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I'm trying to install DAMASK and in order to prevent compatibility issues i have to try to install 3.6.<br>
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Get <a href="https://aka.ms/ghei36">Outlook for Android</a></p>
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<div id="x_divRplyFwdMsg" dir="ltr"><font face="Calibri, sans-serif" color="#000000" style="font-size:11pt"><b>From:</b> Satish Balay <balay@mcs.anl.gov><br>
<b>Sent:</b> Monday, February 6, 2017 11:34:00 PM<br>
<b>To:</b> petsc-dev<br>
<b>Cc:</b> Mohammad S Dodaran<br>
<b>Subject:</b> Re: [petsc-dev] install petsc on windows 10 with mpi</font>
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<div class="PlainText">BTW: Why not use petsc-3.7?<br>
<br>
Satish<br>
<br>
On Mon, 6 Feb 2017, Satish Balay wrote:<br>
<br>
> Please send the logs for the case that is supporsed to work - but failed.<br>
> <br>
> without the relavent logs - I have no idea what failed.<br>
> <br>
> Satish<br>
> <br>
> On Mon, 6 Feb 2017, Mohammad S Dodaran wrote:<br>
> <br>
> > As i stated in my previous email.<br>
> > " i tried to make with and without intel-mpi ENV . in both cases the error had been changed." And the error didnt have any thing to do with intel_mpi ENV. Do you still want me to remove the intel_ mpi env and send you the log file?<br>
> > <br>
> > Get Outlook for Android<<a href="https://aka.ms/ghei36">https://aka.ms/ghei36</a>><br>
> > <br>
> > <br>
> > ________________________________<br>
> > From: Satish Balay <balay@mcs.anl.gov><br>
> > Sent: Monday, February 6, 2017 11:15:19 PM<br>
> > To: petsc-dev<br>
> > Cc: Mohammad S Dodaran<br>
> > Subject: Re: [petsc-dev] install petsc on windows 10 with mpi<br>
> > <br>
> > never mind.<br>
> > <br>
> > >>>>>>>>>>>>>><br>
> > #line 2416 "c:\\program files (x86)\\intelswtools\\compilers_and_libraries_2017.1.143\\windows\\mpi\\intel64\\include\\mpi.h"^M<br>
> > ^M<br>
> > #line 2418 "c:\\program files (x86)\\intelswtools\\compilers_and_libraries_2017.1.143\\windows\\mpi\\intel64\\include\\mpi.h"^M<br>
> > ^M<br>
> > #line 4 "C:\\cygwin64\\tmp\\PE5639~1\\CONFIG~1.MPI\\conftest.c"^M<br>
> > int mpich_ver = 30200300;<br>
> > Defined "HAVE_MPICH_NUMVERSION" to "30200300"<br>
> > Checking for functions [MPI_Alltoallw] in library ['/cygdrive/c/PROGRA~2/MICROS~4/MPI/Lib/x64/msmpi.lib', '/cygdrive/c/PROGRA~2/MICROS~4/MPI/Lib/x64/ms\<br>
> > mpifec.lib'] []<br>
> > Pushing language C<br>
> > <br>
> > <<<<<<<<<<<br>
> > <br>
> > Its still picking up mpi.h from intel MPI<br>
> > <br>
> > >>>>>>>>>>>><br>
> > INCLUDE=C:\Program Files (x86)\IntelSWTools\compilers_and_libraries_2017.1.143\windows\compiler\include;C:\Program Files (x86)\IntelSWTools\compilers_and_libraries_2017.1.143\windows\compiler\include\intel64;C:\Program Files (x86)\Microsoft Visual Studio
12.0\VC\INCLUDE;C:\Program Files (x86)\Microsoft Visual Studio 12.0\VC\ATLMFC\INCLUDE;C:\Program Files (x86)\Windows Kits\8.1\include\shared;C:\Program Files (x86)\Windows Kits\8.1\include\um;C:\Program Files (x86)\Windows Kits\8.1\include\winrt;C:\Program
