<html>
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<meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
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<p>Hi Stefano,</p>
<p>ok, it will be tested tonight.</p>
<p>Meanwhile, I ran on example to extract some information you asked
for:</p>
<div class="moz-cite-prefix">Le 19-04-22 à 18:42, Stefano Zampini a
écrit :<br>
</div>
<blockquote type="cite"
cite="mid:CAGPUishJcpF3J3khD9-d2XPKdGwJBvApQZ_VoSNgCawoVLzXeQ@mail.gmail.com">
<meta http-equiv="content-type" content="text/html; charset=UTF-8">
<div dir="ltr">Eric,
<div><br>
</div>
<div>I have update (force pushed) the branch. It should be fixed
now, Can you please confirm?</div>
<div><br>
</div>
<div>Thanks</div>
</div>
<br>
<div class="gmail_quote">
<div dir="ltr" class="gmail_attr">Il giorno lun 22 apr 2019 alle
ore 09:00 Stefano Zampini <<a
href="mailto:stefano.zampini@gmail.com"
moz-do-not-send="true">stefano.zampini@gmail.com</a>> ha
scritto:<br>
</div>
<blockquote class="gmail_quote" style="margin:0px 0px 0px
0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
<div dir="auto">Eric
<div dir="auto"><br>
</div>
<div dir="auto">I'll try to reproduce your setting.</div>
<div dir="auto">Few questions.</div>
<div dir="auto"><br>
</div>
<div dir="auto">Is your AIJ matrix lA symmetric?</div>
</div>
</blockquote>
</div>
</blockquote>
No, it is not.<br>
<blockquote type="cite"
cite="mid:CAGPUishJcpF3J3khD9-d2XPKdGwJBvApQZ_VoSNgCawoVLzXeQ@mail.gmail.com">
<div class="gmail_quote">
<blockquote class="gmail_quote" style="margin:0px 0px 0px
0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
<div dir="auto">
<div dir="auto">Does it have any block size set?</div>
</div>
</blockquote>
</div>
</blockquote>
No, block size is 1.<br>
<blockquote type="cite"
cite="mid:CAGPUishJcpF3J3khD9-d2XPKdGwJBvApQZ_VoSNgCawoVLzXeQ@mail.gmail.com">
<div class="gmail_quote">
<blockquote class="gmail_quote" style="margin:0px 0px 0px
0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
<div dir="auto">
<div dir="auto">Do you get the error the first time you do
mat copy? Or in subsequent ones?</div>
</div>
</blockquote>
</div>
</blockquote>
<p>At the first MatCopy... which is following the MatConvert...</p>
<p>Thanks,</p>
<p>Eric</p>
<p><br>
</p>
<blockquote type="cite"
cite="mid:CAGPUishJcpF3J3khD9-d2XPKdGwJBvApQZ_VoSNgCawoVLzXeQ@mail.gmail.com">
<div class="gmail_quote">
<blockquote class="gmail_quote" style="margin:0px 0px 0px
0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
<div dir="auto"><br>
<br>
<div class="gmail_quote" dir="auto">
<div dir="ltr" class="gmail_attr">Il Lun 22 Apr 2019,
08:41 Éric Chamberland via petsc-dev <<a
href="mailto:petsc-dev@mcs.anl.gov" target="_blank"
moz-do-not-send="true">petsc-dev@mcs.anl.gov</a>>
ha scritto:<br>
</div>
<blockquote class="gmail_quote" style="margin:0px 0px 0px
0.8ex;border-left:1px solid
rgb(204,204,204);padding-left:1ex">
<div bgcolor="#FFFFFF">
<p>Hi,</p>
<p>the patch fixed the 1st kind of error I got ("No
support for this operation for this object type"),
but I still have all the same faulty tests now
returning the 2nd error I reported:</p>
<pre style="color:rgb(0,0,0);font-style:normal;font-variant-ligatures:normal;font-variant-caps:normal;font-weight:400;letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;word-spacing:0px;text-decoration-style:initial;text-decoration-color:initial;white-space:pre-wrap">[0]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------
[0]PETSC ERROR: Argument out of range
[0]PETSC ERROR: New nonzero at (0,1) caused a malloc
Use MatSetOption(A, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_FALSE) to turn off this check
[0]PETSC ERROR: See <a class="gmail-m_-194122663429142839m_-1248915281975005359moz-txt-link-freetext" href="http://www.mcs.anl.gov/petsc/documentation/faq.html" rel="noreferrer" target="_blank" moz-do-not-send="true">http://www.mcs.anl.gov/petsc/documentation/faq.html</a> for trouble shooting.
