<div dir="ltr"><div class="gmail_extra"><div class="gmail_quote">On Tue, Jan 10, 2017 at 2:47 PM, Mark Adams <span dir="ltr"><<a href="mailto:mfadams@lbl.gov" target="_blank">mfadams@lbl.gov</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><div class="gmail_quote">We have a code that is failing on large scale runs on Edison at NERSC. We ran with a debug version and we got this error message that I assume is from a check that is done in debug. Is this a false positive? This is a 64 bit integer build.</div></div></blockquote><div><br></div><div>Satish just fixed an error with hash table sizes. You can try on the latest master.</div><div><br></div><div> Thanks,</div><div><br></div><div> Matt</div><div> </div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><div class="gmail_quote">Thanks,</div><div class="gmail_quote">Mark</div><div class="gmail_quote"><br>
[5]PETSC ERROR: --------------------- Error Message ------------------------------<wbr>------------------------------<wbr>--<br>
[5]PETSC ERROR: Argument out of range<br>
[5]PETSC ERROR: A really huge hash is being requested.. cannot process: 4294967296<br>
[5]PETSC ERROR: See <a href="http://www.mcs.anl.gov/petsc/documentation/faq.html" rel="noreferrer" target="_blank">http://www.mcs.anl.gov/petsc/d<wbr>ocumentation/faq.html</a> for trouble shooting.<br>
[5]PETSC ERROR: Petsc Development GIT revision: v3.7.4-2584-g7175242 GIT Date: 2016-12-21 13:19:16 -0600<br>
[5]PETSC ERROR: /tmp/targetExec on a arch-xc30-dbg64-intel named nid00008 by u6338 Sat Jan 7 16:39:16 2017<br>
[5]PETSC ERROR: Configure options --COPTFLAGS="-O0 -g -no-ipo" --CXXOPTFLAGS="-O0 -g -no-ipo" --FOPTFLAGS="-O0 -g -ipo" --download-parmetis --download-metis --download-hypre --with-ssl=0 --with-cc=cc --with-clib-autodetect=0 --with-cxx=CC --with-cxxlib-autodetect=0 --with-debugging=1 --with-fc=ftn --with-fortranlib-autodetect=0 --with-shared-libraries=0 --with-x=0 --with-mpiexec=srun LIBS=-lstdc++ --with-64-bit-indices --prefix=/global/homes/m/madam<wbr>s/petsc_install/petscv3.7-x[16<wbr>527]PETSC ERROR: ----<br>
<br>
using:<br>
PETSC_DIR=/global/homes/m/mada<wbr>ms/petsc_install/petscv3.7-xc3<wbr>0-dbg64-intel/<br>
<br>
maybe go back to opt version?<div><div class="m_7208480984992772371m_-3879211506532536758h5"><br>
<br>
On 12/22/2016 03:22 PM, Mark Adams wrote:<br>
</div></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div><div class="m_7208480984992772371m_-3879211506532536758h5">
You configure with the size of an integer explicitly, ie,<br>
--with-64-bit-integers. I can't imagine there is anything bigger, but it<br>
would not be hard to do.<br>
<br>
On Thu, Dec 22, 2016 at 6:06 PM, David Trebotich <<a href="mailto:treb@hpcrdm.lbl.gov" target="_blank">treb@hpcrdm.lbl.gov</a>><br>
wrote:<br>
<br>
</div></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div><div class="m_7208480984992772371m_-3879211506532536758h5">
i just committed changes to SPMD that Brian needed for signed long long.<br>
Evidently petsc is now handling bigger matrices?<br>
<br>
<br>
On 12/22/2016 2:57 PM, Mark Adams wrote:<br>
<br>
There are a few hits on stack exchange, google:<br>
<br>
"error: expression must have class type"<br>
<br>
I think intputT is a templated type and it is templated with a PetscInt.<br>
You are calling the linearSize() method on a primitive type. That is my<br>
best guess.<br>
<br>
On Thu, Dec 22, 2016 at 3:33 PM, David Trebotich <<a href="mailto:treb@hpcrd.lbl.gov" target="_blank">treb@hpcrd.lbl.gov</a>><br>
