<div dir="ltr"><div dir="ltr"><div dir="ltr">On Fri, Apr 19, 2019 at 9:40 AM Balay, Satish via petsc-dev <<a href="mailto:petsc-dev@mcs.anl.gov">petsc-dev@mcs.anl.gov</a>> wrote:<br></div><div class="gmail_quote"><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">There were a few merges in the the past few days.<br>
<br>
For ex: <a href="https://bitbucket.org/petsc/petsc/pull-requests/1547/add-support-for-zeroing-rows-and-columns/diff" rel="noreferrer" target="_blank">https://bitbucket.org/petsc/petsc/pull-requests/1547/add-support-for-zeroing-rows-and-columns/diff</a><br>
<br>
Perhaps you can narrow down to the commit that triggered this change with git bisect.<br></blockquote><div><br></div><div>I think its this commit:</div><div><br></div><div>  <a href="https://bitbucket.org/petsc/petsc/commits/2b4bbc58b197e97e85869bd03594884bbca73c67">https://bitbucket.org/petsc/petsc/commits/2b4bbc58b197e97e85869bd03594884bbca73c67</a></div><div><br></div><div>    Matt</div><div> </div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
cc: Stefano<br>
<br>
Satish<br>
<br>
On Fri, 19 Apr 2019, Éric Chamberland via petsc-dev wrote:<br>
<br>
> Hi,<br>
> <br>
> Looks like something pushed on master change or broke some sbaij usages.  I<br>
> have two kind off errors with MatCopy:<br>
> <br>
> 1) MatCopy error saying: No support for this operation for this object type<br>
> <br>
> [0]PETSC ERROR: --------------------- Error Message<br>
> --------------------------------------------------------------<br>
> [0]PETSC ERROR: No support for this operation for this object type<br>
> [0]PETSC ERROR: MatGetRow is not supported for SBAIJ matrix format. Getting<br>
> the upper triangular part of row, run with -mat_getrow_uppertriangular, call<br>
> MatSetOption(mat,MAT_GETROW_UPPERTRIANGULAR,PETSC_TRUE) or<br>
> MatGetRowUpperTriangular()<br>
> [0]PETSC ERROR: See <a href="http://www.mcs.anl.gov/petsc/documentation/faq.html" rel="noreferrer" target="_blank">http://www.mcs.anl.gov/petsc/documentation/faq.html</a> for<br>
> trouble shooting.<br>
> [0]PETSC ERROR: Petsc Development GIT revision: v3.11.1-277-g63b3610  GIT<br>
> Date: 2019-04-18 08:33:56 -0500<br>
> [0]PETSC ERROR:<br>
> /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/BIB/bin/<a href="http://Test.deliMEFPP.dev" rel="noreferrer" target="_blank">Test.deliMEFPP.dev</a><br>
> on a  named compile by Unknown Fri Apr 19 03:19:09 2019<br>
> [0]PETSC ERROR: Configure options --prefix=/opt/petsc-master_debug<br>
> --with-mpi-compilers=1 --with-mpi-dir=/opt/openmpi-1.10.2<br>
> --with-cxx-dialect=C++11 --with-make-np=12 --with-shared-libraries=1<br>
> --with-debugging=yes --with-memalign=64 --with-visibility=0<br>
> --with-64-bit-indices=0 --download-ml=yes --download-mumps=yes<br>
> --download-superlu=yes --download-superlu_dist=yes --download-parmetis=yes<br>
> --download-ptscotch=yes --download-metis=yes --download-suitesparse=yes<br>
> --download-hypre=yes<br>
> --with-blaslapack-dir=/opt/intel/composer_xe_2015.2.164/mkl/lib/intel64<br>
> --with-mkl_pardiso-dir=/opt/intel/composer_xe_2015.2.164/mkl<br>
> --with-mkl_cpardiso-dir=/opt/intel/composer_xe_2015.2.164/mkl<br>
> --with-scalapack=1<br>
> --with-scalapack-include=/opt/intel/composer_xe_2015.2.164/mkl/include<br>
> --with-scalapack-lib="-L/opt/intel/composer_xe_2015.2.164/mkl/lib/intel64<br>
> -lmkl_scalapack_lp64 -lmkl_blacs_openmpi_lp64"<br>
> [0]PETSC ERROR: #1 MatGetRow_SeqSBAIJ() line 281 in<br>
> /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug/src/mat/impls/sbaij/seq/sbaij.c<br>
> [0]PETSC ERROR: #2 MatGetRow() line 574 in<br>
> /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug/src/mat/interface/matrix.c<br>
> [0]PETSC ERROR: #3 MatAXPY_Basic_Preallocate() line 138 in<br>
> /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug/src/mat/utils/axpy.c<br>
> [0]PETSC ERROR: #4 MatAXPY() line 95 in<br>
> /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug/src/mat/utils/axpy.c<br>
> [0]PETSC ERROR: #5 MatAYPX() line 384 in<br>
> /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug/src/mat/utils/axpy.c<br>
> [0]PETSC ERROR: #6 MatCopy_Basic() line 4056 in<br>
> /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug/src/mat/interface/matrix.c<br>
> [0]PETSC ERROR: #7 MatCopy_SeqAIJ() line 2844 in<br>
> /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug/src/mat/impls/aij/seq/aij.c<br>
> [0]PETSC ERROR: #8 MatCopy() line 4110 in<br>
> /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug/src/mat/interface/matrix.c<br>
> <br>
> 2) MatCopy error saying:<br>
> <br>
> Argument out of range: New nonzero at (6,7) caused a malloc<br>
> <br>
> [0]PETSC ERROR: --------------------- Error Message<br>
> --------------------------------------------------------------<br>
> [0]PETSC ERROR: Argument out of range<br>
> [0]PETSC ERROR: New nonzero at (6,7) caused a malloc<br>
> Use MatSetOption(A, MAT_NEW_NONZERO_ALLOCATION_ERR, PETSC_FALSE) to turn off<br>