[0]PETSC ERROR: Petsc Release Version 3.11.1, unknown
[0]PETSC ERROR: /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/BIB/bin/<a href="http://Test.deliMEFPP.dev" rel="noreferrer" target="_blank" moz-do-not-send="true">Test.deliMEFPP.dev</a> on a named compile by Unknown Sun Apr 21 18:14:41 2019
[0]PETSC ERROR: Configure options --prefix=/opt/petsc-master_debug --with-mpi-compilers=1 --with-mpi-dir=/opt/openmpi-1.10.2 --with-cxx-dialect=C++11 --with-make-np=12 --with-shared-libraries=1 --with-debugging=yes --with-memalign=64 --with-visibility=0 --with-64-bit-indices=0 --download-ml=yes --download-mumps=yes --download-superlu=yes --download-superlu_dist=yes --download-parmetis=yes --download-ptscotch=yes --download-metis=yes --download-suitesparse=yes --download-hypre=yes --with-blaslapack-dir=/opt/intel/composer_xe_2015.2.164/mkl/lib/intel64 --with-mkl_pardiso-dir=/opt/intel/composer_xe_2015.2.164/mkl --with-mkl_cpardiso-dir=/opt/intel/composer_xe_2015.2.164/mkl --with-scalapack=1 --with-scalapack-include=/opt/intel/composer_xe_2015.2.164/mkl/include --with-scalapack-lib="-L/opt/intel/composer_xe_2015.2.164/mkl/lib/intel64 -lmkl_scalapack_lp64 -lmkl_blacs_openmpi_lp64"
[0]PETSC ERROR: #1 MatSetValues_SeqSBAIJ() line 992 in /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug/src/mat/impls/sbaij/seq/sbaij.c
[0]PETSC ERROR: #2 MatSetValues() line 1407 in /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug/src/mat/interface/matrix.c
[0]PETSC ERROR: #3 MatAXPY_BasicWithPreallocation() line 171 in /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug/src/mat/utils/axpy.c
[0]PETSC ERROR: #4 MatAXPY() line 52 in /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug/src/mat/utils/axpy.c
[0]PETSC ERROR: #5 MatAYPX() line 348 in /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug/src/mat/utils/axpy.c
[0]PETSC ERROR: #6 MatCopy_Basic() line 4044 in /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug/src/mat/interface/matrix.c
[0]PETSC ERROR: #7 MatCopy_SeqAIJ() line 2844 in /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug/src/mat/impls/aij/seq/aij.c
[0]PETSC ERROR: #8 MatCopy() line 4098 in /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug/src/mat/interface/matrix.c
</pre>
<div
class="gmail-m_-194122663429142839m_-1248915281975005359moz-cite-prefix">We
are calling a MatCopy from an aij (lA) to sbaij (lB)
matrix with DIFFERENT_NONZERO_PATTERN option.</div>
<div
class="gmail-m_-194122663429142839m_-1248915281975005359moz-cite-prefix"><br>
</div>
<div
class="gmail-m_-194122663429142839m_-1248915281975005359moz-cite-prefix">But
on first call, the SBAIJ matrix has first been
created then filled with MatConvert call:</div>
<div
class="gmail-m_-194122663429142839m_-1248915281975005359moz-cite-prefix"><br>
</div>
<div
class="gmail-m_-194122663429142839m_-1248915281975005359moz-cite-prefix">MatConvert(lA,MATSBAIJ,
MAT_INITIAL_MATRIX, &lB);</div>
<div
class="gmail-m_-194122663429142839m_-1248915281975005359moz-cite-prefix"><br>
</div>
<div
class="gmail-m_-194122663429142839m_-1248915281975005359moz-cite-prefix">I
just noticed we then do a:</div>
<div
class="gmail-m_-194122663429142839m_-1248915281975005359moz-cite-prefix">MatSetOption(lA,
MAT_SYMMETRIC, PETSC_FALSE);</div>
<div
class="gmail-m_-194122663429142839m_-1248915281975005359moz-cite-prefix">(I
have to find why???....)<br>
</div>
<div
class="gmail-m_-194122663429142839m_-1248915281975005359moz-cite-prefix"><br>
</div>
<div
class="gmail-m_-194122663429142839m_-1248915281975005359moz-cite-prefix">and
on other calls, we call the "faulty" MatCopy with
previously created matrices:</div>
<div
class="gmail-m_-194122663429142839m_-1248915281975005359moz-cite-prefix"><br>
