make[1]: Entering directory '/home/petsc-3.6.4' ========================================== See documentation/faq.html and documentation/bugreporting.html for help with installation problems. Please send EVERYTHING printed out below when reporting problems. Please check the mailing list archives and consider subscribing. http://www.mcs.anl.gov/petsc/miscellaneous/mailing-lists.html ========================================== Starting on mie-hera1 at Tue, Feb 7, 2017 5:14:12 PM Machine characteristics: CYGWIN_NT-10.0 mie-hera1 2.6.1(0.305/5/3) 2016-12-16 11:55 x86_64 Cygwin ----------------------------------------- Using PETSc directory: /home/petsc-3.6.4 Using PETSc arch: first ----------------------------------------- PETSC_VERSION_RELEASE 1 PETSC_VERSION_MAJOR 3 PETSC_VERSION_MINOR 6 PETSC_VERSION_SUBMINOR 4 PETSC_VERSION_PATCH 0 PETSC_VERSION_DATE "Apr, 12, 2016" PETSC_VERSION_GIT "v3.6.4" PETSC_VERSION_DATE_GIT "2016-04-12 11:20:05 -0500" PETSC_VERSION_(MAJOR,MINOR,SUBMINOR) \ PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ ----------------------------------------- Using configure Options: --with-cc="win32fe cl" --with-fc="win32fe ifort" --with-cxx="win32fe cl" --with-mpi-include="[/cygdrive/c/PROGRA~2/MICROS~4/MPI/Include,/cygdrive/c/PROGRA~2/MICROS~4/MPI/Include/x64]" --with-mpi-lib="[/cygdrive/c/PROGRA~2/MICROS~4/MPI/Lib/x64/msmpi.lib,/cygdrive/c/PROGRA~2/MICROS~4/MPI/Lib/x64/msmpifec.lib]" --with-fftw-dir="[/cygdrive/c/cygwin64/home/fftw]" --with-hdf5-dir="[/cygdrive/c/cygwin64/home/hdf5]" --download-fblaslapack=1 --with-c2html=0 --with-debugging=0 --with-ssl=0 --with-x=0 Using configuration flags: #define INCLUDED_PETSCCONF_H #define IS_COLORING_MAX 65535 #define S_ISREG(a) (((a)&_S_IFMT) == _S_IFREG) #define W_OK 02 #define X_OK 01 #define R_OK 04 #define _USE_MATH_DEFINES 1 #define S_ISDIR(a) (((a)&_S_IFMT) == _S_IFDIR) #define STDC_HEADERS 1 #define MPIU_COLORING_VALUE MPI_UNSIGNED_SHORT #define PETSC_USE_WINDOWS_GRAPHICS 1 #define PETSC_UINTPTR_T uintptr_t #define PETSC_DEPRECATED(why) #define PETSC_HAVE_WINDOWS_H 1 #define PETSC_REPLACE_DIR_SEPARATOR '/' #define PETSC_HAVE_SETLASTERROR 1 #define PETSC_HAVE_MPI 1 #define PETSC_PREFETCH_HINT_T2 _MM_HINT_T2 #define PETSC_PREFETCH_HINT_T0 _MM_HINT_T0 #define PETSC_PREFETCH_HINT_T1 _MM_HINT_T1 #define PETSC_HAVE_FORTRAN 1 #define PETSC_DIR "C:\\cygwin64\\home\\petsc-3.6.4" #define PETSC_CANNOT_START_DEBUGGER 1 #define PETSC_HAVE_GETPROCADDRESS 1 #define PETSC_LIB_DIR "/home/petsc-3.6.4/first/lib" #define PETSC_HAVE_LARGE_INTEGER_U 1 #define PETSC_USE_ISATTY 1 #define PETSC_SLSUFFIX "" #define PETSC_FUNCTION_NAME_CXX __FUNCTION__ #define PETSC_HAVE_FBLASLAPACK 1 #define PETSC_HAVE_ATOLL 1 #define PETSC_HAVE_DOUBLE_ALIGN_MALLOC 1 #define PETSC_UNUSED #define PETSC_HAVE_FREELIBRARY 1 #define PETSC_FUNCTION_NAME_C __FUNCTION__ #define PETSC_HAVE_GETCOMPUTERNAME 1 #define PETSC_USE_SINGLE_LIBRARY 1 #define PETSC_HAVE_O_BINARY 1 #define PETSC_USE_MICROSOFT_TIME 1 #define PETSC_DIR_SEPARATOR '\\' #define PETSC_HAVE_LOADLIBRARY 1 #define PETSC_PATH_SEPARATOR ';' #define PETSC_HAVE_GETLASTERROR 1 #define PETSC_HAVE_XMMINTRIN_H 1 #define PETSC_PREFETCH_HINT_NTA _MM_HINT_NTA #define PETSC_Prefetch(a,b,c) _mm_prefetch((const char*)(a),(c)) #define PETSC_HAVE_BLASLAPACK 1 #define