<div dir="ltr"><div dir="ltr"><br></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Wed, Sep 25, 2019 at 6:23 PM Balay, Satish <<a href="mailto:balay@mcs.anl.gov">balay@mcs.anl.gov</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">> 18:16 (cb53a04...) ~/petsc-karl$<br>
<br>
So this is the commit I recommended you test against - and that's what<br>
you have got now. Please go ahead and test.<br>
<font face="monospace"><br></font></blockquote><div><font face="monospace"><br></font></div><div><font face="monospace">I sent the log for this. This is the output:</font></div><div><font face="monospace"><br></font></div><div><font face="monospace">18:16 (cb53a04...) ~/petsc-karl$ ../arch-summit-opt64idx-pgi-cuda.py PETSC_DIR=$PWD<br>===============================================================================<br> Configuring PETSc to compile on your system <br>===============================================================================<br>=============================================================================== ***** WARNING: F77 (set to /autofs/nccs-svm1_sw/summit/.swci/0-core/opt/spack/20180914/linux-rhel7-ppc64le/gcc-4.8.5/pgi-19.4-6acz4xyqjlpoaonjiiqjme2aknrfnzoy/linux use ./configure F77=$F77 if you really want to use that value ****** =============================================================================== =============================================================================== ***** WARNING: Using default optimization C flags -O You might consider manually setting optimal optimization flags for your system with COPTFLAGS="optimization flags" see config/examples/arch-*-opt.py for examples =============================================================================== =============================================================================== ***** WARNING: You have an older version of Gnu make, it will work, but may not support all the parallel testing options. You can install the latest Gnu make with your package manager, such as brew or macports, or use the --download-make option to get the latest Gnu make warning message ***** =============================================================================== TESTING: configureMPIEXEC from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:174) *******************************************************************************<br> UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details):<br>-------------------------------------------------------------------------------<br>Unable to run jsrun -g 1 with option "-n 1"<br>Error: It is only possible to use js commands within a job allocation unless CSM is running<br>09-25-2019 18:20:13:224 108023 main: Error initializing RM connection. Exiting.<br>*******************************************************************************<br><br>18:20 1 (cb53a04...) ~/petsc-karl$ <br></font></div><div> </div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
[note: the branch is rebased - so 'git pull' won't work -(as you can<br>
see from the "(forced update)" message - and '<>' status from git<br>
prompt on balay/fix-mpiexec-shell-escape). So perhaps its easier to<br>
deal with in detached mode - which makes this obvious]<br></blockquote><div><br></div><div>I got this <> and "fixed" it by deleting the branch and repulling it. I guess I needed to fetch also.</div><div><br></div><div>Mark</div><div> </div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
<br>
Satish<br>
<br>
<br>
On Wed, 25 Sep 2019, Mark Adams via petsc-dev wrote:<br>
<br>
> I will test this now but ....<br>
> <br>
> 17:52 balay/fix-mpiexec-shell-escape= ~/petsc-karl$ git fetch<br>
> remote: Enumerating objects: 119, done.<br>
> remote: Counting objects: 100% (119/119), done.<br>
> remote: Compressing objects: 100% (91/91), done.<br>
> remote: Total 119 (delta 49), reused 74 (delta 28)<br>
> Receiving objects: 100% (119/119), 132.88 KiB | 0 bytes/s, done.<br>
> Resolving deltas: 100% (49/49), completed with 1 local objects.<br>
> >From <a href="https://gitlab.com/petsc/petsc" rel="noreferrer" target="_blank">https://gitlab.com/petsc/petsc</a><br>
> + b5e99a5...cb53a04 balay/fix-mpiexec-shell-escape -><br>
> origin/balay/fix-mpiexec-shell-escape (forced update)<br>
> + ffdc635...7eeb5f9 jczhang/feature-sf-on-gpu -><br>
> origin/jczhang/feature-sf-on-gpu (forced update)<br>
> cb9de97..f9ff08a jolivet/fix-error-col-row -><br>
> origin/jolivet/fix-error-col-row<br>
> 40ea605..de5ad60 oanam/jacobf/cell-to-ref-mapping -><br>
> origin/oanam/jacobf/cell-to-ref-mapping<br>
> + ecac953...9fb579e stefanozampini/hypre-cuda-rebased -><br>
> origin/stefanozampini/hypre-cuda-rebased (forced update)<br>
> 18:16 balay/fix-mpiexec-shell-escape<> ~/petsc-karl$ git checkout<br>
> origin/balay/fix-mpiexec-shell-escape<br>
> Note: checking out 'origin/balay/fix-mpiexec-shell-escape'.<br>
> <br>
> You are in 'detached HEAD' state. You can look around, make experimental<br>
> changes and commit them, and you can discard any commits you make in this<br>
> state without impacting any branches by performing another checkout.<br>
> <br>
> If you want to create a new branch to retain commits you create, you may<br>
> do so (now or later) by using -b with the checkout command again. Example:<br>
> <br>
> git checkout -b new_branch_name<br>
> <br>
> HEAD is now at cb53a04... mpiexec: fix shell escape of path-to-mpiexec only<br>
> when using autodected-path. Also spectrum MPI uses OMPI_MAJOR_VERSION etc -<br>
> so check if mpiexec supports --oversubscribe - before using it.<br>
> 18:16 (cb53a04...) ~/petsc-karl$<br>
> <br>
> On Wed, Sep 25, 2019 at 5:58 PM Balay, Satish <<a href="mailto:balay@mcs.anl.gov" target="_blank">balay@mcs.anl.gov</a>> wrote:<br>
> <br>
> > Defined "VERSION_GIT" to ""v3.11.3-2242-gb5e99a5""<br>
> ><br>
> > This is not the latest state - It should be:<br>
> ><br>
> > commit cb53a042369fb946804f53931a88b58e10588da1 (HEAD -><br>
> > balay/fix-mpiexec-shell-escape, origin/balay/fix-mpiexec-shell-escape)<br>
> ><br>
> > Try:<br>
> ><br>
> > git fetch<br>
> > git checkout origin/balay/fix-mpiexec-shell-escape<br>
> ><br>
> > Satish<br>
> ><br>
> > On Wed, 25 Sep 2019, Mark Adams via petsc-dev wrote:<br>
> ><br>
> > > On Wed, Sep 25, 2019 at 4:57 PM Balay, Satish <<a href="mailto:balay@mcs.anl.gov" target="_blank">balay@mcs.anl.gov</a>> wrote:<br>
> > ><br>
> > > > On Wed, 25 Sep 2019, Mark Adams via petsc-dev wrote:<br>
> > > ><br>
> > > > > I did test this and sent the log (error).<br>
> > > ><br>
> > > > Mark,<br>
> > > ><br>
> > > > I made more changes - can you retry again - and resend log.<br>
> > > ><br>
> > > > Satish<br>
> > > ><br>
> > ><br>
> ><br>
> ><br>
> <br>
<br>
</blockquote></div></div>