<html>
<head>
<meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
</head>
<body text="#000000" bgcolor="#FFFFFF">
<p>Hi Stefano,</p>
<p>sure!</p>
<p>configuration is running with your branch and tests will begin
later. I will see and share the results tomorrow.</p>
<p>thanks! :)<br>
</p>
<p>Eric</p>
<p><br>
</p>
<div class="moz-cite-prefix">Le 19-04-21 à 17:21, Stefano Zampini a
écrit :<br>
</div>
<blockquote type="cite"
cite="mid:CAGPUisjuhhVTbU2ic1Jrerd-9vU6XcK4pdd=H4BFBV=rT+zWCQ@mail.gmail.com">
<meta http-equiv="content-type" content="text/html; charset=UTF-8">
<div dir="ltr">
<div dir="ltr">
<div dir="ltr">Eric</div>
<div dir="ltr"><br>
</div>
<div dir="ltr">I have opened a PRmay fix the issues you
reported <a
href="https://bitbucket.org/petsc/petsc/pull-requests/1571/fix-sbaij/diff"
moz-do-not-send="true">https://bitbucket.org/petsc/petsc/pull-requests/1571/fix-sbaij/diff</a><br>
</div>
<div>Could you please try <a
href="https://bitbucket.org/petsc/petsc/branch/stefano_zampini/fix-matcopy-sbaij"
moz-do-not-send="true">https://bitbucket.org/petsc/petsc/branch/stefano_zampini/fix-matcopy-sbaij</a>?
(off maint)</div>
<div><br>
</div>
<div>Thanks</div>
</div>
</div>
<br>
<div class="gmail_quote">
<div dir="ltr" class="gmail_attr">Il giorno ven 19 apr 2019 alle
ore 23:26 Éric Chamberland via petsc-dev <<a
href="mailto:petsc-dev@mcs.anl.gov" moz-do-not-send="true">petsc-dev@mcs.anl.gov</a>>
ha scritto:<br>
</div>
<blockquote class="gmail_quote" style="margin:0px 0px 0px
0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
<div bgcolor="#FFFFFF">
<p>Hi,</p>
<p>ok, I will try do to one, but since I am on vacation
right now, I will try to do it at my return in a week.</p>
<p>I wanted to report the bug asap, so you may figure out
the problem quickly.</p>
<p>Thanks,</p>
<p>Eric</p>
<p><br>
</p>
<div class="gmail-m_7466304462959273877moz-cite-prefix">Le
19-04-19 à 19:10, Stefano Zampini via petsc-dev a écrit :<br>
</div>
<blockquote type="cite">
<div dir="auto">Can you please send a MWE to reproduce the
errors so that I can provide a fix?</div>
<br>
<div class="gmail_quote">
<div dir="ltr" class="gmail_attr">Il Ven 19 Apr 2019,
17:00 Matthew Knepley via petsc-dev <<a
href="mailto:petsc-dev@mcs.anl.gov" target="_blank"
moz-do-not-send="true">petsc-dev@mcs.anl.gov</a>>
ha scritto:<br>
</div>
<blockquote class="gmail_quote" style="margin:0px 0px
0px 0.8ex;border-left:1px solid
rgb(204,204,204);padding-left:1ex">
<div dir="ltr">
<div dir="ltr">
<div dir="ltr">On Fri, Apr 19, 2019 at 9:40 AM
Balay, Satish via petsc-dev <<a
href="mailto:petsc-dev@mcs.anl.gov"
rel="noreferrer" target="_blank"
moz-do-not-send="true">petsc-dev@mcs.anl.gov</a>>
wrote:<br>
</div>
<div class="gmail_quote">
<blockquote class="gmail_quote"
style="margin:0px 0px 0px
0.8ex;border-left:1px solid
rgb(204,204,204);padding-left:1ex">There were
a few merges in the the past few days.<br>
<br>
For ex: <a
href="https://bitbucket.org/petsc/petsc/pull-requests/1547/add-support-for-zeroing-rows-and-columns/diff"
rel="noreferrer noreferrer" target="_blank"
moz-do-not-send="true">https://bitbucket.org/petsc/petsc/pull-requests/1547/add-support-for-zeroing-rows-and-columns/diff</a><br>
<br>
Perhaps you can narrow down to the commit that
triggered this change with git bisect.<br>
</blockquote>
<div><br>
</div>
<div>I think its this commit:</div>