Files (x86)\IntelSWTools\compilers_and_libraries_2017.1.143\windows\mpi\intel64\bin\..\..\intel64\include;C:\Program Files (x86)\IntelSWTools\compilers_and_libraries_2017.1.143\windows\ipp\include;C:\Program Files (x86)\IntelSWTools\compilers_and_libraries_2017.1.143\windows\mkl\include;C:\Program
Files (x86)\IntelSWTools\compilers_and_libraries_2017.1.143\windows\tbb\bin\..\include;C:\Program Files (x86)\IntelSWTools\compilers_and_libraries_2017.1.143\windows\daal\include;C:\Program Files (x86)\IntelSWTools\itac_2017\include;C:\Program Files (x86)\IntelSWTools\compilers_and_libraries_2017.1.143\windows\mpi\intel64\bin\..\..\intel64\include;<br>
> > <<<<<<<<<<<<br>
> > <br>
> > The env has "C:\Program Files (x86)\IntelSWTools\compilers_and_libraries_2017.1.143\windows\mpi\intel64\bin\..\..\intel64\include" from where mpi.h is getting picked up.<br>
> > <br>
> > If you can't remove it perhaps you can try using it instead of MSMPI<br>
> > <br>
> > Satish<br>
> > <br>
> > <br>
> > On Mon, 6 Feb 2017, Satish Balay wrote:<br>
> > <br>
> > > can you also send make.log?<br>
> > ><br>
> > > Satish<br>
> > ><br>
> > > On Mon, 6 Feb 2017, Mohammad S Dodaran wrote:<br>
> > ><br>
> > > > i was trying to repair my parallel_studio_xe_2017. then i configure it once again and then i tried to make with and without intel-mpi ENV . in both cases the error had been changed. i have attached the configure.log<br>
> > > ><br>
> > > > ________________________________<br>
> > > > From: Satish Balay <balay@mcs.anl.gov><br>
> > > > Sent: Monday, February 6, 2017 10:10:43 PM<br>
> > > > To: Mohammad S Dodaran<br>
> > > > Cc: petsc-dev<br>
> > > > Subject: Re: [petsc-dev] install petsc on windows 10 with mpi<br>
> > > ><br>
> > > > Them Intel-MPI was not removed. You can resend configure.log to confirm..<br>
> > > ><br>
> > > > Satish<br>
> > > ><br>
> > > > On Mon, 6 Feb 2017, Mohammad S Dodaran wrote:<br>
> > > ><br>
> > > > > I removed the INTEL-MPI from the environmental variables and I still have the same problem. When I configure it looks like it accepts the mpi_include and mpi_lib but when I want to build , it says the configure was with mpi but in build it appears
to compile is using a non-mpich.<br>
> > > > ><br>
> > > > > Mohammad<br>
> > > > ><br>
> > > > > ________________________________<br>
> > > > > From: Satish Balay <balay@mcs.anl.gov><br>
> > > > > Sent: Monday, February 6, 2017 6:13:04 PM<br>
> > > > > To: Mohammad S Dodaran<br>
> > > > > Cc: petsc-dev<br>
> > > > > Subject: Re: [petsc-dev] install petsc on windows 10 with mpi<br>
> > > > ><br>
> > > > > 1. configure.log is a cygwin simlink - so native mail app is unable to<br>
> > > > > attach correctly. The actual file is in<br>
> > > > > PETSC_DIR/PETSC_ARCH/lib/petsc/conf<br>
> > > > ><br>
> > > > > 2. Suggest doing the build without fftw and hdf5 packages [once the<br>
> > > > > basic build succeeds - you can look at adding these pacakges.]<br>
> > > > ><br>
> > > > > 3. remove INTEL-MPI from your env - before running configure. [you<br>
> > > > > might be able to use intel-mpi instead of ms-mpi - but we don't have<br>
> > > > > any experience with it]<br>
> > > > ><br>
> > > > > Satish<br>
> > > > ><br>
> > > > > On Mon, 6 Feb 2017, Mohammad S Dodaran wrote:<br>
> > > > ><br>
> > > > > > now I'm trying to configure petsc 3.7<br>