</div>
<div
class="gmail-m_-194122663429142839m_-1248915281975005359moz-cite-prefix">MatCopy(lA,lB,DIFFERENT_NONZERO_PATTERN);</div>
<div
class="gmail-m_-194122663429142839m_-1248915281975005359moz-cite-prefix"><br>
</div>
<div
class="gmail-m_-194122663429142839m_-1248915281975005359moz-cite-prefix">which
gives the "Argument out of range" error...</div>
<div
class="gmail-m_-194122663429142839m_-1248915281975005359moz-cite-prefix"><br>
</div>
<div
class="gmail-m_-194122663429142839m_-1248915281975005359moz-cite-prefix">Thanks,</div>
<div
class="gmail-m_-194122663429142839m_-1248915281975005359moz-cite-prefix"><br>
</div>
<div
class="gmail-m_-194122663429142839m_-1248915281975005359moz-cite-prefix">Eric</div>
<div
class="gmail-m_-194122663429142839m_-1248915281975005359moz-cite-prefix"><br>
</div>
<div
class="gmail-m_-194122663429142839m_-1248915281975005359moz-cite-prefix">Le
19-04-21 à 22:52, Éric Chamberland via petsc-dev a
écrit :<br>
</div>
<blockquote type="cite">
<p>Hi Stefano,</p>
<p>sure!</p>
<p>configuration is running with your branch and
tests will begin later. I will see and share the
results tomorrow.</p>
<p>thanks! :)<br>
</p>
<p>Eric</p>
<p><br>
</p>
<div
class="gmail-m_-194122663429142839m_-1248915281975005359moz-cite-prefix">Le
19-04-21 à 17:21, Stefano Zampini a écrit :<br>
</div>
<blockquote type="cite">
<div dir="ltr">
<div dir="ltr">
<div dir="ltr">Eric</div>
<div dir="ltr"><br>
</div>
<div dir="ltr">I have opened a PRmay fix the
issues you reported <a
href="https://bitbucket.org/petsc/petsc/pull-requests/1571/fix-sbaij/diff"
rel="noreferrer" target="_blank"
moz-do-not-send="true">https://bitbucket.org/petsc/petsc/pull-requests/1571/fix-sbaij/diff</a><br>
</div>
<div>Could you please try <a
href="https://bitbucket.org/petsc/petsc/branch/stefano_zampini/fix-matcopy-sbaij"
rel="noreferrer" target="_blank"
moz-do-not-send="true">https://bitbucket.org/petsc/petsc/branch/stefano_zampini/fix-matcopy-sbaij</a>?
(off maint)</div>
<div><br>
</div>
<div>Thanks</div>
</div>
</div>
<br>
<div class="gmail_quote">
<div dir="ltr" class="gmail_attr">Il giorno ven
19 apr 2019 alle ore 23:26 Éric Chamberland
via petsc-dev <<a
href="mailto:petsc-dev@mcs.anl.gov"
rel="noreferrer" target="_blank"
moz-do-not-send="true">petsc-dev@mcs.anl.gov</a>>
ha scritto:<br>
</div>
<blockquote class="gmail_quote"
style="margin:0px 0px 0px
0.8ex;border-left:1px solid
rgb(204,204,204);padding-left:1ex">
<div bgcolor="#FFFFFF">
<p>Hi,</p>
<p>ok, I will try do to one, but since I am
on vacation right now, I will try to do it
at my return in a week.</p>
<p>I wanted to report the bug asap, so you
may figure out the problem quickly.</p>
<p>Thanks,</p>
<p>Eric</p>
<p><br>
</p>
<div
class="gmail-m_-194122663429142839m_-1248915281975005359gmail-m_7466304462959273877moz-cite-prefix">Le
19-04-19 à 19:10, Stefano Zampini via
petsc-dev a écrit :<br>
</div>
<blockquote type="cite">
<div dir="auto">Can you please send a MWE
to reproduce the errors so that I can
provide a fix?</div>
<br>
<div class="gmail_quote">
<div dir="ltr" class="gmail_attr">Il Ven
19 Apr 2019, 17:00 Matthew Knepley via
petsc-dev <<a
href="mailto:petsc-dev@mcs.anl.gov"
rel="noreferrer" target="_blank"
moz-do-not-send="true">petsc-dev@mcs.anl.gov</a>>
ha scritto:<br>
</div>
<blockquote class="gmail_quote"
style="margin:0px 0px 0px
0.8ex;border-left:1px solid
rgb(204,204,204);padding-left:1ex">
<div dir="ltr">
<div dir="ltr">
<div dir="ltr">On Fri, Apr 19,
2019 at 9:40 AM Balay, Satish
via petsc-dev <<a
href="mailto:petsc-dev@mcs.anl.gov"
rel="noreferrer noreferrer"
target="_blank"
moz-do-not-send="true">petsc-dev@mcs.anl.gov</a>>
wrote:<br>
</div>
<div class="gmail_quote">
<blockquote class="gmail_quote"
