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<div>now I'm trying to configure petsc 3.7</div>
<div><span style="font-size:12pt">i used the format you showd in your previous email for the directories of fftw and hdf5 as below</span><br>
</div>
<div><span style="color:rgb(33,33,33); font-size:13.3333px"><br>
</span></div>
<div><span style="color:rgb(33,33,33); font-size:13.3333px">--with-fftw-dir=/cygdrive/c/cygwin64/home/fftw --with-hdf5-dir=/cygdrive/c/cygwin64/home/hdf5</span><br>
</div>
<div><span style="color:rgb(33,33,33); font-size:13.3333px"><br>
</span></div>
<div><span style="color:rgb(33,33,33); font-size:13.3333px">the result is the following</span></div>
<div><span style="color:rgb(33,33,33); font-size:13.3333px">
<div><br>
</div>
<div>TESTING: alternateConfigureLibrary from config.packages.glut(config/BuildSystem/config/package.py:742) TESTING: alternateConfigureLibrary from config.packages.giflib(config/BuildSystem/config/package.py:742) TESTING: alternateConfigureLibrary
from config.packages.scientificpython(config/BuildSystem/config/package.py:742) TESTING: alternateConfigureLibrary from config.packages.fiat(config/BuildSystem/config/package.py:742) TESTING: configureLibrary from config.packages.fftw(config/BuildSystem/config/package.py:679)
*******************************************************************************</div>
<div> UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details):</div>
<div>-------------------------------------------------------------------------------</div>
<div>--with-fftw-dir=/cygdrive/c/cygwin64/home/fftw did not work</div>
<div>*******************************************************************************</div>
<br>
</span></div>
<div><span style="color:rgb(33,33,33); font-size:13.3333px">i also attached the configure.log</span></div>
<div><span style="color:rgb(33,33,33); font-size:13.3333px"><br>
</span></div>
<div><span style="color:rgb(33,33,33); font-size:13.3333px"><br>
</span></div>
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<hr tabindex="-1" style="display:inline-block; width:98%">
<div id="x_divRplyFwdMsg" dir="ltr"><font face="Calibri, sans-serif" color="#000000" style="font-size:11pt"><b>From:</b> Satish Balay <balay@mcs.anl.gov><br>
<b>Sent:</b> Monday, February 6, 2017 4:28:09 PM<br>
<b>To:</b> Mohammad S Dodaran<br>
<b>Cc:</b> Matthew Knepley; petsc-dev<br>
<b>Subject:</b> Re: [petsc-dev] install petsc on windows 10 with mpi</font>
<div> </div>
</div>
</div>
<font size="2"><span style="font-size:10pt;">
<div class="PlainText">>>>><br>
<br>
Configure Options: --configModules=PETSc.Configure --optionsModule=config.compilerOptions --with-cc="win32fe cl" --with-fc="win32fe ifort" --with-cxx="win32fe cl" --with-mpi-include="[/cygdrive/c/PROGRA~2/MICROS~4/MPI/Include,/cygdrive/c/PROGRA~2/MICROS~4/MPI/Include/x64]"
--with-mpi-lib="[/cygdrive/c/PROGRA~2/MICROS~4/MPI/Lib/x64/msmpi.lib,/cygdrive/c/PROGRA~2/MICROS~4/MPI/Lib/x64/msmpifec.lib]" --with-fftw-dir="[/cygdrive/c/cygwin64/home/fftw]" --with-hdf5-dir="[/cygdrive/c/cygwin64/home/hdf5]" --download-fblaslapack=1 --with-c2html=0
--with-debugging=0 --with-ssl=0 --with-x=0 PETSC_ARCH= PETSC_DIR=/home/petsc-3.6.4<br>
<<<<<br>
<br>
> 'PETSC_ARCH='<br>
<br>
Can you rerun with a non-empty PETSC_ARCH string - or let configure choost default..<br>
<br>
> --with-fftw-dir="[/cygdrive/c/cygwin64/home/fftw]" --with-hdf5-dir="[/cygdrive/c/cygwin64/home/hdf5]"
<br>
<br>
I don't think I've built these packages with MS compilers<br>
before. Somehow they are not picked up anyway. For one - the format<br>
here should be the following [but I don't know if that will make<br>
configure check for them]:<br>
<br>
--with-fftw-dir=/cygdrive/c/cygwin64/home/fftw --with-hdf5-dir=/cygdrive/c/cygwin64/home/hdf5<br>