wrote:<br>
<br>
</div></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div><div class="m_7208480984992772371m_-3879211506532536758h5">
building with dbg looks same:<br>
<br>
../../../Chombo/lib/src/BaseTo<wbr>ols/SPMDI.H(23): error: expression must<br>
have class type<br>
return inputT.linearSize();<br>
^<br>
detected during:<br>
instantiation of "int linearSize(const T &) [with<br>
T=PetscInt={PetscInt64={long long}}]" at line 128 of<br>
"../../../Chombo/lib/src/EBToo<wbr>ls/MiniIVFABI.H"<br>
instantiation of "int MiniIVFAB<T>::size(const Box &, const<br>
Interval &) const [with T=PetscInt={PetscInt64={long long}}]" at line 155<br>
of "../../../Chombo/lib/src/EBToo<wbr>ls/BaseEBCellFABI.H"<br>
instantiation of "int BaseEBCellFAB<T>::size(const Box &,<br>
const Interval &) const [with T=PetscInt={PetscInt64={long long}}]" at line<br>
149 of "../../../Chombo/lib/src/BoxTo<wbr>ols/BoxLayoutData.H"<br>
instantiation of "int LDOperator<T>::size(const T &, const<br>
Box &, const Interval &) const [with T=BaseEBCellFAB<PetscInt={Pets<wbr>cInt64={long<br>
long}}>]" at line 114 of "../../../Chombo/lib/src/BoxTo<wbr>ols/LevelData.H"<br>
implicit generation of "LDOperator<T>::LDOperator() [with<br>
T=BaseEBCellFAB<PetscInt={Pets<wbr>cInt64={long long}}>]" at line 114 of<br>
"../../../Chombo/lib/src/BoxTo<wbr>ols/LevelData.H"<br>
instantiation of class "LDOperator<T> [with<br>
T=BaseEBCellFAB<PetscInt={Pets<wbr>cInt64={long long}}>]" at line 114 of<br>
"../../../Chombo/lib/src/BoxTo<wbr>ols/LevelData.H"<br>
instantiation of "void LevelData<T>::copyTo(const Interval &,<br>
BoxLayoutData<T> &, const Interval &, const Copier &, const LDOperator<T><br>
&) const [with T=BaseEBCellFAB<PetscInt={Pets<wbr>cInt64={long long}}>]" at<br>
line 213 of "../../../Chombo/lib/src/BoxTo<wbr>ols/LevelDataI.H"<br>
instantiation of "void LevelData<T>::copyTo(const Interval &,<br>
BoxLayoutData<T> &, const Interval &) const [with<br>
T=BaseEBCellFAB<PetscInt={Pets<wbr>cInt64={long long}}>]" at line 32 of<br>
"../../../Chombo/lib/src/BoxTo<wbr>ols/LevelDataI.H"<br>
instantiation of "LevelData<T>::LevelData() [with<br>
T=BaseEBCellFAB<PetscInt={Pets<wbr>cInt64={long long}}>]" at line 41 of<br>
"../srcLib/EBPetscSolver.cpp"<br>
<br>
../../../Chombo/lib/src/BaseTo<wbr>ols/SPMDI.H(35): error: expression must<br>
have class type<br>
inputT.linearOut(a_outBuf);<br>
^<br>
detected during:<br>
instantiation of "void linearOut(void *, const T &) [with<br>
T=PetscInt={PetscInt64={long long}}]" at line 155 of<br>
"../../../Chombo/lib/src/EBToo<wbr>ls/MiniIVFABI.H"<br>
instantiation of "void MiniIVFAB<T>::linearOut(void *, const<br>
Box &, const Interval &) const [with T=PetscInt={PetscInt64={long long}}]"<br>
at line 169 of "../../../Chombo/lib/src/EBToo<wbr>ls/BaseEBCellFABI.H"<br>
instantiation of "void BaseEBCellFAB<T>::linearOut(vo<wbr>id *,<br>
const Box &, const Interval &) const [with T=PetscInt={PetscInt64={long<br></div></div><div><div class="m_7208480984992772371m_-3879211506532536758h5">
long}}]" at line 154 of "../../../Chombo/lib/src/BoxTo<br>
ols/BoxLayoutData.H"<br>
instantiation of "void LDOperator<T>::linearOut(const T &,<br>
void *, const Box &, const Interval &) const [with<br>
T=BaseEBCellFAB<PetscInt={Pets<wbr>cInt64={long long}}>]" at line 114 of<br>
"../../../Chombo/lib/src/BoxTo<wbr>ols/LevelData.H"<br>
implicit generation of "LDOperator<T>::LDOperator() [with<br>
