LDoAyU/config.functions/conftest.o: In function `main': /tmp/petsc-LDoAyU/config.functions/conftest.c:24: undefined reference to `PXFGETARG' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-LDoAyU/config.functions/conftest' /usr/bin/sha1sum: /tmp/petsc-LDoAyU/config.functions/conftest: No such file or directory collect2: error: ld returned 1 exit status Checking for functions [_mkdir] Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.functions/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _mkdir(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__mkdir) || defined (__stub____mkdir) _mkdir_will_always_fail_with_ENOSYS(); #else _mkdir(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-LDoAyU/config.functions/conftest.o: In function `main': /tmp/petsc-LDoAyU/config.functions/conftest.c:24: undefined reference to `_mkdir' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-LDoAyU/config.functions/conftest' /usr/bin/sha1sum: /tmp/petsc-LDoAyU/config.functions/conftest: No such file or directory collect2: error: ld returned 1 exit status Checking for functions [stricmp] Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.functions/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.functions/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-LDoAyU/config.functions/conftest.o: In function `main': /tmp/petsc-LDoAyU/config.functions/conftest.c:24: undefined reference to `stricmp' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-LDoAyU/config.functions/conftest' /usr/bin/sha1sum: /tmp/petsc-LDoAyU/config.functions/conftest: No such file or directory collect2: error: ld returned 1 exit status ================================================================================ TEST checkMmap from config.functions(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/functions.py:179) TESTING: checkMmap from config.functions(config/BuildSystem/config/functions.py:179) Check for functional mmap() to allocate shared memory and define HAVE_MMAP Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.functions/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { int fd; fd=open("/tmp/file",O_RDWR); mmap((void*)0,100,PROT_READ|PROT_WRITE,MAP_SHARED,fd,0); ; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.functions/conftest.o -lstdc++ -ldl Defined "HAVE_MMAP" to "1" child config.functions 12.244639 ================================================================================ TEST configureMemorySize from config.utilities.getResidentSetSize(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/utilities/getResidentSetSize.py:31) TESTING: configureMemorySize from config.utilities.getResidentSetSize(config/BuildSystem/config/utilities/getResidentSetSize.py:31) Try to determine how to measure the memory usage Defined "USE_PROC_FOR_SIZE" to "1" Using /proc for PetscMemoryGetCurrentUsage() child config.utilities.getResidentSetSize 0.000992 child config.utilities.fortranCommandLine 0.000005 ================================================================================ TEST configureFeatureTestMacros from config.utilities.featureTestMacros(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/utilities/featureTestMacros.py:13) TESTING: configureFeatureTestMacros from config.utilities.featureTestMacros(config/BuildSystem/config/utilities/featureTestMacros.py:13) Checks if certain feature test macros are support All intermediate test results are stored in /tmp/petsc-LDoAyU/config.utilities.featureTestMacros Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.utilities.featureTestMacros/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-LDoAyU/config.utilities.featureTestMacros/conftest.c:4:20: fatal error: sysctl.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #define _POSIX_C_SOURCE 200112L #include int main() { ; return 0; } Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #include int main() { ; return 0; } Defined "_BSD_SOURCE" to "1" Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _DEFAULT_SOURCE #include int main() { ; return 0; } Defined "_DEFAULT_SOURCE" to "1" Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include int main() { cpu_set_t mset; CPU_ZERO(&mset);; return 0; } Defined "_GNU_SOURCE" to "1" child config.utilities.featureTestMacros 0.410115 ================================================================================ TEST configureMissingUtypeTypedefs from config.utilities.missing(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/utilities/missing.py:55) TESTING: configureMissingUtypeTypedefs from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:55) Checks if u_short is undefined All intermediate test results are stored in /tmp/petsc-LDoAyU/config.utilities.missing Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.utilities.missing/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-LDoAyU/config.utilities.missing/conftest.c: In function 'main': /tmp/petsc-LDoAyU/config.utilities.missing/conftest.c:6:9: warning: unused variable 'foo' [-Wunused-variable] u_short foo; ^~~ Source: #include "confdefs.h" #include "conffix.h" #include int main() { u_short foo; ; return 0; } ================================================================================ TEST configureMissingFunctions from config.utilities.missing(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/utilities/missing.py:61) TESTING: configureMissingFunctions from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:61) Checks for SOCKETS ================================================================================ TEST configureMissingSignals from config.utilities.missing(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/utilities/missing.py:79) TESTING: configureMissingSignals from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:79) Check for missing signals, and define MISSING_ if necessary Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.utilities.missing/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGABRT; if (i); ; return 0; } Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.utilities.missing/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGALRM; if (i); ; return 0; } Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.utilities.missing/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGBUS; if (i); ; return 0; } Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.utilities.missing/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCHLD; if (i); ; return 0; } Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.utilities.missing/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCONT; if (i); ; return 0; } Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.utilities.missing/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGFPE; if (i); ; return 0; } Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.utilities.missing/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGHUP; if (i); ; return 0; } Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.utilities.missing/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGILL; if (i); ; return 0; } Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.utilities.missing/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGINT; if (i); ; return 0; } Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.utilities.missing/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGKILL; if (i); ; return 0; } Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.utilities.missing/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGPIPE; if (i); ; return 0; } Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.utilities.missing/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGQUIT; if (i); ; return 0; } Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.utilities.missing/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSEGV; if (i); ; return 0; } Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.utilities.missing/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSTOP; if (i); ; return 0; } Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.utilities.missing/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSYS; if (i); ; return 0; } Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.utilities.missing/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTERM; if (i); ; return 0; } Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.utilities.missing/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTRAP; if (i); ; return 0; } Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.utilities.missing/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTSTP; if (i); ; return 0; } Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.utilities.missing/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGURG; if (i); ; return 0; } Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.utilities.missing/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR1; if (i); ; return 0; } Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.utilities.missing/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR2; if (i); ; return 0; } ================================================================================ TEST configureMissingGetdomainnamePrototype from config.utilities.missing(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/utilities/missing.py:96) TESTING: configureMissingGetdomainnamePrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:96) Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.utilities.missing/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Executing: mpicxx -c -o /tmp/petsc-LDoAyU/config.utilities.missing/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Executing: mpicxx -o /tmp/petsc-LDoAyU/config.utilities.missing/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.utilities.missing/conftest.o -lstdc++ -ldl ================================================================================ TEST configureMissingSrandPrototype from config.utilities.missing(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/utilities/missing.py:121) TESTING: configureMissingSrandPrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:121) Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.utilities.missing/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #include int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Executing: mpicxx -c -o /tmp/petsc-LDoAyU/config.utilities.missing/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #include int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Executing: mpicxx -o /tmp/petsc-LDoAyU/config.utilities.missing/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.utilities.missing/conftest.o -lstdc++ -ldl child config.utilities.missing 2.839919 ================================================================================ TEST configureFPTrap from config.utilities.FPTrap(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/utilities/FPTrap.py:27) TESTING: configureFPTrap from config.utilities.FPTrap(config/BuildSystem/config/utilities/FPTrap.py:27) Checking the handling of floating point traps Checking for header: sigfpe.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-LDoAyU/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-LDoAyU/config.headers/conftest.c" # 1 "/tmp/petsc-LDoAyU/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-LDoAyU/config.headers/conftest.c" 2 # 1 "/tmp/petsc-LDoAyU/config.headers/conffix.h" 1 # 3 "/tmp/petsc-LDoAyU/config.headers/conftest.c" 2 stderr: /tmp/petsc-LDoAyU/config.headers/conftest.c:3:20: fatal error: sigfpe.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-LDoAyU/config.headers/conftest.c:3:20: fatal error: sigfpe.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-LDoAyU/config.headers/conftest.c:3:20: fatal error: sigfpe.h: No such file or directory #include ^compilation terminated.: Checking for header: fpxcp.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-LDoAyU/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-LDoAyU/config.headers/conftest.c" # 1 "/tmp/petsc-LDoAyU/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-LDoAyU/config.headers/conftest.c" 2 # 1 "/tmp/petsc-LDoAyU/config.headers/conffix.h" 1 # 3 "/tmp/petsc-LDoAyU/config.headers/conftest.c" 2 stderr: /tmp/petsc-LDoAyU/config.headers/conftest.c:3:19: fatal error: fpxcp.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-LDoAyU/config.headers/conftest.c:3:19: fatal error: fpxcp.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-LDoAyU/config.headers/conftest.c:3:19: fatal error: fpxcp.h: No such file or directory #include ^compilation terminated.: Checking for header: floatingpoint.h Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-LDoAyU/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-LDoAyU/config.headers/conftest.c" # 1 "/tmp/petsc-LDoAyU/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-LDoAyU/config.headers/conftest.c" 2 # 1 "/tmp/petsc-LDoAyU/config.headers/conffix.h" 1 # 3 "/tmp/petsc-LDoAyU/config.headers/conftest.c" 2 stderr: /tmp/petsc-LDoAyU/config.headers/conftest.c:3:27: fatal error: floatingpoint.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-LDoAyU/config.headers/conftest.c:3:27: fatal error: floatingpoint.