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Hi,<br>
<br>
the make install error occurred again last night, but with a
different error:<br>
<br>
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<pre> CC arch-linux2-c-debug/obj/src/tao/leastsquares/impls/pounders/gqt.o
CLINKER /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug/arch-linux2-c-debug/lib/libpetsc.so.3.06.3
gmake[2]: Leaving directory `/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug'
=========================================
gmake[1]: Leaving directory `/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug'
Now to install the libraries do:
make PETSC_DIR=/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug PETSC_ARCH=arch-linux2-c-debug install
=========================================
*** Using PETSC_DIR=/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug PETSC_ARCH=arch-linux2-c-debug ***
No cached configure in RDict at /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug/arch-linux2-c-debug/lib/petsc/conf/RDict.db
Traceback (most recent call last):
File "./config/install.py", line 380, in <module>
Installer(sys.argv[1:]).run()
File "./config/install.py", line 373, in run
self.runsetup()
File "./config/install.py", line 334, in runsetup
self.setup()
File "./config/install.py", line 60, in setup
self.setupModules()
File "./config/install.py", line 51, in setupModules
self.setCompilers = self.framework.require('config.setCompilers', None)
AttributeError: 'NoneType' object has no attribute 'require'
make: *** [install] Error 1
</pre>
<br>
Here are the logs:<br>
<br>
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<pre><a class="moz-txt-link-freetext" href="http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2016.03.09.02h00m02s_configure.log">http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2016.03.09.02h00m02s_configure.log</a>
<meta http-equiv="content-type" content="text/html; charset=iso-8859-15"><a class="moz-txt-link-freetext" href="http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2016.03.09.02h00m02s_default.log">http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2016.03.09.02h00m02s_default.log</a>
<meta http-equiv="content-type" content="text/html; charset=iso-8859-15"><a class="moz-txt-link-freetext" href="http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2016.03.09.02h00m02s_RDict.log">http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2016.03.09.02h00m02s_RDict.log</a>
<a class="moz-txt-link-freetext" href="http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2016.03.09.02h00m02s_make.log">http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2016.03.09.02h00m02s_make.log</a>
<a class="moz-txt-link-freetext" href="http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2016.03.09.02h00m02s_CMakeLists.txt">http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2016.03.09.02h00m02s_CMakeLists.txt</a>
And the log from our scripts, with "env" output at the beginning:
<a class="moz-txt-link-freetext" href="http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2016.03.09.02h00m02s.script.log">http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2016.03.09.02h00m02s.script.log</a>
May I launch a the make install with some debugging variables activated to see more output that might help?
I can also launch the scripts in a while loop until it bug again to help dig this problem...
Thanks,
Eric
<pre></pre><pre></pre>
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<div class="moz-cite-prefix">Le 16-03-03 20:35, Éric Chamberland a écrit :
</div><blockquote cite="mid:56D8E677.3000109@giref.ulaval.ca" type="cite">Hi,
it's weird. I launched my compilation script on another computer, and
everything was fine with the petsc-master.tar.gz...
So I launched it on the faulty computer, but it installed with succes...
however, there is no "default.log" file after the make procedure...??
Here are the non-problematic logs:
<a class="moz-txt-link-freetext" href="http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2016.03.03.18h22m37s_configure.log">http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2016.03.03.18h22m37s_configure.log</a>
<a class="moz-txt-link-freetext" href="http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2016.03.03.18h22m37s_RDict.log">http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2016.03.03.18h22m37s_RDict.log</a>
What can I say?
Some thoughts:
- All this is completely automated by a crontab... so the environment
variables shall be the same each night...
- configure+make+make install are launched by the script without any
"human pause" in between the end of each command: if there is anything
launched in the background by make, maybe it is not ended before the
beginning of make install?
I saw that there are also "make.log", "build.log" ".nagged",
CMakeLists.txt files generated: do they should be inspected?
Unfortunately, be runing the script again, I erased the faulty petsc
directory... so I am only left with the
configure.log+RDict.log+default.log I put on the web page... :/
Thanks,
Eric
Le 16-03-03 17:29, Satish Balay a écrit :
<blockquote type="cite">I tried a few builds - but I can't reproduce. So I do not know whats
going on here [and what the trigger is]..