T=BaseEBCellFAB<PetscInt={Pets<wbr>cInt64={long long}}>]" at line 114 of<br>
"../../../Chombo/lib/src/BoxTo<wbr>ols/LevelData.H"<br>
instantiation of class "LDOperator<T> [with<br>
T=BaseEBCellFAB<PetscInt={Pets<wbr>cInt64={long long}}>]" at line 114 of<br>
"../../../Chombo/lib/src/BoxTo<wbr>ols/LevelData.H"<br>
instantiation of "void LevelData<T>::copyTo(const Interval &,<br>
BoxLayoutData<T> &, const Interval &, const Copier &, const LDOperator<T><br>
&) const [with T=BaseEBCellFAB<PetscInt={Pets<wbr>cInt64={long long}}>]" at<br>
line 213 of "../../../Chombo/lib/src/BoxTo<wbr>ols/LevelDataI.H"<br>
instantiation of "void LevelData<T>::copyTo(const Interval &,<br>
BoxLayoutData<T> &, const Interval &) const [with<br>
T=BaseEBCellFAB<PetscInt={Pets<wbr>cInt64={long long}}>]" at line 32 of<br>
"../../../Chombo/lib/src/BoxTo<wbr>ols/LevelDataI.H"<br>
instantiation of "LevelData<T>::LevelData() [with<br>
T=BaseEBCellFAB<PetscInt={Pets<wbr>cInt64={long long}}>]" at line 41 of<br>
"../srcLib/EBPetscSolver.cpp"<br>
<br>
../../../Chombo/lib/src/BaseTo<wbr>ols/SPMDI.H(29): error: expression must<br>
have class type<br>
a_outputT.linearIn(inBuf);<br>
^<br>
detected during:<br>
instantiation of "void linearIn(T &, const void *) [with<br>
T=PetscInt={PetscInt64={long long}}]" at line 181 of<br>
"../../../Chombo/lib/src/EBToo<wbr>ls/MiniIVFABI.H"<br>
instantiation of "void MiniIVFAB<T>::linearIn(void *, const<br>
Box &, const Interval &) [with T=PetscInt={PetscInt64={long long}}]" at<br>
line 181 of "../../../Chombo/lib/src/EBToo<wbr>ls/BaseEBCellFABI.H"<br>
instantiation of "void BaseEBCellFAB<T>::linearIn(voi<wbr>d *,<br>
const Box &, const Interval &) [with T=PetscInt={PetscInt64={long long}}]"<br>
at line 159 of "../../../Chombo/lib/src/BoxTo<wbr>ols/BoxLayoutData.H"<br>
instantiation of "void LDOperator<T>::linearIn(T &, void *,<br></div></div><div><div class="m_7208480984992772371m_-3879211506532536758h5">
const Box &, const Interval &) const [with T=BaseEBCellFAB<PetscInt={Pets<wbr>cInt64={long<br>
long}}>]" at line 114 of "../../../Chombo/lib/src/BoxTo<wbr>ols/LevelData.H"<br>
implicit generation of "LDOperator<T>::LDOperator() [with<br>
T=BaseEBCellFAB<PetscInt={Pets<wbr>cInt64={long long}}>]" at line 114 of<br>
"../../../Chombo/lib/src/BoxTo<wbr>ols/LevelData.H"<br>
instantiation of class "LDOperator<T> [with<br>
T=BaseEBCellFAB<PetscInt={Pets<wbr>cInt64={long long}}>]" at line 114 of<br>
"../../../Chombo/lib/src/BoxTo<wbr>ols/LevelData.H"<br>
instantiation of "void LevelData<T>::copyTo(const Interval &,<br>
BoxLayoutData<T> &, const Interval &, const Copier &, const LDOperator<T><br>
&) const [with T=BaseEBCellFAB<PetscInt={Pets<wbr>cInt64={long long}}>]" at<br>
line 213 of "../../../Chombo/lib/src/BoxTo<wbr>ols/LevelDataI.H"<br>
instantiation of "void LevelData<T>::copyTo(const Interval &,<br>
BoxLayoutData<T> &, const Interval &) const [with<br>
T=BaseEBCellFAB<PetscInt={Pets<wbr>cInt64={long long}}>]" at line 32 of<br>
"../../../Chombo/lib/src/BoxTo<wbr>ols/LevelDataI.H"<br>
instantiation of "LevelData<T>::LevelData() [with<br>
T=BaseEBCellFAB<PetscInt={Pets<wbr>cInt64={long long}}>]" at line 41 of<br>
"../srcLib/EBPetscSolver.cpp"<br>
<br>
compilation aborted for ../srcLib/EBPetscSolver.cpp (code 2)<br>
gmake[1]: *** [o/<a href="http://3d.Linux.64.CC.ftn.DEBUG.MP" target="_blank">3d.Linux.64.CC.ftn.DEBUG.MP</a><wbr>I.PETSC/EBPetscSolver.o]<br>
Error 2<br>
<br>
<br>