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-LDoAyU/config.headers/conftest.c:3:27: fatal error: floatingpoint.h: No such file or directory #include ^compilation terminated.: child config.utilities.FPTrap 0.134221 ================================================================================ TEST configureScalarType from PETSc.options.scalarTypes(/autofs/nccs-svm1_home1/adams/petsc/config/PETSc/options/scalarTypes.py:40) TESTING: configureScalarType from PETSc.options.scalarTypes(config/PETSc/options/scalarTypes.py:40) Choose between real and complex numbers Scalar type is real All intermediate test results are stored in /tmp/petsc-LDoAyU/PETSc.options.scalarTypes Executing: mpicc -c -o /tmp/petsc-LDoAyU/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/PETSc.options.scalarTypes -I/tmp/petsc-LDoAyU/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-LDoAyU/PETSc.options.scalarTypes/conftest.c: In function 'main': /tmp/petsc-LDoAyU/PETSc.options.scalarTypes/conftest.c:6:21: warning: unused variable 'a' [-Wunused-variable] double b = 2.0; int a = isnormal(b); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnormal(b); ; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/PETSc.options.scalarTypes/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/PETSc.options.scalarTypes/conftest.o -lstdc++ -ldl Defined "HAVE_ISNORMAL" to "1" Executing: mpicc -c -o /tmp/petsc-LDoAyU/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/config.utilities.missing -I/tmp/petsc-LDoAyU/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-LDoAyU/PETSc.options.scalarTypes/conftest.c: In function 'main': /tmp/petsc-LDoAyU/PETSc.options.scalarTypes/conftest.c:6:21: warning: unused variable 'a' [-Wunused-variable] double b = 2.0; int a = isnan(b); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnan(b); ; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/PETSc.options.scalarTypes/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/PETSc.options.scalarTypes/conftest.o -lstdc++ -ldl Defined "HAVE_ISNAN" to "1" Executing: mpicc -c -o /tmp/petsc-LDoAyU/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/config.utilities.missing -I/tmp/petsc-LDoAyU/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-LDoAyU/PETSc.options.scalarTypes/conftest.c: In function 'main': /tmp/petsc-LDoAyU/PETSc.options.scalarTypes/conftest.c:6:21: warning: unused variable 'a' [-Wunused-variable] double b = 2.0; int a = isinf(b); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isinf(b); ; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/PETSc.options.scalarTypes/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/PETSc.options.scalarTypes/conftest.o -lstdc++ -ldl Defined "HAVE_ISINF" to "1" ================================================================================ TEST configurePrecision from PETSc.options.scalarTypes(/autofs/nccs-svm1_home1/adams/petsc/config/PETSc/options/scalarTypes.py:81) TESTING: configurePrecision from PETSc.options.scalarTypes(config/PETSc/options/scalarTypes.py:81) Set the default real number precision for PETSc objects Checking C compiler works with __float128 Checking for functions [logq] in library ['quadmath'] [] Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.libraries/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/config.utilities.missing -I/tmp/petsc-LDoAyU/PETSc.options.scalarTypes -I/tmp/petsc-LDoAyU/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-LDoAyU/config.libraries/conftest.c:4:22: fatal error: quadmath.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_logq() { __float128 f; logq(f);; } int main() { _check_logq();; return 0; } Compile failed inside link Defined "USE_REAL_DOUBLE" to "1" Defined make macro "PETSC_SCALAR_SIZE" to "64" Precision is double child PETSc.options.scalarTypes 1.323988 ================================================================================ TEST configureMkdir from config.programs(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/programs.py:22) TESTING: configureMkdir from config.programs(config/BuildSystem/config/programs.py:22) Make sure we can have mkdir automatically make intermediate directories Checking for program /sw/sources/lsf-tools/2.0/summit/bin/mkdir...not found Checking for program /sw/summit/xalt/1.1.4/bin/mkdir...not found Checking for program /sw/summit/forge/19.1.4/bin/mkdir...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.0.1-20190611-cyaenjgora6now2nusxzkfli4mzjnudx/bin/mkdir...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.15.2-xit2o3iepxvqbyku77lwcugufilztu7t/bin/mkdir...not found Checking for program /sw/summit/gcc/6.4.0/bin/mkdir...not found Checking for program /sw/summit/cuda/10.1.168/bin/mkdir...not found Checking for program /usr/bin/mkdir...found Executing: /usr/bin/mkdir -p .conftest/tmp Adding -p flag to /usr/bin/mkdir -p to automatically create directories Defined make macro "MKDIR" to "/usr/bin/mkdir -p" ================================================================================ TEST configureAutoreconf from config.programs(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/programs.py:44) TESTING: configureAutoreconf from config.programs(config/BuildSystem/config/programs.py:44) Check for autoreconf Checking for program /sw/sources/lsf-tools/2.0/summit/bin/autoreconf...not found Checking for program /sw/summit/xalt/1.1.4/bin/autoreconf...not found Checking for program /sw/summit/forge/19.1.4/bin/autoreconf...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.0.1-20190611-cyaenjgora6now2nusxzkfli4mzjnudx/bin/autoreconf...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.15.2-xit2o3iepxvqbyku77lwcugufilztu7t/bin/autoreconf...not found Checking for program /sw/summit/gcc/6.4.0/bin/autoreconf...not found Checking for program /sw/summit/cuda/10.1.168/bin/autoreconf...not found Checking for program /usr/bin/autoreconf...found All intermediate test results are stored in /tmp/petsc-LDoAyU/config.programs Executing: ['/usr/bin/autoreconf'] autoreconf test successful! Checking for program /sw/sources/lsf-tools/2.0/summit/bin/libtoolize...not found Checking for program /sw/summit/xalt/1.1.4/bin/libtoolize...not found Checking for program /sw/summit/forge/19.1.4/bin/libtoolize...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.0.1-20190611-cyaenjgora6now2nusxzkfli4mzjnudx/bin/libtoolize...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.15.2-xit2o3iepxvqbyku77lwcugufilztu7t/bin/libtoolize...not found Checking for program /sw/summit/gcc/6.4.0/bin/libtoolize...not found Checking for program /sw/summit/cuda/10.1.168/bin/libtoolize...not found Checking for program /usr/bin/libtoolize...found ================================================================================ TEST configurePrograms from config.programs(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/programs.py:71) TESTING: configurePrograms from config.programs(config/BuildSystem/config/programs.py:71) Check for the programs needed to build and run PETSc Checking for program /sw/sources/lsf-tools/2.0/summit/bin/sh...not found Checking for program /sw/summit/xalt/1.1.4/bin/sh...not found Checking for program /sw/summit/forge/19.1.4/bin/sh...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.0.1-20190611-cyaenjgora6now2nusxzkfli4mzjnudx/bin/sh...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.15.2-xit2o3iepxvqbyku77lwcugufilztu7t/bin/sh...not found Checking for program /sw/summit/gcc/6.4.0/bin/sh...not found Checking for program /sw/summit/cuda/10.1.168/bin/sh...not found Checking for program /usr/bin/sh...found Defined make macro "SHELL" to "/usr/bin/sh" Checking for program /sw/sources/lsf-tools/2.0/summit/bin/sed...not found Checking for program /sw/summit/xalt/1.1.4/bin/sed...not found Checking for program /sw/summit/forge/19.1.4/bin/sed...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.0.1-20190611-cyaenjgora6now2nusxzkfli4mzjnudx/bin/sed...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.15.2-xit2o3iepxvqbyku77lwcugufilztu7t/bin/sed...not found Checking for program /sw/summit/gcc/6.4.0/bin/sed...not found Checking for program /sw/summit/cuda/10.1.168/bin/sed...not found Checking for program /usr/bin/sed...found Defined make macro "SED" to "/usr/bin/sed" Executing: /usr/bin/sed -i s/sed/sd/g "/tmp/petsc-LDoAyU/config.programs/sed1" Adding SEDINPLACE cmd: /usr/bin/sed -i Defined make macro "SEDINPLACE" to "/usr/bin/sed -i" Checking for program /sw/sources/lsf-tools/2.0/summit/bin/mv...not found Checking for program /sw/summit/xalt/1.1.4/bin/mv...not found Checking for program /sw/summit/forge/19.1.4/bin/mv...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.0.1-20190611-cyaenjgora6now2nusxzkfli4mzjnudx/bin/mv...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.15.2-xit2o3iepxvqbyku77lwcugufilztu7t/bin/mv...not found Checking for program /sw/summit/gcc/6.4.0/bin/mv...not found Checking for program /sw/summit/cuda/10.1.168/bin/mv...not found Checking for program /usr/bin/mv...found Defined make macro "MV" to "/usr/bin/mv" Checking for program /sw/sources/lsf-tools/2.0/summit/bin/cp...not found Checking for program /sw/summit/xalt/1.1.4/bin/cp...not found Checking for program /sw/summit/forge/19.1.4/bin/cp...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.0.1-20190611-cyaenjgora6now2nusxzkfli4mzjnudx/bin/cp...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.15.2-xit2o3iepxvqbyku77lwcugufilztu7t/bin/cp...not found Checking for program /sw/summit/gcc/6.4.0/bin/cp...not found Checking for program /sw/summit/cuda/10.1.168/bin/cp...not found Checking for program /usr/bin/cp...found Defined make macro "CP" to "/usr/bin/cp" Checking for program /sw/sources/lsf-tools/2.0/summit/bin/grep...not found Checking for program /sw/summit/xalt/1.1.4/bin/grep...not found Checking for program /sw/summit/forge/19.1.4/bin/grep...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.0.1-20190611-cyaenjgora6now2nusxzkfli4mzjnudx/bin/grep...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.15.2-xit2o3iepxvqbyku77lwcugufilztu7t/bin/grep...not found Checking for program /sw/summit/gcc/6.4.0/bin/grep...not found Checking for program /sw/summit/cuda/10.1.168/bin/grep...not found Checking for program /usr/bin/grep...found Defined make macro "GREP" to "/usr/bin/grep" Checking for program /sw/sources/lsf-tools/2.0/summit/bin/rm...not found Checking for program /sw/summit/xalt/1.1.4/bin/rm...not found Checking for program /sw/summit/forge/19.1.4/bin/rm...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.0.1-20190611-cyaenjgora6now2nusxzkfli4mzjnudx/bin/rm...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.15.2-xit2o3iepxvqbyku77lwcugufilztu7t/bin/rm...not found Checking for program /sw/summit/gcc/6.4.0/bin/rm...not found Checking for program /sw/summit/cuda/10.1.168/bin/rm...not found Checking for program /usr/bin/rm...found Defined make macro "RM" to "/usr/bin/rm -f" Checking for program /sw/sources/lsf-tools/2.0/summit/bin/diff...not found Checking for program /sw/summit/xalt/1.1.4/bin/diff...not found Checking for program /sw/summit/forge/19.1.4/bin/diff...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.0.1-20190611-cyaenjgora6now2nusxzkfli4mzjnudx/bin/diff...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.15.2-xit2o3iepxvqbyku77lwcugufilztu7t/bin/diff...not found Checking for program /sw/summit/gcc/6.4.0/bin/diff...not found Checking for program /sw/summit/cuda/10.1.168/bin/diff...not found Checking for program /usr/bin/diff...found Executing: "/usr/bin/diff" -w "/tmp/petsc-LDoAyU/config.programs/diff1" "/tmp/petsc-LDoAyU/config.programs/diff2" Defined make macro "DIFF" to "/usr/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /ccs/home/adams/petsc/lib/petsc/bin/win32fe/ps...not found Defined make macro "PYTHON" to "/usr/bin/python" Checking for program /sw/sources/lsf-tools/2.0/summit/bin/m4...not found Checking for program /sw/summit/xalt/1.1.4/bin/m4...not found Checking for program /sw/summit/forge/19.1.4/bin/m4...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.0.1-20190611-cyaenjgora6now2nusxzkfli4mzjnudx/bin/m4...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.15.2-xit2o3iepxvqbyku77lwcugufilztu7t/bin/m4...not found Checking for program /sw/summit/gcc/6.4.0/bin/m4...not found Checking for program /sw/summit/cuda/10.1.168/bin/m4...not found Checking for program /usr/bin/m4...found Defined make macro "M4" to "/usr/bin/m4" child config.programs 1.962732 ================================================================================ TEST configureMake from config.packages.make(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/packages/make.py:87) TESTING: configureMake from config.packages.make(config/BuildSystem/config/packages/make.py:87) Check Guesses for GNU make Executing: gmake --version stdout: GNU Make 3.82 Built for powerpc64le-redhat-linux-gnu Copyright (C) 2010 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. =============================================================================== ***** WARNING: You have an older version of Gnu make, it will work, but may not support all the parallel testing options. You can install the latest Gnu make with your package manager, such as brew or macports, or use the --download-make option to get the latest Gnu make ***** =============================================================================== Checking for program /sw/sources/lsf-tools/2.0/summit/bin/gmake...not found Checking for program /sw/summit/xalt/1.1.4/bin/gmake...not found Checking for program /sw/summit/forge/19.1.4/bin/gmake...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.0.1-20190611-cyaenjgora6now2nusxzkfli4mzjnudx/bin/gmake...