> > > > > > i used the format you showd in your previous email for the directories of fftw and hdf5 as below<br>
> > > > > ><br>
> > > > > > --with-fftw-dir=/cygdrive/c/cygwin64/home/fftw --with-hdf5-dir=/cygdrive/c/cygwin64/home/hdf5<br>
> > > > > ><br>
> > > > > > the result is the following<br>
> > > > > ><br>
> > > > > > TESTING: alternateConfigureLibrary from config.packages.glut(config/BuildSystem/config/package.py:742) TESTING: alternateConfigureLibrary from config.packages.giflib(config/BuildSystem/config/package.py:742) TESTING:
alternateConfigureLibrary from config.packages.scientificpython(config/BuildSystem/config/package.py:742) TESTING: alternateConfigureLibrary from config.packages.fiat(config/BuildSystem/config/package.py:742) TESTING: configureLibrary
from config.packages.fftw(config/BuildSystem/config/package.py:679) *******************************************************************************<br>
> > > > > > UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details):<br>
> > > > > > -------------------------------------------------------------------------------<br>
> > > > > > --with-fftw-dir=/cygdrive/c/cygwin64/home/fftw did not work<br>
> > > > > > *******************************************************************************<br>
> > > > > ><br>
> > > > > > i also attached the configure.log<br>
> > > > > ><br>
> > > > > ><br>
> > > > > > ________________________________<br>
> > > > > > From: Satish Balay <balay@mcs.anl.gov><br>
> > > > > > Sent: Monday, February 6, 2017 4:28:09 PM<br>
> > > > > > To: Mohammad S Dodaran<br>
> > > > > > Cc: Matthew Knepley; petsc-dev<br>
> > > > > > Subject: Re: [petsc-dev] install petsc on windows 10 with mpi<br>
> > > > > ><br>
> > > > > > >>>><br>
> > > > > ><br>
> > > > > > Configure Options: --configModules=PETSc.Configure --optionsModule=config.compilerOptions --with-cc="win32fe cl" --with-fc="win32fe ifort" --with-cxx="win32fe cl" --with-mpi-include="[/cygdrive/c/PROGRA~2/MICROS~4/MPI/Include,/cygdrive/c/PROGRA~2/MICROS~4/MPI/Include/x64]"
--with-mpi-lib="[/cygdrive/c/PROGRA~2/MICROS~4/MPI/Lib/x64/msmpi.lib,/cygdrive/c/PROGRA~2/MICROS~4/MPI/Lib/x64/msmpifec.lib]" --with-fftw-dir="[/cygdrive/c/cygwin64/home/fftw]" --with-hdf5-dir="[/cygdrive/c/cygwin64/home/hdf5]" --download-fblaslapack=1 --with-c2html=0
--with-debugging=0 --with-ssl=0 --with-x=0 PETSC_ARCH= PETSC_DIR=/home/petsc-3.6.4<br>
> > > > > > <<<<<br>
> > > > > ><br>
> > > > > > > 'PETSC_ARCH='<br>
> > > > > ><br>
> > > > > > Can you rerun with a non-empty PETSC_ARCH string - or let configure choost default..<br>
> > > > > ><br>
> > > > > > > --with-fftw-dir="[/cygdrive/c/cygwin64/home/fftw]" --with-hdf5-dir="[/cygdrive/c/cygwin64/home/hdf5]"<br>
> > > > > ><br>
> > > > > > I don't think I've built these packages with MS compilers<br>
> > > > > > before. Somehow they are not picked up anyway. For one - the format<br>
> > > > > > here should be the following [but I don't know if that will make<br>
> > > > > > configure check for them]:<br>
> > > > > ><br>
> > > > > > --with-fftw-dir=/cygdrive/c/cygwin64/home/fftw --with-hdf5-dir=/cygdrive/c/cygwin64/home/hdf5<br>
> > > > > ><br>
> > > > > > > PETSC_DIR=/home/petsc-3.6.4<br>
> > > > > ><br>