<div><br>
</div>
<div> <a
href="https://bitbucket.org/petsc/petsc/commits/2b4bbc58b197e97e85869bd03594884bbca73c67"
rel="noreferrer" target="_blank"
moz-do-not-send="true">https://bitbucket.org/petsc/petsc/commits/2b4bbc58b197e97e85869bd03594884bbca73c67</a></div>
<div><br>
</div>
<div> Matt</div>
<div> </div>
<blockquote class="gmail_quote"
style="margin:0px 0px 0px
0.8ex;border-left:1px solid
rgb(204,204,204);padding-left:1ex"> cc:
Stefano<br>
<br>
Satish<br>
<br>
On Fri, 19 Apr 2019, Éric Chamberland via
petsc-dev wrote:<br>
<br>
> Hi,<br>
> <br>
> Looks like something pushed on master
change or broke some sbaij usages. I<br>
> have two kind off errors with MatCopy:<br>
> <br>
> 1) MatCopy error saying: No support for
this operation for this object type<br>
> <br>
> [0]PETSC ERROR: ---------------------
Error Message<br>
>
--------------------------------------------------------------<br>
> [0]PETSC ERROR: No support for this
operation for this object type<br>
> [0]PETSC ERROR: MatGetRow is not
supported for SBAIJ matrix format. Getting<br>
> the upper triangular part of row, run
with -mat_getrow_uppertriangular, call<br>
>
MatSetOption(mat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE)
or<br>
> MatGetRowUpperTriangular()<br>
> [0]PETSC ERROR: See <a
href="http://www.mcs.anl.gov/petsc/documentation/faq.html"
rel="noreferrer noreferrer" target="_blank"
moz-do-not-send="true">http://www.mcs.anl.gov/petsc/documentation/faq.html</a>
for<br>
> trouble shooting.<br>
> [0]PETSC ERROR: Petsc Development GIT
revision: v3.11.1-277-g63b3610 GIT<br>
> Date: 2019-04-18 08:33:56 -0500<br>
> [0]PETSC ERROR:<br>
>
/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/BIB/bin/<a
href="http://Test.deliMEFPP.dev"
rel="noreferrer noreferrer" target="_blank"
moz-do-not-send="true">Test.deliMEFPP.dev</a><br>
> on a named compile by Unknown Fri Apr 19
03:19:09 2019<br>
> [0]PETSC ERROR: Configure options
--prefix=/opt/petsc-master_debug<br>
> --with-mpi-compilers=1
--with-mpi-dir=/opt/openmpi-1.10.2<br>
> --with-cxx-dialect=C++11
--with-make-np=12 --with-shared-libraries=1<br>
> --with-debugging=yes --with-memalign=64
--with-visibility=0<br>
> --with-64-bit-indices=0 --download-ml=yes
--download-mumps=yes<br>
> --download-superlu=yes
--download-superlu_dist=yes
--download-parmetis=yes<br>
> --download-ptscotch=yes
--download-metis=yes
--download-suitesparse=yes<br>
> --download-hypre=yes<br>
>
--with-blaslapack-dir=/opt/intel/composer_xe_2015.2.164/mkl/lib/intel64<br>
>
--with-mkl_pardiso-dir=/opt/intel/composer_xe_2015.2.164/mkl<br>
>
--with-mkl_cpardiso-dir=/opt/intel/composer_xe_2015.2.164/mkl<br>
> --with-scalapack=1<br>
>
--with-scalapack-include=/opt/intel/composer_xe_2015.2.164/mkl/include<br>
>
--with-scalapack-lib="-L/opt/intel/composer_xe_2015.2.164/mkl/lib/intel64<br>
> -lmkl_scalapack_lp64
-lmkl_blacs_openmpi_lp64"<br>
> [0]PETSC ERROR: #1 MatGetRow_SeqSBAIJ()
line 281 in<br>
>
/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug/src/mat/impls/sbaij/seq/sbaij.c<br>
> [0]PETSC ERROR: #2 MatGetRow() line 574
in<br>
>
/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug/src/mat/interface/matrix.c<br>
> [0]PETSC ERROR: #3
MatAXPY_Basic_Preallocate() line 138 in<br>
>
/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug/src/mat/utils/axpy.c<br>
> [0]PETSC ERROR: #4 MatAXPY() line 95 in<br>