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.15.2-xit2o3iepxvqbyku77lwcugufilztu7t/bin/gmake...not found Checking for program /sw/summit/gcc/6.4.0/bin/gmake...not found Checking for program /sw/summit/cuda/10.1.168/bin/gmake...not found Checking for program /usr/bin/gmake...found Defined make macro "MAKE" to "/usr/bin/gmake" ================================================================================ TEST setupGNUMake from config.packages.make(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/packages/make.py:121) TESTING: setupGNUMake from config.packages.make(config/BuildSystem/config/packages/make.py:121) Setup other GNU make stuff Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC})" and code [] Defined make rule "libcxx" with dependencies "${LIBNAME}(${OBJSCXX})" and code [] Defined make rule "libcu" with dependencies "${LIBNAME}(${OBJSCU})" and code [] Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} Defined make macro "OMAKE_PRINTDIR " to "/usr/bin/gmake --print-directory" Defined make macro "OMAKE" to "/usr/bin/gmake --no-print-directory" Defined make macro "MAKE_PAR_OUT_FLG" to "" ================================================================================ TEST configureMakeNP from config.packages.make(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/packages/make.py:168) TESTING: configureMakeNP from config.packages.make(config/BuildSystem/config/packages/make.py:168) check no of cores on the build machine [perhaps to do make '-j ncores'] module multiprocessing found 128 cores: using make_np = 59 Defined make macro "MAKE_NP" to "59" Defined make macro "MAKE_TEST_NP" to "49" Defined make macro "MAKE_LOAD" to "166.4" Defined make macro "NPMAX" to "128" child config.packages.make 0.049215 ================================================================================ TEST alternateConfigureLibrary from config.packages.OpenMPI(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py:917) TESTING: alternateConfigureLibrary from config.packages.OpenMPI(config/BuildSystem/config/package.py:917) Called if --with-packagename=0; does nothing by default child config.packages.OpenMPI 0.000732 Executing: uname -s stdout: Linux ================================================================================ TEST alternateConfigureLibrary from config.packages.MPICH(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py:917) TESTING: alternateConfigureLibrary from config.packages.MPICH(config/BuildSystem/config/package.py:917) Called if --with-packagename=0; does nothing by default child config.packages.MPICH 0.007882 ================================================================================ TEST checkDependencies from config.packages.MPI(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py:834) TESTING: checkDependencies from config.packages.MPI(config/BuildSystem/config/package.py:834) ================================================================================ TEST configureLibrary from config.packages.MPI(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/packages/MPI.py:587) TESTING: configureLibrary from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:587) ================================================================================== Checking for a functional MPI Checking for library in Compiler specific search MPI: [] ================================================================================ TEST check from config.libraries(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names ================================================================================ TEST check from config.libraries(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library [] [] Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.libraries/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/config.utilities.missing -I/tmp/petsc-LDoAyU/PETSc.options.scalarTypes -I/tmp/petsc-LDoAyU/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.libraries/conftest.o -lstdc++ -ldl No functions to check for in library [] [] Checking for headers Compiler specific search MPI: [] ================================================================================ TEST checkInclude from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['mpi.h'] in [] Checking include with compiler flags var CPPFLAGS [] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Found header files ['mpi.h'] in [] ================================================================================ TEST checkMPICHorOpenMPI from config.packages.MPI(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/packages/MPI.py:470) TESTING: checkMPICHorOpenMPI from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:470) Determine if MPICH_NUMVERSION or OMPI_MAJOR_VERSION exist in mpi.h Used for consistency checking of MPI installation at compile time All intermediate test results are stored in /tmp/petsc-LDoAyU/config.packages.MPI Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.packages.MPI/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/config.utilities.missing -I/tmp/petsc-LDoAyU/PETSc.options.scalarTypes -I/tmp/petsc-LDoAyU/config.packages.MPI -I/tmp/petsc-LDoAyU/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-LDoAyU/config.packages.MPI/conftest.c:4:25: error: 'I_MPI_VERSION' undeclared here (not in a function) const char *mpich_ver = I_MPI_VERSION; ^~~~~~~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #include const char *mpich_ver = I_MPI_VERSION; int main() { ; return 0; } Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.packages.MPI/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/config.utilities.missing -I/tmp/petsc-LDoAyU/PETSc.options.scalarTypes -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-LDoAyU/config.packages.MPI/conftest.c:4:17: error: 'I_MPI_NUMVERSION' undeclared here (not in a function) int mpich_ver = I_MPI_NUMVERSION; ^~~~~~~~~~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = I_MPI_NUMVERSION; int main() { ; return 0; } Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.packages.MPI/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/config.utilities.missing -I/tmp/petsc-LDoAyU/PETSc.options.scalarTypes -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-LDoAyU/config.packages.MPI/conftest.c:4:17: error: 'MVAPICH2_NUMVERSION' undeclared here (not in a function) int mpich_ver = MVAPICH2_NUMVERSION; ^~~~~~~~~~~~~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MVAPICH2_NUMVERSION; int main() { ; return 0; } Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.packages.MPI/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/config.utilities.missing -I/tmp/petsc-LDoAyU/PETSc.options.scalarTypes -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-LDoAyU/config.packages.MPI/conftest.c:4:17: error: 'MPICH_NUMVERSION' undeclared here (not in a function) int mpich_ver = MPICH_NUMVERSION; ^~~~~~~~~~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MPICH_NUMVERSION; int main() { ; return 0; } Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.packages.MPI/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/config.utilities.missing -I/tmp/petsc-LDoAyU/PETSc.options.scalarTypes -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int ompi_major = OMPI_MAJOR_VERSION; int ompi_minor = OMPI_MINOR_VERSION; int ompi_release = OMPI_RELEASE_VERSION; int main() { ; return 0; } Preprocessing source: #include "confdefs.h" #include "conffix.h" #include int ompi_major = OMPI_MAJOR_VERSION; int ompi_minor = OMPI_MINOR_VERSION; int ompi_release = OMPI_RELEASE_VERSION; Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.packages.MPI -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.packages.MPI/conftest.c Defined "HAVE_OMPI_MAJOR_VERSION" to "10" Defined "HAVE_OMPI_MINOR_VERSION" to "03" Defined "HAVE_OMPI_RELEASE_VERSION" to "00" ================================================================================ TEST configureMPI2 from config.packages.MPI(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/packages/MPI.py:252) TESTING: configureMPI2 from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:252) Check for functions added to the interface in MPI-2 Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.packages.MPI/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/config.utilities.missing -I/tmp/petsc-LDoAyU/PETSc.options.scalarTypes -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int flag;if (MPI_Finalized(&flag)); ; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_FINALIZED" to "1" Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.packages.MPI/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/config.utilities.missing -I/tmp/petsc-LDoAyU/PETSc.options.scalarTypes -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Allreduce(MPI_IN_PLACE,0, 1, MPI_INT, MPI_SUM, MPI_COMM_SELF)); ; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_IN_PLACE" to "1" Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.packages.MPI/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/config.utilities.missing -I/tmp/petsc-LDoAyU/PETSc.options.scalarTypes -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-LDoAyU/config.packages.MPI/conftest.c: In function 'main': /tmp/petsc-LDoAyU/config.packages.MPI/conftest.c:6:94: warning: initialization makes pointer from integer without a cast [-Wint-conversion] int count=2; int blocklens[2]={0,1}; MPI_Aint indices[2]={0,1}; MPI_Datatype old_types[2]={0,1}; MPI_Datatype *newtype = 0; ^ /tmp/petsc-LDoAyU/config.packages.MPI/conftest.c:6:94: note: (near initialization for 'old_types[1]') Source: #include "confdefs.h" #include "conffix.h" #include int main() { int count=2; int blocklens[2]={0,1}; MPI_Aint indices[2]={0,1}; MPI_Datatype old_types[2]={0,1}; MPI_Datatype *newtype = 0; if (MPI_Type_create_struct(count, blocklens, indices, old_types, newtype)); ; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.packages.MPI/conftest.o -lstdc++ -ldl Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.packages.MPI/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/config.utilities.missing -I/tmp/petsc-LDoAyU/PETSc.options.scalarTypes -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm_errhandler_fn * p_err_fun = 0; MPI_Errhandler * p_errhandler = 0; if (MPI_Comm_create_errhandler(p_err_fun,p_errhandler)); ; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.packages.MPI/conftest.o -lstdc++ -ldl Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.packages.MPI/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/config.utilities.missing -I/tmp/petsc-LDoAyU/PETSc.options.scalarTypes -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_set_errhandler(MPI_COMM_WORLD,MPI_ERRORS_RETURN)); ; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.packages.MPI/conftest.o -lstdc++ -ldl Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.packages.MPI/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/config.utilities.missing -I/tmp/petsc-LDoAyU/PETSc.options.scalarTypes -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Reduce_local(0, 0, 0, MPI_INT, MPI_SUM));; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_REDUCE_LOCAL" to "1" Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.packages.MPI/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/config.utilities.missing -I/tmp/petsc-LDoAyU/PETSc.options.scalarTypes -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { char version[MPI_MAX_LIBRARY_VERSION_STRING];int verlen;if (MPI_Get_library_version(version,&verlen)); ; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_GET_LIBRARY_VERSION" to "1" Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.packages.MPI/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/config.utilities.missing -I/tmp/petsc-LDoAyU/PETSc.options.scalarTypes -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int base[100]; MPI_Win win; if (MPI_Win_create(base,100,4,MPI_INFO_NULL,MPI_COMM_WORLD,&win)); ; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_WIN_CREATE" to "1" ================================================================================ TEST configureMPI3 from config.packages.MPI(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/packages/MPI.py:294) TESTING: configureMPI3 from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:294) Check for functions added to the interface in MPI-3 Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.packages.MPI/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/config.utilities.missing -I/tmp/petsc-LDoAyU/PETSc.options.scalarTypes -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm scomm; MPI_Aint size=128; int disp_unit=8,*baseptr; MPI_Win win; if (MPI_Comm_split_type(MPI_COMM_WORLD, MPI_COMM_TYPE_SHARED, 0, MPI_INFO_NULL, &scomm)); if (MPI_Win_allocate_shared(size,disp_unit,MPI_INFO_NULL,MPI_COMM_WORLD,&baseptr,&win)); if (MPI_Win_shared_query(win,0,&size,&disp_unit,&baseptr)); ; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_PROCESS_SHARED_MEMORY" to "1" Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.packages.MPI/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/config.utilities.missing -I/tmp/petsc-LDoAyU/PETSc.options.scalarTypes -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-LDoAyU/config.packages.MPI/conftest.c: In function 'main': /tmp/petsc-LDoAyU/config.packages.MPI/conftest.c:7:24: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (MPI_Iscatter(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); ^~ /tmp/petsc-LDoAyU/config.packages.MPI/conftest.c:8:25: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the 'if' if (MPI_Iscatterv(&send,counts,displs,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); ^~ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int