On 12/22/2016 09:42 AM, Mark Adams wrote:<br>
<br>
</div></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div><div class="m_7208480984992772371m_-3879211506532536758h5">
I have build a debug version (opt64 --> dbg64). You might try that.<br>
<br>
On Wed, Dec 21, 2016 at 9:46 PM, Mark Adams <<a href="mailto:mfadams@lbl.gov" target="_blank">mfadams@lbl.gov</a>> wrote:<br>
<br>
<br>
</div></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div><div class="m_7208480984992772371m_-3879211506532536758h5">
<br>
On Wed, Dec 21, 2016 at 2:25 PM, David Trebotich <<a href="mailto:treb@hpcrd.lbl.gov" target="_blank">treb@hpcrd.lbl.gov</a>><br>
wrote:<br>
<br>
This wasn't happening until after you rebuilt petsc. So I am wondering<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
if you upgraded or changed something??<br>
<br>
</blockquote>
<br>
<br>
Humm, let me rebuild. This is on Edison I assume.<br>
<br>
Try PETSC_DIR=/global/homes/m/mada<wbr>ms/petsc_install/petscv3.7-xc3<br>
0-opt64-intel<br>
(again)<br>
<br>
This is a new build. I would also do a deep clean on your end, of<br>
course.<br>
<br>
I see a DCH_USE_COMPLEX ...<br>
<br>
Also, I would try a debug build just to get some data. This is some<br>
strange problem of something is out of synch.<br>
<br>
<br>
<br>
</div></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div><div class="m_7208480984992772371m_-3879211506532536758h5">
On 12/19/2016 05:05 PM, Mark Adams wrote:<br>
<br>
On Mon, Dec 19, 2016 at 6:35 PM, David Trebotich <<a href="mailto:treb@hpcrd.lbl.gov" target="_blank">treb@hpcrd.lbl.gov</a>><br>
</div></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div><div class="m_7208480984992772371m_-3879211506532536758h5">
wrote:<br>
<br>
I am sorry, you mean I need to add that to environment variables?<br>
<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<br>
<br>
</blockquote>
<br>
The PETSC_ARCH is hardwired for the size of integers so you would use<br>
PETSC_ARCH=arch-xc30-opt-intel to get 32 bit ints (I don't know of<br>
this<br>
installation ever being used). But now that I think about it you<br>
always<br>
use<br>
64 bit ints and you need to.<br>
<br>
So what is going on here ... it looks like an object has been<br>
templated<br>
on<br>
a PetscInt and is getting mixed up. I don't think you ever use 32 bit<br>
ints<br>
in PETSc so it looks like you regressed here... I don't have a lot of<br>
experience with templates. I'd ask Brian or Dan.<br>
<br>
<br>
<br>
<br>
</div></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div><div class="m_7208480984992772371m_-3879211506532536758h5">
On 12/19/2016 03:34 PM, Mark Adams wrote:<br>
<br>
There is a: arch-xc30-opt-intel<br>
<br>
</div></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div><div class="m_7208480984992772371m_-3879211506532536758h5">
<br>
On Mon, Dec 19, 2016 at 6:25 PM, David Trebotich <<br>
<a href="mailto:treb@hpcrd.lbl.gov" target="_blank">treb@hpcrd.lbl.gov</a>><br>
wrote:<br>
<br>
Hey Mark-<br>
<br>
We have had this issue recently and am wondering if you know what<br>
</div></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div><div class="m_7208480984992772371m_-3879211506532536758h5">
the<br>
problem is. Maybe an int vs. PetscInt vs. PetscInt64 kind of<br>
thing?<br>
<br>
CC -O2 -fast -no-ipo -std=c++11 -O3 -m64<br>
-qopt-multi-version-aggressive<br>
-restrict -m64 -std=c++11 -Wno-unknown-pragmas -diag-disable 3180<br>