style="margin:0px 0px 0px
0.8ex;border-left:1px solid
rgb(204,204,204);padding-left:1ex">There
were a few merges in the the
past few days.<br>
<br>
For ex: <a
href="https://bitbucket.org/petsc/petsc/pull-requests/1547/add-support-for-zeroing-rows-and-columns/diff"
rel="noreferrer noreferrer
noreferrer" target="_blank"
moz-do-not-send="true">https://bitbucket.org/petsc/petsc/pull-requests/1547/add-support-for-zeroing-rows-and-columns/diff</a><br>
<br>
Perhaps you can narrow down to
the commit that triggered this
change with git bisect.<br>
</blockquote>
<div><br>
</div>
<div>I think its this commit:</div>
<div><br>
</div>
<div> <a
href="https://bitbucket.org/petsc/petsc/commits/2b4bbc58b197e97e85869bd03594884bbca73c67"
rel="noreferrer noreferrer"
target="_blank"
moz-do-not-send="true">https://bitbucket.org/petsc/petsc/commits/2b4bbc58b197e97e85869bd03594884bbca73c67</a></div>
<div><br>
</div>
<div> Matt</div>
<div> </div>
<blockquote class="gmail_quote"
style="margin:0px 0px 0px
0.8ex;border-left:1px solid
rgb(204,204,204);padding-left:1ex">
cc: Stefano<br>
<br>
Satish<br>
<br>
On Fri, 19 Apr 2019, Éric
Chamberland via petsc-dev
wrote:<br>
<br>
> Hi,<br>
> <br>
> Looks like something
pushed on master change or
broke some sbaij usages. I<br>
> have two kind off errors
with MatCopy:<br>
> <br>
> 1) MatCopy error saying:
No support for this operation
for this object type<br>
> <br>
> [0]PETSC ERROR:
--------------------- Error
Message<br>
>
--------------------------------------------------------------<br>
> [0]PETSC ERROR: No
support for this operation for
this object type<br>
> [0]PETSC ERROR: MatGetRow
is not supported for SBAIJ
matrix format. Getting<br>
> the upper triangular part
of row, run with
-mat_getrow_uppertriangular,
call<br>
>
MatSetOption(mat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE)
or<br>
>
MatGetRowUpperTriangular()<br>
> [0]PETSC ERROR: See <a
href="http://www.mcs.anl.gov/petsc/documentation/faq.html"
rel="noreferrer noreferrer
noreferrer" target="_blank"
moz-do-not-send="true">http://www.mcs.anl.gov/petsc/documentation/faq.html</a>
for<br>
> trouble shooting.<br>
> [0]PETSC ERROR: Petsc
Development GIT revision:
v3.11.1-277-g63b3610 GIT<br>
> Date: 2019-04-18 08:33:56
-0500<br>
> [0]PETSC ERROR:<br>
>
/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/BIB/bin/<a
href="http://Test.deliMEFPP.dev" rel="noreferrer noreferrer noreferrer"
target="_blank"
moz-do-not-send="true">Test.deliMEFPP.dev</a><br>
> on a named compile by
Unknown Fri Apr 19 03:19:09
2019<br>
> [0]PETSC ERROR: Configure
options
--prefix=/opt/petsc-master_debug<br>
> --with-mpi-compilers=1
--with-mpi-dir=/opt/openmpi-1.10.2<br>
> --with-cxx-dialect=C++11
--with-make-np=12
--with-shared-libraries=1<br>
> --with-debugging=yes
--with-memalign=64
--with-visibility=0<br>
> --with-64-bit-indices=0
--download-ml=yes
--download-mumps=yes<br>
> --download-superlu=yes
--download-superlu_dist=yes
--download-parmetis=yes<br>
> --download-ptscotch=yes
--download-metis=yes
--download-suitesparse=yes<br>
> --download-hypre=yes<br>
>
--with-blaslapack-dir=/opt/intel/composer_xe_2015.2.164/mkl/lib/intel64<br>
>
--with-mkl_pardiso-dir=/opt/intel/composer_xe_2015.2.164/mkl<br>
>
--with-mkl_cpardiso-dir=/opt/intel/composer_xe_2015.2.164/mkl<br>
> --with-scalapack=1<br>
>
--with-scalapack-include=/opt/intel/composer_xe_2015.2.164/mkl/include<br>
>
--with-scalapack-lib="-L/opt/intel/composer_xe_2015.2.164/mkl/lib/intel64<br>
> -lmkl_scalapack_lp64
-lmkl_blacs_openmpi_lp64"<br>
> [0]PETSC ERROR: #1
MatGetRow_SeqSBAIJ() line 281
in<br>
>
/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug/src/mat/impls/sbaij/seq/sbaij.c<br>
> [0]PETSC ERROR: #2
MatGetRow() line 574 in<br>