send=0,recv,counts[2]={1,1},displs[2]={1,2}; MPI_Request req; if (MPI_Iscatter(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Iscatterv(&send,counts,displs,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Igather(&send,1,MPI_INT,&recv,1,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Igatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,0,MPI_COMM_WORLD,&req)); if (MPI_Iallgather(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); if (MPI_Iallgatherv(&send,1,MPI_INT,&recv,counts,displs,MPI_INT,MPI_COMM_WORLD,&req)); if (MPI_Ialltoall(&send,1,MPI_INT,&recv,1,MPI_INT,MPI_COMM_WORLD,&req)); ; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_NONBLOCKING_COLLECTIVES" to "1" Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.packages.MPI/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/config.utilities.missing -I/tmp/petsc-LDoAyU/PETSc.options.scalarTypes -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm distcomm; MPI_Request req; if (MPI_Dist_graph_create_adjacent(MPI_COMM_WORLD,0,0,MPI_WEIGHTS_EMPTY,0,0,MPI_WEIGHTS_EMPTY,MPI_INFO_NULL,0,&distcomm)); if (MPI_Neighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm)); if (MPI_Ineighbor_alltoallv(0,0,0,MPI_INT,0,0,0,MPI_INT,distcomm,&req)); ; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_NEIGHBORHOOD_COLLECTIVES" to "1" Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.packages.MPI/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/config.utilities.missing -I/tmp/petsc-LDoAyU/PETSc.options.scalarTypes -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 1 stderr: /tmp/petsc-LDoAyU/config.packages.MPI/conftest.c:7:3: error: #error This OpenMPI is not CUDA-aware #error This OpenMPI is not CUDA-aware ^~~~~ Source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(MPIX_CUDA_AWARE_SUPPORT) && MPIX_CUDA_AWARE_SUPPORT #else #error This OpenMPI is not CUDA-aware #endif int main() { ; return 0; } ================================================================================ TEST configureMPITypes from config.packages.MPI(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/packages/MPI.py:337) TESTING: configureMPITypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:337) Checking for MPI Datatype handles Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.packages.MPI/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/config.utilities.missing -I/tmp/petsc-LDoAyU/PETSc.options.scalarTypes -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_LONG_DOUBLE, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.packages.MPI/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/config.utilities.missing -I/tmp/petsc-LDoAyU/PETSc.options.scalarTypes -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_LONG_DOUBLE, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.packages.MPI/conftest.o -lstdc++ -ldl Testing executable /tmp/petsc-LDoAyU/config.packages.MPI/conftest to see if it can be run Executing: /tmp/petsc-LDoAyU/config.packages.MPI/conftest Executing: /tmp/petsc-LDoAyU/config.packages.MPI/conftest stdout: [1575409476.406194] [login1:118783:0] ib_dev.c:525 MXM ERROR Failed to open mlx5_1: Operation not permitted [1575409476.407139] [login1:118783:0] ib_device.c:262 UCX ERROR ibv_open_device(mlx5_1) failed: Operation not permitted [1575409476.407176] [login1:118783:0] ib_device.c:262 UCX ERROR ibv_open_device(mlx5_3) failed: Operation not permitted [1575409476.407198] [login1:118783:0] ib_device.c:262 UCX ERROR ibv_open_device(mlx5_0) failed: Operation not permitted [1575409476.407219] [login1:118783:0] ib_device.c:262 UCX ERROR ibv_open_device(mlx5_2) failed: Operation not permitted Defined "HAVE_MPI_LONG_DOUBLE" to "1" Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.packages.MPI/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/config.utilities.missing -I/tmp/petsc-LDoAyU/PETSc.options.scalarTypes -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_INT64_T, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.packages.MPI/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/config.utilities.missing -I/tmp/petsc-LDoAyU/PETSc.options.scalarTypes -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_INT64_T, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.packages.MPI/conftest.o -lstdc++ -ldl Testing executable /tmp/petsc-LDoAyU/config.packages.MPI/conftest to see if it can be run Executing: /tmp/petsc-LDoAyU/config.packages.MPI/conftest Executing: /tmp/petsc-LDoAyU/config.packages.MPI/conftest stdout: [1575409477.242182] [login1:119159:0] ib_dev.c:525 MXM ERROR Failed to open mlx5_1: Operation not permitted [1575409477.243181] [login1:119159:0] ib_device.c:262 UCX ERROR ibv_open_device(mlx5_1) failed: Operation not permitted [1575409477.243217] [login1:119159:0] ib_device.c:262 UCX ERROR ibv_open_device(mlx5_3) failed: Operation not permitted [1575409477.243240] [login1:119159:0] ib_device.c:262 UCX ERROR ibv_open_device(mlx5_0) failed: Operation not permitted [1575409477.243260] [login1:119159:0] ib_device.c:262 UCX ERROR ibv_open_device(mlx5_2) failed: Operation not permitted Defined "HAVE_MPI_INT64_T" to "1" Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.packages.MPI/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/config.utilities.missing -I/tmp/petsc-LDoAyU/PETSc.options.scalarTypes -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_C_DOUBLE_COMPLEX, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.packages.MPI/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/config.utilities.missing -I/tmp/petsc-LDoAyU/PETSc.options.scalarTypes -I/tmp/petsc-LDoAyU/config.libraries -I/tmp/petsc-LDoAyU/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int size; int ierr; MPI_Init(0,0); ierr = MPI_Type_size(MPI_C_DOUBLE_COMPLEX, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.packages.MPI/conftest.o -lstdc++ -ldl Testing executable /tmp/petsc-LDoAyU/config.packages.MPI/conftest to see if it can be run Executing: /tmp/petsc-LDoAyU/config.packages.MPI/conftest Executing: /tmp/petsc-LDoAyU/config.packages.MPI/conftest stdout: [1575409478.160910] [login1:119600:0] ib_dev.c:525 MXM ERROR Failed to open mlx5_1: Operation not permitted [1575409478.161904] [login1:119600:0] ib_device.c:262 UCX ERROR ibv_open_device(mlx5_1) failed: Operation not permitted [1575409478.161941] [login1:119600:0] ib_device.c:262 UCX ERROR ibv_open_device(mlx5_3) failed: Operation not permitted [1575409478.161963] [login1:119600:0] ib_device.c:262 UCX ERROR ibv_open_device(mlx5_0) failed: Operation not permitted [1575409478.161985] [login1:119600:0] ib_device.c:262 UCX ERROR ibv_open_device(mlx5_2) failed: Operation not permitted Defined "HAVE_MPI_C_DOUBLE_COMPLEX" to "1" ================================================================================ TEST SGIMPICheck from config.packages.MPI(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/packages/MPI.py:398) TESTING: SGIMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:398) Returns true if SGI MPI is used Checking for functions [MPI_SGI_barrier] in library [] [] Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.libraries/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/config.utilities.missing -I/tmp/petsc-LDoAyU/PETSc.options.scalarTypes -I/tmp/petsc-LDoAyU/config.packages.MPI -I/tmp/petsc-LDoAyU/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_SGI_barrier(); static void _check_MPI_SGI_barrier() { MPI_SGI_barrier(); } int main() { _check_MPI_SGI_barrier();; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.libraries/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-LDoAyU/config.libraries/conftest.o: In function `_check_MPI_SGI_barrier': /tmp/petsc-LDoAyU/config.libraries/conftest.c:5: undefined reference to `MPI_SGI_barrier' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-LDoAyU/config.libraries/conftest' /usr/bin/sha1sum: /tmp/petsc-LDoAyU/config.libraries/conftest: No such file or directory collect2: error: ld returned 1 exit status SGI MPI test failure ================================================================================ TEST CxxMPICheck from config.packages.MPI(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/packages/MPI.py:408) TESTING: CxxMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:408) Make sure C++ can compile and link Checking for header mpi.h Checking for C++ MPI_Finalize() Checking for functions [MPI_Finalize] in library [] [] Executing: mpicxx -c -o /tmp/petsc-LDoAyU/config.libraries/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.missing -I/tmp/petsc-LDoAyU/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.libraries/conftest.cc Possible ERROR while running compiler: stderr: /tmp/petsc-LDoAyU/config.libraries/conftest.cc: In function 'void _check_MPI_Finalize()': /tmp/petsc-LDoAyU/config.libraries/conftest.cc:5:41: warning: variable 'ierr' set but not used [-Wunused-but-set-variable] static void _check_MPI_Finalize() { int ierr; ^~~~ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_MPI_Finalize() { int ierr; ierr = MPI_Finalize();; } int main() { _check_MPI_Finalize();; return 0; } Executing: mpicxx -o /tmp/petsc-LDoAyU/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.libraries/conftest.o -lstdc++ -ldl ================================================================================ TEST FortranMPICheck from config.packages.MPI(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/packages/MPI.py:424) TESTING: FortranMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:424) Make sure fortran include [mpif.h] and library symbols are found ================================================================================ TEST configureIO from config.packages.MPI(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/packages/MPI.py:446) TESTING: configureIO from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:446) Check for the functions in MPI/IO - Define HAVE_MPIIO if they are present - Some older MPI 1 implementations are missing these Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.packages.MPI/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/config.utilities.missing -I/tmp/petsc-LDoAyU/PETSc.options.scalarTypes -I/tmp/petsc-LDoAyU/config.packages.MPI -I/tmp/petsc-LDoAyU/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-LDoAyU/config.packages.MPI/conftest.c: In function 'main': /tmp/petsc-LDoAyU/config.packages.MPI/conftest.c:7:1: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (MPI_Type_get_extent(MPI_INT, &lb, &extent)); ^~ /tmp/petsc-LDoAyU/config.packages.MPI/conftest.c:9:50: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the 'if' MPI_File fh; ^~~~~~~~ /tmp/petsc-LDoAyU/config.packages.MPI/conftest.c:12:1: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); ^~ /tmp/petsc-LDoAyU/config.packages.MPI/conftest.c:14:50: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the 'if' if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)); ^~ /tmp/petsc-LDoAyU/config.packages.MPI/conftest.c:18:1: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); ^~ /tmp/petsc-LDoAyU/config.packages.MPI/conftest.c:20:50: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the 'if' if (MPI_File_open(MPI_COMM_SELF, "", 0, info, &fh)); ^~ /tmp/petsc-LDoAyU/config.packages.MPI/conftest.c:12:5: warning: 'buf' is used uninitialized in this function [-Wuninitialized] if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/petsc-LDoAyU/config.packages.MPI/conftest.c:18:5: warning: 'disp' is used uninitialized in this function [-Wuninitialized] if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/petsc-LDoAyU/config.packages.MPI/conftest.c:18:5: warning: 'info' is used uninitialized in this function [-Wuninitialized] Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Aint lb, extent; if (MPI_Type_get_extent(MPI_INT, &lb, &extent)); MPI_File fh; void *buf; MPI_Status status; if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)); MPI_Offset disp; MPI_Info info; if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); if (MPI_File_open(MPI_COMM_SELF, "", 0, info, &fh)); if (MPI_File_close(&fh)); ; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.packages.MPI/conftest.o -lstdc++ -ldl Defined "HAVE_MPIIO" to "1" ================================================================================ TEST findMPIInc from config.packages.MPI(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/packages/MPI.py:528) TESTING: findMPIInc from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:528) Find MPI include paths from "mpicc -show" and use with CUDAC_FLAGS Executing: mpicc -show stdout: gcc -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.0.1-20190611-cyaenjgora6now2nusxzkfli4mzjnudx/include -pthread -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.0.1-20190611-cyaenjgora6now2nusxzkfli4mzjnudx/lib -lmpiprofilesupport -lmpi_ibm compilers: Checking arg gcc compilers: Checking arg -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.0.1-20190611-cyaenjgora6now2nusxzkfli4mzjnudx/include compilers: Found include option: -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.0.1-20190611-cyaenjgora6now2nusxzkfli4mzjnudx/include Executing: nvcc -c -o /tmp/petsc-LDoAyU/config.setCompilers/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -O2 -g -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.0.1-20190611-cyaenjgora6now2nusxzkfli4mzjnudx/include -Wno-deprecated-gpu-targets /tmp/petsc-LDoAyU/config.setCompilers/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added CUDA