> > > > > > Also - please use latest petsc-3.7 release.<br>
> > > > > ><br>
> > > > > > > C:\cygwin64\home\PETSC-~1.4\include\petscsys.h(122) : fatal error C1189: #error : "PETSc was configured with MPICH but<br>
> > > > > > > now appears to be compiling using a non-MPICH mpi.h"<br>
> > > > > ><br>
> > > > > > Hm - configure is picking up Intel-MPI from your 'INCLUDE' env<br>
> > > > > > variable - but not 'make' - not sure whats hapenning - but I think its<br>
> > > > > > best to start a clean build with petsc-3.7 [unless you need 3.6 for a<br>
> > > > > > specific need]<br>
> > > > > ><br>
> > > > > > Satish<br>
> > > > > ><br>
> > > > > > On Mon, 6 Feb 2017, Mohammad S Dodaran wrote:<br>
> > > > > ><br>
> > > > > > > hello<br>
> > > > > > ><br>
> > > > > > ><br>
> > > > > > > i configured petsc and i was trying to make then this error appeared<br>
> > > > > > ><br>
> > > > > > ><br>
> > > > > > > Using mpiexec: mpiexec<br>
> > > > > > > ==========================================<br>
> > > > > > > Building PETSc using GNU Make with 4 build threads<br>
> > > > > > > ==========================================<br>
> > > > > > > make[2]: Entering directory '/home/petsc-3.6.4'<br>
> > > > > > > /usr/bin/python ./config/gmakegen.py --petsc-arch=../petsc-3.6.4<br>
> > > > > > > Use "/usr/bin/make V=1" to see the verbose compile lines.<br>
> > > > > > > CC ../petsc-3.6.4/obj/src/sys/info/verboseinfo.o<br>
> > > > > > > CC ../petsc-3.6.4/obj/src/sys/info/ftn-auto/verboseinfof.o<br>
> > > > > > > CC ../petsc-3.6.4/obj/src/sys/info/ftn-custom/zverboseinfof.o<br>
> > > > > > > CC ../petsc-3.6.4/obj/src/sys/ftn-custom/zsys.o<br>
> > > > > > > verboseinfo.c<br>
> > > > > > > C:\cygwin64\home\PETSC-~1.4\include\petscsys.h(122) : fatal error C1189: #error : "PETSc was configured with MPICH but<br>
> > > > > > > now appears to be compiling using a non-MPICH mpi.h"<br>
> > > > > > > make[2]: *** [gmakefile:161: ../petsc-3.6.4/obj/src/sys/info/verboseinfo.o] Error 2<br>
> > > > > > > make[2]: *** Waiting for unfinished jobs....<br>
> > > > > > > verboseinfof.c<br>
> > > > > > > C:\cygwin64\home\PETSC-~1.4\include\petscsys.h(122) : fatal error C1189: #error : "PETSc was configured with MPICH but<br>
> > > > > > > now appears to be compiling using a non-MPICH mpi.h"<br>
> > > > > > > make[2]: *** [gmakefile:161: ../petsc-3.6.4/obj/src/sys/info/ftn-auto/verboseinfof.o] Error 2<br>
> > > > > > > zverboseinfof.c<br>
> > > > > > > C:\cygwin64\home\PETSC-~1.4\include\petscsys.h(122) : fatal error C1189: #error : "PETSc was configured with MPICH but<br>
> > > > > > > now appears to be compiling using a non-MPICH mpi.h"<br>
> > > > > > > make[2]: *** [gmakefile:161: ../petsc-3.6.4/obj/src/sys/info/ftn-custom/zverboseinfof.o] Error 2<br>
> > > > > > > zsys.c<br>
> > > > > > > C:\cygwin64\home\PETSC-~1.4\include\petscsys.h(122) : fatal error C1189: #error : "PETSc was configured with MPICH but<br>
> > > > > > > now appears to be compiling using a non-MPICH mpi.h"<br>
> > > > > > > make[2]: *** [gmakefile:161: ../petsc-3.6.4/obj/src/sys/ftn-custom/zsys.o] Error 2<br>
> > > > > > > make[2]: Leaving directory '/home/petsc-3.6.4'<br>
> > > > > > > make[1]: *** [/home/petsc-3.6.4/lib/petsc/conf/rules:107: gnumake] Error 2<br>