>
/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug/src/mat/utils/axpy.c<br>
> [0]PETSC ERROR: #5 MatAYPX() line 384 in<br>
>
/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug/src/mat/utils/axpy.c<br>
> [0]PETSC ERROR: #6 MatCopy_Basic() line
4056 in<br>
>
/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug/src/mat/interface/matrix.c<br>
> [0]PETSC ERROR: #7 MatCopy_SeqAIJ() line
2844 in<br>
>
/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug/src/mat/impls/aij/seq/aij.c<br>
> [0]PETSC ERROR: #8 MatCopy() line 4110 in<br>
>
/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug/src/mat/interface/matrix.c<br>
> <br>
> 2) MatCopy error saying:<br>
> <br>
> Argument out of range: New nonzero at
(6,7) caused a malloc<br>
> <br>
> [0]PETSC ERROR: ---------------------
Error Message<br>
>
--------------------------------------------------------------<br>
> [0]PETSC ERROR: Argument out of range<br>
> [0]PETSC ERROR: New nonzero at (6,7)
caused a malloc<br>
> Use MatSetOption(A,
MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_FALSE)
to turn off<br>
> this check<br>
> [0]PETSC ERROR: See <a
href="http://www.mcs.anl.gov/petsc/documentation/faq.html"
rel="noreferrer noreferrer" target="_blank"
moz-do-not-send="true">http://www.mcs.anl.gov/petsc/documentation/faq.html</a>
for<br>
> trouble shooting.<br>
> [0]PETSC ERROR: Petsc Development GIT
revision: v3.11.1-277-g63b3610 GIT<br>
> Date: 2019-04-18 08:33:56 -0500<br>
> [0]PETSC ERROR:<br>
>
/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/BIB/bin/<a
href="http://Test.BIBProblemeGD.dev"
rel="noreferrer noreferrer" target="_blank"
moz-do-not-send="true">Test.BIBProblemeGD.dev</a><br>
> on a named compile by Unknown Fri Apr 19
03:22:25 2019<br>
> [0]PETSC ERROR: Configure options
--prefix=/opt/petsc-master_debug<br>
> --with-mpi-compilers=1
--with-mpi-dir=/opt/openmpi-1.10.2<br>
> --with-cxx-dialect=C++11
--with-make-np=12 --with-shared-libraries=1<br>
> --with-debugging=yes --with-memalign=64
--with-visibility=0<br>
> --with-64-bit-indices=0 --download-ml=yes
--download-mumps=yes<br>
> --download-superlu=yes
--download-superlu_dist=yes
--download-parmetis=yes<br>
> --download-ptscotch=yes
--download-metis=yes
--download-suitesparse=yes<br>
> --download-hypre=yes<br>
>
--with-blaslapack-dir=/opt/intel/composer_xe_2015.2.164/mkl/lib/intel64<br>
>
--with-mkl_pardiso-dir=/opt/intel/composer_xe_2015.2.164/mkl<br>
>
--with-mkl_cpardiso-dir=/opt/intel/composer_xe_2015.2.164/mkl<br>
> --with-scalapack=1<br>
>
--with-scalapack-include=/opt/intel/composer_xe_2015.2.164/mkl/include<br>
>
--with-scalapack-lib="-L/opt/intel/composer_xe_2015.2.164/mkl/lib/intel64<br>
> -lmkl_scalapack_lp64
-lmkl_blacs_openmpi_lp64"<br>
> [0]PETSC ERROR: #1
MatSetValues_SeqSBAIJ() line 990 in<br>
>
/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug/src/mat/impls/sbaij/seq/sbaij.c<br>
> [0]PETSC ERROR: #2 MatSetValues() line
1404 in<br>
>
/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug/src/mat/interface/matrix.c<br>
> [0]PETSC ERROR: #3
MatAXPY_BasicWithPreallocation() line 209 in<br>
>
/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug/src/mat/utils/axpy.c<br>
> [0]PETSC ERROR: #4 MatAXPY() line 96 in<br>
>
/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug/src/mat/utils/axpy.c<br>
> [0]PETSC ERROR: #5 MatAYPX() line 384 in<br>