> this check<br>
> [0]PETSC ERROR: See <a href="http://www.mcs.anl.gov/petsc/documentation/faq.html" rel="noreferrer" target="_blank">http://www.mcs.anl.gov/petsc/documentation/faq.html</a> for<br>
> trouble shooting.<br>
> [0]PETSC ERROR: Petsc Development GIT revision: v3.11.1-277-g63b3610  GIT<br>
> Date: 2019-04-18 08:33:56 -0500<br>
> [0]PETSC ERROR:<br>
> /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/BIB/bin/<a href="http://Test.BIBProblemeGD.dev" rel="noreferrer" target="_blank">Test.BIBProblemeGD.dev</a><br>
> on a  named compile by Unknown Fri Apr 19 03:22:25 2019<br>
> [0]PETSC ERROR: Configure options --prefix=/opt/petsc-master_debug<br>
> --with-mpi-compilers=1 --with-mpi-dir=/opt/openmpi-1.10.2<br>
> --with-cxx-dialect=C++11 --with-make-np=12 --with-shared-libraries=1<br>
> --with-debugging=yes --with-memalign=64 --with-visibility=0<br>
> --with-64-bit-indices=0 --download-ml=yes --download-mumps=yes<br>
> --download-superlu=yes --download-superlu_dist=yes --download-parmetis=yes<br>
> --download-ptscotch=yes --download-metis=yes --download-suitesparse=yes<br>
> --download-hypre=yes<br>
> --with-blaslapack-dir=/opt/intel/composer_xe_2015.2.164/mkl/lib/intel64<br>
> --with-mkl_pardiso-dir=/opt/intel/composer_xe_2015.2.164/mkl<br>
> --with-mkl_cpardiso-dir=/opt/intel/composer_xe_2015.2.164/mkl<br>
> --with-scalapack=1<br>
> --with-scalapack-include=/opt/intel/composer_xe_2015.2.164/mkl/include<br>
> --with-scalapack-lib="-L/opt/intel/composer_xe_2015.2.164/mkl/lib/intel64<br>
> -lmkl_scalapack_lp64 -lmkl_blacs_openmpi_lp64"<br>
> [0]PETSC ERROR: #1 MatSetValues_SeqSBAIJ() line 990 in<br>
> /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug/src/mat/impls/sbaij/seq/sbaij.c<br>
> [0]PETSC ERROR: #2 MatSetValues() line 1404 in<br>
> /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug/src/mat/interface/matrix.c<br>
> [0]PETSC ERROR: #3 MatAXPY_BasicWithPreallocation() line 209 in<br>
> /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug/src/mat/utils/axpy.c<br>
> [0]PETSC ERROR: #4 MatAXPY() line 96 in<br>
> /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug/src/mat/utils/axpy.c<br>
> [0]PETSC ERROR: #5 MatAYPX() line 384 in<br>
> /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug/src/mat/utils/axpy.c<br>
> [0]PETSC ERROR: #6 MatCopy_Basic() line 4056 in<br>
> /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug/src/mat/interface/matrix.c<br>
> [0]PETSC ERROR: #7 MatCopy_SeqAIJ() line 2844 in<br>
> /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug/src/mat/impls/aij/seq/aij.c<br>
> [0]PETSC ERROR: #8 MatCopy() line 4110 in<br>
> /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug/src/mat/interface/matrix.c<br>
> <br>
> Here are my installation logs as of april 18, at 02h00:<br>
> <br>
> <a href="http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2019.04.18.02h00m01s_configure.log" rel="noreferrer" target="_blank">http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2019.04.18.02h00m01s_configure.log</a><br>
> <a href="http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2019.04.18.02h00m01s_make.log" rel="noreferrer" target="_blank">http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2019.04.18.02h00m01s_make.log</a><br>
> <a href="http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2019.04.18.02h00m01s_default.log" rel="noreferrer" target="_blank">http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2019.04.18.02h00m01s_default.log</a><br>
> <a href="http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2019.04.18.02h00m01s_RDict.log" rel="noreferrer" target="_blank">http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2019.04.18.02h00m01s_RDict.log</a><br>
> <a href="http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2019.04.18.02h00m01s_CMakeLists.txt" rel="noreferrer" target="_blank">http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2019.04.18.02h00m01s_CMakeLists.txt</a><br>
> <a href="http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2019.04.18.02h00m01s_make_test.log" rel="noreferrer" target="_blank">http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2019.04.18.02h00m01s_make_test.log</a><br>
> <a href="http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2019.04.18.02h00m01s_make_streams.log" rel="noreferrer" target="_blank">http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2019.04.18.02h00m01s_make_streams.log</a><br>
> <br>
> Thanks,<br>
> <br>
> Eric<br>
> <br>
> <br>
> <br>
</blockquote></div><br clear="all"><div><br></div>-- <br><div dir="ltr" class="gmail_signature"><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div>What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead.<br>-- Norbert Wiener</div><div><br></div><div><a href="http://www.cse.buffalo.edu/~knepley/" target="_blank">https://www.cse.buffalo.edu/~knepley/</a><br></div></div></div></div></div></div></div></div></div>