-DCH_SPACEDIM=3 -DCH_Linux -DNDEBUG -DCH_MPI -DMPICH_SKIP_MPICXX<br>
-ULAM_WANT_MPI2CPP -DMPI_NO_CPPBIND -DCH_USE_COMPLEX<br>
-DCH_USE_EB<br>
-DCH_USE_MEMORY_TRACKING -DCH_USE_64 -DCH_USE_DOUBLE -DCH_USE_HDF5<br>
-I/opt/cray/hdf5-parallel/1.8.<wbr>16/INTEL/15.0/include -I.<br>
-I../srcBCG<br>
-I../srcLib -I../srcAdvectDiffuseCrunch_BC<wbr>G -I../srcCrunchFlow_BCG<br>
-I../srcCrunchFlow_BCG/modules<wbr> -DCH_USE_PETSC<br>
-I/global/homes/m/madams/petsc<wbr>_install/petscv3.6-xc30-opt64-<br>
intel/include<br>
-I/global/homes/m/madams/petsc<wbr>_install/petscv3.6-xc30-opt64-<br>
intel/include<br>
-I/global/homes/m/madams/petsc<wbr>_install/petscv3.6-xc30-opt64-<br>
intel/include<br>
-DCH_FORT_UNDERSCORE -I../../../Chombo/lib/src/EBAM<wbr>RTimeDependent<br>
-I../../../Chombo/lib/src/EBAM<wbr>RElliptic<br>
-I../../../Chombo/lib/src/EBAM<br>
RTools<br>
-I../../../Chombo/lib/src/Work<wbr>shop -I../../../Chombo/lib/src/EBTo<br>
ols<br>
-I../../../Chombo/lib/src/AMRT<wbr>imeDependent<br>
-I../../../Chombo/lib/src/AMRE<wbr>lliptic<br>
-I../../../Chombo/lib/src/AMRT<wbr>ools -I../../../Chombo/lib/src/BoxT<br>
ools<br>
-I../../../Chombo/lib/src/Base<wbr>Tools -DCH_LANG_CC -c<br>
../srcLib/EBPetscSolver.cpp -o o/3d.Linux.64.CC.ftn.OPTHIGH.M<br>
PI.PETSC/EBPetscSolver.o<br>
../../../Chombo/lib/src/BaseTo<wbr>ols/SPMDI.H(23): error: expression<br>
must<br>
have class type<br>
return inputT.linearSize();<br>
^<br>
detected during:<br>
instantiation of "int linearSize(const T &) [with<br>
T=PetscInt={PetscInt64={long long}}]" at line 128 of<br>
"../../../Chombo/lib/src/EBToo<wbr>ls/MiniIVFABI.H"<br>
instantiation of "int MiniIVFAB<T>::size(const Box &,<br>
const<br>
Interval &) const [with T=PetscInt={PetscInt64={long long}}]" at<br>
line<br>
155<br>
of "../../../Chombo/lib/src/EBToo<wbr>ls/BaseEBCellFABI.H"<br>
instantiation of "int BaseEBCellFAB<T>::size(const Box<br>
&,<br>
const Interval &) const [with T=PetscInt={PetscInt64={long<br>
long}}]" at<br>
line<br>
149 of "../../../Chombo/lib/src/BoxTo<wbr>ols/BoxLayoutData.H"<br>
instantiation of "int LDOperator<T>::size(const T &,<br>
const<br>
Box<br>
&, const Interval &) const [with T=BaseEBCellFAB<PetscInt={Pets<br>
cInt64={long<br>
long}}>]" at line 114 of "../../../Chombo/lib/src/BoxTo<br>
ols/LevelData.H"<br>
implicit generation of "LDOperator<T>::LDOperator()<br>
[with<br>
T=BaseEBCellFAB<PetscInt={Pets<wbr>cInt64={long long}}>]" at line 114<br>
of<br>
"../../../Chombo/lib/src/BoxTo<wbr>ols/LevelData.H"<br>
instantiation of class "LDOperator<T> [with<br>
T=BaseEBCellFAB<PetscInt={Pets<wbr>cInt64={long long}}>]" at line 114<br>
of<br>
"../../../Chombo/lib/src/BoxTo<wbr>ols/LevelData.H"<br>
instantiation of "void LevelData<T>::copyTo(const<br>
Interval &,<br>
BoxLayoutData<T> &, const Interval &, const Copier &, const<br>
LDOperator<T><br>
&) const [with T=BaseEBCellFAB<PetscInt={Pets<wbr>cInt64={long<br>
long}}>]"<br>
at<br>
line 213 of "../../../Chombo/lib/src/BoxTo<wbr>ols/LevelDataI.H"<br>
instantiation of "void LevelData<T>::copyTo(const<br>
Interval &,<br>
BoxLayoutData<T> &, const Interval &) const [with<br>
T=BaseEBCellFAB<PetscInt={Pets<wbr>cInt64={long long}}>]" at line 32 of<br>
"../../../Chombo/lib/src/BoxTo<wbr>ols/LevelDataI.H"<br>
instantiation of "LevelData<T>::LevelData() [with<br>
T=BaseEBCellFAB<PetscInt={Pets<wbr>cInt64={long long}}>]" at line 41 of<br>
"../srcLib/EBPetscSolver.cpp"<br>
<br>
../../../Chombo/lib/src/BaseTo<wbr>ols/SPMDI.H(35): error: expression<br>