>
/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug/src/mat/utils/axpy.c<br>
> [0]PETSC ERROR: #6 MatCopy_Basic() line
4056 in<br>
>
/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug/src/mat/interface/matrix.c<br>
> [0]PETSC ERROR: #7 MatCopy_SeqAIJ() line
2844 in<br>
>
/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug/src/mat/impls/aij/seq/aij.c<br>
> [0]PETSC ERROR: #8 MatCopy() line 4110 in<br>
>
/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug/src/mat/interface/matrix.c<br>
> <br>
> Here are my installation logs as of april
18, at 02h00:<br>
> <br>
> <a
href="http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2019.04.18.02h00m01s_configure.log"
rel="noreferrer noreferrer" target="_blank"
moz-do-not-send="true">http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2019.04.18.02h00m01s_configure.log</a><br>
> <a
href="http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2019.04.18.02h00m01s_make.log"
rel="noreferrer noreferrer" target="_blank"
moz-do-not-send="true">http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2019.04.18.02h00m01s_make.log</a><br>
> <a
href="http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2019.04.18.02h00m01s_default.log"
rel="noreferrer noreferrer" target="_blank"
moz-do-not-send="true">http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2019.04.18.02h00m01s_default.log</a><br>
> <a
href="http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2019.04.18.02h00m01s_RDict.log"
rel="noreferrer noreferrer" target="_blank"
moz-do-not-send="true">http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2019.04.18.02h00m01s_RDict.log</a><br>
> <a
href="http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2019.04.18.02h00m01s_CMakeLists.txt"
rel="noreferrer noreferrer" target="_blank"
moz-do-not-send="true">http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2019.04.18.02h00m01s_CMakeLists.txt</a><br>
> <a
href="http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2019.04.18.02h00m01s_make_test.log"
rel="noreferrer noreferrer" target="_blank"
moz-do-not-send="true">http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2019.04.18.02h00m01s_make_test.log</a><br>
> <a
href="http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2019.04.18.02h00m01s_make_streams.log"
rel="noreferrer noreferrer" target="_blank"
moz-do-not-send="true">http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2019.04.18.02h00m01s_make_streams.log</a><br>
> <br>
> Thanks,<br>
> <br>
> Eric<br>
> <br>
> <br>
> <br>
</blockquote>
</div>
<br clear="all">
<div><br>
</div>
-- <br>
<div dir="ltr"
class="gmail-m_7466304462959273877m_-9048173619379337331gmail_signature">
<div dir="ltr">
<div>
<div dir="ltr">
<div>
<div dir="ltr">
<div>What most experimenters take for
granted before they begin their
experiments is infinitely more
interesting than any results to
which their experiments lead.<br>
-- Norbert Wiener</div>
<div><br>
</div>
<div><a
href="http://www.cse.buffalo.edu/~knepley/"
rel="noreferrer" target="_blank"
moz-do-not-send="true">https://www.cse.buffalo.edu/~knepley/</a><br>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</blockquote>
</div>
</blockquote>
</div>
</blockquote>
</div>
<br clear="all">
<div><br>
</div>
-- <br>
<div dir="ltr" class="gmail_signature">Stefano</div>
</blockquote>
</body>
</html>