> > > > > > > make[1]: Leaving directory '/home/petsc-3.6.4'<br>
> > > > > > > **************************ERROR*************************************<br>
> > > > > > > Error during compile, check ../petsc-3.6.4/lib/petsc/conf/make.log<br>
> > > > > > > Send it and ../petsc-3.6.4/lib/petsc/conf/configure.log to petsc-maint@mcs.anl.gov<br>
> > > > > > > ********************************************************************<br>
> > > > > > > make: *** [makefile:30: all] Error 1<br>
> > > > > > ><br>
> > > > > > > i have also attached the configure.log and make.log<br>
> > > > > > ><br>
> > > > > > > regards<br>
> > > > > > > Mohammad<br>
> > > > > > ><br>
> > > > > > ><br>
> > > > > > ><br>
> > > > > > > ________________________________<br>
> > > > > > > From: Matthew Knepley <knepley@gmail.com><br>
> > > > > > > Sent: Monday, February 6, 2017 8:07:41 AM<br>
> > > > > > > To: Mohammad S Dodaran<br>
> > > > > > > Cc: petsc-dev<br>
> > > > > > > Subject: Re: [petsc-dev] install petsc on windows 10 with mpi<br>
> > > > > > ><br>
> > > > > > > On Sun, Feb 5, 2017 at 11:26 PM, Mohammad S Dodaran <mdodar1@lsu.edu<mailto:mdodar1@lsu.edu>> wrote:<br>
> > > > > > ><br>
> > > > > > > Satish,<br>
> > > > > > ><br>
> > > > > > > Thanks for your quick response. as you see I can ls to the directory:<br>
> > > > > > ><br>
> > > > > > > ls /cygdrive/c/Program\ Files\ \(x86\)/Microsoft\ SDKs/MPI/Include/<br>
> > > > > > ><br>
> > > > > > > Yes, but as Satish said, there are spaces in the path above. We do not allow spaces in the path.<br>
> > > > > > > You cannot give a path to configure with spaces.<br>
> > > > > > ><br>
> > > > > > > You can remove the spaces using the cygpath command that Satish showed. Please use that command.<br>
> > > > > > > Remove the spaces from this path and give the spaceless path to configure.<br>
> > > > > > ><br>
> > > > > > > Thanks,<br>
> > > > > > ><br>
> > > > > > > Matt<br>
> > > > > > ><br>
> > > > > > > mpi.f90 mpi.h mpif.h mpio.h mspms.h pmidbg.h x64/ x86/<br>
> > > > > > ><br>
> > > > > > ><br>
> > > > > > ><br>
> > > > > > > but I do not know why still it has the same problem. and my configure file looks strange.<br>
> > > > > > ><br>
> > > > > > > Best,<br>
> > > > > > ><br>
> > > > > > > Mohammad<br>
> > > > > > ><br>
> > > > > > > ________________________________<br>
> > > > > > > From: Satish Balay <balay@mcs.anl.gov<mailto:balay@mcs.anl.gov>><br>
> > > > > > > Sent: Sunday, February 5, 2017 10:58:35 PM<br>
> > > > > > > To: Mohammad S Dodaran<br>
> > > > > > > Cc: petsc-dev@mcs.anl.gov<mailto:petsc-dev@mcs.anl.gov><br>
> > > > > > > Subject: Re: [petsc-dev] install petsc on windows 10 with mpi<br>
> > > > > > ><br>
> > > > > > > Try to figureout path without spaces.<br>
> > > > > > ><br>
> > > > > > > cygpath -u `cygpath -s -m PATH`<br>
> > > > > > ><br>
> > > > > > > Make sure you can do "ls" on this path.<br>
> > > > > > ><br>
> > > > > > > And use it with petsc configure.<br>
> > > > > > ><br>
> > > > > > > balay@ps4 ~<br>
> > > > > > > $ cygpath -u `cygpath -s -m /cygdrive/c/Program\ Files\ \(x86\)/Microsoft\ SDKs/MPI/Include`<br>
> > > > > > > /cygdrive/c/PROGRA~2/MICROS~2/MPI/Include<br>
> > > > > > ><br>
> > > > > > > balay@ps4 ~<br>