must<br>
have class type<br>
inputT.linearOut(a_outBuf);<br>
^<br>
detected during:<br>
instantiation of "void linearOut(void *, const T &)<br>
[with<br>
T=PetscInt={PetscInt64={long long}}]" at line 155 of<br>
"../../../Chombo/lib/src/EBToo<wbr>ls/MiniIVFABI.H"<br>
instantiation of "void MiniIVFAB<T>::linearOut(void *,<br>
const<br>
Box &, const Interval &) const [with T=PetscInt={PetscInt64={long<br>
long}}]"<br>
at line 169 of "../../../Chombo/lib/src/EBToo<wbr>ls/BaseEBCellFABI.H"<br>
instantiation of "void BaseEBCellFAB<T>::linearOut(vo<br>
id<br>
*,<br>
const Box &, const Interval &) const [with<br>
T=PetscInt={PetscInt64={long<br>
long}}]" at line 154 of "../../../Chombo/lib/src/BoxTo<br>
ols/BoxLayoutData.H"<br>
instantiation of "void LDOperator<T>::linearOut(const<br>
T &,<br>
void *, const Box &, const Interval &) const [with<br>
T=BaseEBCellFAB<PetscInt={Pets<wbr>cInt64={long long}}>]" at line 114<br>
of<br>
"../../../Chombo/lib/src/BoxTo<wbr>ols/LevelData.H"<br>
implicit generation of "LDOperator<T>::LDOperator()<br>
[with<br>
T=BaseEBCellFAB<PetscInt={Pets<wbr>cInt64={long long}}>]" at line 114<br>
of<br>
"../../../Chombo/lib/src/BoxTo<wbr>ols/LevelData.H"<br>
instantiation of class "LDOperator<T> [with<br>
T=BaseEBCellFAB<PetscInt={Pets<wbr>cInt64={long long}}>]" at line 114<br>
of<br>
"../../../Chombo/lib/src/BoxTo<wbr>ols/LevelData.H"<br>
instantiation of "void LevelData<T>::copyTo(const<br>
Interval &,<br>
BoxLayoutData<T> &, const Interval &, const Copier &, const<br>
LDOperator<T><br>
&) const [with T=BaseEBCellFAB<PetscInt={Pets<wbr>cInt64={long<br>
long}}>]"<br>
at<br>
line 213 of "../../../Chombo/lib/src/BoxTo<wbr>ols/LevelDataI.H"<br>
instantiation of "void LevelData<T>::copyTo(const<br>
Interval &,<br>
BoxLayoutData<T> &, const Interval &) const [with<br>
T=BaseEBCellFAB<PetscInt={Pets<wbr>cInt64={long long}}>]" at line 32 of<br>
"../../../Chombo/lib/src/BoxTo<wbr>ols/LevelDataI.H"<br>
instantiation of "LevelData<T>::LevelData() [with<br>
T=BaseEBCellFAB<PetscInt={Pets<wbr>cInt64={long long}}>]" at line 41 of<br>
"../srcLib/EBPetscSolver.cpp"<br>
<br>
../../../Chombo/lib/src/BaseTo<wbr>ols/SPMDI.H(29): error: expression<br>
must<br>
have class type<br>
a_outputT.linearIn(inBuf);<br>
^<br>
detected during:<br>
instantiation of "void linearIn(T &, const void *)<br>
[with<br>
T=PetscInt={PetscInt64={long long}}]" at line 181 of<br>
"../../../Chombo/lib/src/EBToo<wbr>ls/MiniIVFABI.H"<br>
instantiation of "void MiniIVFAB<T>::linearIn(void *,<br>
const<br>
Box &, const Interval &) [with T=PetscInt={PetscInt64={long<br>
long}}]"<br>
at<br>
line 181 of "../../../Chombo/lib/src/EBToo<wbr>ls/BaseEBCellFABI.H"<br>
instantiation of "void BaseEBCellFAB<T>::linearIn(voi<wbr>d<br>
*,<br>
const Box &, const Interval &) [with T=PetscInt={PetscInt64={long<br>
long}}]"<br>
at line 159 of "../../../Chombo/lib/src/BoxTo<wbr>ols/BoxLayoutData.H"<br>
instantiation of "void LDOperator<T>::linearIn(T &,<br>
void<br>
*,<br>
const Box &, const Interval &) const [with<br>
T=BaseEBCellFAB<PetscInt={Pets<br>
cInt64={long<br>
long}}>]" at line 114 of "../../../Chombo/lib/src/BoxTo<br>
ols/LevelData.H"<br>
implicit generation of "LDOperator<T>::LDOperator()<br>
[with<br>
T=BaseEBCellFAB<PetscInt={Pets<wbr>cInt64={long long}}>]" at line 114<br>
of<br>
"../../../Chombo/lib/src/BoxTo<wbr>ols/LevelData.H"<br>
instantiation of class "LDOperator<T> [with<br>