compiler flag -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.0.1-20190611-cyaenjgora6now2nusxzkfli4mzjnudx/include compilers: Checking arg -pthread compilers: Checking arg -L/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.0.1-20190611-cyaenjgora6now2nusxzkfli4mzjnudx/lib compilers: Checking arg -lmpiprofilesupport compilers: Checking arg -lmpi_ibm ================================================================================ TEST PetscArchMPICheck from config.packages.MPI(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/packages/MPI.py:562) TESTING: PetscArchMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:562) ================================================================================ TEST configureMPIEXEC from config.packages.MPI(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/packages/MPI.py:174) TESTING: configureMPIEXEC from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:174) Checking for location of mpiexec Checking for program /sw/sources/lsf-tools/2.0/summit/bin/jsrun...not found Checking for program /sw/summit/xalt/1.1.4/bin/jsrun...found Defined make macro "MPIEXEC" to "jsrun -g1" Executing: jsrun -g1 -n 1 printenv Unable to run jsrun -g1 with option "-n 1 printenv" This could be ok, some MPI implementations such as SGI produce a non-zero status with non-MPI programs Error: It is only possible to use js commands within a job allocation unless CSM is running 12-03-2019 16:44:40:820 120988 main: Error initializing RM connection. Exiting. Defined make macro "MPIEXEC" to "jsrun -g1" Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.packages.MPI/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/config.utilities.missing -I/tmp/petsc-LDoAyU/PETSc.options.scalarTypes -I/tmp/petsc-LDoAyU/config.packages.MPI -I/tmp/petsc-LDoAyU/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Init(0,0); MPI_Finalize(); ; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.packages.MPI/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.packages.MPI/conftest.o -lstdc++ -ldl Testing executable /tmp/petsc-LDoAyU/config.packages.MPI/conftest to see if it can be run Executing: jsrun -g1 -n 1 /tmp/petsc-LDoAyU/config.packages.MPI/conftest Executing: jsrun -g1 -n 1 /tmp/petsc-LDoAyU/config.packages.MPI/conftest ERROR while running executable: Could not execute "['jsrun -g1 -n 1 /tmp/petsc-LDoAyU/config.packages.MPI/conftest']": Error: It is only possible to use js commands within a job allocation unless CSM is running 12-03-2019 16:44:41:687 121388 main: Error initializing RM connection. Exiting. Checking for functions [MPI_Type_get_envelope MPI_Type_dup MPI_Init_thread MPI_Iallreduce MPI_Ibarrier MPI_Finalized MPI_Exscan MPI_Reduce_scatter MPI_Reduce_scatter_block] in library [] [] Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.libraries/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/config.utilities.missing -I/tmp/petsc-LDoAyU/PETSc.options.scalarTypes -I/tmp/petsc-LDoAyU/config.packages.MPI -I/tmp/petsc-LDoAyU/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Type_get_envelope(); static void _check_MPI_Type_get_envelope() { MPI_Type_get_envelope(); } char MPI_Type_dup(); static void _check_MPI_Type_dup() { MPI_Type_dup(); } char MPI_Init_thread(); static void _check_MPI_Init_thread() { MPI_Init_thread(); } char MPI_Iallreduce(); static void _check_MPI_Iallreduce() { MPI_Iallreduce(); } char MPI_Ibarrier(); static void _check_MPI_Ibarrier() { MPI_Ibarrier(); } char MPI_Finalized(); static void _check_MPI_Finalized() { MPI_Finalized(); } char MPI_Exscan(); static void _check_MPI_Exscan() { MPI_Exscan(); } char MPI_Reduce_scatter(); static void _check_MPI_Reduce_scatter() { MPI_Reduce_scatter(); } char MPI_Reduce_scatter_block(); static void _check_MPI_Reduce_scatter_block() { MPI_Reduce_scatter_block(); } int main() { _check_MPI_Type_get_envelope(); _check_MPI_Type_dup(); _check_MPI_Init_thread(); _check_MPI_Iallreduce(); _check_MPI_Ibarrier(); _check_MPI_Finalized(); _check_MPI_Exscan(); _check_MPI_Reduce_scatter(); _check_MPI_Reduce_scatter_block();; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.libraries/conftest.o -lstdc++ -ldl Defined "HAVE_MPI_TYPE_GET_ENVELOPE" to "1" Defined "HAVE_MPI_TYPE_DUP" to "1" Defined "HAVE_MPI_INIT_THREAD" to "1" Defined "HAVE_MPI_IALLREDUCE" to "1" Defined "HAVE_MPI_IBARRIER" to "1" Defined "HAVE_MPI_FINALIZED" to "1" Defined "HAVE_MPI_EXSCAN" to "1" Defined "HAVE_MPI_REDUCE_SCATTER" to "1" Defined "HAVE_MPI_REDUCE_SCATTER_BLOCK" to "1" Checking for functions [MPIX_Iallreduce] in library [] [] Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.libraries/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/config.utilities.missing -I/tmp/petsc-LDoAyU/PETSc.options.scalarTypes -I/tmp/petsc-LDoAyU/config.packages.MPI -I/tmp/petsc-LDoAyU/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIX_Iallreduce(); static void _check_MPIX_Iallreduce() { MPIX_Iallreduce(); } int main() { _check_MPIX_Iallreduce();; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.libraries/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-LDoAyU/config.libraries/conftest.o: In function `_check_MPIX_Iallreduce': /tmp/petsc-LDoAyU/config.libraries/conftest.c:5: undefined reference to `MPIX_Iallreduce' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-LDoAyU/config.libraries/conftest' /usr/bin/sha1sum: /tmp/petsc-LDoAyU/config.libraries/conftest: No such file or directory collect2: error: ld returned 1 exit status Checking for functions [MPIX_Ibarrier] in library [] [] Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.libraries/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/config.utilities.missing -I/tmp/petsc-LDoAyU/PETSc.options.scalarTypes -I/tmp/petsc-LDoAyU/config.packages.MPI -I/tmp/petsc-LDoAyU/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIX_Ibarrier(); static void _check_MPIX_Ibarrier() { MPIX_Ibarrier(); } int main() { _check_MPIX_Ibarrier();; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.libraries/conftest.o -lstdc++ -ldl Possible ERROR while running linker: exit code 1 stderr: /tmp/petsc-LDoAyU/config.libraries/conftest.o: In function `_check_MPIX_Ibarrier': /tmp/petsc-LDoAyU/config.libraries/conftest.c:5: undefined reference to `MPIX_Ibarrier' /usr/bin/ld: link errors found, deleting executable `/tmp/petsc-LDoAyU/config.libraries/conftest' /usr/bin/sha1sum: /tmp/petsc-LDoAyU/config.libraries/conftest: No such file or directory collect2: error: ld returned 1 exit status Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.packages.MPI/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/config.utilities.missing -I/tmp/petsc-LDoAyU/PETSc.options.scalarTypes -I/tmp/petsc-LDoAyU/config.packages.MPI -I/tmp/petsc-LDoAyU/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-LDoAyU/config.packages.MPI/conftest.c: In function 'main': /tmp/petsc-LDoAyU/config.packages.MPI/conftest.c:6:5: warning: unused variable 'combiner' [-Wunused-variable] int combiner = MPI_COMBINER_DUP;; ^~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_DUP;; return 0; } Defined "HAVE_MPI_COMBINER_DUP" to "1" Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.packages.MPI/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/config.utilities.missing -I/tmp/petsc-LDoAyU/PETSc.options.scalarTypes -I/tmp/petsc-LDoAyU/config.packages.MPI -I/tmp/petsc-LDoAyU/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-LDoAyU/config.packages.MPI/conftest.c: In function 'main': /tmp/petsc-LDoAyU/config.packages.MPI/conftest.c:6:5: warning: unused variable 'combiner' [-Wunused-variable] int combiner = MPI_COMBINER_CONTIGUOUS;; ^~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_CONTIGUOUS;; return 0; } Defined "HAVE_MPI_COMBINER_CONTIGUOUS" to "1" Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.packages.MPI/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/config.utilities.missing -I/tmp/petsc-LDoAyU/PETSc.options.scalarTypes -I/tmp/petsc-LDoAyU/config.packages.MPI -I/tmp/petsc-LDoAyU/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-LDoAyU/config.packages.MPI/conftest.c: In function 'main': /tmp/petsc-LDoAyU/config.packages.MPI/conftest.c:6:5: warning: unused variable 'combiner' [-Wunused-variable] int combiner = MPI_COMBINER_NAMED;; ^~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_NAMED;; return 0; } Defined "HAVE_MPI_COMBINER_NAMED" to "1" ================================================================================ TEST checkVersion from config.packages.MPI(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py:979) TESTING: checkVersion from config.packages.MPI(config/BuildSystem/config/package.py:979) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "mpi.h" ;petscpkgver(MPI_VERSION); Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.packages.MPI /tmp/petsc-LDoAyU/config.packages.MPI/conftest.c For mpi need 2 <= 3 <= ================================================================================ TEST checkSharedLibrary from config.packages.MPI(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py:913) TESTING: checkSharedLibrary from config.packages.MPI(config/BuildSystem/config/package.py:913) By default we don't care about checking if the library is shared child config.packages.MPI 13.781273 ================================================================================ TEST alternateConfigureLibrary from config.packages.yaml(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py:917) TESTING: alternateConfigureLibrary from config.packages.yaml(config/BuildSystem/config/package.py:917) Called if --with-packagename=0; does nothing by default child config.packages.yaml 0.000945 ================================================================================ TEST configureLibrary from config.packages.valgrind(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py:859) TESTING: configureLibrary from config.packages.valgrind(config/BuildSystem/config/package.py:859) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional valgrind Not checking for library in Compiler specific search VALGRIND: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names ================================================================================ TEST check from config.libraries(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] No functions to check for in library [] [] Checking for headers Compiler specific search VALGRIND: [] ================================================================================ TEST checkInclude from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in [] Checking include with compiler flags var CPPFLAGS [] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.packages.MPI -I/tmp/petsc-LDoAyU/config.headers /tmp/petsc-LDoAyU/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-LDoAyU/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-LDoAyU/config.headers/conftest.c" # 1 "/tmp/petsc-LDoAyU/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-LDoAyU/config.headers/conftest.c" 2 # 1 "/tmp/petsc-LDoAyU/config.headers/conffix.h" 1 # 3 "/tmp/petsc-LDoAyU/config.headers/conftest.c" 2 stderr: /tmp/petsc-LDoAyU/config.headers/conftest.c:3:31: fatal error: valgrind/valgrind.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-LDoAyU/config.headers/conftest.c:3:31: fatal error: valgrind/valgrind.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-LDoAyU/config.headers/conftest.c:3:31: fatal error: valgrind/valgrind.h: No such file or directory #include ^compilation terminated.: Not checking for library in Package specific search directory VALGRIND: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names ================================================================================ TEST check from config.libraries(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] No functions to check for in library [] [] Checking for headers Package specific search directory VALGRIND: ['/usr/local/include'] ================================================================================ TEST checkInclude from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in ['/usr/local/include'] Checking include with compiler flags var CPPFLAGS ['/usr/local/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.packages.MPI -I/tmp/petsc-LDoAyU/config.headers -I/usr/local/include /tmp/petsc-LDoAyU/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-LDoAyU/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-LDoAyU/config.headers/conftest.c" # 1 "/tmp/petsc-LDoAyU/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-LDoAyU/config.headers/conftest.c" 2 # 1 "/tmp/petsc-LDoAyU/config.headers/conffix.h" 1 # 3 "/tmp/petsc-LDoAyU/config.headers/conftest.c" 2 stderr: /tmp/petsc-LDoAyU/config.headers/conftest.c:3:31: fatal error: valgrind/valgrind.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-LDoAyU/config.headers/conftest.c:3:31: fatal error: valgrind/valgrind.