Tried a configure command as close as possible to this one.. [and used
the nightlytarball aswell]
balay@es^/scratch/balay/petsc-master $ ./configure --prefix=/scratch/balay/petsc-install --with-mpi-compilers=1 --with-make-np=12 --with-shared-libraries=1 --download-openmpi --with-debugging=yes --with-mkl_pardiso=1 --with-mkl_pardiso-dir=$MKL --download-ml=yes --download-mumps=yes --download-superlu=yes --download-superlu_dist=yes --download-parmetis=yes --download-ptscotch=yes --download-metis=yes --download-suitesparse=yes --download-hypre=yes --with-scalapack=1 --with-scalapack-include=$MKL/include --with-scalapack-lib="-lmkl_scalapack_lp64 -lmkl_blacs_openmpi_lp64" --with-blas-lapack-dir=$MKL --download-cmake
Satish
On Thu, 3 Mar 2016, Matthew Knepley wrote:
<blockquote type="cite">On Thu, Mar 3, 2016 at 5:42 AM, Éric Chamberland <
<a class="moz-txt-link-abbreviated" href="mailto:Eric.Chamberland@giref.ulaval.ca">Eric.Chamberland@giref.ulaval.ca</a>> wrote:
<blockquote type="cite">Hi,
since last night, with petsc-master.tar.gz, it seems that "make install"
is broken.
Please have a look at these errors:
</blockquote>Satish, do you see this?
We had something like this before, but it was fixed.
Matt
<blockquote type="cite">====================
...
CC arch-linux2-c-debug/obj/src/tao/leastsquares/impls/pounders/gqt.o
CLINKER /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug/arch-linux2-c-debug/lib/libpetsc.so.3.06.3
gmake[2]: Leaving directory `/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug'
=========================================
gmake[1]: Leaving directory `/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug'
Now to install the libraries do:
make PETSC_DIR=/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug PETSC_ARCH=arch-linux2-c-debug install
=========================================
*** Using PETSC_DIR=/pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug PETSC_ARCH=arch-linux2-c-debug ***
No cached configure in RDict at /pmi/cmpbib/compilation_BIB_gcc_redhat_petsc-master_debug/COMPILE_AUTO/petsc-master-debug/arch-linux2-c-debug/lib/petsc/conf/RDict.db
Traceback (most recent call last):
File "./config/install.py", line 380, in <module>
Installer(sys.argv[1:]).run()
File "./config/install.py", line 373, in run
self.runsetup()
File "./config/install.py", line 334, in runsetup
self.setup()
File "./config/install.py", line 60, in setup
self.setupModules()
File "./config/install.py", line 51, in setupModules
self.setCompilers = self.framework.require('config.setCompilers', None)
AttributeError: 'NoneType' object has no attribute 'require'
make: *** [install] Error 1
=================================
Some useful logs:
<a class="moz-txt-link-freetext" href="http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/configure_2016.03.03.02h00m01s.loghttp://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2016.03.03.02h00m01s_RDict.loghttp://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2016.03.03.02h00m01s_default.log">http://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/configure_2016.03.03.02h00m01s.loghttp://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2016.03.03.02h00m01s_RDict.loghttp://www.giref.ulaval.ca/~cmpgiref/petsc-master-debug/2016.03.03.02h00m01s_default.log</a>
Thanks!
Eric
Le 16-02-27 15:36, Barry Smith a écrit :
PETSc Users,
We are planning the PETSc release 3.7 shortly. If you know of any bugs that need to be fixed or enhancements added before the release please let us know.
You can think of the master branch of the PETSc repository obtainable with
git clone <a class="moz-txt-link-freetext" href="https://bitbucket.org/petsc/petsc">https://bitbucket.org/petsc/petsc</a> petsc
as a release candidate for 3.7. Changes for the release are listed at <a class="moz-txt-link-freetext" href="http://www.mcs.anl.gov/petsc/documentation/changes/dev.html">http://www.mcs.anl.gov/petsc/documentation/changes/dev.html</a>
Thanks
Barry
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