>
/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug/src/mat/interface/matrix.c<br>
> [0]PETSC ERROR: #3
MatAXPY_Basic_Preallocate()
line 138 in<br>
>
/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug/src/mat/utils/axpy.c<br>
> [0]PETSC ERROR: #4
MatAXPY() line 95 in<br>
>
/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug/src/mat/utils/axpy.c<br>
> [0]PETSC ERROR: #5
MatAYPX() line 384 in<br>
>
/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug/src/mat/utils/axpy.c<br>
> [0]PETSC ERROR: #6
MatCopy_Basic() line 4056 in<br>
>
/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug/src/mat/interface/matrix.c<br>
> [0]PETSC ERROR: #7
MatCopy_SeqAIJ() line 2844 in<br>
>
/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug/src/mat/impls/aij/seq/aij.c<br>
> [0]PETSC ERROR: #8
MatCopy() line 4110 in<br>
>
/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug/src/mat/interface/matrix.c<br>
> <br>
> 2) MatCopy error saying:<br>
> <br>
> Argument out of range:
New nonzero at (6,7) caused a
malloc<br>
> <br>
> [0]PETSC ERROR:
--------------------- Error
Message<br>
>
--------------------------------------------------------------<br>
> [0]PETSC ERROR: Argument
out of range<br>
> [0]PETSC ERROR: New
nonzero at (6,7) caused a
malloc<br>
> Use MatSetOption(A,
MAT_NEW_NONZERO_ALLOCATION_ERR,
PETSC_FALSE) to turn off<br>
> this check<br>
> [0]PETSC ERROR: See <a
href="http://www.mcs.anl.gov/petsc/documentation/faq.html"
rel="noreferrer noreferrer
noreferrer" target="_blank"
moz-do-not-send="true">http://www.mcs.anl.gov/petsc/documentation/faq.html</a>
for<br>
> trouble shooting.<br>
> [0]PETSC ERROR: Petsc
Development GIT revision:
v3.11.1-277-g63b3610 GIT<br>
> Date: 2019-04-18 08:33:56
-0500<br>
> [0]PETSC ERROR:<br>
>
/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/BIB/bin/<a
href="http://Test.BIBProblemeGD.dev" rel="noreferrer noreferrer
noreferrer" target="_blank"
moz-do-not-send="true">Test.BIBProblemeGD.dev</a><br>
> on a named compile by
Unknown Fri Apr 19 03:22:25
2019<br>
> [0]PETSC ERROR: Configure
options
--prefix=/opt/petsc-master_debug<br>
> --with-mpi-compilers=1
--with-mpi-dir=/opt/openmpi-1.10.2<br>
> --with-cxx-dialect=C++11
--with-make-np=12
--with-shared-libraries=1<br>
> --with-debugging=yes
--with-memalign=64
--with-visibility=0<br>
> --with-64-bit-indices=0
--download-ml=yes
--download-mumps=yes<br>
> --download-superlu=yes
--download-superlu_dist=yes
--download-parmetis=yes<br>
> --download-ptscotch=yes
--download-metis=yes
--download-suitesparse=yes<br>
> --download-hypre=yes<br>
>
--with-blaslapack-dir=/opt/intel/composer_xe_2015.2.164/mkl/lib/intel64<br>
>
--with-mkl_pardiso-dir=/opt/intel/composer_xe_2015.2.164/mkl<br>
>
--with-mkl_cpardiso-dir=/opt/intel/composer_xe_2015.2.164/mkl<br>
> --with-scalapack=1<br>
>
--with-scalapack-include=/opt/intel/composer_xe_2015.2.164/mkl/include<br>
>
--with-scalapack-lib="-L/opt/intel/composer_xe_2015.2.164/mkl/lib/intel64<br>
> -lmkl_scalapack_lp64
-lmkl_blacs_openmpi_lp64"<br>
> [0]PETSC ERROR: #1
MatSetValues_SeqSBAIJ() line
990 in<br>
>
/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug/src/mat/impls/sbaij/seq/sbaij.c<br>
> [0]PETSC ERROR: #2
MatSetValues() line 1404 in<br>
>
/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug/src/mat/interface/matrix.c<br>
> [0]PETSC ERROR: #3
MatAXPY_BasicWithPreallocation()
line 209 in<br>
>
/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug/src/mat/utils/axpy.c<br>
> [0]PETSC ERROR: #4
MatAXPY() line 96 in<br>
>
/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug/src/mat/utils/axpy.c<br>
> [0]PETSC ERROR: #5
MatAYPX() line 384 in<br>
>
/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug/src/mat/utils/axpy.c<br>