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-LDoAyU/config.headers/conftest.c:3:31: fatal error: valgrind/valgrind.h: No such file or directory #include ^compilation terminated.: Not checking for library in Package specific search directory VALGRIND: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names ================================================================================ TEST check from config.libraries(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] No functions to check for in library [] [] Checking for headers Package specific search directory VALGRIND: ['/usr/local/include'] ================================================================================ TEST checkInclude from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in ['/usr/local/include'] Checking include with compiler flags var CPPFLAGS ['/usr/local/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.packages.MPI -I/tmp/petsc-LDoAyU/config.headers -I/usr/local/include /tmp/petsc-LDoAyU/config.headers/conftest.c Possible ERROR while running preprocessor: exit code 1 stdout: # 1 "/tmp/petsc-LDoAyU/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-LDoAyU/config.headers/conftest.c" # 1 "/tmp/petsc-LDoAyU/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-LDoAyU/config.headers/conftest.c" 2 # 1 "/tmp/petsc-LDoAyU/config.headers/conffix.h" 1 # 3 "/tmp/petsc-LDoAyU/config.headers/conftest.c" 2 stderr: /tmp/petsc-LDoAyU/config.headers/conftest.c:3:31: fatal error: valgrind/valgrind.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-LDoAyU/config.headers/conftest.c:3:31: fatal error: valgrind/valgrind.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-LDoAyU/config.headers/conftest.c:3:31: fatal error: valgrind/valgrind.h: No such file or directory #include ^compilation terminated.: VALGRIND: SearchDir DirPath not found.. skipping: /opt/local Executing: uname -s stdout: Linux =============================================================================== It appears you do not have valgrind installed on your system. We HIGHLY recommend you install it from www.valgrind.org Or install valgrind-devel or equivalent using your package manager. Then rerun ./configure =============================================================================== child config.packages.valgrind 0.157168 ================================================================================ TEST alternateConfigureLibrary from config.packages.ssl(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py:917) TESTING: alternateConfigureLibrary from config.packages.ssl(config/BuildSystem/config/package.py:917) Called if --with-packagename=0; does nothing by default child config.packages.ssl 0.000927 ================================================================================ TEST alternateConfigureLibrary from config.packages.sprng(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py:917) TESTING: alternateConfigureLibrary from config.packages.sprng(config/BuildSystem/config/package.py:917) Called if --with-packagename=0; does nothing by default child config.packages.sprng 0.000742 Not a clone of PETSc or no Fortran compiler or fortran-bindings disabled, don't need Sowing child config.packages.sowing 0.001337 ================================================================================ TEST alternateConfigureLibrary from config.packages.revolve(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py:917) TESTING: alternateConfigureLibrary from config.packages.revolve(config/BuildSystem/config/package.py:917) Called if --with-packagename=0; does nothing by default child config.packages.revolve 0.000744 ================================================================================ TEST alternateConfigureLibrary from config.packages.radau5(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py:917) TESTING: alternateConfigureLibrary from config.packages.radau5(config/BuildSystem/config/package.py:917) Called if --with-packagename=0; does nothing by default child config.packages.radau5 0.000727 ================================================================================ TEST alternateConfigureLibrary from config.packages.pami(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py:917) TESTING: alternateConfigureLibrary from config.packages.pami(config/BuildSystem/config/package.py:917) Called if --with-packagename=0; does nothing by default child config.packages.pami 0.000641 ================================================================================ TEST alternateConfigureLibrary from config.packages.opengles(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py:917) TESTING: alternateConfigureLibrary from config.packages.opengles(config/BuildSystem/config/package.py:917) Called if --with-packagename=0; does nothing by default child config.packages.opengles 0.000640 ================================================================================ TEST alternateConfigureLibrary from config.packages.opencl(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py:917) TESTING: alternateConfigureLibrary from config.packages.opencl(config/BuildSystem/config/package.py:917) Called if --with-packagename=0; does nothing by default child config.packages.opencl 0.000633 ================================================================================ TEST alternateConfigureLibrary from config.packages.muparser(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py:917) TESTING: alternateConfigureLibrary from config.packages.muparser(config/BuildSystem/config/package.py:917) Called if --with-packagename=0; does nothing by default child config.packages.muparser 0.000725 Defined "PYTHON_EXE" to ""/usr/bin/python"" Executing: /usr/bin/python -c "import Cython" Executing: /usr/bin/python -c "import numpy" child config.packages.python 0.049195 ================================================================================ TEST alternateConfigureLibrary from config.packages.petsc4py(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/packages/petsc4py.py:97) TESTING: alternateConfigureLibrary from config.packages.petsc4py(config/BuildSystem/config/packages/petsc4py.py:97) Defined make rule "petsc4py-build" with dependencies "" and code [] Defined make rule "petsc4py-install" with dependencies "" and code [] child config.packages.petsc4py 0.002260 ================================================================================ TEST alternateConfigureLibrary from config.packages.mpi4py(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/packages/mpi4py.py:74) TESTING: alternateConfigureLibrary from config.packages.mpi4py(config/BuildSystem/config/packages/mpi4py.py:74) Defined make rule "mpi4py-build" with dependencies "" and code [] Defined make rule "mpi4py-install" with dependencies "" and code [] child config.packages.mpi4py 0.002106 ================================================================================ TEST alternateConfigureLibrary from config.packages.mpe(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py:917) TESTING: alternateConfigureLibrary from config.packages.mpe(config/BuildSystem/config/package.py:917) Called if --with-packagename=0; does nothing by default child config.packages.mpe 0.000778 ================================================================================ TEST alternateConfigureLibrary from config.packages.memkind(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py:917) TESTING: alternateConfigureLibrary from config.packages.memkind(config/BuildSystem/config/package.py:917) Called if --with-packagename=0; does nothing by default child config.packages.memkind 0.000649 ================================================================================ TEST alternateConfigureLibrary from config.packages.libmesh(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/packages/libmesh.py:76) TESTING: alternateConfigureLibrary from config.packages.libmesh(config/BuildSystem/config/packages/libmesh.py:76) Defined make rule "libmesh-build" with dependencies "" and code [] Defined make rule "libmesh-install" with dependencies "" and code [] child config.packages.libmesh 0.001993 ================================================================================ TEST alternateConfigureLibrary from config.packages.moose(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py:917) TESTING: alternateConfigureLibrary from config.packages.moose(config/BuildSystem/config/package.py:917) Called if --with-packagename=0; does nothing by default child config.packages.moose 0.000691 ================================================================================ TEST alternateConfigureLibrary from config.packages.libjpeg(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py:917) TESTING: alternateConfigureLibrary from config.packages.libjpeg(config/BuildSystem/config/package.py:917) Called if --with-packagename=0; does nothing by default child config.packages.libjpeg 0.000733 ================================================================================ TEST alternateConfigureLibrary from config.packages.libceed(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py:917) TESTING: alternateConfigureLibrary from config.packages.libceed(config/BuildSystem/config/package.py:917) Called if --with-packagename=0; does nothing by default child config.packages.libceed 0.000728 Checking for program /sw/sources/lsf-tools/2.0/summit/bin/lgrind...not found Checking for program /sw/summit/xalt/1.1.4/bin/lgrind...not found Checking for program /sw/summit/forge/19.1.4/bin/lgrind...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.0.1-20190611-cyaenjgora6now2nusxzkfli4mzjnudx/bin/lgrind...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.15.2-xit2o3iepxvqbyku77lwcugufilztu7t/bin/lgrind...not found Checking for program /sw/summit/gcc/6.4.0/bin/lgrind...not found Checking for program /sw/summit/cuda/10.1.168/bin/lgrind...not found Checking for program /usr/bin/lgrind...not found Checking for program /usr/sbin/lgrind...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-csygoqyym3m3ysoaperhxlhoiluvpa2u/bin/lgrind...not found Checking for program /sw/sources/hpss/bin/lgrind...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1/linux3.10-glibc2.17-ppc64le-csm/etc/lgrind...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1/linux3.10-glibc2.17-ppc64le-csm/bin/lgrind...not found Checking for program /opt/ibm/csm/bin/lgrind...not found Checking for program /usr/local/bin/lgrind...not found Checking for program /usr/local/sbin/lgrind...not found Checking for program /opt/ibm/flightlog/bin/lgrind...not found Checking for program /opt/ibutils/bin/lgrind...not found Checking for program /opt/ibm/spectrum_mpi/jsm_pmix/bin/lgrind...not found Checking for program /opt/puppetlabs/bin/lgrind...not found Checking for program /usr/lpp/mmfs/bin/lgrind...not found Checking for program /ccs/home/adams/petsc/lib/petsc/bin/win32fe/lgrind...not found child config.packages.lgrind 0.004938 ================================================================================ TEST alternateConfigureLibrary from config.packages.slepc(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/packages/slepc.py:88) TESTING: alternateConfigureLibrary from config.packages.slepc(config/BuildSystem/config/packages/slepc.py:88) Defined make rule "slepc-build" with dependencies "" and code [] Defined make rule "slepc-install" with dependencies "" and code [] child config.packages.slepc 0.002011 ================================================================================ TEST alternateConfigureLibrary from config.packages.gmp(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py:917) TESTING: alternateConfigureLibrary from config.packages.gmp(config/BuildSystem/config/package.py:917) Called if --with-packagename=0; does nothing by default child config.packages.gmp 0.000777 ================================================================================ TEST alternateConfigureLibrary from config.packages.mpfr(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py:917) TESTING: alternateConfigureLibrary from config.packages.mpfr(config/BuildSystem/config/package.py:917) Called if --with-packagename=0; does nothing by default child config.packages.mpfr 0.000734 ================================================================================ TEST alternateConfigureLibrary from config.packages.giflib(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py:917) TESTING: alternateConfigureLibrary from config.packages.giflib(config/BuildSystem/config/package.py:917) Called if --with-packagename=0; does nothing by default child config.packages.giflib 0.000730 ================================================================================ TEST checkDependencies from config.packages.ctetgen(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py:834) TESTING: checkDependencies from config.packages.ctetgen(config/BuildSystem/config/package.py:834) ================================================================================ TEST configureLibrary from config.packages.ctetgen(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/packages/ctetgen.py:23) TESTING: configureLibrary from config.packages.ctetgen(config/BuildSystem/config/packages/ctetgen.py:23) Since ctergen cannot be built until after PETSc configure is complete we need to just assume the downloaded library will work Looking for CTETGEN at git.ctetgen, hg.ctetgen or a directory starting with ['ctetgen'] Could not locate an existing copy of CTETGEN: ['git.amgx'] Downloading ctetgen =============================================================================== Trying to download git://https://bitbucket.org/petsc/ctetgen.git for CTETGEN =============================================================================== Executing: git clone https://bitbucket.org/petsc/ctetgen.git /autofs/nccs-svm1_home1/adams/petsc/arch-summit-opt64-gnu-cuda/externalpackages/git.ctetgen stdout: Cloning into '/autofs/nccs-svm1_home1/adams/petsc/arch-summit-opt64-gnu-cuda/externalpackages/git.ctetgen'... Looking for CTETGEN at git.ctetgen, hg.ctetgen or a directory starting with ['ctetgen'] Found a copy of CTETGEN in git.ctetgen Executing: ['git', 'rev-parse', '--git-dir'] stdout: .git Executing: ['git', 'cat-file', '-e', 'ctetgen-0.5^{commit}'] Executing: ['git', 'rev-parse', 'ctetgen-0.5'] stdout: 082144edbc9e2c51e0a246b825c2a005a9fc9907 Executing: ['git', '-c', 'user.name=petsc-configure', '-c', 'user.email=petsc@configure', 'stash'] stdout: No local changes to save Executing: ['git', 'clean', '-f', '-d', '-x'] Executing: ['git', 'checkout', '-f', '082144edbc9e2c51e0a246b825c2a005a9fc9907'] ================================================================================ TEST checkVersion from config.packages.ctetgen(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py:979) TESTING: checkVersion from config.packages.ctetgen(config/BuildSystem/config/package.py:979) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version ================================================================================ TEST checkSharedLibrary from config.packages.ctetgen(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py:913) TESTING: checkSharedLibrary from config.packages.ctetgen(config/BuildSystem/config/package.py:913) By default we don't care about checking if the library is shared child config.packages.ctetgen 2.869936 ================================================================================ TEST alternateConfigureLibrary from config.packages.concurrencykit(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py:917) TESTING: alternateConfigureLibrary from config.packages.concurrencykit(config/BuildSystem/config/package.py:917) Called if --with-packagename=0; does nothing by default child config.packages.concurrencykit 0.000811 ================================================================================ TEST locateC2html from config.packages.c2html(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/packages/c2html.py:33) TESTING: locateC2html from config.packages.c2html(config/BuildSystem/config/packages/c2html.py:33) Looking for default C2html executable Checking for program /sw/sources/lsf-tools/2.0/summit/bin/c2html...not found Checking for program /sw/summit/xalt/1.1.4/bin/c2html...not found Checking for program /sw/summit/forge/19.1.4/bin/c2html...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.0.1-20190611-cyaenjgora6now2nusxzkfli4mzjnudx/bin/c2html...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.15.2-xit2o3iepxvqbyku77lwcugufilztu7t/bin/c2html...not found Checking for program /sw/summit/gcc/6.4.0/bin/c2html...not found Checking for program /sw/summit/cuda/10.1.168/bin/c2html...not found Checking for program /usr/bin/c2html...not found Checking for program /usr/sbin/c2html...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/darshan-runtime-3.1.7-csygoqyym3m3ysoaperhxlhoiluvpa2u/bin/c2html...not found Checking for program /sw/sources/hpss/bin/c2html...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1/linux3.10-glibc2.17-ppc64le-csm/etc/c2html...not found Checking for program /opt/ibm/spectrumcomputing/lsf/10.1/linux3.10-glibc2.17-ppc64le-csm/bin/c2html...not found Checking for program /opt/ibm/csm/bin/c2html...not found Checking for program /usr/local/bin/c2html...not found Checking for program /usr/local/sbin/c2html...not found Checking for program /opt/ibm/flightlog/bin/c2html...not found Checking for program /opt/ibutils/bin/c2html...not found Checking for program /opt/ibm/spectrum_mpi/jsm_pmix/bin/c2html...not found Checking for program /opt/puppetlabs/bin/c2html...not found Checking for program /usr/lpp/mmfs/bin/c2html...not found Checking for program /ccs/home/adams/petsc/lib/petsc/bin/win32fe/c2html...not found child config.packages.c2html 0.004069 ================================================================================ TEST checkDependencies from config.packages.cuda(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py:834) TESTING: checkDependencies from config.packages.cuda(config/BuildSystem/config/package.py:834) ================================================================================ TEST configureLibrary from config.packages.cuda(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/packages/cuda.py:76) TESTING: configureLibrary from config.packages.cuda(config/BuildSystem/config/packages/cuda.py:76) ================================================================================== Checking for a functional cuda All intermediate test results are stored in /tmp/petsc-LDoAyU/config.packages.cuda Checking for program /sw/sources/lsf-tools/2.0/summit/bin/nvcc...not found Checking for program /sw/summit/xalt/1.1.4/bin/nvcc...not found Checking for program /sw/summit/forge/19.1.4/bin/nvcc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.0.1-20190611-cyaenjgora6now2nusxzkfli4mzjnudx/bin/nvcc...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.15.2-xit2o3iepxvqbyku77lwcugufilztu7t/bin/nvcc...not found Checking for program /sw/summit/gcc/6.4.0/bin/nvcc...not found Checking for program /sw/summit/cuda/10.1.168/bin/nvcc...found Defined make macro "SYSTEMNVCC" to "/sw/summit/cuda/10.1.168/bin/nvcc" CUDA: DirPath not found.. skipping: /sw/summit/cuda/10.1.168/lib Checking for library in Package specific search directory CUDA: ['/sw/summit/cuda/10.1.168/lib64/libcufft.a', 'libcublas.a', 'libcudart.a', 'libcusparse.a', 'libcusolver.a'] Contents: ['rpm', 'LICENSE', 'README', 'bin', 'compat', 'doc', 'extras', 'include', 'lib64', 'libnsight', 'libnvvp', 'nsightee_plugins', 'nvml', 'nvvm', 'samples', 'share', 'targets', 'tools', 'version.txt', 'NVIDIA_SLA_cuDNN_Support.txt', 'LICENSE.txt'] ================================================================================ TEST check from config.libraries(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names ================================================================================ TEST check from config.libraries(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/libraries.py:157) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:157) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [cublasInit cufftDestroy] in library ['/sw/summit/cuda/10.1.168/lib64/libcufft.a', 'libcublas.a', 'libcudart.a', 'libcusparse.a', 'libcusolver.a'] [] Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.libraries/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/config.utilities.missing -I/tmp/petsc-LDoAyU/PETSc.options.scalarTypes -I/tmp/petsc-LDoAyU/config.packages.MPI -I/tmp/petsc-LDoAyU/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char cublasInit(); static void _check_cublasInit() { cublasInit(); } char cufftDestroy(); static void _check_cufftDestroy() { cufftDestroy(); } int main() { _check_cublasInit(); _check_cufftDestroy();; return 0; } Executing: mpicc -o /tmp/petsc-LDoAyU/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.libraries/conftest.o -Wl,-rpath,/sw/summit/cuda/10.1.168/lib64 -L/sw/summit/cuda/10.1.168/lib64 -lcufft -lcublas -lcudart -lcusparse -lcusolver -lstdc++ -ldl Defined "HAVE_LIBCUFFT" to "1" Defined "HAVE_LIBCUBLAS" to "1" Defined "HAVE_LIBCUDART" to "1" Defined "HAVE_LIBCUSPARSE" to "1" Defined "HAVE_LIBCUSOLVER" to "1" No functions to check for in library ['/sw/summit/cuda/10.1.168/lib64/libcufft.a', 'libcublas.a', 'libcudart.a', 'libcusparse.a', 'libcusolver.a'] [] Checking for headers Package specific search directory CUDA: ['/sw/summit/cuda/10.1.168/include'] ================================================================================ TEST checkInclude from config.headers(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['cublas.h', 'cufft.h', 'cusparse.h', 'cusolverDn.h', 'thrust/version.h'] in ['/sw/summit/cuda/10.1.168/include'] Checking include with compiler flags var CPPFLAGS ['/sw/summit/cuda/10.1.168/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.packages.MPI -I/tmp/petsc-LDoAyU/config.headers -I/sw/summit/cuda/10.1.168/include /tmp/petsc-LDoAyU/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Checking include with compiler flags var CPPFLAGS ['/sw/summit/cuda/10.1.168/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.packages.MPI -I/tmp/petsc-LDoAyU/config.headers -I/sw/summit/cuda/10.1.168/include /tmp/petsc-LDoAyU/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Checking include with compiler flags var CPPFLAGS ['/sw/summit/cuda/10.1.168/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.packages.MPI -I/tmp/petsc-LDoAyU/config.headers -I/sw/summit/cuda/10.1.168/include /tmp/petsc-LDoAyU/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Checking include with compiler flags var CPPFLAGS ['/sw/summit/cuda/10.1.168/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.packages.MPI -I/tmp/petsc-LDoAyU/config.headers -I/sw/summit/cuda/10.1.168/include /tmp/petsc-LDoAyU/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Checking include with compiler flags var CPPFLAGS ['/sw/summit/cuda/10.1.168/include'] Preprocessing source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.packages.MPI -I/tmp/petsc-LDoAyU/config.headers -I/sw/summit/cuda/10.1.168/include /tmp/petsc-LDoAyU/config.headers/conftest.c Preprocess stderr before filtering:: Preprocess stderr after filtering:: Found header files ['cublas.h', 'cufft.h', 'cusparse.h', 'cusolverDn.h', 'thrust/version.h'] in ['/sw/summit/cuda/10.1.168/include'] Checking for size of type: teststruct Executing: nvcc -c -o /tmp/petsc-LDoAyU/config.types/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.types -O2 -g -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.0.1-20190611-cyaenjgora6now2nusxzkfli4mzjnudx/include -Wno-deprecated-gpu-targets /tmp/petsc-LDoAyU/config.types/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include typedef struct {double a; int b;} teststruct; char assert_sizeof[(sizeof(teststruct)==16)*2-1]; Checking for size of type: teststruct Executing: mpicc -c -o /tmp/petsc-LDoAyU/config.types/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.compilers -I/tmp/petsc-LDoAyU/config.utilities.closure -I/tmp/petsc-LDoAyU/config.headers -I/tmp/petsc-LDoAyU/config.utilities.cacheDetails -I/tmp/petsc-LDoAyU/config.functions -I/tmp/petsc-LDoAyU/config.utilities.featureTestMacros -I/tmp/petsc-LDoAyU/config.utilities.missing -I/tmp/petsc-LDoAyU/PETSc.options.scalarTypes -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.packages.MPI -I/tmp/petsc-LDoAyU/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O2 -fPIC /tmp/petsc-LDoAyU/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include typedef struct {double a; int b;} teststruct; char assert_sizeof[(sizeof(teststruct)==16)*2-1]; Checking if sizeof(void*) in CUDA is the same as with regular compiler Checking for size of type: void * Executing: nvcc -c -o /tmp/petsc-LDoAyU/config.types/conftest.o -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.types -O2 -g -I/autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.0.1-20190611-cyaenjgora6now2nusxzkfli4mzjnudx/include -Wno-deprecated-gpu-targets /tmp/petsc-LDoAyU/config.types/conftest.cu Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include char assert_sizeof[(sizeof(void *)==8)*2-1]; Defined "HAVE_CUDA" to "1" ================================================================================ TEST checkVersion from config.packages.cuda(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py:979) TESTING: checkVersion from config.packages.cuda(config/BuildSystem/config/package.py:979) Uses self.version, self.minversion, self.maxversion, self.versionname, and self.versioninclude to determine if package has required version Preprocessing source: #include "confdefs.h" #include "conffix.h" #include "cuda.h" ;petscpkgver(CUDA_VERSION); Executing: mpicc -E -I/tmp/petsc-LDoAyU/config.setCompilers -I/tmp/petsc-LDoAyU/config.types -I/tmp/petsc-LDoAyU/config.packages.cuda -I/tmp/petsc-LDoAyU/config.packages.MPI -I/tmp/petsc-LDoAyU/config.headers -I/sw/summit/cuda/10.1.168/include /tmp/petsc-LDoAyU/config.packages.cuda/conftest.c For cuda need 7.5 <= 10.1 <= ================================================================================ TEST checkSharedLibrary from config.packages.cuda(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py:913) TESTING: checkSharedLibrary from config.packages.cuda(config/BuildSystem/config/package.py:913) By default we don't care about checking if the library is shared child config.packages.cuda 2.510337 ================================================================================ TEST alternateConfigureLibrary from config.packages.boost(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py:917) TESTING: alternateConfigureLibrary from config.packages.boost(config/BuildSystem/config/package.py:917) Called if --with-packagename=0; does nothing by default child config.packages.boost 0.001038 ================================================================================ TEST alternateConfigureLibrary from config.packages.silo(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py:917) TESTING: alternateConfigureLibrary from config.packages.silo(config/BuildSystem/config/package.py:917) Called if --with-packagename=0; does nothing by default child config.packages.silo 0.000752 ================================================================================ TEST alternateConfigureLibrary from config.packages.Random123(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py:917) TESTING: alternateConfigureLibrary from config.packages.Random123(config/BuildSystem/config/package.py:917) Called if --with-packagename=0; does nothing by