<div dir="ltr">This thread is instructive for people who think Spack is a good system.<div><br></div><div> Matt<br><br><div class="gmail_quote"><div dir="ltr">---------- Forwarded message ---------<br>From: <strong class="gmail_sendername" dir="auto">Balay, Satish via petsc-maint</strong> <span dir="ltr"><<a href="mailto:petsc-maint@mcs.anl.gov">petsc-maint@mcs.anl.gov</a>></span><br>Date: Thu, Dec 20, 2018 at 3:01 PM<br>Subject: Re: [petsc-maint] Can't install latest version using spack, complains about superludist cxx clash<br>To: Syed, Sajid Ali <<a href="mailto:sajidsyed2021@u.northwestern.edu">sajidsyed2021@u.northwestern.edu</a>><br>Cc: Balay, Satish <<a href="mailto:balay@mcs.anl.gov">balay@mcs.anl.gov</a>>, petsc-maint <<a href="mailto:petsc-maint@mcs.anl.gov">petsc-maint@mcs.anl.gov</a>><br></div><br><br>Can you send the relavent config files?<br>
<br>
Try installing with<br>
<br>
spack install --keep-stage petsc [options]<br>
<br>
[from the build location] send:<br>
spack-build.env<br>
spack-build.out<br>
configure.log<br>
<br>
Satish<br>
<br>
On Thu, 20 Dec 2018, Sajid Ali via petsc-maint wrote:<br>
<br>
> Looking closely, I don’t understand why petsc was ever linked to libblas<br>
> and liblapack at lib64.<br>
> <br>
> Does this have anything to do with the F77 warning ?<br>
> <br>
> [sajid@xrm lib]$ ldd libpetsc.so.3.10.3<br>
> linux-vdso.so.1 => (0x00007ffc2cdef000)<br>
> libpthread.so.0 => /lib64/libpthread.so.0 (0x00007f6385ee8000)<br>
> libm.so.6 => /lib64/libm.so.6 (0x00007f6385be6000)<br>
> libdl.so.2 => /lib64/libdl.so.2 (0x00007f63859e2000)<br>
> libsuperlu_dist.so.6 =><br>
> /raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/superlu-dist-6.1.0-gi3hicljihkga7x3ew66q5xdyunmmqc3/lib/libsuperlu_dist<br>
> .so.6 (0x00007f6385724000)<br>
> libmkl_intel_lp64.so =><br>
> /raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/intel-mkl-2019.0.117-wzqlcijwx7odz2x5chembudo5leqpfh2/compilers_and_lib<br>
> raries_2019.0.117/linux/mkl/lib/intel64/libmkl_intel_lp64.so<br>
> (0x00007f6384bf3000)<br>
> libmkl_sequential.so =><br>
> /raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/intel-mkl-2019.0.117-wzqlcijwx7odz2x5chembudo5leqpfh2/compilers_and_lib<br>
> raries_2019.0.117/linux/mkl/lib/intel64/libmkl_sequential.so<br>
> (0x00007f638365a000)<br>
> libmkl_core.so =><br>
> /raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/intel-mkl-2019.0.117-wzqlcijwx7odz2x5chembudo5leqpfh2/compilers_and_libraries<br>
> _2019.0.117/linux/mkl/lib/intel64/libmkl_core.so (0x00007f637f521000)<br>
> libhdf5hl_fortran.so.100 =><br>
> /raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/hdf5-1.10.4-ltstvsxvyjue2gxfegi4nvr6c5xg3zww/lib/libhdf5hl_fortran.<br>
> so.100 (0x00007f637f304000)<br>
> libhdf5_fortran.so.100 =><br>
> /raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/hdf5-1.10.4-ltstvsxvyjue2gxfegi4nvr6c5xg3zww/lib/libhdf5_fortran.so.1<br>
> 00 (0x00007f637f0bc000)<br>
> libhdf5_hl.so.100 =><br>
> /raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/hdf5-1.10.4-ltstvsxvyjue2gxfegi4nvr6c5xg3zww/lib/libhdf5_hl.so.100<br>
> (0x0000<br>
> 7f637ee97000)<br>
> libhdf5.so.103 =><br>
> /raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/hdf5-1.10.4-ltstvsxvyjue2gxfegi4nvr6c5xg3zww/lib/libhdf5.so.103<br>
> (0x00007f637e<br>
> 8a4000)<br>
> libparmetis.so =><br>
> /raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/parmetis-4.0.3-hw3j2ss7mjsc5x5f2gaflirnuufzptil/lib/libparmetis.so<br>
> (0x00007f6<br>
> 37e66c000)<br>
> libmetis.so =><br>
> /raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/metis-5.1.0-nhgzn4kjskctzmzv35mstvd34nj2ugek/lib/libmetis.so<br>
> (0x00007f637e3fc000<br>
> )<br>
> libz.so.1 =><br>
> /raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/zlib-1.2.11-ldu43taplg2nbkxtem346zq4ibhad64i/lib/libz.so.1<br>