T=BaseEBCellFAB<PetscInt={Pets<wbr>cInt64={long long}}>]" at line 114<br>
of<br>
"../../../Chombo/lib/src/BoxTo<wbr>ols/LevelData.H"<br>
instantiation of "void LevelData<T>::copyTo(const<br>
Interval &,<br>
BoxLayoutData<T> &, const Interval &, const Copier &, const<br>
LDOperator<T><br>
&) const [with T=BaseEBCellFAB<PetscInt={Pets<wbr>cInt64={long<br>
long}}>]"<br>
at<br>
line 213 of "../../../Chombo/lib/src/BoxTo<wbr>ols/LevelDataI.H"<br>
instantiation of "void LevelData<T>::copyTo(const<br>
Interval &,<br>
BoxLayoutData<T> &, const Interval &) const [with<br>
T=BaseEBCellFAB<PetscInt={Pets<wbr>cInt64={long long}}>]" at line 32 of<br>
"../../../Chombo/lib/src/BoxTo<wbr>ols/LevelDataI.H"<br>
instantiation of "LevelData<T>::LevelData() [with<br>
T=BaseEBCellFAB<PetscInt={Pets<wbr>cInt64={long long}}>]" at line 41 of<br>
"../srcLib/EBPetscSolver.cpp"<br>
<br>
compilation aborted for ../srcLib/EBPetscSolver.cpp (code 2)<br>
gmake[1]: *** [o/3d.Linux.64.CC.ftn.OPTHIGH.<br>
MPI.PETSC/EBPetscSolver.o]<br>
Error 2<br>
make: *** [all-example] Error 2<br>
<br>
<br>
On 12/19/2016 03:09 PM, Mark Adams wrote:<br>
<br>
Sorry cleaning up. insert "petsc_install" in the path: "...madams/<br>
<br>
petsc_install/petscv3.6..."<br>
</div></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div><div class="m_7208480984992772371m_-3879211506532536758h5">
<br>
<br>
On Mon, Dec 19, 2016 at 5:43 PM, David Trebotich <<br>
<a href="mailto:treb@hpcrd.lbl.gov" target="_blank">treb@hpcrd.lbl.gov</a><br>
<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<br>
wrote:<br>
</blockquote>
<br>
Hey Mark-<br>
<br>
<br>
I seem to have lost contact with petsc over the weekend:<br>
</div></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div><div class="m_7208480984992772371m_-3879211506532536758h5">
/global/homes/m/madams/petscv3<wbr>.6-xc30-opt64-intel//lib/<br>
petsc/conf/variables:<br>
No such file or directory<br>
Last chance .ex rule for target /global/homes/m/madams/petscv3<br>
.6-xc30-opt64-intel//lib/petsc<wbr>/conf/variables<br>
<br>
setenv | grep petsc:<br>
PE_PETSC_DEFAULT_VOLATILE_PKGC<wbr>ONFIG_PATH=/opt/cray/petsc/3.<br>
7.2.0/real/@PRGENV@/@PE_PETSC_<wbr>DEFAULT_GENCOMPS@/@PE_PETSC_<br>
DEFAULT_TARGET@/lib/pkgconfig<br>
PETSC_DIR=/global/homes/m/mada<wbr>ms/petscv3.6-xc30-opt64-intel/<br>
<br>
<br>
Currently Loaded Modulefiles:<br>
1) modules/<a href="http://3.2.10.4" rel="noreferrer" target="_blank">3.2.10.4</a> 8) intel/<a href="http://15.0.1.133" rel="noreferrer" target="_blank">15.0.1.133</a><br>
15) xpmem/<a href="http://0.1-2.0502.57015.1.15.ar" target="_blank">0.1-2.0502.57015.1.15.ar</a><wbr>i 22)<br>
cray-mpich/7.4.1<br>
2) nsg/1.2.0 9)<br>
cray-libsci/16.07.1<br>
16) dvs/2.5_0.9.0-1.0502.1958.2.55<wbr>.ari 23) slurm/edison<br>
3) eswrap/1.3.3-1.020200.1278.0 10)<br>
udreg/2.3.2-1.0502.9889.2.20.a<wbr>ri 17)<br>
alps/5.2.3-2.0502.9295.14.14.a<br>
ri<br>
24) altd/2.0<br>
4) switch/1.0-1.0502.57058.1.58.a<wbr>ri 11)<br>
ugni/6.0-1.0502.10245.9.9.ari 18) rca/<br>
<a href="http://1.0.0-2.0502.57212.2.56.ar" rel="noreferrer" target="_blank">1.0.0-2.0502.57212.2.56.ar</a><br>
i<br>
25) darshan/2.3.1<br>
5) craype-ivybridge 12) pmi/<br>
5.0.10-1.0000.11050.0.0.ari 19) atp/2.0.2 26)<br>
emacs/24.2<br>
6) craype-network-aries 13)<br>
dmapp/7.0.1-1.0502.10246.8.47.<wbr>ari 20) PrgEnv-intel/5.2.56<br>
27)<br>
cray-hdf5-parallel/1.8.16<br>
7) craype/2.4.2 14)<br>
gni-headers/4.0-1.0502.10317.9<wbr>.2.ari 21) cray-shmem/7.4.1<br>
<br>