> > > > > > > $ ls /cygdrive/c/PROGRA~2/MICROS~2/MPI/Include<br>
> > > > > > > mpi.f90 mpi.h mpif.h mpio.h mspms.h pmidbg.h x64 x86<br>
> > > > > > ><br>
> > > > > > > balay@ps4 ~<br>
> > > > > > > $<br>
> > > > > > ><br>
> > > > > > > For ex: - I use:<br>
> > > > > > ><br>
> > > > > > > >>>>>>>><br>
> > > > > > > $ cat config/examples/arch-mswin-intel.py<br>
> > > > > > > #!/usr/bin/python<br>
> > > > > > > if __name__ == '__main__':<br>
> > > > > > > import sys<br>
> > > > > > > import os<br>
> > > > > > > sys.path.insert(0, os.path.abspath('config'))<br>
> > > > > > > import configure<br>
> > > > > > > configure_options = [<br>
> > > > > > > '--download-fblaslapack=1',<br>
> > > > > > > '--with-cc=win32fe icl',<br>
> > > > > > > '--with-cxx=win32fe icl',<br>
> > > > > > > '--with-fc=win32fe ifort',<br>
> > > > > > > '--with-mpi-include=[/cygdrive/c/PROGRA~2/MICROS~2/MPI/Include/,/cygdrive/c/PROGRA~2/MICROS~2/MPI/Include/x64]',<br>
> > > > > > > '--with-mpi-lib=[/cygdrive/c/PROGRA~2/MICROS~2/MPI/lib/x64/msmpifec.lib,/cygdrive/c/PROGRA~2/MICROS~2/MPI/lib/x64/msmpi.lib]',<br>
> > > > > > > '--with-mpiexec=/cygdrive/c/PROGRA~1/MICROS~2/Bin/mpiexec',<br>
> > > > > > > '--with-shared-libraries=0',<br>
> > > > > > > 'DATAFILESPATH=c:/cygwin64/home/petsc/datafiles',<br>
> > > > > > > ]<br>
> > > > > > > configure.petsc_configure(configure_options)<br>
> > > > > > ><br>
> > > > > > > <<<<<<<<<<<<br>
> > > > > > ><br>
> > > > > > > if you still have issues - send us configure.log for the failure.<br>
> > > > > > ><br>
> > > > > > > Satish<br>
> > > > > > ><br>
> > > > > > > On Sun, 5 Feb 2017, Mohammad S Dodaran wrote:<br>
> > > > > > ><br>
> > > > > > > > Dear Petsc developers,<br>
> > > > > > > ><br>
> > > > > > > > I am trying to install Petsc on windows 10 but I have a problem. I installed MS-MPI v8<<a href="http://go.microsoft.com/FWLink/p/?LinkID=389556">http://go.microsoft.com/FWLink/p/?LinkID=389556</a>> separately and in the configure options I
use<br>
> > > > > > > ><br>
> > > > > > > > --with-mpi-include="/cygdrive/c/Program\ Files\ \(x86\)/Microsoft\ SDKs/MPI/Include" --with-mpi-lib="/cygdrive/c/Program\ Files\ \(x86\)/Microsoft\ SDKs/MPI/Lib/x64/msmpi.lib"<br>
> > > > > > > ><br>
> > > > > > > ><br>
> > > > > > > > But it gives error which says:<br>
> > > > > > > ><br>
> > > > > > > > ***************************************************************<br>
> > > > > > > > ERROR in COMMAND LINE ARGUMENT to ./configure<br>
> > > > > > > > -------------------------------------------------------------------------------<br>
> > > > > > > > Invalid directory: [/cygdrive/c/Program\ Files\ \(x86\)/Microsoft\ SDKs/MPI/Include for key with-mpi-include<br>
> > > > > > > ><br>
> > > > > > > ><br>
> > > > > > > > How should I solve it?<br>
> > > > > > > ><br>
> > > > > > > > Mohammad<br>
> > > > > > > ><br>
> > > > > > ><br>
> > > > > > ><br>
> > > > > > ><br>
> > > > > > ><br>
> > > > > > > --<br>
> > > > > > > What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead.<br>
> > > > > > > -- Norbert Wiener<br>
> > > > > > ><br>
> > > > > ><br>
> > > > > ><br>
> > > > ><br>
> > > > ><br>
> > > ><br>
> > > ><br>
> > ><br>
> > ><br>
> > <br>
> <br>
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