> (0x00007f637e1e5000)<br>
> libX11.so.6 =><br>
> /raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/libx11-1.6.5-fq4iuwdxjyckf5eqsvnistset6p4hrzm/lib/libX11.so.6<br>
> (0x00007f637deaa00<br>
> 0)<br>
> libstdc++.so.6 =><br>
> /raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-4.8.5/gcc-7.3.0-qrjpi76aeo4bysagruwwfii6oneh56lj/lib64/libstdc++.so.6<br>
> (0x00007f637d<br>
> b28000)<br>
> libmpifort.so.12 =><br>
> /raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/mpich-3.3-z5uiwmx24jylnivuhlnqjjmm674ozj6x/lib/libmpifort.so.12<br>
> (0x00007f63<br>
> 7d8ef000)<br>
> libmpi.so.12 =><br>
> /raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/mpich-3.3-z5uiwmx24jylnivuhlnqjjmm674ozj6x/lib/libmpi.so.12<br>
> (0x00007f637d39c000<br>
> )<br>
> libgfortran.so.4 =><br>
> /raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-4.8.5/gcc-7.3.0-qrjpi76aeo4bysagruwwfii6oneh56lj/lib64/libgfortran.so.4<br>
> (0x00007f<br>
> 637cfc9000)<br>
> libgcc_s.so.1 =><br>
> /raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-4.8.5/gcc-7.3.0-qrjpi76aeo4bysagruwwfii6oneh56lj/lib64/libgcc_s.so.1<br>
> (0x00007f637cdb<br>
> 1000)<br>
> libquadmath.so.0 =><br>
> /raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-4.8.5/gcc-7.3.0-qrjpi76aeo4bysagruwwfii6oneh56lj/lib64/libquadmath.so.0<br>
> (0x00007f<br>
> 637cb72000)<br>
> libc.so.6 => /lib64/libc.so.6 (0x00007f637c7af000)<br>
> /lib64/ld-linux-x86-64.so.2 (0x0000562660743000)<br>
> liblapack.so.3 => /lib64/liblapack.so.3 (0x00007f637c051000)<br>
> libblas.so.3 => /lib64/libblas.so.3 (0x00007f637bdf7000)<br>
> libmpicxx.so.12 =><br>
> /raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/mpich-3.3-z5uiwmx24jylnivuhlnqjjmm674ozj6x/lib/libmpicxx.so.12<br>
> (0x00007f637b<br>
> bd6000)<br>
> libgomp.so.1 =><br>
> /raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-4.8.5/gcc-7.3.0-qrjpi76aeo4bysagruwwfii6oneh56lj/lib64/libgomp.so.1<br>
> (0x00007f637b9a80<br>
> 00)<br>
> libxcb.so.1 =><br>
> /raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/libxcb-1.13-w3g6d3ulogwz3cxf5brw3ymiw22apkax/lib/libxcb.so.1<br>
> (0x00007f637b780000<br>
> )<br>
> libXau.so.6 =><br>
> /raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/libxau-1.0.8-kv6fes6sr7z5mu6gkmpanmzx2tmbaroc/lib/libXau.so.6<br>
> (0x00007f637b57c00<br>
> 0)<br>
> libXdmcp.so.6 =><br>
> /raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/libxdmcp-1.1.2-pogqqdhqufmv567ch6n4eipdw7wgpdui/lib/libXdmcp.so.6<br>
> (0x00007f637<br>
> b375000)<br>
> libudev.so.1 => /lib64/libudev.so.1 (0x00007f637b360000)<br>
> libxml2.so.2 => /lib64/libxml2.so.2 (0x00007f637aff6000)<br>
> librt.so.1 => /lib64/librt.so.1 (0x00007f637aded000)<br>
> libgfortran.so.3 => /lib64/libgfortran.so.3<br>
> (0x00007f637aacb000)<br>
> libcap.so.2 => /lib64/libcap.so.2 (0x00007f637a8c5000)<br>
> libdw.so.1 => /lib64/libdw.so.1 (0x00007f637a67e000)<br>
> liblzma.so.5 => /lib64/liblzma.so.5 (0x00007f637a458000)<br>
> libattr.so.1 => /lib64/libattr.so.1 (0x00007f637a252000)<br>
> libelf.so.1 => /lib64/libelf.so.1 (0x00007f637a03a000)<br>
> libbz2.so.1 => /lib64/libbz2.so.1 (0x00007f6379e2a000)<br>
> [sajid@xrm lib]$ pwd<br>
> /raid/home/sajid/packages/spack/opt/spack/linux-rhel7-x86_64/gcc-7.3.0/petsc-3.10.3-7fyzhapqnl6qkcuidwugoizr6yt4ujil/lib<br>
> <br>
</div><br clear="all"><div><br></div>-- <br><div dir="ltr" class="gmail_signature" data-smartmail="gmail_signature"><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div>What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead.<br>-- Norbert Wiener</div><div><br></div><div><a href="http://www.cse.buffalo.edu/~knepley/" target="_blank">https://www.cse.buffalo.edu/~knepley/</a><br></div></div></div></div></div></div></div></div></div>