<br>
> PETSC_DIR=/home/petsc-3.6.4<br>
<br>
Also - please use latest petsc-3.7 release.<br>
<br>
> C:\cygwin64\home\PETSC-~1.4\include\petscsys.h(122) : fatal error C1189: #error : "PETSc was configured with MPICH but<br>
> now appears to be compiling using a non-MPICH mpi.h"<br>
<br>
Hm - configure is picking up Intel-MPI from your 'INCLUDE' env<br>
variable - but not 'make' - not sure whats hapenning - but I think its<br>
best to start a clean build with petsc-3.7 [unless you need 3.6 for a<br>
specific need]<br>
<br>
Satish<br>
<br>
On Mon, 6 Feb 2017, Mohammad S Dodaran wrote:<br>
<br>
> hello<br>
> <br>
> <br>
> i configured petsc and i was trying to make then this error appeared<br>
> <br>
> <br>
> Using mpiexec: mpiexec<br>
> ==========================================<br>
> Building PETSc using GNU Make with 4 build threads<br>
> ==========================================<br>
> make[2]: Entering directory '/home/petsc-3.6.4'<br>
> /usr/bin/python ./config/gmakegen.py --petsc-arch=../petsc-3.6.4<br>
> Use "/usr/bin/make V=1" to see the verbose compile lines.<br>
> CC ../petsc-3.6.4/obj/src/sys/info/verboseinfo.o<br>
> CC ../petsc-3.6.4/obj/src/sys/info/ftn-auto/verboseinfof.o<br>
> CC ../petsc-3.6.4/obj/src/sys/info/ftn-custom/zverboseinfof.o<br>
> CC ../petsc-3.6.4/obj/src/sys/ftn-custom/zsys.o<br>
> verboseinfo.c<br>
> C:\cygwin64\home\PETSC-~1.4\include\petscsys.h(122) : fatal error C1189: #error : "PETSc was configured with MPICH but<br>
> now appears to be compiling using a non-MPICH mpi.h"<br>
> make[2]: *** [gmakefile:161: ../petsc-3.6.4/obj/src/sys/info/verboseinfo.o] Error 2<br>
> make[2]: *** Waiting for unfinished jobs....<br>
> verboseinfof.c<br>
> C:\cygwin64\home\PETSC-~1.4\include\petscsys.h(122) : fatal error C1189: #error : "PETSc was configured with MPICH but<br>
> now appears to be compiling using a non-MPICH mpi.h"<br>
> make[2]: *** [gmakefile:161: ../petsc-3.6.4/obj/src/sys/info/ftn-auto/verboseinfof.o] Error 2<br>
> zverboseinfof.c<br>
> C:\cygwin64\home\PETSC-~1.4\include\petscsys.h(122) : fatal error C1189: #error : "PETSc was configured with MPICH but<br>
> now appears to be compiling using a non-MPICH mpi.h"<br>
> make[2]: *** [gmakefile:161: ../petsc-3.6.4/obj/src/sys/info/ftn-custom/zverboseinfof.o] Error 2<br>
> zsys.c<br>
> C:\cygwin64\home\PETSC-~1.4\include\petscsys.h(122) : fatal error C1189: #error : "PETSc was configured with MPICH but<br>
> now appears to be compiling using a non-MPICH mpi.h"<br>
> make[2]: *** [gmakefile:161: ../petsc-3.6.4/obj/src/sys/ftn-custom/zsys.o] Error 2<br>
> make[2]: Leaving directory '/home/petsc-3.6.4'<br>
> make[1]: *** [/home/petsc-3.6.4/lib/petsc/conf/rules:107: gnumake] Error 2<br>
> make[1]: Leaving directory '/home/petsc-3.6.4'<br>
> **************************ERROR*************************************<br>
> Error during compile, check ../petsc-3.6.4/lib/petsc/conf/make.log<br>
> Send it and ../petsc-3.6.4/lib/petsc/conf/configure.log to petsc-maint@mcs.anl.gov<br>
> ********************************************************************<br>
> make: *** [makefile:30: all] Error 1<br>
> <br>
> i have also attached the configure.log and make.log<br>
> <br>
> regards<br>
> Mohammad<br>
> <br>
> <br>
> <br>
> ________________________________<br>
> From: Matthew Knepley <knepley@gmail.com><br>
> Sent: Monday, February 6, 2017 8:07:41 AM<br>
> To: Mohammad S Dodaran<br>
> Cc: petsc-dev<br>
> Subject: Re: [petsc-dev] install petsc on windows 10 with mpi<br>
> <br>
> On Sun, Feb 5, 2017 at 11:26 PM, Mohammad S Dodaran <mdodar1@lsu.edu<mailto:mdodar1@lsu.edu>> wrote:<br>
> <br>
> Satish,<br>
> <br>
> Thanks for your quick response. as you see I can ls to the directory:<br>
> <br>