default child config.packages.Random123 0.000755 ================================================================================ TEST alternateConfigureLibrary from config.packages.PARTY(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py:917) TESTING: alternateConfigureLibrary from config.packages.PARTY(config/BuildSystem/config/package.py:917) Called if --with-packagename=0; does nothing by default child config.packages.PARTY 0.000739 ================================================================================ TEST alternateConfigureLibrary from config.packages.Matlab(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py:917) TESTING: alternateConfigureLibrary from config.packages.Matlab(config/BuildSystem/config/package.py:917) Called if --with-packagename=0; does nothing by default child config.packages.Matlab 0.000600 ================================================================================ TEST alternateConfigureLibrary from config.packages.MatlabEngine(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py:917) TESTING: alternateConfigureLibrary from config.packages.MatlabEngine(config/BuildSystem/config/package.py:917) Called if --with-packagename=0; does nothing by default child config.packages.MatlabEngine 0.000638 ================================================================================ TEST alternateConfigureLibrary from config.packages.Mathematica(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py:917) TESTING: alternateConfigureLibrary from config.packages.Mathematica(config/BuildSystem/config/package.py:917) Called if --with-packagename=0; does nothing by default child config.packages.Mathematica 0.000636 child config.packages.cxxlibs 0.000012 ================================================================================ TEST alternateConfigureLibrary from config.packages.opengl(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py:917) TESTING: alternateConfigureLibrary from config.packages.opengl(config/BuildSystem/config/package.py:917) Called if --with-packagename=0; does nothing by default child config.packages.opengl 0.000641 ================================================================================ TEST alternateConfigureLibrary from config.packages.glut(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py:917) TESTING: alternateConfigureLibrary from config.packages.glut(config/BuildSystem/config/package.py:917) Called if --with-packagename=0; does nothing by default child config.packages.glut 0.000638 ================================================================================ TEST alternateConfigureLibrary from config.packages.X(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py:917) TESTING: alternateConfigureLibrary from config.packages.X(config/BuildSystem/config/package.py:917) Called if --with-packagename=0; does nothing by default child config.packages.X 0.000637 ================================================================================ TEST alternateConfigureLibrary from config.packages.GLVis(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py:917) TESTING: alternateConfigureLibrary from config.packages.GLVis(config/BuildSystem/config/package.py:917) Called if --with-packagename=0; does nothing by default child config.packages.GLVis 0.000727 ================================================================================ TEST alternateConfigureLibrary from config.packages.CoDiPack(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py:917) TESTING: alternateConfigureLibrary from config.packages.CoDiPack(config/BuildSystem/config/package.py:917) Called if --with-packagename=0; does nothing by default child config.packages.CoDiPack 0.000723 ================================================================================ TEST alternateConfigureLibrary from config.packages.adblaslapack(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py:917) TESTING: alternateConfigureLibrary from config.packages.adblaslapack(config/BuildSystem/config/package.py:917) Called if --with-packagename=0; does nothing by default child config.packages.adblaslapack 0.000723 ================================================================================ TEST alternateConfigureLibrary from config.packages.ADOLC(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py:917) TESTING: alternateConfigureLibrary from config.packages.ADOLC(config/BuildSystem/config/package.py:917) Called if --with-packagename=0; does nothing by default child config.packages.ADOLC 0.000727 ================================================================================ TEST locateCMake from config.packages.cmake(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/packages/cmake.py:39) TESTING: locateCMake from config.packages.cmake(config/BuildSystem/config/packages/cmake.py:39) Looking for default CMake executable Checking for program /sw/sources/lsf-tools/2.0/summit/bin/cmake...not found Checking for program /sw/summit/xalt/1.1.4/bin/cmake...not found Checking for program /sw/summit/forge/19.1.4/bin/cmake...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.0.1-20190611-cyaenjgora6now2nusxzkfli4mzjnudx/bin/cmake...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.15.2-xit2o3iepxvqbyku77lwcugufilztu7t/bin/cmake...found Defined make macro "CMAKE" to "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.15.2-xit2o3iepxvqbyku77lwcugufilztu7t/bin/cmake" Looking for default CTest executable Checking for program /sw/sources/lsf-tools/2.0/summit/bin/ctest...not found Checking for program /sw/summit/xalt/1.1.4/bin/ctest...not found Checking for program /sw/summit/forge/19.1.4/bin/ctest...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/1-compute/opt/spack/20180914/linux-rhel7-ppc64le/gcc-6.4.0/spectrum-mpi-10.3.0.1-20190611-cyaenjgora6now2nusxzkfli4mzjnudx/bin/ctest...not found Checking for program /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.15.2-xit2o3iepxvqbyku77lwcugufilztu7t/bin/ctest...found Defined make macro "CTEST" to "/autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.15.2-xit2o3iepxvqbyku77lwcugufilztu7t/bin/ctest" Executing: /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/cmake-3.15.2-xit2o3iepxvqbyku77lwcugufilztu7t/bin/cmake --version stdout: cmake version 3.15.2 CMake suite maintained and supported by Kitware (kitware.com/cmake). cmake version found 3.15.2 child config.packages.cmake 0.022218 ================================================================================ TEST alternateConfigureLibrary from config.packages.googletest(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py:917) TESTING: alternateConfigureLibrary from config.packages.googletest(config/BuildSystem/config/package.py:917) Called if --with-packagename=0; does nothing by default child config.packages.googletest 0.001115 ================================================================================ TEST checkDependencies from config.packages.amgx(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py:834) TESTING: checkDependencies from config.packages.amgx(config/BuildSystem/config/package.py:834) ================================================================================ TEST configureLibrary from config.packages.amgx(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py:859) TESTING: configureLibrary from config.packages.amgx(config/BuildSystem/config/package.py:859) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional amgx Looking for AMGX at git.amgx, hg.amgx or a directory starting with ['amgx'] Found a copy of AMGX in git.amgx **** Configure header /tmp/petsc-LDoAyU/confdefs.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #define IS_COLORING_MAX USHRT_MAX #define MPIU_COLORING_VALUE MPI_UNSIGNED_SHORT #define PETSC_CLANGUAGE_C 1 #define PETSC_HAVE_ERF 1 #define PETSC_HAVE_FENV_H 1 #define PETSC_HAVE_LOG2 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_CXX_INLINE inline #define PETSC_CXX_RESTRICT __restrict #define PETSC_C_INLINE inline #define PETSC_C_RESTRICT __restrict #define PETSC_HAVE_C99 1 #define PETSC_HAVE_CXX_DIALECT_CXX11 1 #define PETSC_HAVE_CXX_DIALECT_CXX14 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_INTTYPES_H 1 #define PETSC_HAVE_MALLOC_H 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_PTHREAD_H 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_SYS_PROCFS_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_SYS_SYSINFO_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_ISINF 1 #define PETSC_HAVE_ISNAN 1 #define PETSC_HAVE_ISNORMAL 1 #define PETSC_USE_REAL_DOUBLE 1 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_HAVE_STRUCT_SIGACTION 1 #define PETSC_SIZEOF_ENUM 4 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG 8 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_USE_VISIBILITY_C 1 #define PETSC_USE_VISIBILITY_CXX 1 #define PETSC_USE_64BIT_INDICES 1 #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_BZERO 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_GETWD 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_MEMALIGN 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE_MMAP 1 #define PETSC_HAVE_NANOSLEEP 1 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_SYSINFO 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_USLEEP 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_SIGNAL_CAST #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_USE_SHARED_LIBRARIES 1 #define PETSC_USE_DEBUGGER "gdb" #define PETSC_VERSION_BRANCH_GIT "barry/2019-12-01/mark/pc-amgx-feature" #define PETSC_VERSION_DATE_GIT "2019-12-03 10:28:45 -0500" #define PETSC_VERSION_GIT "v3.12.2-336-g3f4ce0d" #define PETSC_HAVE_MPIIO 1 #define PETSC_HAVE_MPI_COMBINER_CONTIGUOUS 1 #define PETSC_HAVE_MPI_COMBINER_DUP 1 #define PETSC_HAVE_MPI_COMBINER_NAMED 1 #define PETSC_HAVE_MPI_C_DOUBLE_COMPLEX 1 #define PETSC_HAVE_MPI_EXSCAN 1 #define PETSC_HAVE_MPI_FINALIZED 1 #define PETSC_HAVE_MPI_GET_LIBRARY_VERSION 1 #define PETSC_HAVE_MPI_IALLREDUCE 1 #define PETSC_HAVE_MPI_IBARRIER 1 #define PETSC_HAVE_MPI_INIT_THREAD 1 #define PETSC_HAVE_MPI_INT64_T 1 #define PETSC_HAVE_MPI_IN_PLACE 1 #define PETSC_HAVE_MPI_LONG_DOUBLE 1 #define PETSC_HAVE_MPI_NEIGHBORHOOD_COLLECTIVES 1 #define PETSC_HAVE_MPI_NONBLOCKING_COLLECTIVES 1 #define PETSC_HAVE_MPI_PROCESS_SHARED_MEMORY 1 #define PETSC_HAVE_MPI_REDUCE_LOCAL 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER_BLOCK 1 #define PETSC_HAVE_MPI_TYPE_DUP 1 #define PETSC_HAVE_MPI_TYPE_GET_ENVELOPE 1 #define PETSC_HAVE_MPI_WIN_CREATE 1 #define PETSC_HAVE_OMPI_MAJOR_VERSION 10 #define PETSC_HAVE_OMPI_MINOR_VERSION 03 #define PETSC_HAVE_OMPI_RELEASE_VERSION 00 #define PETSC_Alignx(a,b) #define PETSC_IS_COLOR_VALUE_TYPE short #define PETSC_IS_COLOR_VALUE_TYPE_F integer2 #define PETSC_USE_AVX512_KERNELS 1 #define PETSC_USE_BACKWARD_LOOP 1 #define PETSC_USE_CTABLE 1 #define PETSC_USE_INFO 1 #define PETSC_USE_LOG 1 #define PETSC_USE_MALLOC_COALESCED 1 #define PETSC_MEMALIGN 16 #define PETSC_LEVEL1_DCACHE_LINESIZE 32 #define PETSC__BSD_SOURCE 1 #define PETSC__DEFAULT_SOURCE 1 #define PETSC__GNU_SOURCE 1 #define PETSC_USE_PROC_FOR_SIZE 1 #define PETSC_HAVE_CUDA 1 #define PETSC_PYTHON_EXE "/usr/bin/python" #endif **** C specific Configure header /tmp/petsc-LDoAyU/conffix.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #if defined(__cplusplus) extern "C" { } #else #endif #endif ******************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): ------------------------------------------------------------------------------- /autofs/nccs-svm1_home1/adams/petsc/arch-summit-opt64-gnu-cuda/externalpackages/git.amgx: is not a git repository! /autofs/nccs-svm1_home1/adams/petsc/arch-summit-opt64-gnu-cuda/externalpackages/git.amgx/.git not found! ******************************************************************************* File "/autofs/nccs-svm1_home1/adams/petsc/config/configure.py", line 445, in petsc_configure framework.configure(out = sys.stdout) File "/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/framework.py", line 1195, in configure self.processChildren() File "/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/framework.py", line 1184, in processChildren self.serialEvaluation(self.childGraph) File "/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/framework.py", line 1159, in serialEvaluation child.configure() File "/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py", line 1088, in configure self.executeTest(self.configureLibrary) File "/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/base.py", line 139, in executeTest ret = test(*args,**kargs) File "/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py", line 866, in configureLibrary for location, directory, lib, incl in self.generateGuesses(): File "/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py", line 444, in generateGuesses d = self.checkDownload() File "/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py", line 578, in checkDownload return self.getInstallDir() File "/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py", line 330, in getInstallDir self.updateGitDir() File "/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/package.py", line 651, in updateGitDir raise RuntimeError(self.packageDir +': is not a git repository! '+os.path.join(self.packageDir,'.git')+' not found!') ================================================================================ Finishing configure run at Tue, 03 Dec 2019 16:44:49 -0500 ================================================================================