PETSC_HAVE_GET_USER_NAME 1 #define PETSC_HAVE_GZIP 1 #define PETSC_HAVE_MALLOC_H 1 #define PETSC_HAVE_IO_H 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_MATH_H 1 #define PETSC_HAVE_STRING_H 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_DIRECT_H 1 #define PETSC_HAVE_WINDOWSX_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_DOS_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_STDLIB_H 1 #define PETSC_HAVE_SEARCH_H 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_WS2TCPIP_H 1 #define PETSC_HAVE_LIMITS_H 1 #define PETSC_USING_F2003 1 #define PETSC_HAVE_FORTRAN_CAPS 1 #define PETSC_C_STATIC_INLINE static __inline #define PETSC_USING_F90 1 #define PETSC_HAVE_CXX_NAMESPACE 1 #define PETSC_C_RESTRICT __restrict #define PETSC_CXX_RESTRICT __restrict #define PETSC_CXX_STATIC_INLINE static inline #define PETSC_HAVE_LIBWS2_32 1 #define PETSC_HAVE_LIBMSMPI 1 #define PETSC_HAVE_LIBGDI32 1 #define PETSC_HAVE_LOG2 1 #define PETSC_HAVE_LIBADVAPI32 1 #define PETSC_HAVE_LIBFLAPACK 1 #define PETSC_HAVE_ERF 1 #define PETSC_HAVE_LIBFBLAS 1 #define PETSC_HAVE_LIBMSMPIFEC 1 #define PETSC_HAVE_LIBKERNEL32 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_HAVE_LIBUSER32 1 #define PETSC_ARCH "first" #define PETSC_CLANGUAGE_C 1 #define PETSC_USE_ERRORCHECKING 1 #define PETSC_SIZEOF_MPI_COMM 4 #define PETSC_BITS_PER_BYTE 8 #define PETSC_SIZEOF_MPI_FINT 4 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_RETSIGTYPE void #define PETSC_HAVE___INT64 1 #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_SIZEOF_LONG 4 #define PETSC_USE_FORTRANKIND 1 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_uid_t int #define PETSC_SIZEOF_CHAR 1 #define PETSC_SIZEOF_DOUBLE 8 #define PETSC_SIZEOF_FLOAT 4 #define PETSC_gid_t int #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE__SET_OUTPUT_FORMAT 1 #define PETSC_HAVE_SIGNAL 1 #define PETSC_HAVE__LSEEK 1 #define PETSC_HAVE_VFPRINTF 1 #define PETSC_HAVE__GETCWD 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE__SLEEP 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE__VSNPRINTF 1 #define PETSC_HAVE_VPRINTF 1 #define PETSC_HAVE__ACCESS 1 #define PETSC_HAVE_STRICMP 1 #define PETSC_HAVE__SNPRINTF 1 #define PETSC_SIGNAL_CAST #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_BLASLAPACK_CAPS 1 #define PETSC_HAVE_MPI_COMM_C2F 1 #define PETSC_HAVE_MPI_COMBINER_CONTIGUOUS 1 #define PETSC_HAVE_MPI_EXSCAN 1 #define PETSC_HAVE_MPI_COMM_F2C 1 #define PETSC_HAVE_MPI_FINT 1 #define PETSC_HAVE_MPI_F90MODULE 1 #define PETSC_HAVE_MPI_TYPE_GET_ENVELOPE 1 #define PETSC_HAVE_MPI_FINALIZED 1 #define PETSC_HAVE_MPI_COMM_SPAWN 1 #define PETSC_HAVE_MPI_TYPE_GET_EXTENT 1 #define PETSC_HAVE_MPI_COMBINER_DUP 1 #define PETSC_HAVE_MPI_WIN_CREATE 1 #define PETSC_HAVE_MPI_REPLACE 1 #define PETSC_HAVE_MPI_TYPE_DUP 1 #define PETSC_HAVE_MPIIO 1 #define PETSC_HAVE_MPI_INIT_THREAD 1 #define PETSC_HAVE_MPI_ALLTOALLW 1 #define PETSC_HAVE_MPI_IN_PLACE 1 #define PETSC_USE_INFO 1 #define PETSC_Alignx(a,b) #define PETSC_USE_BACKWARD_LOOP 1 #define PETSC_IS_COLOR_VALUE_TYPE_SIZE PETSC_SIZEOF_SHORT #define PETSC_USE_MALLOC_COALESCED 1 #define PETSC_USE_LOG 1 #define PETSC_IS_COLOR_VALUE_TYPE short #define PETSC_USE_CTABLE 1 #define PETSC_MEMALIGN 16 #define PETSC_USE_SCALAR_REAL 1 #define PETSC_HAVE_ISNAN 1 #define PETSC_HAVE_ISNORMAL 1 #define PETSC_HAVE__ISNAN 1 #define PETSC_HAVE__FINITE 1 #define PETSC_USE_REAL_DOUBLE 1 #define PETSC_HAVE_ISINF 1 #define PETSC_HAVE_SHARED_LIBRARIES 1 #define PETSC_LEVEL1_DCACHE_LINESIZE 32 #define PETSC_LEVEL1_DCACHE_SIZE 32768 #define PETSC_LEVEL1_DCACHE_ASSOC 2 #define PETSC__BSD_SOURCE 1 #define PETSC__DEFAULT_SOURCE 1 #define PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT 1 #define PETSC_USE_PROC_FOR_SIZE 1 #define PETSC_MISSING_SIGUSR2 1 #define PETSC_MISSING_SIGURG 1 #define PETSC_MISSING_SIGPIPE 1 #define PETSC_MISSING_SIGHUP 1 #define PETSC_MISSING_SIGSTOP 1 #define PETSC_MISSING_SIGSYS 1 #define PETSC_MISSING_SIGCONT 1 #define PETSC_HAVE_WSAGETLASTERROR 1 #define PETSC_HAVE_CLOSESOCKET 1 #define PETSC_MISSING_SIGTSTP 1 #define PETSC_MISSING_SIGCHLD 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_MISSING_SIGUSR1 1 #define PETSC_MISSING_SIGTRAP 1 #define PETSC_MISSING_SIGQUIT 1 #define PETSC_MISSING_SIGBUS 1 #define PETSC_HAVE_WINSOCK2_H 1 #define PETSC_MISSING_SIGALRM 1 #define PETSC_NEEDS_UTYPE_TYPEDEFS 1 #define PETSC_MISSING_SIGKILL 1 ----------------------------------------- Using C/C++ compile: /home/petsc-3.6.4/bin/win32fe/win32fe cl -c -MT -wd4996 -O2 -I/home/petsc-3.6.4/include -I/home/petsc-3.6.4/first/include -I/cygdrive/c/PROGRA~2/MICROS~4/MPI/Include -I/cygdrive/c/PROGRA~2/MICROS~4/MPI/Include/x64 Using Fortran compile: /home/petsc-3.6.4/bin/win32fe/win32fe ifort -c -MT -O3 -fpp -I/home/petsc-3.6.4/include -I/home/petsc-3.6.4/first/include -I/cygdrive/c/PROGRA~2/MICROS~4/MPI/Include -I/cygdrive/c/PROGRA~2/MICROS~4/MPI/Include/x64 make[1]: [makefile:95: info] Segmentation fault (ignored) Using C/C++ linker: /home/petsc-3.6.4/bin/win32fe/win32fe cl Using C/C++ flags: -MT -wd4996 -O2 Using Fortran linker: /home/petsc-3.6.4/bin/win32fe/win32fe ifort Using Fortran flags: -MT -O3 -fpp ----------------------------------------- Using libraries: -L/home/petsc-3.6.4/first/lib -lpetsc -lflapack -lfblas /cygdrive/c/PROGRA~2/MICROS~4/MPI/Lib/x64/msmpi.lib /cygdrive/c/PROGRA~2/MICROS~4/MPI/Lib/x64/msmpifec.lib Gdi32.lib User32.lib Advapi32.lib Kernel32.lib Ws2_32.lib ------------------------------------------ Using mpiexec: mpiexec ========================================== Building PETSc using GNU Make with 4 build threads ========================================== make[2]: Entering directory '/home/petsc-3.6.4' Use "/usr/bin/make V=1" to see the verbose compile lines. CC first/obj/src/sys/info/verboseinfo.o verboseinfo.c C:\cygwin64\home\PETSC-~1.4\include\petscsys.h(122) : fatal error C1189: #error : "PETSc was configured with MPICH but now appears to be compiling using a non-MPICH mpi.h" make[2]: *** [gmakefile:161: first/obj/src/sys/info/verboseinfo.o] Error 2 make[2]: *** Waiting for unfinished jobs.... make[2]: Leaving directory '/home/petsc-3.6.4' make[1]: *** [/home/petsc-3.6.4/lib/petsc/conf/rules:107: gnumake] Error 2 make[1]: Leaving directory '/home/petsc-3.6.4' **************************ERROR************************************* Error during compile, check first/lib/petsc/conf/make.log Send it and first/lib/petsc/conf/configure.log to petsc-maint@mcs.anl.gov ******************************************************************** Finishing at: Tue, Feb 7, 2017 5:14:17 PM