> ls /cygdrive/c/Program\ Files\ \(x86\)/Microsoft\ SDKs/MPI/Include/<br>
> <br>
> Yes, but as Satish said, there are spaces in the path above. We do not allow spaces in the path.<br>
> You cannot give a path to configure with spaces.<br>
> <br>
> You can remove the spaces using the cygpath command that Satish showed. Please use that command.<br>
> Remove the spaces from this path and give the spaceless path to configure.<br>
> <br>
> Thanks,<br>
> <br>
> Matt<br>
> <br>
> mpi.f90 mpi.h mpif.h mpio.h mspms.h pmidbg.h x64/ x86/<br>
> <br>
> <br>
> <br>
> but I do not know why still it has the same problem. and my configure file looks strange.<br>
> <br>
> Best,<br>
> <br>
> Mohammad<br>
> <br>
> ________________________________<br>
> From: Satish Balay <balay@mcs.anl.gov<mailto:balay@mcs.anl.gov>><br>
> Sent: Sunday, February 5, 2017 10:58:35 PM<br>
> To: Mohammad S Dodaran<br>
> Cc: petsc-dev@mcs.anl.gov<mailto:petsc-dev@mcs.anl.gov><br>
> Subject: Re: [petsc-dev] install petsc on windows 10 with mpi<br>
> <br>
> Try to figureout path without spaces.<br>
> <br>
> cygpath -u `cygpath -s -m PATH`<br>
> <br>
> Make sure you can do "ls" on this path.<br>
> <br>
> And use it with petsc configure.<br>
> <br>
> balay@ps4 ~<br>
> $ cygpath -u `cygpath -s -m /cygdrive/c/Program\ Files\ \(x86\)/Microsoft\ SDKs/MPI/Include`<br>
> /cygdrive/c/PROGRA~2/MICROS~2/MPI/Include<br>
> <br>
> balay@ps4 ~<br>
> $ ls /cygdrive/c/PROGRA~2/MICROS~2/MPI/Include<br>
> mpi.f90 mpi.h mpif.h mpio.h mspms.h pmidbg.h x64 x86<br>
> <br>
> balay@ps4 ~<br>
> $<br>
> <br>
> For ex: - I use:<br>
> <br>
> >>>>>>>><br>
> $ cat config/examples/arch-mswin-intel.py<br>
> #!/usr/bin/python<br>
> if __name__ == '__main__':<br>
> import sys<br>
> import os<br>
> sys.path.insert(0, os.path.abspath('config'))<br>
> import configure<br>
> configure_options = [<br>
> '--download-fblaslapack=1',<br>
> '--with-cc=win32fe icl',<br>
> '--with-cxx=win32fe icl',<br>
> '--with-fc=win32fe ifort',<br>
> '--with-mpi-include=[/cygdrive/c/PROGRA~2/MICROS~2/MPI/Include/,/cygdrive/c/PROGRA~2/MICROS~2/MPI/Include/x64]',<br>
> '--with-mpi-lib=[/cygdrive/c/PROGRA~2/MICROS~2/MPI/lib/x64/msmpifec.lib,/cygdrive/c/PROGRA~2/MICROS~2/MPI/lib/x64/msmpi.lib]',<br>
> '--with-mpiexec=/cygdrive/c/PROGRA~1/MICROS~2/Bin/mpiexec',<br>
> '--with-shared-libraries=0',<br>
> 'DATAFILESPATH=c:/cygwin64/home/petsc/datafiles',<br>
> ]<br>
> configure.petsc_configure(configure_options)<br>
> <br>
> <<<<<<<<<<<<br>
> <br>
> if you still have issues - send us configure.log for the failure.<br>
> <br>
> Satish<br>
> <br>
> On Sun, 5 Feb 2017, Mohammad S Dodaran wrote:<br>
> <br>
> > Dear Petsc developers,<br>
> ><br>
> > I am trying to install Petsc on windows 10 but I have a problem. I installed MS-MPI v8<<a href="http://go.microsoft.com/FWLink/p/?LinkID=389556">http://go.microsoft.com/FWLink/p/?LinkID=389556</a>> separately and in the configure options I use<br>
> ><br>
> > --with-mpi-include="/cygdrive/c/Program\ Files\ \(x86\)/Microsoft\ SDKs/MPI/Include" --with-mpi-lib="/cygdrive/c/Program\ Files\ \(x86\)/Microsoft\ SDKs/MPI/Lib/x64/msmpi.lib"<br>
> ><br>
> ><br>
> > But it gives error which says:<br>
> ><br>
> > ***************************************************************<br>
> > ERROR in COMMAND LINE ARGUMENT to ./configure<br>
> > -------------------------------------------------------------------------------<br>
> > Invalid directory: [/cygdrive/c/Program\ Files\ \(x86\)/Microsoft\ SDKs/MPI/Include for key with-mpi-include<br>
> ><br>
> ><br>
> > How should I solve it?<br>
> ><br>
> > Mohammad<br>
> ><br>
> <br>
> <br>
> <br>
> <br>
> --<br>
> What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead.<br>
> -- Norbert Wiener<br>
> <br>
<br>
</div>
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