> [0]PETSC ERROR: #6
MatCopy_Basic() line 4056 in<br>
>
/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug/src/mat/interface/matrix.c<br>
> [0]PETSC ERROR: #7
MatCopy_SeqAIJ() line 2844 in<br>
>
/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug/src/mat/impls/aij/seq/aij.c<br>
> [0]PETSC ERROR: #8
MatCopy() line 4110 in<br>
>
/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug/src/mat/interface/matrix.c<br>
> <br>
> Here are my installation
logs as of april 18, at 02h00:<br>
> <br>
> <a
href="http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2019.04.18.02h00m01s_configure.log"
rel="noreferrer noreferrer
noreferrer" target="_blank"
moz-do-not-send="true">http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2019.04.18.02h00m01s_configure.log</a><br>
> <a
href="http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2019.04.18.02h00m01s_make.log"
rel="noreferrer noreferrer
noreferrer" target="_blank"
moz-do-not-send="true">http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2019.04.18.02h00m01s_make.log</a><br>
> <a
href="http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2019.04.18.02h00m01s_default.log"
rel="noreferrer noreferrer
noreferrer" target="_blank"
moz-do-not-send="true">http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2019.04.18.02h00m01s_default.log</a><br>
> <a
href="http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2019.04.18.02h00m01s_RDict.log"
rel="noreferrer noreferrer
noreferrer" target="_blank"
moz-do-not-send="true">http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2019.04.18.02h00m01s_RDict.log</a><br>
> <a
href="http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2019.04.18.02h00m01s_CMakeLists.txt"
rel="noreferrer noreferrer
noreferrer" target="_blank"
moz-do-not-send="true">http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2019.04.18.02h00m01s_CMakeLists.txt</a><br>
> <a
href="http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2019.04.18.02h00m01s_make_test.log"
rel="noreferrer noreferrer
noreferrer" target="_blank"
moz-do-not-send="true">http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2019.04.18.02h00m01s_make_test.log</a><br>
> <a
href="http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2019.04.18.02h00m01s_make_streams.log"
rel="noreferrer noreferrer
noreferrer" target="_blank"
moz-do-not-send="true">http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2019.04.18.02h00m01s_make_streams.log</a><br>
> <br>
> Thanks,<br>
> <br>
> Eric<br>
> <br>
> <br>
> <br>
</blockquote>
</div>
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<div><br>
</div>
-- <br>
<div dir="ltr"
class="gmail-m_-194122663429142839m_-1248915281975005359gmail-m_7466304462959273877m_-9048173619379337331gmail_signature">
<div dir="ltr">
<div>
<div dir="ltr">
<div>
<div dir="ltr">
<div>What most
experimenters take
for granted before
they begin their
experiments is
infinitely more
interesting than any
results to which
their experiments
lead.<br>
-- Norbert Wiener</div>
<div><br>
</div>
<div><a
href="http://www.cse.buffalo.edu/~knepley/"
rel="noreferrer
noreferrer"
target="_blank"
moz-do-not-send="true">https://www.cse.buffalo.edu/~knepley/</a><br>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</blockquote>
</div>
</blockquote>
</div>
</blockquote>
</div>
<br clear="all">
<div><br>
</div>
-- <br>
<div dir="ltr"
class="gmail-m_-194122663429142839m_-1248915281975005359gmail_signature">Stefano</div>
</blockquote>
</blockquote>
</div>
</blockquote>
</div>
</div>
</blockquote>
</div>
<br clear="all">
<div><br>
</div>
-- <br>
<div dir="ltr" class="gmail_signature">Stefano</div>
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