Thanks.<br>
<br>
treb<br>
<br>
--<br>
David Trebotich<br>
Applied Numerical Algorithms Group<br>
Lawrence Berkeley National Laboratory<br>
</div></div><a href="tel:%28510%29%20486-5984" value="+15104865984" target="_blank">(510) 486-5984</a> <%28510%29%20486-5984<wbr>> office<br>
<a href="tel:%28510%29%20384-6868" value="+15103846868" target="_blank">(510) 384-6868</a> <%28510%29%20384-6868<wbr>> mobile<br>
<br>
<br>
<br>
<br>
--<br>
<br>
</blockquote>
<br>
David Trebotich<br>
</blockquote><span>
Applied Numerical Algorithms Group<br>
Lawrence Berkeley National Laboratory<br>
</span><a href="tel:%28510%29%20486-5984" value="+15104865984" target="_blank">(510) 486-5984</a> <%28510%29%20486-5984<wbr>> office<br>
<a href="tel:%28510%29%20384-6868" value="+15103846868" target="_blank">(510) 384-6868</a> <%28510%29%20384-6868<wbr>> mobile<br>
<br>
<br>
<br>
<br>
--<br>
</blockquote>
<br>
</blockquote><span>
David Trebotich<br>
Applied Numerical Algorithms Group<br>
Lawrence Berkeley National Laboratory<br>
</span><a href="tel:%28510%29%20486-5984" value="+15104865984" target="_blank">(510) 486-5984</a> <%28510%29%20486-5984<wbr>> office<br>
<a href="tel:%28510%29%20384-6868" value="+15103846868" target="_blank">(510) 384-6868</a> <%28510%29%20384-6868<wbr>> mobile<br>
<br>
<br>
<br>
<br>
</blockquote>
--<br>
</blockquote><span>
David Trebotich<br>
Applied Numerical Algorithms Group<br>
Lawrence Berkeley National Laboratory<br>
</span><a href="tel:%28510%29%20486-5984" value="+15104865984" target="_blank">(510) 486-5984</a> <%28510%29%20486-5984<wbr>> office<br>
<a href="tel:%28510%29%20384-6868" value="+15103846868" target="_blank">(510) 384-6868</a> <%28510%29%20384-6868<wbr>> mobile<br>
<br>
<br>
<br>
</blockquote>
<br>
</blockquote>
<br>
</blockquote><span>
--<br>
David Trebotich<br>
Applied Numerical Algorithms Group<br>
Lawrence Berkeley National Laboratory<br>
<a href="tel:%28510%29%20486-5984" value="+15104865984" target="_blank">(510) 486-5984</a> office<br>
<a href="tel:%28510%29%20384-6868" value="+15103846868" target="_blank">(510) 384-6868</a> mobile<br>
<br>
<br><span class="HOEnZb"><font color="#888888">
</font></span></span></blockquote><span class="HOEnZb"><font color="#888888"><span>
<br>
--<br>
David Trebotich<br>
Applied Numerical Algorithms Group<br>
Computational Research Division<br></span>
Lawrence Berkeley National Laboratory<a href="tel:%28510%29%20486-5984" value="+15104865984" target="_blank">(510) 486-5984</a> office<a href="tel:%28510%29%20384-6868" value="+15103846868" target="_blank">(510) 384-6868</a> mobile<br>
<br>
<br>
</font></span></blockquote><span class="HOEnZb"><font color="#888888">
<br>
</font></span></blockquote><span class="HOEnZb"><font color="#888888"><div class="m_7208480984992772371m_-3879211506532536758HOEnZb"><div class="m_7208480984992772371m_-3879211506532536758h5">
<br>
-- <br>
David Trebotich<br>
Applied Numerical Algorithms Group<br>
Lawrence Berkeley National Laboratory<br>
<a href="tel:%28510%29%20486-5984" value="+15104865984" target="_blank">(510) 486-5984</a> office<br>
<a href="tel:%28510%29%20384-6868" value="+15103846868" target="_blank">(510) 384-6868</a> mobile<br>
<br>
</div></div></font></span></div><br></div>
</blockquote></div><br><br clear="all"><div><br></div>-- <br><div class="gmail_signature" data-smartmail="gmail_signature">What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead.<br>-- Norbert Wiener</div>
</div></div>